Pregenerated sensors for RFC3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000033970Ensembl transcript IDs: ENSMUST00000038131.10
Found 44 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR GCA 90 bp | CCCAGGATAAATTTATATAAACAAGGCATCTGTTGTGCTTGGAGGAGCTGCTGGCACACTGCACCAGGTTaGGCAGCTGTGCTGCCTGTT | + |
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Preference number: 4 (lower is better) Translates to: PRINLYKQGICCAWRSCWHTAPG*AAVLPV Trigger: AACAGGCAGCACAGCTGCGCAACCTGGTGCAGTGTG...CCAGCAGCTCCTCCAAGCACAACAGATGCCTTGTTTATATAAATTTATCCTGGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038131.10 |
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| CDS-3UTR GCA 90 bp | CCCAGGATAAATTTATATAAACAAGGCATCTGTTGTGCTTGGAGGAGCTGCTGGGGAAAGTCTCCACACTaGACCAGGTTGCGCAGCTGT | + |
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Preference number: 4 (lower is better) Translates to: PRINLYKQGICCAWRSCWGKSPH*TRLRSC Trigger: ACAGCTGCGCAACCTGGTGCAGTGTGGAGACTTTCC...CCAGCAGCTCCTCCAAGCACAACAGATGCCTTGTTTATATAAATTTATCCTGGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038131.10 |
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| CDS-3UTR GCA 90 bp | CCCAGGATAAATTTATATAAACAAGGCATCTGTTGTGCTTGGAGGAGCTGCTGGGTAGGCTGCCATCTGTaGCACTTCCCCTTTCAGCTG | + |
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Preference number: 4 (lower is better) Translates to: PRINLYKQGICCAWRSCWVGCHL*HFPFQL Trigger: CAGCTGAAAGGGGAAGTGGCACAGATGGCAGCCTAC...CCAGCAGCTCCTCCAAGCACAACAGATGCCTTGTTTATATAAATTTATCCTGGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038131.10 |
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| CDS-3UTR GCA 90 bp | CCCAGGATAAATTTATATAAACAAGGCATCTGTTGTGCTTGGAGGAGCTGCTGGGTGCTCATAGTAGGCTaGCATCTGTGCCACTTCCCC | + |
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Preference number: 4 (lower is better) Translates to: PRINLYKQGICCAWRSCWVLIVG*HLCHFP Trigger: GGGGAAGTGGCACAGATGGCAGCCTACTATGAGCAC...CCAGCAGCTCCTCCAAGCACAACAGATGCCTTGTTTATATAAATTTATCCTGGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038131.10 |
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| CDS-3UTR TCA 90 bp | CCCAGGATAAATTTATATAAACAAGGCATCTGTTGTGCTTGGAGGAGCTGCTGGCTCTGTGGCGTCTGCTaGCTGACAATAGCATTTGCG | + |
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Preference number: 4 (lower is better) Translates to: PRINLYKQGICCAWRSCWLCGVC*LTIAFA Trigger: CGCAAATGCTATTGTCAGTCAGCAGACGCCACAGAG...CCAGCAGCTCCTCCAAGCACAACAGATGCCTTGTTTATATAAATTTATCCTGGG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038131.10 |
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| CDS-3UTR TCA 90 bp | CCCAGGATAAATTTATATAAACAAGGCATCTGTTGTGCTTGGAGGAGCTGCTGGGTCTTCAGCATCTCCTaGATTACAACTCGGTCGCTG | + |
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Preference number: 4 (lower is better) Translates to: PRINLYKQGICCAWRSCWVFSIS*ITTRSL Trigger: CAGCGACCGAGTTGTAATTCAGGAGATGCTGAAGAC...CCAGCAGCTCCTCCAAGCACAACAGATGCCTTGTTTATATAAATTTATCCTGGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038131.10 |
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| CDS-3UTR TCA 90 bp | CCCAGGATAAATTTATATAAACAAGGCATCTGTTGTGCTTGGAGGAGCTGCTGGCTGCGTAAGGCATGCTaGGCATCCTTTGTGAGTTTG | + |
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Preference number: 4 (lower is better) Translates to: PRINLYKQGICCAWRSCWLRKAC*ASFVSL Trigger: CAAACTCACAAAGGATGCTCAGCATGCCTTACGCAG...CCAGCAGCTCCTCCAAGCACAACAGATGCCTTGTTTATATAAATTTATCCTGGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038131.10 |
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| CDS-3UTR GCA 90 bp | CCCAGGATAAATTTATATAAACAAGGCATCTGTTGTGCTTGGAGGAGCTGCTGGCCAGACCTTCCTTCCTaGAGACAGTGGATAGTACAC | + |
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Preference number: 4 (lower is better) Translates to: PRINLYKQGICCAWRSCWPDLPS*RQWIVH Trigger: GTGTACTATCCACTGTCTGCAGGAAGGAAGGTCTGG...CCAGCAGCTCCTCCAAGCACAACAGATGCCTTGTTTATATAAATTTATCCTGGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038131.10 |
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| CDS-3UTR GCA 90 bp | CCCAGGATAAATTTATATAAACAAGGCATCTGTTGTGCTTGGAGGAGCTGCTGGGTAAAAGGGTATTGCTaGACTCTGCAGGCCTCACAC | + |
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Preference number: 4 (lower is better) Translates to: PRINLYKQGICCAWRSCWVKGYC*TLQASH Trigger: GTGTGAGGCCTGCAGAGTGCAGCAATACCCTTTTAC...CCAGCAGCTCCTCCAAGCACAACAGATGCCTTGTTTATATAAATTTATCCTGGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038131.10 |
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| CDS-3UTR GCA 90 bp | CCCAGGATAAATTTATATAAACAAGGCATCTGTTGTGCTTGGAGGAGCTGCTGGACTTCCCCTTTCAGCTaGCCATCACAGTTATGGAGG | + |
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Preference number: 4 (lower is better) Translates to: PRINLYKQGICCAWRSCWTSPFS*PSQLWR Trigger: CCTCCATAACTGTGATGGGCAGCTGAAAGGGGAAGT...CCAGCAGCTCCTCCAAGCACAACAGATGCCTTGTTTATATAAATTTATCCTGGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038131.10 |
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| CDS-3UTR GCA 90 bp | CCCAGGATAAATTTATATAAACAAGGCATCTGTTGTGCTTGGAGGAGCTGCTGGGATAAATGGCTTTGCTaGCCAGCTGTAGTCGGTGCT | + |
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Preference number: 4 (lower is better) Translates to: PRINLYKQGICCAWRSCWDKWLC*PAVVGA Trigger: AGCACCGACTACAGCTGGGCAGCAAAGCCATTTATC...CCAGCAGCTCCTCCAAGCACAACAGATGCCTTGTTTATATAAATTTATCCTGGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038131.10 |
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| CDS-3UTR CCA 90 bp | CCCAGGATAAATTTATATAAACAAGGCATCTGTTGTGCTTGGAGGAGCTGCTGGTCGGGGGTATCACCTTaGATGTGGAATTGCAGCACA | + |
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Preference number: 4 (lower is better) Translates to: PRINLYKQGICCAWRSCWSGVSP*MWNCST Trigger: TGTGCTGCAATTCCACATCCAAGGTGATACCCCCGA...CCAGCAGCTCCTCCAAGCACAACAGATGCCTTGTTTATATAAATTTATCCTGGG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000038131.10 |
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| CDS-3UTR CCA 90 bp | CCCAGGATAAATTTATATAAACAAGGCATCTGTTGTGCTTGGAGGAGCTGCTGGTTCAAGGAGCCTCTGTaGCGTCTGCTGACTGACAAT | + |
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Preference number: 4 (lower is better) Translates to: PRINLYKQGICCAWRSCWFKEPL*RLLTDN Trigger: ATTGTCAGTCAGCAGACGCCACAGAGGCTCCTTGAA...CCAGCAGCTCCTCCAAGCACAACAGATGCCTTGTTTATATAAATTTATCCTGGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038131.10 |
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| CDS-3UTR CCA 90 bp | CCCAGGATAAATTTATATAAACAAGGCATCTGTTGTGCTTGGAGGAGCTGCTGGTGCCCATCACAGTTATaGAGGAGTTCTGAGAGGAGG | + |
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Preference number: 4 (lower is better) Translates to: PRINLYKQGICCAWRSCWCPSQL*RSSERR Trigger: CCTCCTCTCAGAACTCCTCCATAACTGTGATGGGCA...CCAGCAGCTCCTCCAAGCACAACAGATGCCTTGTTTATATAAATTTATCCTGGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038131.10 |
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| CDS-3UTR TCA 90 bp | CCCAGGATAAATTTATATAAACAAGGCATCTGTTGTGCTTGGAGGAGCTGCTGGCCATATACTAAGAGGTaGGGAAAGTCTCCACACTGC | + |
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Preference number: 4 (lower is better) Translates to: PRINLYKQGICCAWRSCWPYTKR*GKSPHC Trigger: GCAGTGTGGAGACTTTCCTCACCTCTTAGTATATGG...CCAGCAGCTCCTCCAAGCACAACAGATGCCTTGTTTATATAAATTTATCCTGGG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038131.10 |
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| CDS-3UTR TCA 90 bp | CCCAGGATAAATTTATATAAACAAGGCATCTGTTGTGCTTGGAGGAGCTGCTGGGTTATGGAGGAGTTCTaGGAGGAGGCCCTTCATTAT | + |
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Preference number: 4 (lower is better) Translates to: PRINLYKQGICCAWRSCWVMEEF*EEALHY Trigger: ATAATGAAGGGCCTCCTCTCAGAACTCCTCCATAAC...CCAGCAGCTCCTCCAAGCACAACAGATGCCTTGTTTATATAAATTTATCCTGGG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038131.10 |
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| CDS-3UTR CCA 90 bp | CCCAGGATAAATTTATATAAACAAGGCATCTGTTGTGCTTGGAGGAGCTGCTGGTCAAGTTGTTGTGACTaGGCCACTGTCTTCAGCATC | + |
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Preference number: 4 (lower is better) Translates to: PRINLYKQGICCAWRSCWSSCCD*ATVFSI Trigger: GATGCTGAAGACAGTGGCCCAGTCACAACAACTTGA...CCAGCAGCTCCTCCAAGCACAACAGATGCCTTGTTTATATAAATTTATCCTGGG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038131.10 |
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| CDS-3UTR TCA 90 bp | CCCAGGATAAATTTATATAAACAAGGCATCTGTTGTGCTTGGAGGAGCTGCTGGCCAGTCCATCCTCCATaGACTTCTTATAAAGTGCCA | + |
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Preference number: 4 (lower is better) Translates to: PRINLYKQGICCAWRSCWPVHPP*TSYKVP Trigger: TGGCACTTTATAAGAAGTTCATGGAGGATGGACTGG...CCAGCAGCTCCTCCAAGCACAACAGATGCCTTGTTTATATAAATTTATCCTGGG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038131.10 |
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| CDS-3UTR GCA 90 bp | CCCAGGATAAATTTATATAAACAAGGCATCTGTTGTGCTTGGAGGAGCTGCTGGACTGACAATAGCATTTaGGGTCTCCCTCAGATACAC | + |
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Preference number: 4 (lower is better) Translates to: PRINLYKQGICCAWRSCWTDNSI*GLPQIH Trigger: GTGTATCTGAGGGAGACCGCAAATGCTATTGTCAGT...CCAGCAGCTCCTCCAAGCACAACAGATGCCTTGTTTATATAAATTTATCCTGGG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038131.10 |
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| CDS-3UTR GCA 90 bp | CCCAGGATAAATTTATATAAACAAGGCATCTGTTGTGCTTGGAGGAGCTGCTGGAATGATAAATGGCTTTaGTGCCCAGCTGTAGTCGGT | + |
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Preference number: 4 (lower is better) Translates to: PRINLYKQGICCAWRSCWNDKWL*CPAVVG Trigger: ACCGACTACAGCTGGGCAGCAAAGCCATTTATCATT...CCAGCAGCTCCTCCAAGCACAACAGATGCCTTGTTTATATAAATTTATCCTGGG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038131.10 |
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| CDS-3UTR TCA 90 bp | CCCAGGATAAATTTATATAAACAAGGCATCTGTTGTGCTTGGAGGAGCTGCTGGGGGGTTGTGATAGTCTaGTGCTCAATTCTCAGTTTT | + |
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Preference number: 4 (lower is better) Translates to: PRINLYKQGICCAWRSCWGVVIV*CSILSF Trigger: AAAACTGAGAATTGAGCATCAGACTATCACAACCCC...CCAGCAGCTCCTCCAAGCACAACAGATGCCTTGTTTATATAAATTTATCCTGGG 43% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt. Matches the following 1 transcripts: ENSMUST00000038131.10 |
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| CDS-3UTR CCA 90 bp | CCCAGGATAAATTTATATAAACAAGGCATCTGTTGTGCTTGGAGGAGCTGCTGGGTCTCTGGGATTTCTTaGTCTTCCGTAAAAGGGTAT | + |
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Preference number: 4 (lower is better) Translates to: PRINLYKQGICCAWRSCWVSGIS*SSVKGY Trigger: ATACCCTTTTACGGAAGACCAAGAAATCCCAGAGAC...CCAGCAGCTCCTCCAAGCACAACAGATGCCTTGTTTATATAAATTTATCCTGGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038131.10 |
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| CDS-3UTR CCA 90 bp | CCCAGGATAAATTTATATAAACAAGGCATCTGTTGTGCTTGGAGGAGCTGCTGGCTTCCAAATGATAAATaGCTTTGCTGCCCAGCTGTA | + |
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Preference number: 4 (lower is better) Translates to: PRINLYKQGICCAWRSCWLPNDK*LCCPAV Trigger: TACAGCTGGGCAGCAAAGCCATTTATCATTTGGAAG...CCAGCAGCTCCTCCAAGCACAACAGATGCCTTGTTTATATAAATTTATCCTGGG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038131.10 |
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| CDS-3UTR TCA 90 bp | CCCAGGATAAATTTATATAAACAAGGCATCTGTTGTGCTTGGAGGAGCTGCTGGTCAATAATACCACTTTaGAGTCTCTTTGTGAGCTGG | + |
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Preference number: 4 (lower is better) Translates to: PRINLYKQGICCAWRSCWSIIPL*SLFVSW Trigger: CCAGCTCACAAAGAGACTTCAAAGTGGTATTATTGA...CCAGCAGCTCCTCCAAGCACAACAGATGCCTTGTTTATATAAATTTATCCTGGG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038131.10 |
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| CDS-3UTR GCA 90 bp | CCCAGGATAAATTTATATAAACAAGGCATCTGTTGTGCTTGGAGGAGCTGCTGGAAGGTGGTAGTTGCTTaGAATGGTGCTGATTTCAAT | + |
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Preference number: 4 (lower is better) Translates to: PRINLYKQGICCAWRSCWKVVVA*NGADFN Trigger: ATTGAAATCAGCACCATTGCAAGCAACTACCACCTT...CCAGCAGCTCCTCCAAGCACAACAGATGCCTTGTTTATATAAATTTATCCTGGG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038131.10 |
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| CDS-3UTR CCA 90 bp | CCCAGGATAAATTTATATAAACAAGGCATCTGTTGTGCTTGGAGGAGCTGCTGGAGTCTCTTTGTGAGCTaGTTTCAAGTTGTTGTGACT | + |
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Preference number: 4 (lower is better) Translates to: PRINLYKQGICCAWRSCWSLFVS*FQVVVT Trigger: AGTCACAACAACTTGAAACCAGCTCACAAAGAGACT...CCAGCAGCTCCTCCAAGCACAACAGATGCCTTGTTTATATAAATTTATCCTGGG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038131.10 |
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| CDS-3UTR GCA 90 bp | CCCAGGATAAATTTATATAAACAAGGCATCTGTTGTGCTTGGAGGAGCTGCTGGAAACTTCGCCACAAATaGTTCCAAATGATAAATGGC | + |
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Preference number: 4 (lower is better) Translates to: PRINLYKQGICCAWRSCWKLRHK*FQMING Trigger: GCCATTTATCATTTGGAAGCATTTGTGGCGAAGTTT...CCAGCAGCTCCTCCAAGCACAACAGATGCCTTGTTTATATAAATTTATCCTGGG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038131.10 |
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| CDS CCA 90 bp | GCGGTCTCCCTCAGATACACCTCCCAGTCTGTCTCTGGGATTTCTTaGTCTTCCGTAAAAGGGTATTGCTGCACTCTGCAGGCCTCACAC | + |
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Preference number: 5 (lower is better) Translates to: AVSLRYTSQSVSGIS*SSVKGYCCTLQASH Trigger: GTGTGAGGCCTGCAGAGTGCAGCAATACCCTTTTACGGAAGACCAAGAAATCCCAGAGACAGACTGGGAGGTGTATCTGAGGGAGACCGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038131.10 |
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| CDS GCA 90 bp | GACTTCAAGGAGCCTCTGTGGCGTCTGCTGACTGACAATAGCATTTaGGGTCTCCCTCAGATACACCTCCCAGTCTGTCTCTGGGATTTC | + |
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Preference number: 5 (lower is better) Translates to: DFKEPLWRLLTDNSI*GLPQIHLPVCLWDF Trigger: GAAATCCCAGAGACAGACTGGGAGGTGTATCTGAGGGAGACCGCAAATGCTATTGTCAGTCAGCAGACGCCACAGAGGCTCCTTGAAGTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038131.10 |
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| CDS-3UTR CAA 90 bp | CCCAGGATAAATTTATATAAACAAGGCATCTGTTGTGCTTGGAGGAGCTGCTGGCCACACTGCACCAGGTaGCGCAGCTGTGCTGCCTGT | + |
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Preference number: 5 (lower is better) Translates to: PRINLYKQGICCAWRSCWPHCTR*RSCAAC Trigger: ACAGGCAGCACAGCTGCGCAACCTGGTGCAGTGTGG...CCAGCAGCTCCTCCAAGCACAACAGATGCCTTGTTTATATAAATTTATCCTGGG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038131.10 |
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| CDS CCA 90 bp | AATAGCATTTGCGGTCTCCCTCAGATACACCTCCCAGTCTGTCTCTaGGATTTCTTGGTCTTCCGTAAAAGGGTATTGCTGCACTCTGCA | + |
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Preference number: 5 (lower is better) Translates to: NSICGLPQIHLPVCL*DFLVFRKRVLLHSA Trigger: TGCAGAGTGCAGCAATACCCTTTTACGGAAGACCAAGAAATCCCAGAGACAGACTGGGAGGTGTATCTGAGGGAGACCGCAAATGCTATT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038131.10 |
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| CDS-3UTR CAA 90 bp | CCCAGGATAAATTTATATAAACAAGGCATCTGTTGTGCTTGGAGGAGCTGCTGGTGTCTCTGGGATTTCTaGGTCTTCCGTAAAAGGGTA | + |
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Preference number: 5 (lower is better) Translates to: PRINLYKQGICCAWRSCWCLWDF*VFRKRV Trigger: TACCCTTTTACGGAAGACCAAGAAATCCCAGAGACA...CCAGCAGCTCCTCCAAGCACAACAGATGCCTTGTTTATATAAATTTATCCTGGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038131.10 |
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| CDS-3UTR CAA 90 bp | CCCAGGATAAATTTATATAAACAAGGCATCTGTTGTGCTTGGAGGAGCTGCTGGGTCAATAATACCACTTaGAAGTCTCTTTGTGAGCTG | + |
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Preference number: 5 (lower is better) Translates to: PRINLYKQGICCAWRSCWVNNTT*KSLCEL Trigger: CAGCTCACAAAGAGACTTCAAAGTGGTATTATTGAC...CCAGCAGCTCCTCCAAGCACAACAGATGCCTTGTTTATATAAATTTATCCTGGG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038131.10 |
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| CDS CAA 90 bp | GGCACACGAACTGCCAGGCACCTGCTTCGGATCGGGGGTATCACCTaGGATGTGGAATTGCAGCACAAGATGAGCCTGCAGGTAGACATG | + |
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Preference number: 6 (lower is better) Translates to: GTRTARHLLRIGGIT*DVELQHKMSLQVDM Trigger: CATGTCTACCTGCAGGCTCATCTTGTGCTGCAATTCCACATCCAAGGTGATACCCCCGATCCGAAGCAGGTGCCTGGCAGTTCGTGTGCC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000038131.10 |
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| CDS CAA 72 bp | ACTGCCAGGCACCTGCTTCGGATCGGGGGTATCACCTaGGATGTGGAATTGCAGCACAAGATGAGCCTGCAG | + |
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Preference number: 6 (lower is better) Translates to: TARHLLRIGGIT*DVELQHKMSLQ Trigger: CTGCAGGCTCATCTTGTGCTGCAATTCCACATCCAAGGTGATACCCCCGATCCGAAGCAGGTGCCTGGCAGT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000038131.10 |
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| CDS GCA 72 bp | GAGCCTCTGTGGCGTCTGCTGACTGACAATAGCATTTaGGGTCTCCCTCAGATACACCTCCCAGTCTGTCTC | + |
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Preference number: 6 (lower is better) Translates to: EPLWRLLTDNSI*GLPQIHLPVCL Trigger: GAGACAGACTGGGAGGTGTATCTGAGGGAGACCGCAAATGCTATTGTCAGTCAGCAGACGCCACAGAGGCTC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038131.10 |
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| CDS TCA 72 bp | CTTCCACGGACTTCAAGGAGCCTCTGTGGCGTCTGCTaGCTGACAATAGCATTTGCGGTCTCCCTCAGATAC | + |
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Preference number: 6 (lower is better) Translates to: LPRTSRSLCGVC*LTIAFAVSLRY Trigger: GTATCTGAGGGAGACCGCAAATGCTATTGTCAGTCAGCAGACGCCACAGAGGCTCCTTGAAGTCCGTGGAAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038131.10 |
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| CDS CAA 90 bp | TGCGGTCTCCCTCAGATACACCTCCCAGTCTGTCTCTGGGATTTCTaGGTCTTCCGTAAAAGGGTATTGCTGCACTCTGCAGGCCTCACA | + |
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Preference number: 6 (lower is better) Translates to: CGLPQIHLPVCLWDF*VFRKRVLLHSAGLT Trigger: TGTGAGGCCTGCAGAGTGCAGCAATACCCTTTTACGGAAGACCAAGAAATCCCAGAGACAGACTGGGAGGTGTATCTGAGGGAGACCGCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038131.10 |
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| CDS TCA 72 bp | AGTTGTTGTGACTGGGCCACTGTCTTCAGCATCTCCTaGATTACAACTCGGTCGCTGTTCCCCGCATCACTG | + |
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Preference number: 6 (lower is better) Translates to: SCCDWATVFSIS*ITTRSLFPASL Trigger: CAGTGATGCGGGGAACAGCGACCGAGTTGTAATTCAGGAGATGCTGAAGACAGTGGCCCAGTCACAACAACT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038131.10 |
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| CDS CAA 90 bp | GCCAGGCACCTGCTTCGGATCGGGGGTATCACCTTGGATGTGGAATaGCAGCACAAGATGAGCCTGCAGGTAGACATGTATTTCTCCATA | + |
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Preference number: 6 (lower is better) Translates to: ARHLLRIGGITLDVE*QHKMSLQVDMYFSI Trigger: TATGGAGAAATACATGTCTACCTGCAGGCTCATCTTGTGCTGCAATTCCACATCCAAGGTGATACCCCCGATCCGAAGCAGGTGCCTGGC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000038131.10 |
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| CDS CCA 72 bp | TCGAAGGGAGAGCCAGACCTTCCTTCCTGCAGACAGTaGATAGTACACTGCAAATATCTTCGATGCTGGGAG | + |
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Preference number: 6 (lower is better) Translates to: SKGEPDLPSCRQ*IVHCKYLRCWE Trigger: CTCCCAGCATCGAAGATATTTGCAGTGTACTATCCACTGTCTGCAGGAAGGAAGGTCTGGCTCTCCCTTCGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038131.10 |
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| CDS CCA 72 bp | TGCGGTCTCCCTCAGATACACCTCCCAGTCTGTCTCTaGGATTTCTTGGTCTTCCGTAAAAGGGTATTGCTG | + |
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Preference number: 6 (lower is better) Translates to: CGLPQIHLPVCL*DFLVFRKRVLL Trigger: CAGCAATACCCTTTTACGGAAGACCAAGAAATCCCAGAGACAGACTGGGAGGTGTATCTGAGGGAGACCGCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038131.10 |
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| CDS CAA 72 bp | CTGCTTCGGATCGGGGGTATCACCTTGGATGTGGAATaGCAGCACAAGATGAGCCTGCAGGTAGACATGTAT | + |
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Preference number: 6 (lower is better) Translates to: LLRIGGITLDVE*QHKMSLQVDMY Trigger: ATACATGTCTACCTGCAGGCTCATCTTGTGCTGCAATTCCACATCCAAGGTGATACCCCCGATCCGAAGCAG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000038131.10 |
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| CDS CCA 72 bp | CTCAGATACACCTCCCAGTCTGTCTCTGGGATTTCTTaGTCTTCCGTAAAAGGGTATTGCTGCACTCTGCAG | + |
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Preference number: 6 (lower is better) Translates to: LRYTSQSVSGIS*SSVKGYCCTLQ Trigger: CTGCAGAGTGCAGCAATACCCTTTTACGGAAGACCAAGAAATCCCAGAGACAGACTGGGAGGTGTATCTGAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038131.10 |
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