Pregenerated sensors for RFC4 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000022881Ensembl transcript IDs: ENSMUST00000023598.15, ENSMUST00000115337.3, ENSMUST00000115338.8, ENSMUST00000133847.9
Found 70 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | CACGTTCATCAGATGCATTTAACTCAAGGACTCTTAATCGAAAGAGTTCAGGCCCTGCTGCCAAAATGGTaGATGTTTTGCCAGTTCCAG | + |
|
Preference number: 2 (lower is better) Translates to: HVHQMHLTQGLLIERVQALLPKW*MFCQFQ Trigger: CTGGAACTGGCAAAACATCCACCATTTTGGCAGCAG...GGCCTGAACTCTTTCGATTAAGAGTCCTTGAGTTAAATGCATCTGATGAACGTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000115337.3 |
||
| 3UTR-3UTR GCA 90 bp | CTCGGACTACTTGTATTCCACGTTCATCAGATGCATTTAACTCAAGGACTCTTAAAATGGTGGATGTTTTaGCAGTTCCAGGTGGCCCAT | + |
|
Preference number: 2 (lower is better) Translates to: LGLLVFHVHQMHLTQGLLKWWMF*QFQVAH Trigger: ATGGGCCACCTGGAACTGGCAAAACATCCACCATTT...TAAGAGTCCTTGAGTTAAATGCATCTGATGAACGTGGAATACAAGTAGTCCGAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000115337.3 |
||
| 3UTR-3UTR GCA 90 bp | TTCTCTCGGACTACTTGTATTCCACGTTCATCAGATGCATTTAACTCAAGGACTGAGCTCTCTAGCTGCTaGCAAAATGGTGGATGTTTT | + |
|
Preference number: 2 (lower is better) Translates to: FSRTTCIPRSSDAFNSRTELSSC*QNGGCF Trigger: AAAACATCCACCATTTTGGCAGCAGCTAGAGAGCTC...AGTCCTTGAGTTAAATGCATCTGATGAACGTGGAATACAAGTAGTCCGAGAGAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000115337.3 |
||
| 3UTR GCA 72 bp | TCGAAAGAGTTCAGGCCCAAAGAGCTCTCTAGCTGCTaGCAAAATGGTGGATGTTTTGCCAGTTCCAGGTGG | + |
|
Preference number: 3 (lower is better) Translates to: SKEFRPKELSSC*QNGGCFASSRW Trigger: CCACCTGGAACTGGCAAAACATCCACCATTTTGGCAGCAGCTAGAGAGCTCTTTGGGCCTGAACTCTTTCGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000115337.3 |
||
| 3UTR-3UTR CAA 90 bp | TTTAACTCAAGGACTCTTAATCGAAAGAGTTCAGGCCCAAAGAGCTCTCTAGCTAAAATGGTGGATGTTTaGCCAGTTCCAGGTGGCCCA | + |
|
Preference number: 3 (lower is better) Translates to: FNSRTLNRKSSGPKSSLAKMVDV*PVPGGP Trigger: TGGGCCACCTGGAACTGGCAAAACATCCACCATTTT...AGCTAGAGAGCTCTTTGGGCCTGAACTCTTTCGATTAAGAGTCCTTGAGTTAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000115337.3 |
||
| CDS-3UTR CCA 90 bp | GAAGCCTCTAACAGTTCTGAGTTAGCTGCTGCATCACAGTTGCACAAAGGCTCACACTGCTTCCTGCAGTaGCAGGTGTCCCCCGGTCCT | + |
|
Preference number: 4 (lower is better) Translates to: EASNSSELAAASQLHKGSHCFLQ*QVSPGP Trigger: AGGACCGGGGGACACCTGCCACTGCAGGAAGCAGTG...TGAGCCTTTGTGCAACTGTGATGCAGCAGCTAACTCAGAACTGTTAGAGGCTTC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000115338.8 |
||
| CDS-3UTR GCA 90 bp | CAAAAGGGGAGAGATGAAGCCTCTAACAGTTCTGAGTTAGCTGCTGCATCACAGTTCTCCACTGCTTCCTaGAGTGGCAGGTGTCCCCCG | + |
|
Preference number: 4 (lower is better) Translates to: QKGRDEASNSSELAAASQFSTAS*SGRCPP Trigger: CGGGGGACACCTGCCACTGCAGGAAGCAGTGGAGAA...CTGTGATGCAGCAGCTAACTCAGAACTGTTAGAGGCTTCATCTCTCCCCTTTTG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000115338.8 |
||
| CDS-3UTR GCA 90 bp | TCAAGGACTCTTAATCGAAAGAGTTCAGGCCCAAAGAGCTCTCTAGCTGCTGCCTCTTGGTTTCTCCACTaGTTCCTGCAGTGGCAGGTG | + |
|
Preference number: 4 (lower is better) Translates to: SRTLNRKSSGPKSSLAAASWFLH*FLQWQV Trigger: CACCTGCCACTGCAGGAAGCAGTGGAGAAACCAAGA...GGCAGCAGCTAGAGAGCTCTTTGGGCCTGAACTCTTTCGATTAAGAGTCCTTGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000115337.3 |
||
| CDS-3UTR GCA 90 bp | GATGCATTTAACTCAAGGACTCTTAATCGAAAGAGTTCAGGCCCAAAGAGCTCTTTCTCCACTGCTTCCTaGAGTGGCAGGTGTCCCCCG | + |
|
Preference number: 4 (lower is better) Translates to: DAFNSRTLNRKSSGPKSSFSTAS*SGRCPP Trigger: CGGGGGACACCTGCCACTGCAGGAAGCAGTGGAGAA...AGAGCTCTTTGGGCCTGAACTCTTTCGATTAAGAGTCCTTGAGTTAAATGCATC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000115337.3 |
||
| CDS-3UTR TCA 90 bp | GATGAAGCCTCTAACAGTTCTGAGTTAGCTGCTGCATCACAGTTGCACAAAGGCGTTGTGCTTTGGCACTaGCAGATGTGCCTTTCAGAA | + |
|
Preference number: 4 (lower is better) Translates to: DEASNSSELAAASQLHKGVVLWH*QMCLSE Trigger: TTCTGAAAGGCACATCTGTCAGTGCCAAAGCACAAC...GCCTTTGTGCAACTGTGATGCAGCAGCTAACTCAGAACTGTTAGAGGCTTCATC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000115338.8 |
||
| CDS-3UTR TCA 90 bp | AGAGATGAAGCCTCTAACAGTTCTGAGTTAGCTGCTGCATCACAGTTGCACAAAAGCTGCCTGAGCAGCTaGAGTCATCGAATCTGCTTC | + |
|
Preference number: 4 (lower is better) Translates to: RDEASNSSELAAASQLHKSCLSS*SHRICF Trigger: GAAGCAGATTCGATGACTTCAGCTGCTCAGGCAGCT...TTTGTGCAACTGTGATGCAGCAGCTAACTCAGAACTGTTAGAGGCTTCATCTCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000115338.8 |
||
| CDS-3UTR TCA 90 bp | ATACAAAAGGGGAGAGATGAAGCCTCTAACAGTTCTGAGTTAGCTGCTGCATCACGCCTTAAAGCTGCCTaGGCAGCTGAAGTCATCGAA | + |
|
Preference number: 4 (lower is better) Translates to: IQKGRDEASNSSELAAASRLKAA*AAEVIE Trigger: TTCGATGACTTCAGCTGCTCAGGCAGCTTTAAGGCG...TGATGCAGCAGCTAACTCAGAACTGTTAGAGGCTTCATCTCTCCCCTTTTGTAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000115338.8 |
||
| CDS-3UTR CCA 90 bp | ACTTGTATTCCACGTTCATCAGATGCATTTAACTCAAGGACTCTTAATCGAAAGCACTGCTTCCTGCAGTaGCAGGTGTCCCCCGGTCCT | + |
|
Preference number: 4 (lower is better) Translates to: TCIPRSSDAFNSRTLNRKHCFLQ*QVSPGP Trigger: AGGACCGGGGGACACCTGCCACTGCAGGAAGCAGTG...CTTTCGATTAAGAGTCCTTGAGTTAAATGCATCTGATGAACGTGGAATACAAGT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000115337.3 |
||
| CDS-3UTR TCA 90 bp | GAAGCCTCTAACAGTTCTGAGTTAGCTGCTGCATCACAGTTGCACAAAGGCTCACTTGAAGCGGAATTTTaGACATCTAGAAGTGAGGGG | + |
|
Preference number: 4 (lower is better) Translates to: EASNSSELAAASQLHKGSLEAEF*TSRSEG Trigger: CCCCTCACTTCTAGATGTTCAAAATTCCGCTTCAAG...TGAGCCTTTGTGCAACTGTGATGCAGCAGCTAACTCAGAACTGTTAGAGGCTTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000115338.8 |
||
| CDS-3UTR TCA 90 bp | GAAGCCTCTAACAGTTCTGAGTTAGCTGCTGCATCACAGTTGCACAAAGGCTCACTGTTGAATCTTATCTaGCAGAGGCTTGAAGCGGAA | + |
|
Preference number: 4 (lower is better) Translates to: EASNSSELAAASQLHKGSLLNLI*QRLEAE Trigger: TTCCGCTTCAAGCCTCTGTCAGATAAGATTCAACAG...TGAGCCTTTGTGCAACTGTGATGCAGCAGCTAACTCAGAACTGTTAGAGGCTTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000115338.8 |
||
| CDS-3UTR CCA 90 bp | ATACAAAAGGGGAGAGATGAAGCCTCTAACAGTTCTGAGTTAGCTGCTGCATCAGCAACCACTTCGTCCTaGAAAGCCACTTCATCCACA | + |
|
Preference number: 4 (lower is better) Translates to: IQKGRDEASNSSELAAASATTSS*KATSST Trigger: TGTGGATGAAGTGGCTTTCCAGGACGAAGTGGTTGC...TGATGCAGCAGCTAACTCAGAACTGTTAGAGGCTTCATCTCTCCCCTTTTGTAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000115338.8 |
||
| CDS-3UTR GCA 90 bp | TTTAACTCAAGGACTCTTAATCGAAAGAGTTCAGGCCCAAAGAGCTCTCTAGCTGGACTTTCTCAGCACTaGAACCACTTCGTCCTGGAA | + |
|
Preference number: 4 (lower is better) Translates to: FNSRTLNRKSSGPKSSLAGLSQH*NHFVLE Trigger: TTCCAGGACGAAGTGGTTGCAGTGCTGAGAAAGTCC...AGCTAGAGAGCTCTTTGGGCCTGAACTCTTTCGATTAAGAGTCCTTGAGTTAAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000115337.3 |
||
| CDS-3UTR GCA 90 bp | AGAGATGAAGCCTCTAACAGTTCTGAGTTAGCTGCTGCATCACAGTTGCACAAAAAATGGTGGATGTTTTaGCAGTTCCAGGTGGCCCAT | + |
|
Preference number: 4 (lower is better) Translates to: RDEASNSSELAAASQLHKKWWMF*QFQVAH Trigger: ATGGGCCACCTGGAACTGGCAAAACATCCACCATTT...TTTGTGCAACTGTGATGCAGCAGCTAACTCAGAACTGTTAGAGGCTTCATCTCT 46% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000115338.8 |
||
| CDS-3UTR CCA 90 bp | ATACAAAAGGGGAGAGATGAAGCCTCTAACAGTTCTGAGTTAGCTGCTGCATCACTGCTGCCAAAATGGTaGATGTTTTGCCAGTTCCAG | + |
|
Preference number: 4 (lower is better) Translates to: IQKGRDEASNSSELAAASLLPKW*MFCQFQ Trigger: CTGGAACTGGCAAAACATCCACCATTTTGGCAGCAG...TGATGCAGCAGCTAACTCAGAACTGTTAGAGGCTTCATCTCTCCCCTTTTGTAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000115338.8 |
||
| CDS-3UTR TCA 90 bp | CAAAAGGGGAGAGATGAAGCCTCTAACAGTTCTGAGTTAGCTGCTGCATCACAGCCTCATTGCCAATTTTaGCATTTTCCTTCTCAGCAA | + |
|
Preference number: 4 (lower is better) Translates to: QKGRDEASNSSELAAASQPHCQF*HFPSQQ Trigger: TTGCTGAGAAGGAAAATGTCAAAATTGGCAATGAGG...CTGTGATGCAGCAGCTAACTCAGAACTGTTAGAGGCTTCATCTCTCCCCTTTTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000115338.8 |
||
| CDS-3UTR TCA 90 bp | ACTTTCTCTCGGACTACTTGTATTCCACGTTCATCAGATGCATTTAACTCAAGGGCAAGTGAGGCTTGTTaGAGTCAGCTCCTTCTAAGG | + |
|
Preference number: 4 (lower is better) Translates to: TFSRTTCIPRSSDAFNSRASEAC*SQLLLR Trigger: CCTTAGAAGGAGCTGACTTCAACAAGCCTCACTTGC...CCTTGAGTTAAATGCATCTGATGAACGTGGAATACAAGTAGTCCGAGAGAAAGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000115337.3 |
||
| CDS-3UTR GCA 90 bp | AGAGATGAAGCCTCTAACAGTTCTGAGTTAGCTGCTGCATCACAGTTGCACAAAGAGCTCTCTAGCTGCTaGCAAAATGGTGGATGTTTT | + |
|
Preference number: 4 (lower is better) Translates to: RDEASNSSELAAASQLHKELSSC*QNGGCF Trigger: AAAACATCCACCATTTTGGCAGCAGCTAGAGAGCTC...TTTGTGCAACTGTGATGCAGCAGCTAACTCAGAACTGTTAGAGGCTTCATCTCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000115338.8 |
||
| CDS-3UTR CCA 90 bp | TTCTCTCGGACTACTTGTATTCCACGTTCATCAGATGCATTTAACTCAAGGACTGCAACCACTTCGTCCTaGAAAGCCACTTCATCCACA | + |
|
Preference number: 4 (lower is better) Translates to: FSRTTCIPRSSDAFNSRTATTSS*KATSST Trigger: TGTGGATGAAGTGGCTTTCCAGGACGAAGTGGTTGC...AGTCCTTGAGTTAAATGCATCTGATGAACGTGGAATACAAGTAGTCCGAGAGAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000115337.3 |
||
| CDS-3UTR TCA 90 bp | AGAGATGAAGCCTCTAACAGTTCTGAGTTAGCTGCTGCATCACAGTTGCACAAACACTGTGACATGCAGTaGATATTCCATCAATGGTTG | + |
|
Preference number: 4 (lower is better) Translates to: RDEASNSSELAAASQLHKHCDMQ*IFHQWL Trigger: CAACCATTGATGGAATATTCACTGCATGTCACAGTG...TTTGTGCAACTGTGATGCAGCAGCTAACTCAGAACTGTTAGAGGCTTCATCTCT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000115338.8 |
||
| CDS-3UTR GCA 90 bp | TTATTTATAGTAACTGGTTTCATACAAAAGGGGAGAGATGAAGCCTCTAACAGTTCTTGGTTTCTCCACTaGTTCCTGCAGTGGCAGGTG | + |
|
Preference number: 4 (lower is better) Translates to: LFIVTGFIQKGRDEASNSSWFLH*FLQWQV Trigger: CACCTGCCACTGCAGGAAGCAGTGGAGAAACCAAGA...ACTGTTAGAGGCTTCATCTCTCCCCTTTTGTATGAAACCAGTTACTATAAATAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000115338.8 |
||
| CDS-3UTR GCA 90 bp | ATACAAAAGGGGAGAGATGAAGCCTCTAACAGTTCTGAGTTAGCTGCTGCATCAAGAGCCACTGTGACATaGAGTGAATATTCCATCAAT | + |
|
Preference number: 4 (lower is better) Translates to: IQKGRDEASNSSELAAASRATVT*SEYSIN Trigger: ATTGATGGAATATTCACTGCATGTCACAGTGGCTCT...TGATGCAGCAGCTAACTCAGAACTGTTAGAGGCTTCATCTCTCCCCTTTTGTAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000115338.8 |
||
| CDS-3UTR CCA 90 bp | CACGTTCATCAGATGCATTTAACTCAAGGACTCTTAATCGAAAGAGTTCAGGCCTTCCACCCAAGGAACTaGTTTGACTTTCTTGGTTTC | + |
|
Preference number: 4 (lower is better) Translates to: HVHQMHLTQGLLIERVQAFHPRN*FDFLGF Trigger: GAAACCAAGAAAGTCAAACCAGTTCCTTGGGTGGAA...GGCCTGAACTCTTTCGATTAAGAGTCCTTGAGTTAAATGCATCTGATGAACGTG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000115337.3 |
||
| CDS-3UTR CCA 90 bp | GATGCATTTAACTCAAGGACTCTTAATCGAAAGAGTTCAGGCCCAAAGAGCTCTTTCATCCACACACTTTaGACGGTATTTTTCCACCCA | + |
|
Preference number: 4 (lower is better) Translates to: DAFNSRTLNRKSSGPKSSFIHTL*TVFFHP Trigger: TGGGTGGAAAAATACCGTCCAAAGTGTGTGGATGAA...AGAGCTCTTTGGGCCTGAACTCTTTCGATTAAGAGTCCTTGAGTTAAATGCATC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000115337.3 |
||
| CDS-3UTR CCA 90 bp | ATACAAAAGGGGAGAGATGAAGCCTCTAACAGTTCTGAGTTAGCTGCTGCATCATTGATTCTTTTTCCATaGTACGCCTTAAAGCTGCCT | + |
|
Preference number: 4 (lower is better) Translates to: IQKGRDEASNSSELAAASLILFP*YALKLP Trigger: AGGCAGCTTTAAGGCGTACCATGGAAAAAGAATCAA...TGATGCAGCAGCTAACTCAGAACTGTTAGAGGCTTCATCTCTCCCCTTTTGTAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000115338.8 |
||
| CDS-3UTR TCA 90 bp | TGTATTCCACGTTCATCAGATGCATTTAACTCAAGGACTCTTAATCGAAAGAGTGTTGTGCTTTGGCACTaGCAGATGTGCCTTTCAGAA | + |
|
Preference number: 4 (lower is better) Translates to: CIPRSSDAFNSRTLNRKSVVLWH*QMCLSE Trigger: TTCTGAAAGGCACATCTGTCAGTGCCAAAGCACAAC...ACTCTTTCGATTAAGAGTCCTTGAGTTAAATGCATCTGATGAACGTGGAATACA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000115337.3 |
||
| CDS-3UTR TCA 90 bp | TTATTTATAGTAACTGGTTTCATACAAAAGGGGAGAGATGAAGCCTCTAACAGTAGTAATCGCTCCTGTTaGATCTTATCTGACAGAGGC | + |
|
Preference number: 4 (lower is better) Translates to: LFIVTGFIQKGRDEASNSSNRSC*ILSDRG Trigger: GCCTCTGTCAGATAAGATTCAACAGGAGCGATTACT...ACTGTTAGAGGCTTCATCTCTCCCCTTTTGTATGAAACCAGTTACTATAAATAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000115338.8 |
||
| CDS-3UTR TCA 90 bp | TTATTTATAGTAACTGGTTTCATACAAAAGGGGAGAGATGAAGCCTCTAACAGTTATCTGACAGAGGCTTaGAGCGGAATTTTGAACATC | + |
|
Preference number: 4 (lower is better) Translates to: LFIVTGFIQKGRDEASNSYLTEA*SGILNI Trigger: GATGTTCAAAATTCCGCTTCAAGCCTCTGTCAGATA...ACTGTTAGAGGCTTCATCTCTCCCCTTTTGTATGAAACCAGTTACTATAAATAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000115338.8 |
||
| CDS-3UTR TCA 90 bp | TTATTTATAGTAACTGGTTTCATACAAAAGGGGAGAGATGAAGCCTCTAACAGTCACTCTGAAGAAATGTaGTGGCTTTCCGTAAATCTC | + |
|
Preference number: 4 (lower is better) Translates to: LFIVTGFIQKGRDEASNSHSEEM*WLSVNL Trigger: GAGATTTACGGAAAGCCATCACATTTCTTCAGAGTG...ACTGTTAGAGGCTTCATCTCTCCCCTTTTGTATGAAACCAGTTACTATAAATAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000115338.8 |
||
| CDS-3UTR CCA 90 bp | TTATTTATAGTAACTGGTTTCATACAAAAGGGGAGAGATGAAGCCTCTAACAGTTTCCACCCAAGGAACTaGTTTGACTTTCTTGGTTTC | + |
|
Preference number: 4 (lower is better) Translates to: LFIVTGFIQKGRDEASNSFHPRN*FDFLGF Trigger: GAAACCAAGAAAGTCAAACCAGTTCCTTGGGTGGAA...ACTGTTAGAGGCTTCATCTCTCCCCTTTTGTATGAAACCAGTTACTATAAATAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000115338.8 |
||
| CDS-3UTR CAA 90 bp | GGGAGAGATGAAGCCTCTAACAGTTCTGAGTTAGCTGCTGCATCACAGTTGCACTTGGTCAGTTGTGCTTaGGCACTGACAGATGTGCCT | + |
|
Preference number: 5 (lower is better) Translates to: GRDEASNSSELAAASQLHLVSCA*ALTDVP Trigger: AGGCACATCTGTCAGTGCCAAAGCACAACTGACCAA...GTGCAACTGTGATGCAGCAGCTAACTCAGAACTGTTAGAGGCTTCATCTCTCCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000115338.8 |
||
| CDS CCA 90 bp | CACTTCATCCACACACTTTGGACGGTATTTTTCCACCCAAGGAACTaGTTTGACTTTCTTGGTTTCTCCACTGCTTCCTGCAGTGGCAGG | + |
|
Preference number: 5 (lower is better) Translates to: HFIHTLWTVFFHPRN*FDFLGFSTASCSGR Trigger: CCTGCCACTGCAGGAAGCAGTGGAGAAACCAAGAAAGTCAAACCAGTTCCTTGGGTGGAAAAATACCGTCCAAAGTGTGTGGATGAAGTG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000023598.15 ENSMUST00000115337.3 ENSMUST00000115338.8 ENSMUST00000133847.9 |
||
| CDS-3UTR CAA 90 bp | CAAAAGGGGAGAGATGAAGCCTCTAACAGTTCTGAGTTAGCTGCTGCATCACAGAAAATGGTGGATGTTTaGCCAGTTCCAGGTGGCCCA | + |
|
Preference number: 5 (lower is better) Translates to: QKGRDEASNSSELAAASQKMVDV*PVPGGP Trigger: TGGGCCACCTGGAACTGGCAAAACATCCACCATTTT...CTGTGATGCAGCAGCTAACTCAGAACTGTTAGAGGCTTCATCTCTCCCCTTTTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000115338.8 |
||
| CDS-3UTR CAA 90 bp | TTTAACTCAAGGACTCTTAATCGAAAGAGTTCAGGCCCAAAGAGCTCTCTAGCTCCGGTCCTTGGTCAGTaGTGCTTTGGCACTGACAGA | + |
|
Preference number: 5 (lower is better) Translates to: FNSRTLNRKSSGPKSSLAPVLGQ*CFGTDR Trigger: TCTGTCAGTGCCAAAGCACAACTGACCAAGGACCGG...AGCTAGAGAGCTCTTTGGGCCTGAACTCTTTCGATTAAGAGTCCTTGAGTTAAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000115337.3 |
||
| CDS-3UTR CAA 90 bp | GATGAAGCCTCTAACAGTTCTGAGTTAGCTGCTGCATCACAGTTGCACAAAGGCACCCAAGGAACTGGTTaGACTTTCTTGGTTTCTCCA | + |
|
Preference number: 5 (lower is better) Translates to: DEASNSSELAAASQLHKGTQGTG*TFLVSP Trigger: TGGAGAAACCAAGAAAGTCAAACCAGTTCCTTGGGT...GCCTTTGTGCAACTGTGATGCAGCAGCTAACTCAGAACTGTTAGAGGCTTCATC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000115338.8 |
||
| CDS TCA 90 bp | ATATTCCATCAATGGTTGCAGCTGGTATTACCCCAGCAATGTCTGTaGTCACATCTTCAGAGACTTCCTTTCCACCTGTTAGTCGAGTGG | + |
|
Preference number: 5 (lower is better) Translates to: IFHQWLQLVLPQQCL*SHLQRLPFHLLVEW Trigger: CCACTCGACTAACAGGTGGAAAGGAAGTCTCTGAAGATGTGATCACAGACATTGCTGGGGTAATACCAGCTGCAACCATTGATGGAATAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023598.15 ENSMUST00000115338.8 |
||
| CDS GCA 90 bp | AGTTGCACAAAGGCTCATCAACTGCAGGTGTTCATCTGCACCATCTaGCAAGCACTTGTCTACTTCAGCAAGTTTCTCTGTGATAATGGA | + |
|
Preference number: 5 (lower is better) Translates to: SCTKAHQLQVFICTI*QALVYFSKFLCDNG Trigger: TCCATTATCACAGAGAAACTTGCTGAAGTAGACAAGTGCTTGGCAGATGGTGCAGATGAACACCTGCAGTTGATGAGCCTTTGTGCAACT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023598.15 |
||
| CDS-3UTR CAA 90 bp | TCTCTCGGACTACTTGTATTCCACGTTCATCAGATGCATTTAACTCAAGGACTCTTGGTCAGTTGTGCTTaGGCACTGACAGATGTGCCT | + |
|
Preference number: 5 (lower is better) Translates to: SLGLLVFHVHQMHLTQGLLVSCA*ALTDVP Trigger: AGGCACATCTGTCAGTGCCAAAGCACAACTGACCAA...GAGTCCTTGAGTTAAATGCATCTGATGAACGTGGAATACAAGTAGTCCGAGAGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000115337.3 |
||
| CDS GCA 90 bp | GTCAAAAGAGCCACTGTGACATGCAGTGAATATTCCATCAATGGTTaGAGCTGGTATTACCCCAGCAATGTCTGTGATCACATCTTCAGA | + |
|
Preference number: 5 (lower is better) Translates to: VKRATVTCSEYSING*SWYYPSNVCDHIFR Trigger: TCTGAAGATGTGATCACAGACATTGCTGGGGTAATACCAGCTGCAACCATTGATGGAATATTCACTGCATGTCACAGTGGCTCTTTTGAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000023598.15 ENSMUST00000115338.8 |
||
| CDS-3UTR CAA 90 bp | GATGAAGCCTCTAACAGTTCTGAGTTAGCTGCTGCATCACAGTTGCACAAAGGCTTATCTGACAGAGGCTaGAAGCGGAATTTTGAACAT | + |
|
Preference number: 5 (lower is better) Translates to: DEASNSSELAAASQLHKGLSDRG*KRNFEH Trigger: ATGTTCAAAATTCCGCTTCAAGCCTCTGTCAGATAA...GCCTTTGTGCAACTGTGATGCAGCAGCTAACTCAGAACTGTTAGAGGCTTCATC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000115338.8 |
||
| CDS-3UTR CAA 90 bp | ATACAAAAGGGGAGAGATGAAGCCTCTAACAGTTCTGAGTTAGCTGCTGCATCAATATTCCATCAATGGTaGCAGCTGGTATTACCCCAG | + |
|
Preference number: 5 (lower is better) Translates to: IQKGRDEASNSSELAAASIFHQW*QLVLPQ Trigger: CTGGGGTAATACCAGCTGCAACCATTGATGGAATAT...TGATGCAGCAGCTAACTCAGAACTGTTAGAGGCTTCATCTCTCCCCTTTTGTAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000115338.8 |
||
| CDS TCA 90 bp | GGAGGACATGGCTTCCCATCTGAACGACTTCCTGATACAGTTAACTaGGCAAAATTTTTCACTTTCTCTCGGACTACTTGTATTCCACGT | + |
|
Preference number: 5 (lower is better) Translates to: GGHGFPSERLPDTVN*AKFFTFSRTTCIPR Trigger: ACGTGGAATACAAGTAGTCCGAGAGAAAGTGAAAAATTTTGCTCAGTTAACTGTATCAGGAAGTCGTTCAGATGGGAAGCCATGTCCTCC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000023598.15 ENSMUST00000115338.8 ENSMUST00000133847.9 |
||
| CDS TCA 90 bp | TTACCACAGCTTCTAGTTTGTCAAAAGAGCCACTGTGACATGCAGTaGATATTCCATCAATGGTTGCAGCTGGTATTACCCCAGCAATGT | + |
|
Preference number: 5 (lower is better) Translates to: LPQLLVCQKSHCDMQ*IFHQWLQLVLPQQC Trigger: ACATTGCTGGGGTAATACCAGCTGCAACCATTGATGGAATATTCACTGCATGTCACAGTGGCTCTTTTGACAAACTAGAAGCTGTGGTAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000023598.15 ENSMUST00000115338.8 |
||
| CDS-3UTR CAA 90 bp | TTATTTATAGTAACTGGTTTCATACAAAAGGGGAGAGATGAAGCCTCTAACAGTCCGGTCCTTGGTCAGTaGTGCTTTGGCACTGACAGA | + |
|
Preference number: 5 (lower is better) Translates to: LFIVTGFIQKGRDEASNSPVLGQ*CFGTDR Trigger: TCTGTCAGTGCCAAAGCACAACTGACCAAGGACCGG...ACTGTTAGAGGCTTCATCTCTCCCCTTTTGTATGAAACCAGTTACTATAAATAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000115338.8 |
||
| CDS TCA 90 bp | CTGGTTGTTTTTGATTCTTTTTCCATGGTACGCCTTAAAGCTGCCTaGGCAGCTGAAGTCATCGAATCTGCTTCATCCAGAATTACAATC | + |
|
Preference number: 5 (lower is better) Translates to: LVVFDSFSMVRLKAA*AAEVIESASSRITI Trigger: GATTGTAATTCTGGATGAAGCAGATTCGATGACTTCAGCTGCTCAGGCAGCTTTAAGGCGTACCATGGAAAAAGAATCAAAAACAACCAG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 3 transcripts: ENSMUST00000023598.15 ENSMUST00000115338.8 ENSMUST00000133847.9 |
||
| CDS TCA 90 bp | ACATCTTCAGAGACTTCCTTTCCACCTGTTAGTCGAGTGGCACTCTaGAGAAATGTGATGGCTTTCCGTAAATCTCCTTCTGATATCTTA | + |
|
Preference number: 5 (lower is better) Translates to: TSSETSFPPVSRVAL*RNVMAFRKSPSDIL Trigger: TAAGATATCAGAAGGAGATTTACGGAAAGCCATCACATTTCTTCAGAGTGCCACTCGACTAACAGGTGGAAAGGAAGTCTCTGAAGATGT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023598.15 ENSMUST00000115338.8 |
||
| CDS TCA 90 bp | ATGAGGTTCTTTACCACAGCTTCTAGTTTGTCAAAAGAGCCACTGTaGCATGCAGTGAATATTCCATCAATGGTTGCAGCTGGTATTACC | + |
|
Preference number: 5 (lower is better) Translates to: MRFFTTASSLSKEPL*HAVNIPSMVAAGIT Trigger: GGTAATACCAGCTGCAACCATTGATGGAATATTCACTGCATGTCACAGTGGCTCTTTTGACAAACTAGAAGCTGTGGTAAAGAACCTCAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023598.15 ENSMUST00000115338.8 |
||
| CDS-3UTR CAA 90 bp | TTCTCTCGGACTACTTGTATTCCACGTTCATCAGATGCATTTAACTCAAGGACTACTGGTTTGACTTTCTaGGTTTCTCCACTGCTTCCT | + |
|
Preference number: 5 (lower is better) Translates to: FSRTTCIPRSSDAFNSRTTGLTF*VSPLLP Trigger: AGGAAGCAGTGGAGAAACCAAGAAAGTCAAACCAGT...AGTCCTTGAGTTAAATGCATCTGATGAACGTGGAATACAAGTAGTCCGAGAGAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000115337.3 |
||
| CDS-3UTR CAA 90 bp | TTCTCTCGGACTACTTGTATTCCACGTTCATCAGATGCATTTAACTCAAGGACTACCCAAGGAACTGGTTaGACTTTCTTGGTTTCTCCA | + |
|
Preference number: 5 (lower is better) Translates to: FSRTTCIPRSSDAFNSRTTQGTG*TFLVSP Trigger: TGGAGAAACCAAGAAAGTCAAACCAGTTCCTTGGGT...AGTCCTTGAGTTAAATGCATCTGATGAACGTGGAATACAAGTAGTCCGAGAGAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000115337.3 |
||
| CDS-3UTR CAA 90 bp | TTATTTATAGTAACTGGTTTCATACAAAAGGGGAGAGATGAAGCCTCTAACAGTTTTCTCTCGGACTACTaGTATTCCACGTTCATCAGA | + |
|
Preference number: 5 (lower is better) Translates to: LFIVTGFIQKGRDEASNSFLSDY*YSTFIR Trigger: TCTGATGAACGTGGAATACAAGTAGTCCGAGAGAAA...ACTGTTAGAGGCTTCATCTCTCCCCTTTTGTATGAAACCAGTTACTATAAATAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000115338.8 |
||
| CDS CAA 72 bp | GTGGCAGGTGTCCCCCGGTCCTTGGTCAGTTGTGCTTaGGCACTGACAGATGTGCCTTTCAGAAATGCCTGC | + |
|
Preference number: 6 (lower is better) Translates to: VAGVPRSLVSCA*ALTDVPFRNAC Trigger: GCAGGCATTTCTGAAAGGCACATCTGTCAGTGCCAAAGCACAACTGACCAAGGACCGGGGGACACCTGCCAC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000023598.15 ENSMUST00000115337.3 ENSMUST00000115338.8 ENSMUST00000133847.9 |
||
| CDS GCA 72 bp | TGCAGTGGCAGGTGTCCCCCGGTCCTTGGTCAGTTGTaGTTTGGCACTGACAGATGTGCCTTTCAGAAATGC | + |
|
Preference number: 6 (lower is better) Translates to: CSGRCPPVLGQL*FGTDRCAFQKC Trigger: GCATTTCTGAAAGGCACATCTGTCAGTGCCAAAGCACAACTGACCAAGGACCGGGGGACACCTGCCACTGCA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000023598.15 ENSMUST00000115337.3 ENSMUST00000115338.8 ENSMUST00000133847.9 |
||
| CDS CAA 72 bp | TCCTGCAGTGGCAGGTGTCCCCCGGTCCTTGGTCAGTaGTGCTTTGGCACTGACAGATGTGCCTTTCAGAAA | + |
|
Preference number: 6 (lower is better) Translates to: SCSGRCPPVLGQ*CFGTDRCAFQK Trigger: TTTCTGAAAGGCACATCTGTCAGTGCCAAAGCACAACTGACCAAGGACCGGGGGACACCTGCCACTGCAGGA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000023598.15 ENSMUST00000115337.3 ENSMUST00000115338.8 ENSMUST00000133847.9 |
||
| CDS CCA 72 bp | TCTAAGGACTTTCTCAGCACTGCAACCACTTCGTCCTaGAAAGCCACTTCATCCACACACTTTGGACGGTAT | + |
|
Preference number: 6 (lower is better) Translates to: SKDFLSTATTSS*KATSSTHFGRY Trigger: ATACCGTCCAAAGTGTGTGGATGAAGTGGCTTTCCAGGACGAAGTGGTTGCAGTGCTGAGAAAGTCCTTAGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000023598.15 ENSMUST00000115337.3 ENSMUST00000115338.8 ENSMUST00000133847.9 |
||
| CDS GCA 72 bp | GCCACTGTGACATGCAGTGAATATTCCATCAATGGTTaGAGCTGGTATTACCCCAGCAATGTCTGTGATCAC | + |
|
Preference number: 6 (lower is better) Translates to: ATVTCSEYSING*SWYYPSNVCDH Trigger: GTGATCACAGACATTGCTGGGGTAATACCAGCTGCAACCATTGATGGAATATTCACTGCATGTCACAGTGGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023598.15 ENSMUST00000115338.8 |
||
| CDS GCA 72 bp | AAGGCTCATCAACTGCAGGTGTTCATCTGCACCATCTaGCAAGCACTTGTCTACTTCAGCAAGTTTCTCTGT | + |
|
Preference number: 6 (lower is better) Translates to: KAHQLQVFICTI*QALVYFSKFLC Trigger: ACAGAGAAACTTGCTGAAGTAGACAAGTGCTTGGCAGATGGTGCAGATGAACACCTGCAGTTGATGAGCCTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023598.15 |
||
| CDS CAA 72 bp | CACTTTGGACGGTATTTTTCCACCCAAGGAACTGGTTaGACTTTCTTGGTTTCTCCACTGCTTCCTGCAGTG | + |
|
Preference number: 6 (lower is better) Translates to: HFGRYFSTQGTG*TFLVSPLLPAV Trigger: CACTGCAGGAAGCAGTGGAGAAACCAAGAAAGTCAAACCAGTTCCTTGGGTGGAAAAATACCGTCCAAAGTG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000023598.15 ENSMUST00000115337.3 ENSMUST00000115338.8 ENSMUST00000133847.9 |
||
| CDS TCA 72 bp | GAGACTTCCTTTCCACCTGTTAGTCGAGTGGCACTCTaGAGAAATGTGATGGCTTTCCGTAAATCTCCTTCT | + |
|
Preference number: 6 (lower is better) Translates to: ETSFPPVSRVAL*RNVMAFRKSPS Trigger: AGAAGGAGATTTACGGAAAGCCATCACATTTCTTCAGAGTGCCACTCGACTAACAGGTGGAAAGGAAGTCTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023598.15 ENSMUST00000115338.8 |
||
| CDS TCA 72 bp | CAATGGTTGCAGCTGGTATTACCCCAGCAATGTCTGTaGTCACATCTTCAGAGACTTCCTTTCCACCTGTTA | + |
|
Preference number: 6 (lower is better) Translates to: QWLQLVLPQQCL*SHLQRLPFHLL Trigger: TAACAGGTGGAAAGGAAGTCTCTGAAGATGTGATCACAGACATTGCTGGGGTAATACCAGCTGCAACCATTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023598.15 ENSMUST00000115338.8 |
||
| CDS TCA 72 bp | TTTGATTCTTTTTCCATGGTACGCCTTAAAGCTGCCTaGGCAGCTGAAGTCATCGAATCTGCTTCATCCAGA | + |
|
Preference number: 6 (lower is better) Translates to: FDSFSMVRLKAA*AAEVIESASSR Trigger: TCTGGATGAAGCAGATTCGATGACTTCAGCTGCTCAGGCAGCTTTAAGGCGTACCATGGAAAAAGAATCAAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000023598.15 ENSMUST00000115338.8 ENSMUST00000133847.9 |
||
| CDS CCA 72 bp | GTGACATGCAGTGAATATTCCATCAATGGTTGCAGCTaGTATTACCCCAGCAATGTCTGTGATCACATCTTC | + |
|
Preference number: 6 (lower is better) Translates to: VTCSEYSINGCS*YYPSNVCDHIF Trigger: GAAGATGTGATCACAGACATTGCTGGGGTAATACCAGCTGCAACCATTGATGGAATATTCACTGCATGTCAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023598.15 ENSMUST00000115338.8 |
||
| CDS TCA 72 bp | TTTACCACAGCTTCTAGTTTGTCAAAAGAGCCACTGTaGCATGCAGTGAATATTCCATCAATGGTTGCAGCT | + |
|
Preference number: 6 (lower is better) Translates to: FTTASSLSKEPL*HAVNIPSMVAA Trigger: AGCTGCAACCATTGATGGAATATTCACTGCATGTCACAGTGGCTCTTTTGACAAACTAGAAGCTGTGGTAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023598.15 ENSMUST00000115338.8 |
||
| CDS GCA 72 bp | AATTGCATCATGAAGTTGATTGACAAGCTGAGTAGCTaGATGTCCTTCATCTATGAGGTTCTTTACCACAGC | + |
|
Preference number: 6 (lower is better) Translates to: NCIMKLIDKLSS*MSFIYEVLYHS Trigger: GCTGTGGTAAAGAACCTCATAGATGAAGGACATGCAGCTACTCAGCTTGTCAATCAACTTCATGATGCAATT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023598.15 ENSMUST00000115338.8 |
||
| CDS TCA 72 bp | TTTTCCTTCTCAGCAATATCCAGTAATCGCTCCTGTTaGATCTTATCTGACAGAGGCTTGAAGCGGAATTTT | + |
|
Preference number: 6 (lower is better) Translates to: FSFSAISSNRSC*ILSDRGLKRNF Trigger: AAAATTCCGCTTCAAGCCTCTGTCAGATAAGATTCAACAGGAGCGATTACTGGATATTGCTGAGAAGGAAAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000023598.15 ENSMUST00000115338.8 ENSMUST00000133847.9 |
||
| CDS CAA 72 bp | ATCTTAACAAGATACGCTATTTCCTCATTGCCAATTTaGACATTTTCCTTCTCAGCAATATCCAGTAATCGC | + |
|
Preference number: 6 (lower is better) Translates to: ILTRYAISSLPI*TFSFSAISSNR Trigger: GCGATTACTGGATATTGCTGAGAAGGAAAATGTCAAAATTGGCAATGAGGAAATAGCGTATCTTGTTAAGAT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000023598.15 ENSMUST00000115338.8 ENSMUST00000133847.9 |
||
| CDS CAA 72 bp | AGACAGATTTTCATTTTCTATAATTGCATCATGAAGTaGATTGACAAGCTGAGTAGCTGCATGTCCTTCATC | + |
|
Preference number: 6 (lower is better) Translates to: RQIFIFYNCIMK*IDKLSSCMSFI Trigger: GATGAAGGACATGCAGCTACTCAGCTTGTCAATCAACTTCATGATGCAATTATAGAAAATGAAAATCTGTCT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000023598.15 ENSMUST00000115338.8 |
||