RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for REXO4 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000052406

Ensembl transcript IDs: ENSMUST00000064244.11, ENSMUST00000114020.10, ENSMUST00000136710.2

Found 129 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp ATAGACCTGACAGGCCTCATAACCCCATCCCAACTGCCACTGGATTaGGAAGTCTCTGACGGACAGGGTGGTGGCGACAGCAGTAGGATG +
Preference number: 1 (lower is better)
Translates to: IDLTGLITPSQLPLD*EVSDGQGGGDSSRM
Trigger: CATCCTACTGCTGTCGCCACCACCCTGTCCGTCAGAGACTTCTCAATCCAGTGGCAGTTGGGATGGGGTTATGAGGCCTGTCAGGTCTAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064244.11
ENSMUST00000114020.10
3UTR CCA 90 bp TCACTCTGCAATTGCTGCTACCCAGAACAGCTGCTGGCAGGACAGTaGGAAGATGGCCTTTCTGCTTACACTGTTCCACATGGTAGGCTC +
Preference number: 1 (lower is better)
Translates to: SLCNCCYPEQLLAGQ*EDGLSAYTVPHGRL
Trigger: GAGCCTACCATGTGGAACAGTGTAAGCAGAAAGGCCATCTTCCCACTGTCCTGCCAGCAGCTGTTCTGGGTAGCAGCAATTGCAGAGTGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064244.11
ENSMUST00000114020.10
3UTR-3UTR CCA 90 bp GGTCACTCTGCAATTGCTGCTACCCAGAACAGCTGCTGGCAGGACAGTGGGAAGGGGCGGTTGCTGTGCTaGCCAGACTGGTTTGCAGCA +
Preference number: 2 (lower is better)
Translates to: GHSAIAATQNSCWQDSGKGRLLC*PDWFAA
Trigger: TGCTGCAAACCAGTCTGGCCAGCACAGCAACCGCCC...CTTCCCACTGTCCTGCCAGCAGCTGTTCTGGGTAGCAGCAATTGCAGAGTGACC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064244.11
ENSMUST00000114020.10
3UTR-3UTR TCA 90 bp CCCTGGGTAGTTCAGGAGGAAGTTCCCGCAGCTCACATGCCTGCAGCCATGGCTCAACTGCCACTGGATTaGGAAGTCTCTGACGGACAG +
Preference number: 2 (lower is better)
Translates to: PWVVQEEVPAAHMPAAMAQLPLD*EVSDGQ
Trigger: CTGTCCGTCAGAGACTTCTCAATCCAGTGGCAGTTG...AGCCATGGCTGCAGGCATGTGAGCTGCGGGAACTTCCTCCTGAACTACCCAGGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064244.11
ENSMUST00000114020.10
3UTR-3UTR GCA 90 bp GGTCACTCTGCAATTGCTGCTACCCAGAACAGCTGCTGGCAGGACAGTGGGAAGCTGGCCAGACTGGTTTaGAGCAGACTGAACGCCCTT +
Preference number: 2 (lower is better)
Translates to: GHSAIAATQNSCWQDSGKLARLV*SRLNAL
Trigger: AAGGGCGTTCAGTCTGCTGCAAACCAGTCTGGCCAG...CTTCCCACTGTCCTGCCAGCAGCTGTTCTGGGTAGCAGCAATTGCAGAGTGACC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064244.11
ENSMUST00000114020.10
3UTR-3UTR TCA 90 bp TCACTGGTCACTCTGCAATTGCTGCTACCCAGAACAGCTGCTGGCAGGACAGTGCTGCAGCCATGGCTCTaGGAAAGCTCACCAAAGACA +
Preference number: 2 (lower is better)
Translates to: SLVTLQLLLPRTAAGRTVLQPWL*ESSPKT
Trigger: TGTCTTTGGTGAGCTTTCTCAGAGCCATGGCTGCAG...CACTGTCCTGCCAGCAGCTGTTCTGGGTAGCAGCAATTGCAGAGTGACCAGTGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064244.11
ENSMUST00000114020.10
3UTR-3UTR GCA 90 bp GGCCAAGCAAAGGACAAAGGAGTGGGAAAGGACCTCCAGCCCAGTAGCTTTAAGCGCAGCTCACATGCCTaGAGCCATGGCTCTGAGAAA +
Preference number: 2 (lower is better)
Translates to: GQAKDKGVGKDLQPSSFKRSSHA*SHGSEK
Trigger: TTTCTCAGAGCCATGGCTGCAGGCATGTGAGCTGCG...CTTAAAGCTACTGGGCTGGAGGTCCTTTCCCACTCCTTTGTCCTTTGCTTGGCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064244.11
ENSMUST00000114020.10
3UTR-3UTR GCA 90 bp GGCCAAGCAAAGGACAAAGGAGTGGGAAAGGACCTCCAGCCCAGTAGCTTTAAGAATGGGCGGTTGCTGTaGTGGCCAGACTGGTTTGCA +
Preference number: 2 (lower is better)
Translates to: GQAKDKGVGKDLQPSSFKNGRLL*WPDWFA
Trigger: TGCAAACCAGTCTGGCCAGCACAGCAACCGCCCATT...CTTAAAGCTACTGGGCTGGAGGTCCTTTCCCACTCCTTTGTCCTTTGCTTGGCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064244.11
ENSMUST00000114020.10
3UTR-3UTR TCA 90 bp GGCCAAGCAAAGGACAAAGGAGTGGGAAAGGACCTCCAGCCCAGTAGCTTTAAGCTGCAGCCATGGCTCTaGGAAAGCTCACCAAAGACA +
Preference number: 2 (lower is better)
Translates to: GQAKDKGVGKDLQPSSFKLQPWL*ESSPKT
Trigger: TGTCTTTGGTGAGCTTTCTCAGAGCCATGGCTGCAG...CTTAAAGCTACTGGGCTGGAGGTCCTTTCCCACTCCTTTGTCCTTTGCTTGGCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064244.11
ENSMUST00000114020.10
3UTR-3UTR GCA 90 bp GGCCAAGCAAAGGACAAAGGAGTGGGAAAGGACCTCCAGCCCAGTAGCTTTAAGACCTCAACACACAGGTaGTGGATGATTAGGCCCTGG +
Preference number: 2 (lower is better)
Translates to: GQAKDKGVGKDLQPSSFKTSTHR*WMIRPW
Trigger: CCAGGGCCTAATCATCCAGCACCTGTGTGTTGAGGT...CTTAAAGCTACTGGGCTGGAGGTCCTTTCCCACTCCTTTGTCCTTTGCTTGGCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064244.11
ENSMUST00000114020.10
3UTR-3UTR GCA 90 bp TCACTGGTCACTCTGCAATTGCTGCTACCCAGAACAGCTGCTGGCAGGACAGTGAGCAGACATAGACTCTaGAGCACTCTCCTCCATTCC +
Preference number: 2 (lower is better)
Translates to: SLVTLQLLLPRTAAGRTVSRHRL*STLLHS
Trigger: GGAATGGAGGAGAGTGCTGCAGAGTCTATGTCTGCT...CACTGTCCTGCCAGCAGCTGTTCTGGGTAGCAGCAATTGCAGAGTGACCAGTGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064244.11
ENSMUST00000114020.10
3UTR-3UTR CCA 90 bp GTTCTCCTTCCTCGAACCTACACCCCTGACTTCTGCCCTGTATCTGACCAGTCTTCAACACACAGGTGCTaGATGATTAGGCCCTGGGTA +
Preference number: 2 (lower is better)
Translates to: VLLPRTYTPDFCPVSDQSSTHRC*MIRPWV
Trigger: TACCCAGGGCCTAATCATCCAGCACCTGTGTGTTGA...AGACTGGTCAGATACAGGGCAGAAGTCAGGGGTGTAGGTTCGAGGAAGGAGAAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064244.11
ENSMUST00000114020.10
3UTR-3UTR GCA 90 bp GACATAGACTCTGCAGCACTCTCCTCCATTCCAATGATGTTCTCCTTCCTCGAACGCAGCTCACATGCCTaGAGCCATGGCTCTGAGAAA +
Preference number: 2 (lower is better)
Translates to: DIDSAALSSIPMMFSFLERSSHA*SHGSEK
Trigger: TTTCTCAGAGCCATGGCTGCAGGCATGTGAGCTGCG...TTCGAGGAAGGAGAACATCATTGGAATGGAGGAGAGTGCTGCAGAGTCTATGTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064244.11
ENSMUST00000114020.10
3UTR-3UTR CCA 90 bp GAACCTACACCCCTGACTTCTGCCCTGTATCTGACCAGTCTACCTCAACACACACATCCCAACTGCCACTaGATTGAGAAGTCTCTGACG +
Preference number: 2 (lower is better)
Translates to: EPTPLTSALYLTSLPQHTHPNCH*IEKSLT
Trigger: CGTCAGAGACTTCTCAATCCAGTGGCAGTTGGGATG...TGTGTGTTGAGGTAGACTGGTCAGATACAGGGCAGAAGTCAGGGGTGTAGGTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064244.11
ENSMUST00000114020.10
3UTR-3UTR TCA 90 bp GACATAGACTCTGCAGCACTCTCCTCCATTCCAATGATGTTCTCCTTCCTCGAACAACTGCCACTGGATTaGGAAGTCTCTGACGGACAG +
Preference number: 2 (lower is better)
Translates to: DIDSAALSSIPMMFSFLEQLPLD*EVSDGQ
Trigger: CTGTCCGTCAGAGACTTCTCAATCCAGTGGCAGTTG...TTCGAGGAAGGAGAACATCATTGGAATGGAGGAGAGTGCTGCAGAGTCTATGTC
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064244.11
ENSMUST00000114020.10
3UTR-3UTR CCA 90 bp GACATAGACTCTGCAGCACTCTCCTCCATTCCAATGATGTTCTCCTTCCTCGAACATCCCAACTGCCACTaGATTGAGAAGTCTCTGACG +
Preference number: 2 (lower is better)
Translates to: DIDSAALSSIPMMFSFLEHPNCH*IEKSLT
Trigger: CGTCAGAGACTTCTCAATCCAGTGGCAGTTGGGATG...TTCGAGGAAGGAGAACATCATTGGAATGGAGGAGAGTGCTGCAGAGTCTATGTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064244.11
ENSMUST00000114020.10
3UTR-3UTR TCA 90 bp ATCCATCCATTTATTTTTGACAGTTCTAGGAAAGGATACCAGGGTCTTACACTTCTTAAGGGAAGGTGCTaGGTGCCCTGGCTGAGACCA +
Preference number: 2 (lower is better)
Translates to: IHPFIFDSSRKGYQGLTLLKGRC*VPWLRP
Trigger: TGGTCTCAGCCAGGGCACTCAGCACCTTCCCTTAAG...AAGTGTAAGACCCTGGTATCCTTTCCTAGAACTGTCAAAAATAAATGGATGGAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000064244.11
ENSMUST00000114020.10
3UTR-3UTR GCA 90 bp ATCCATCCATTTATTTTTGACAGTTCTAGGAAAGGATACCAGGGTCTTACACTTAATGGGCGGTTGCTGTaGTGGCCAGACTGGTTTGCA +
Preference number: 2 (lower is better)
Translates to: IHPFIFDSSRKGYQGLTLNGRLL*WPDWFA
Trigger: TGCAAACCAGTCTGGCCAGCACAGCAACCGCCCATT...AAGTGTAAGACCCTGGTATCCTTTCCTAGAACTGTCAAAAATAAATGGATGGAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000064244.11
ENSMUST00000114020.10
3UTR-3UTR CCA 90 bp ATCCATCCATTTATTTTTGACAGTTCTAGGAAAGGATACCAGGGTCTTACACTTACCCAGAACAGCTGCTaGCAGGACAGTGGGAAGATG +
Preference number: 2 (lower is better)
Translates to: IHPFIFDSSRKGYQGLTLTQNSC*QDSGKM
Trigger: CATCTTCCCACTGTCCTGCCAGCAGCTGTTCTGGGT...AAGTGTAAGACCCTGGTATCCTTTCCTAGAACTGTCAAAAATAAATGGATGGAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000064244.11
ENSMUST00000114020.10
3UTR-3UTR CCA 90 bp ATCCATCCATTTATTTTTGACAGTTCTAGGAAAGGATACCAGGGTCTTACACTTCAAAGGACAAAGGAGTaGGAAAGGACCTCCAGCCCA +
Preference number: 2 (lower is better)
Translates to: IHPFIFDSSRKGYQGLTLQRTKE*ERTSSP
Trigger: TGGGCTGGAGGTCCTTTCCCACTCCTTTGTCCTTTG...AAGTGTAAGACCCTGGTATCCTTTCCTAGAACTGTCAAAAATAAATGGATGGAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000064244.11
ENSMUST00000114020.10
3UTR GCA 72 bp CCTCAATGGGCGGTTGCTGTGCTGGCCAGACTGGTTTaGAGCAGACTGAACGCCCTTAGCCTGGATCCCTTG +
Preference number: 3 (lower is better)
Translates to: PQWAVAVLARLV*SRLNALSLDPL
Trigger: CAAGGGATCCAGGCTAAGGGCGTTCAGTCTGCTGCAAACCAGTCTGGCCAGCACAGCAACCGCCCATTGAGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064244.11
ENSMUST00000114020.10
3UTR GCA 72 bp GGTAGTTCAGGAGGAAGTTCCCGCAGCTCACATGCCTaGAGCCATGGCTCTGAGAAAGCTCACCAAAGACAG +
Preference number: 3 (lower is better)
Translates to: GSSGGSSRSSHA*SHGSEKAHQRQ
Trigger: CTGTCTTTGGTGAGCTTTCTCAGAGCCATGGCTGCAGGCATGTGAGCTGCGGGAACTTCCTCCTGAACTACC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064244.11
ENSMUST00000114020.10
3UTR TCA 72 bp CAGAGAAGGCGCTTCTTGCTCCTTAAGGGAAGGTGCTaGGTGCCCTGGCTGAGACCAGCTATGCTCATTGTT +
Preference number: 3 (lower is better)
Translates to: QRRRFLLLKGRC*VPWLRPAMLIV
Trigger: AACAATGAGCATAGCTGGTCTCAGCCAGGGCACTCAGCACCTTCCCTTAAGGAGCAAGAAGCGCCTTCTCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064244.11
ENSMUST00000114020.10
3UTR CCA 72 bp GGTCACTCTGCAATTGCTGCTACCCAGAACAGCTGCTaGCAGGACAGTGGGAAGATGGCCTTTCTGCTTACA +
Preference number: 3 (lower is better)
Translates to: GHSAIAATQNSC*QDSGKMAFLLT
Trigger: TGTAAGCAGAAAGGCCATCTTCCCACTGTCCTGCCAGCAGCTGTTCTGGGTAGCAGCAATTGCAGAGTGACC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064244.11
ENSMUST00000114020.10
3UTR GCA 72 bp AGCCCAGTAGCTTTAAGAAAGTCCTCAATGGGCGGTTaGTGTGCTGGCCAGACTGGTTTGCAGCAGACTGAA +
Preference number: 3 (lower is better)
Translates to: SPVALRKSSMGG*CAGQTGLQQTE
Trigger: TTCAGTCTGCTGCAAACCAGTCTGGCCAGCACAGCAACCGCCCATTGAGGACTTTCTTAAAGCTACTGGGCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064244.11
ENSMUST00000114020.10
3UTR TCA 72 bp TCTTGCTCCTTAAGGGAAGGTGCTGAGTGCCCTGGCTaGGACCAGCTATGCTCATTGTTAAGTGGTAGCACA +
Preference number: 3 (lower is better)
Translates to: SCSLREGAECPG*DQLCSLLSGST
Trigger: TGTGCTACCACTTAACAATGAGCATAGCTGGTCTCAGCCAGGGCACTCAGCACCTTCCCTTAAGGAGCAAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064244.11
ENSMUST00000114020.10
3UTR CCA 72 bp CCTGTATCTGACCAGTCTACCTCAACACACAGGTGCTaGATGATTAGGCCCTGGGTAGTTCAGGAGGAAGTT +
Preference number: 3 (lower is better)
Translates to: PVSDQSTSTHRC*MIRPWVVQEEV
Trigger: AACTTCCTCCTGAACTACCCAGGGCCTAATCATCCAGCACCTGTGTGTTGAGGTAGACTGGTCAGATACAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064244.11
ENSMUST00000114020.10
3UTR CCA 72 bp AATTGCTGCTACCCAGAACAGCTGCTGGCAGGACAGTaGGAAGATGGCCTTTCTGCTTACACTGTTCCACAT +
Preference number: 3 (lower is better)
Translates to: NCCYPEQLLAGQ*EDGLSAYTVPH
Trigger: ATGTGGAACAGTGTAAGCAGAAAGGCCATCTTCCCACTGTCCTGCCAGCAGCTGTTCTGGGTAGCAGCAATT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064244.11
ENSMUST00000114020.10
3UTR-3UTR CAA 90 bp ATCCATCCATTTATTTTTGACAGTTCTAGGAAAGGATACCAGGGTCTTACACTTGTCCTCAATGGGCGGTaGCTGTGCTGGCCAGACTGG +
Preference number: 3 (lower is better)
Translates to: IHPFIFDSSRKGYQGLTLVLNGR*LCWPDW
Trigger: CCAGTCTGGCCAGCACAGCAACCGCCCATTGAGGAC...AAGTGTAAGACCCTGGTATCCTTTCCTAGAACTGTCAAAAATAAATGGATGGAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000064244.11
ENSMUST00000114020.10
3UTR-3UTR CAA 90 bp ATCCATCCATTTATTTTTGACAGTTCTAGGAAAGGATACCAGGGTCTTACACTTGACCAGCTATGCTCATaGTTAAGTGGTAGCACAGGT +
Preference number: 3 (lower is better)
Translates to: IHPFIFDSSRKGYQGLTLDQLCS*LSGSTG
Trigger: ACCTGTGCTACCACTTAACAATGAGCATAGCTGGTC...AAGTGTAAGACCCTGGTATCCTTTCCTAGAACTGTCAAAAATAAATGGATGGAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000064244.11
ENSMUST00000114020.10
CDS-3UTR CCA 90 bp CCCTGGGTAGTTCAGGAGGAAGTTCCCGCAGCTCACATGCCTGCAGCCATGGCTGCTGCCTGGGCATCCTaGATTGAGCAGTGCTCGGCC +
Preference number: 4 (lower is better)
Translates to: PWVVQEEVPAAHMPAAMAAAWAS*IEQCSA
Trigger: GGCCGAGCACTGCTCAATCCAGGATGCCCAGGCAGC...AGCCATGGCTGCAGGCATGTGAGCTGCGGGAACTTCCTCCTGAACTACCCAGGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064244.11
ENSMUST00000114020.10
CDS-3UTR CCA 90 bp TCACTGGTCACTCTGCAATTGCTGCTACCCAGAACAGCTGCTGGCAGGACAGTGTGCGGTGCTGTGGAGTaGCAGCTGGGGCACGCCGGT +
Preference number: 4 (lower is better)
Translates to: SLVTLQLLLPRTAAGRTVCGAVE*QLGHAG
Trigger: ACCGGCGTGCCCCAGCTGCCACTCCACAGCACCGCA...CACTGTCCTGCCAGCAGCTGTTCTGGGTAGCAGCAATTGCAGAGTGACCAGTGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064244.11
ENSMUST00000114020.10
CDS-3UTR CCA 90 bp CCCTGGGTAGTTCAGGAGGAAGTTCCCGCAGCTCACATGCCTGCAGCCATGGCTTCTTCCGTACCAGCATaGCTGCCTCTGGGCCTATGG +
Preference number: 4 (lower is better)
Translates to: PWVVQEEVPAAHMPAAMASSVPA*LPLGLW
Trigger: CCATAGGCCCAGAGGCAGCCATGCTGGTACGGAAGA...AGCCATGGCTGCAGGCATGTGAGCTGCGGGAACTTCCTCCTGAACTACCCAGGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064244.11
ENSMUST00000114020.10
CDS-3UTR CCA 90 bp GTTCAGGAGGAAGTTCCCGCAGCTCACATGCCTGCAGCCATGGCTCTGAGAAAGCTTGATGCGGTGCTGTaGAGTGGCAGCTGGGGCACG +
Preference number: 4 (lower is better)
Translates to: VQEEVPAAHMPAAMALRKLDAVL*SGSWGT
Trigger: CGTGCCCCAGCTGCCACTCCACAGCACCGCATCAAG...CTTTCTCAGAGCCATGGCTGCAGGCATGTGAGCTGCGGGAACTTCCTCCTGAAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064244.11
ENSMUST00000114020.10
CDS-3UTR CCA 90 bp GGTCACTCTGCAATTGCTGCTACCCAGAACAGCTGCTGGCAGGACAGTGGGAAGCTTGATGCGGTGCTGTaGAGTGGCAGCTGGGGCACG +
Preference number: 4 (lower is better)
Translates to: GHSAIAATQNSCWQDSGKLDAVL*SGSWGT
Trigger: CGTGCCCCAGCTGCCACTCCACAGCACCGCATCAAG...CTTCCCACTGTCCTGCCAGCAGCTGTTCTGGGTAGCAGCAATTGCAGAGTGACC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064244.11
ENSMUST00000114020.10
CDS-3UTR CCA 90 bp ACCTCAACACACAGGTGCTGGATGATTAGGCCCTGGGTAGTTCAGGAGGAAGTTTGCGGTGCTGTGGAGTaGCAGCTGGGGCACGCCGGT +
Preference number: 4 (lower is better)
Translates to: TSTHRCWMIRPWVVQEEVCGAVE*QLGHAG
Trigger: ACCGGCGTGCCCCAGCTGCCACTCCACAGCACCGCA...AACTTCCTCCTGAACTACCCAGGGCCTAATCATCCAGCACCTGTGTGTTGAGGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064244.11
ENSMUST00000114020.10
CDS-3UTR GCA 90 bp CCCTGGGTAGTTCAGGAGGAAGTTCCCGCAGCTCACATGCCTGCAGCCATGGCTGACGTAAAGCCTCATTaGTGCCTGGGCATCCTGGAT +
Preference number: 4 (lower is better)
Translates to: PWVVQEEVPAAHMPAAMADVKPH*CLGILD
Trigger: ATCCAGGATGCCCAGGCAGCAATGAGGCTTTACGTC...AGCCATGGCTGCAGGCATGTGAGCTGCGGGAACTTCCTCCTGAACTACCCAGGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064244.11
ENSMUST00000114020.10
CDS-3UTR GCA 90 bp CCCTGGGTAGTTCAGGAGGAAGTTCCCGCAGCTCACATGCCTGCAGCCATGGCTGCCGGTTTGCAGTACTaGTCTCCCATTCCCGTTTCA +
Preference number: 4 (lower is better)
Translates to: PWVVQEEVPAAHMPAAMAAGLQY*SPIPVS
Trigger: TGAAACGGGAATGGGAGAGCAGTACTGCAAACCGGC...AGCCATGGCTGCAGGCATGTGAGCTGCGGGAACTTCCTCCTGAACTACCCAGGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064244.11
ENSMUST00000114020.10
CDS-3UTR CCA 90 bp CCTCGAACCTACACCCCTGACTTCTGCCCTGTATCTGACCAGTCTACCTCAACAGCTGCCTGGGCATCCTaGATTGAGCAGTGCTCGGCC +
Preference number: 4 (lower is better)
Translates to: PRTYTPDFCPVSDQSTSTAAWAS*IEQCSA
Trigger: GGCCGAGCACTGCTCAATCCAGGATGCCCAGGCAGC...TGTTGAGGTAGACTGGTCAGATACAGGGCAGAAGTCAGGGGTGTAGGTTCGAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064244.11
ENSMUST00000114020.10
CDS-3UTR CCA 90 bp GGCCAAGCAAAGGACAAAGGAGTGGGAAAGGACCTCCAGCCCAGTAGCTTTAAGCTGTGGAGTGGCAGCTaGGGCACGCCGGTTTGCAGT +
Preference number: 4 (lower is better)
Translates to: GQAKDKGVGKDLQPSSFKLWSGS*GTPVCS
Trigger: ACTGCAAACCGGCGTGCCCCAGCTGCCACTCCACAG...CTTAAAGCTACTGGGCTGGAGGTCCTTTCCCACTCCTTTGTCCTTTGCTTGGCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064244.11
ENSMUST00000114020.10
CDS-3UTR TCA 90 bp GGTCACTCTGCAATTGCTGCTACCCAGAACAGCTGCTGGCAGGACAGTGGGAAGTCAGTGGGCGTGGGCTaGTTCAAGATAACAGCTGCC +
Preference number: 4 (lower is better)
Translates to: GHSAIAATQNSCWQDSGKSVGVG*FKITAA
Trigger: GGCAGCTGTTATCTTGAATCAGCCCACGCCCACTGA...CTTCCCACTGTCCTGCCAGCAGCTGTTCTGGGTAGCAGCAATTGCAGAGTGACC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064244.11
ENSMUST00000114020.10
CDS-3UTR TCA 90 bp CCTCGAACCTACACCCCTGACTTCTGCCCTGTATCTGACCAGTCTACCTCAACACTGGGCATCCTGGATTaGGCAGTGCTCGGCCTGTTG +
Preference number: 4 (lower is better)
Translates to: PRTYTPDFCPVSDQSTSTLGILD*AVLGLL
Trigger: CAACAGGCCGAGCACTGCTCAATCCAGGATGCCCAG...TGTTGAGGTAGACTGGTCAGATACAGGGCAGAAGTCAGGGGTGTAGGTTCGAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064244.11
ENSMUST00000114020.10
CDS-3UTR GCA 90 bp GTTCTCCTTCCTCGAACCTACACCCCTGACTTCTGCCCTGTATCTGACCAGTCTCCGTACCAGCATGGCTaGCTCTGGGCCTATGGCATC +
Preference number: 4 (lower is better)
Translates to: VLLPRTYTPDFCPVSDQSPYQHG*LWAYGI
Trigger: GATGCCATAGGCCCAGAGGCAGCCATGCTGGTACGG...AGACTGGTCAGATACAGGGCAGAAGTCAGGGGTGTAGGTTCGAGGAAGGAGAAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064244.11
ENSMUST00000114020.10
CDS-3UTR CCA 90 bp CCCTGGGTAGTTCAGGAGGAAGTTCCCGCAGCTCACATGCCTGCAGCCATGGCTAGATGTCTTCCTCAGTaGGCGTGGGCTGATTCAAGA +
Preference number: 4 (lower is better)
Translates to: PWVVQEEVPAAHMPAAMARCLPQ*AWADSR
Trigger: TCTTGAATCAGCCCACGCCCACTGAGGAAGACATCT...AGCCATGGCTGCAGGCATGTGAGCTGCGGGAACTTCCTCCTGAACTACCCAGGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064244.11
ENSMUST00000114020.10
CDS-3UTR CCA 90 bp GGTCACTCTGCAATTGCTGCTACCCAGAACAGCTGCTGGCAGGACAGTGGGAAGCAGCATGGCTGCCTCTaGGCCTATGGCATCCTCAAT +
Preference number: 4 (lower is better)
Translates to: GHSAIAATQNSCWQDSGKQHGCL*AYGILN
Trigger: ATTGAGGATGCCATAGGCCCAGAGGCAGCCATGCTG...CTTCCCACTGTCCTGCCAGCAGCTGTTCTGGGTAGCAGCAATTGCAGAGTGACC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064244.11
ENSMUST00000114020.10
CDS-3UTR CCA 90 bp GGTCACTCTGCAATTGCTGCTACCCAGAACAGCTGCTGGCAGGACAGTGGGAAGCCTTCTCCAGGGAGATaGTCCTCTTCTTCTGCCCCA +
Preference number: 4 (lower is better)
Translates to: GHSAIAATQNSCWQDSGKPSPGR*SSSSAP
Trigger: TGGGGCAGAAGAAGAGGACCATCTCCCTGGAGAAGG...CTTCCCACTGTCCTGCCAGCAGCTGTTCTGGGTAGCAGCAATTGCAGAGTGACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064244.11
ENSMUST00000114020.10
CDS-3UTR TCA 90 bp CCCTGGGTAGTTCAGGAGGAAGTTCCCGCAGCTCACATGCCTGCAGCCATGGCTCTGGCTCAGTTGGCTTaGCGTACTTGTCATAAACAC +
Preference number: 4 (lower is better)
Translates to: PWVVQEEVPAAHMPAAMALAQLA*RTCHKH
Trigger: GTGTTTATGACAAGTACGTCAAGCCAACTGAGCCAG...AGCCATGGCTGCAGGCATGTGAGCTGCGGGAACTTCCTCCTGAACTACCCAGGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064244.11
ENSMUST00000114020.10
CDS-3UTR TCA 90 bp GAACCTACACCCCTGACTTCTGCCCTGTATCTGACCAGTCTACCTCAACACACACTGGGCATCCTGGATTaGGCAGTGCTCGGCCTGTTG +
Preference number: 4 (lower is better)
Translates to: EPTPLTSALYLTSLPQHTLGILD*AVLGLL
Trigger: CAACAGGCCGAGCACTGCTCAATCCAGGATGCCCAG...TGTGTGTTGAGGTAGACTGGTCAGATACAGGGCAGAAGTCAGGGGTGTAGGTTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064244.11
ENSMUST00000114020.10
CDS-3UTR GCA 90 bp GTTCAGGAGGAAGTTCCCGCAGCTCACATGCCTGCAGCCATGGCTCTGAGAAAGGACGTAAAGCCTCATTaGTGCCTGGGCATCCTGGAT +
Preference number: 4 (lower is better)
Translates to: VQEEVPAAHMPAAMALRKDVKPH*CLGILD
Trigger: ATCCAGGATGCCCAGGCAGCAATGAGGCTTTACGTC...CTTTCTCAGAGCCATGGCTGCAGGCATGTGAGCTGCGGGAACTTCCTCCTGAAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064244.11
ENSMUST00000114020.10
CDS-3UTR GCA 90 bp GTTCTCCTTCCTCGAACCTACACCCCTGACTTCTGCCCTGTATCTGACCAGTCTTGGGGCACGCCGGTTTaGAGTACTGCTCTCCCATTC +
Preference number: 4 (lower is better)
Translates to: VLLPRTYTPDFCPVSDQSWGTPV*STALPF
Trigger: GAATGGGAGAGCAGTACTGCAAACCGGCGTGCCCCA...AGACTGGTCAGATACAGGGCAGAAGTCAGGGGTGTAGGTTCGAGGAAGGAGAAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000064244.11
ENSMUST00000114020.10
CDS-3UTR CCA 90 bp TCACTGGTCACTCTGCAATTGCTGCTACCCAGAACAGCTGCTGGCAGGACAGTGTGCTCTCTTCCCCTTTaGGACCCACGCCTACCATCT +
Preference number: 4 (lower is better)
Translates to: SLVTLQLLLPRTAAGRTVCSLPL*DPRLPS
Trigger: AGATGGTAGGCGTGGGTCCCAAAGGGGAAGAGAGCA...CACTGTCCTGCCAGCAGCTGTTCTGGGTAGCAGCAATTGCAGAGTGACCAGTGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064244.11
ENSMUST00000114020.10
CDS-3UTR GCA 90 bp GAACCTACACCCCTGACTTCTGCCCTGTATCTGACCAGTCTACCTCAACACACATGGGGCACGCCGGTTTaGAGTACTGCTCTCCCATTC +
Preference number: 4 (lower is better)
Translates to: EPTPLTSALYLTSLPQHTWGTPV*STALPF
Trigger: GAATGGGAGAGCAGTACTGCAAACCGGCGTGCCCCA...TGTGTGTTGAGGTAGACTGGTCAGATACAGGGCAGAAGTCAGGGGTGTAGGTTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000064244.11
ENSMUST00000114020.10
CDS-3UTR CCA 90 bp GTTCTCCTTCCTCGAACCTACACCCCTGACTTCTGCCCTGTATCTGACCAGTCTCAGCATGGCTGCCTCTaGGCCTATGGCATCCTCAAT +
Preference number: 4 (lower is better)
Translates to: VLLPRTYTPDFCPVSDQSQHGCL*AYGILN
Trigger: ATTGAGGATGCCATAGGCCCAGAGGCAGCCATGCTG...AGACTGGTCAGATACAGGGCAGAAGTCAGGGGTGTAGGTTCGAGGAAGGAGAAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064244.11
ENSMUST00000114020.10
CDS-3UTR CCA 90 bp GGCCAAGCAAAGGACAAAGGAGTGGGAAAGGACCTCCAGCCCAGTAGCTTTAAGCCTTCTCCAGGGAGATaGTCCTCTTCTTCTGCCCCA +
Preference number: 4 (lower is better)
Translates to: GQAKDKGVGKDLQPSSFKPSPGR*SSSSAP
Trigger: TGGGGCAGAAGAAGAGGACCATCTCCCTGGAGAAGG...CTTAAAGCTACTGGGCTGGAGGTCCTTTCCCACTCCTTTGTCCTTTGCTTGGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064244.11
ENSMUST00000114020.10
CDS-3UTR CCA 90 bp GTTCTCCTTCCTCGAACCTACACCCCTGACTTCTGCCCTGTATCTGACCAGTCTTGCTCTCTTCCCCTTTaGGACCCACGCCTACCATCT +
Preference number: 4 (lower is better)
Translates to: VLLPRTYTPDFCPVSDQSCSLPL*DPRLPS
Trigger: AGATGGTAGGCGTGGGTCCCAAAGGGGAAGAGAGCA...AGACTGGTCAGATACAGGGCAGAAGTCAGGGGTGTAGGTTCGAGGAAGGAGAAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000064244.11
ENSMUST00000114020.10
CDS-3UTR CCA 90 bp GGCCAAGCAAAGGACAAAGGAGTGGGAAAGGACCTCCAGCCCAGTAGCTTTAAGAGCCTCATTGCTGCCTaGGCATCCTGGATTGAGCAG +
Preference number: 4 (lower is better)
Translates to: GQAKDKGVGKDLQPSSFKSLIAA*ASWIEQ
Trigger: CTGCTCAATCCAGGATGCCCAGGCAGCAATGAGGCT...CTTAAAGCTACTGGGCTGGAGGTCCTTTCCCACTCCTTTGTCCTTTGCTTGGCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064244.11
ENSMUST00000114020.10
3UTR CAA 72 bp GTTTGCAGCAGACTGAACGCCCTTAGCCTGGATCCCTaGGATCCAGCAGAGCTTATCCCCTTACCTGACAGA +
Preference number: 4 (lower is better)
Translates to: VCSRLNALSLDP*DPAELIPLPDR
Trigger: TCTGTCAGGTAAGGGGATAAGCTCTGCTGGATCCAAGGGATCCAGGCTAAGGGCGTTCAGTCTGCTGCAAAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064244.11
ENSMUST00000114020.10
CDS-3UTR GCA 90 bp GTTCTCCTTCCTCGAACCTACACCCCTGACTTCTGCCCTGTATCTGACCAGTCTGCCGGTTTGCAGTACTaGTCTCCCATTCCCGTTTCA +
Preference number: 4 (lower is better)
Translates to: VLLPRTYTPDFCPVSDQSAGLQY*SPIPVS
Trigger: TGAAACGGGAATGGGAGAGCAGTACTGCAAACCGGC...AGACTGGTCAGATACAGGGCAGAAGTCAGGGGTGTAGGTTCGAGGAAGGAGAAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064244.11
ENSMUST00000114020.10
CDS-3UTR CCA 90 bp CCCTGGGTAGTTCAGGAGGAAGTTCCCGCAGCTCACATGCCTGCAGCCATGGCTTTCTGCTGGATTATTTaGGGGTGCATTTTGTCATCC +
Preference number: 4 (lower is better)
Translates to: PWVVQEEVPAAHMPAAMAFCWII*GCILSS
Trigger: GGATGACAAAATGCACCCCCAAATAATCCAGCAGAA...AGCCATGGCTGCAGGCATGTGAGCTGCGGGAACTTCCTCCTGAACTACCCAGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000064244.11
ENSMUST00000114020.10
CDS-3UTR CCA 90 bp TCACTGGTCACTCTGCAATTGCTGCTACCCAGAACAGCTGCTGGCAGGACAGTGACACACTTCCCATACTaGTTCACGATCGACACACGG +
Preference number: 4 (lower is better)
Translates to: SLVTLQLLLPRTAAGRTVTHFPY*FTIDTR
Trigger: CCGTGTGTCGATCGTGAACCAGTATGGGAAGTGTGT...CACTGTCCTGCCAGCAGCTGTTCTGGGTAGCAGCAATTGCAGAGTGACCAGTGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064244.11
ENSMUST00000114020.10
CDS-3UTR CCA 90 bp GTTCTCCTTCCTCGAACCTACACCCCTGACTTCTGCCCTGTATCTGACCAGTCTACACACTTCCCATACTaGTTCACGATCGACACACGG +
Preference number: 4 (lower is better)
Translates to: VLLPRTYTPDFCPVSDQSTHFPY*FTIDTR
Trigger: CCGTGTGTCGATCGTGAACCAGTATGGGAAGTGTGT...AGACTGGTCAGATACAGGGCAGAAGTCAGGGGTGTAGGTTCGAGGAAGGAGAAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064244.11
ENSMUST00000114020.10
CDS-3UTR TCA 90 bp GTTCTCCTTCCTCGAACCTACACCCCTGACTTCTGCCCTGTATCTGACCAGTCTATTCCCGTTTCACCATaGCGTAAAGCCTCATTGCTG +
Preference number: 4 (lower is better)
Translates to: VLLPRTYTPDFCPVSDQSIPVSP*RKASLL
Trigger: CAGCAATGAGGCTTTACGTCATGGTGAAACGGGAAT...AGACTGGTCAGATACAGGGCAGAAGTCAGGGGTGTAGGTTCGAGGAAGGAGAAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064244.11
ENSMUST00000114020.10
CDS-3UTR CCA 90 bp ACCTCAACACACAGGTGCTGGATGATTAGGCCCTGGGTAGTTCAGGAGGAAGTTAGATGTCTTCCTCAGTaGGCGTGGGCTGATTCAAGA +
Preference number: 4 (lower is better)
Translates to: TSTHRCWMIRPWVVQEEVRCLPQ*AWADSR
Trigger: TCTTGAATCAGCCCACGCCCACTGAGGAAGACATCT...AACTTCCTCCTGAACTACCCAGGGCCTAATCATCCAGCACCTGTGTGTTGAGGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064244.11
ENSMUST00000114020.10
CDS-3UTR CCA 90 bp GACATAGACTCTGCAGCACTCTCCTCCATTCCAATGATGTTCTCCTTCCTCGAAAGCCTCATTGCTGCCTaGGCATCCTGGATTGAGCAG +
Preference number: 4 (lower is better)
Translates to: DIDSAALSSIPMMFSFLESLIAA*ASWIEQ
Trigger: CTGCTCAATCCAGGATGCCCAGGCAGCAATGAGGCT...TTCGAGGAAGGAGAACATCATTGGAATGGAGGAGAGTGCTGCAGAGTCTATGTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064244.11
ENSMUST00000114020.10
CDS-3UTR TCA 90 bp GTTCTCCTTCCTCGAACCTACACCCCTGACTTCTGCCCTGTATCTGACCAGTCTGAGCTTTGCTCTTCCTaGACTTCTTCTTGGCTTTCT +
Preference number: 4 (lower is better)
Translates to: VLLPRTYTPDFCPVSDQSELCSS*TSSWLS
Trigger: AGAAAGCCAAGAAGAAGTTCAGGAAGAGCAAAGCTC...AGACTGGTCAGATACAGGGCAGAAGTCAGGGGTGTAGGTTCGAGGAAGGAGAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064244.11
ENSMUST00000114020.10
CDS-3UTR TCA 90 bp GAACCTACACCCCTGACTTCTGCCCTGTATCTGACCAGTCTACCTCAACACACAATTCCCGTTTCACCATaGCGTAAAGCCTCATTGCTG +
Preference number: 4 (lower is better)
Translates to: EPTPLTSALYLTSLPQHTIPVSP*RKASLL
Trigger: CAGCAATGAGGCTTTACGTCATGGTGAAACGGGAAT...TGTGTGTTGAGGTAGACTGGTCAGATACAGGGCAGAAGTCAGGGGTGTAGGTTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064244.11
ENSMUST00000114020.10
CDS-3UTR GCA 90 bp TCACTGGTCACTCTGCAATTGCTGCTACCCAGAACAGCTGCTGGCAGGACAGTGGCCTTTTCTGTCCTCTaGTTGTCTCCCTTTGATTTA +
Preference number: 4 (lower is better)
Translates to: SLVTLQLLLPRTAAGRTVAFSVL*LSPFDL
Trigger: TAAATCAAAGGGAGACAAGCAGAGGACAGAAAAGGC...CACTGTCCTGCCAGCAGCTGTTCTGGGTAGCAGCAATTGCAGAGTGACCAGTGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064244.11
ENSMUST00000114020.10
CDS-3UTR GCA 90 bp GGCCAAGCAAAGGACAAAGGAGTGGGAAAGGACCTCCAGCCCAGTAGCTTTAAGTTGGCTCCTTTCTTCTaGTCTGTTCCAGAGGTATCT +
Preference number: 4 (lower is better)
Translates to: GQAKDKGVGKDLQPSSFKLAPFF*SVPEVS
Trigger: AGATACCTCTGGAACAGAGCAGAAGAAAGGAGCCAA...CTTAAAGCTACTGGGCTGGAGGTCCTTTCCCACTCCTTTGTCCTTTGCTTGGCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064244.11
ENSMUST00000114020.10
CDS-3UTR CCA 90 bp CCTCGAACCTACACCCCTGACTTCTGCCCTGTATCTGACCAGTCTACCTCAACATTCTGCTGGATTATTTaGGGGTGCATTTTGTCATCC +
Preference number: 4 (lower is better)
Translates to: PRTYTPDFCPVSDQSTSTFCWII*GCILSS
Trigger: GGATGACAAAATGCACCCCCAAATAATCCAGCAGAA...TGTTGAGGTAGACTGGTCAGATACAGGGCAGAAGTCAGGGGTGTAGGTTCGAGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000064244.11
ENSMUST00000114020.10
CDS-3UTR CCA 90 bp GGTCACTCTGCAATTGCTGCTACCCAGAACAGCTGCTGGCAGGACAGTGGGAAGATCCTCAATATCATCTaGATCCACATCATCAAACCA +
Preference number: 4 (lower is better)
Translates to: GHSAIAATQNSCWQDSGKILNII*IHIIKP
Trigger: TGGTTTGATGATGTGGATCCAGATGATATTGAGGAT...CTTCCCACTGTCCTGCCAGCAGCTGTTCTGGGTAGCAGCAATTGCAGAGTGACC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064244.11
ENSMUST00000114020.10
CDS-3UTR CCA 90 bp GAACCTACACCCCTGACTTCTGCCCTGTATCTGACCAGTCTACCTCAACACACAAGTCACTGGCTCAGTTaGCTTGACGTACTTGTCATA +
Preference number: 4 (lower is better)
Translates to: EPTPLTSALYLTSLPQHTSHWLS*LDVLVI
Trigger: TATGACAAGTACGTCAAGCCAACTGAGCCAGTGACT...TGTGTGTTGAGGTAGACTGGTCAGATACAGGGCAGAAGTCAGGGGTGTAGGTTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064244.11
ENSMUST00000114020.10
CDS-3UTR CCA 90 bp CCTCGAACCTACACCCCTGACTTCTGCCCTGTATCTGACCAGTCTACCTCAACATACTCGACTCCTGAATaGTTTGAATTTCTGAGTGTC +
Preference number: 4 (lower is better)
Translates to: PRTYTPDFCPVSDQSTSTYSTPE*FEFLSV
Trigger: GACACTCAGAAATTCAAACCATTCAGGAGTCGAGTA...TGTTGAGGTAGACTGGTCAGATACAGGGCAGAAGTCAGGGGTGTAGGTTCGAGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064244.11
ENSMUST00000114020.10
CDS-3UTR GCA 90 bp ATCCATCCATTTATTTTTGACAGTTCTAGGAAAGGATACCAGGGTCTTACACTTCCGTACCAGCATGGCTaGCTCTGGGCCTATGGCATC +
Preference number: 4 (lower is better)
Translates to: IHPFIFDSSRKGYQGLTLPYQHG*LWAYGI
Trigger: GATGCCATAGGCCCAGAGGCAGCCATGCTGGTACGG...AAGTGTAAGACCCTGGTATCCTTTCCTAGAACTGTCAAAAATAAATGGATGGAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000064244.11
ENSMUST00000114020.10
CDS-3UTR CCA 90 bp GACATAGACTCTGCAGCACTCTCCTCCATTCCAATGATGTTCTCCTTCCTCGAAAGTCACTGGCTCAGTTaGCTTGACGTACTTGTCATA +
Preference number: 4 (lower is better)
Translates to: DIDSAALSSIPMMFSFLESHWLS*LDVLVI
Trigger: TATGACAAGTACGTCAAGCCAACTGAGCCAGTGACT...TTCGAGGAAGGAGAACATCATTGGAATGGAGGAGAGTGCTGCAGAGTCTATGTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064244.11
ENSMUST00000114020.10
CDS-3UTR CCA 90 bp ATCCATCCATTTATTTTTGACAGTTCTAGGAAAGGATACCAGGGTCTTACACTTTCTTCCGTACCAGCATaGCTGCCTCTGGGCCTATGG +
Preference number: 4 (lower is better)
Translates to: IHPFIFDSSRKGYQGLTLSSVPA*LPLGLW
Trigger: CCATAGGCCCAGAGGCAGCCATGCTGGTACGGAAGA...AAGTGTAAGACCCTGGTATCCTTTCCTAGAACTGTCAAAAATAAATGGATGGAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000064244.11
ENSMUST00000114020.10
CDS-3UTR TCA 90 bp ATCCATCCATTTATTTTTGACAGTTCTAGGAAAGGATACCAGGGTCTTACACTTCTGGCTCAGTTGGCTTaGCGTACTTGTCATAAACAC +
Preference number: 4 (lower is better)
Translates to: IHPFIFDSSRKGYQGLTLLAQLA*RTCHKH
Trigger: GTGTTTATGACAAGTACGTCAAGCCAACTGAGCCAG...AAGTGTAAGACCCTGGTATCCTTTCCTAGAACTGTCAAAAATAAATGGATGGAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000064244.11
ENSMUST00000114020.10
CDS-3UTR TCA 90 bp ATCCATCCATTTATTTTTGACAGTTCTAGGAAAGGATACCAGGGTCTTACACTTGAGCTTTGCTCTTCCTaGACTTCTTCTTGGCTTTCT +
Preference number: 4 (lower is better)
Translates to: IHPFIFDSSRKGYQGLTLELCSS*TSSWLS
Trigger: AGAAAGCCAAGAAGAAGTTCAGGAAGAGCAAAGCTC...AAGTGTAAGACCCTGGTATCCTTTCCTAGAACTGTCAAAAATAAATGGATGGAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000064244.11
ENSMUST00000114020.10
CDS-3UTR GCA 90 bp ATCCATCCATTTATTTTTGACAGTTCTAGGAAAGGATACCAGGGTCTTACACTTGCCTTTTCTGTCCTCTaGTTGTCTCCCTTTGATTTA +
Preference number: 4 (lower is better)
Translates to: IHPFIFDSSRKGYQGLTLAFSVL*LSPFDL
Trigger: TAAATCAAAGGGAGACAAGCAGAGGACAGAAAAGGC...AAGTGTAAGACCCTGGTATCCTTTCCTAGAACTGTCAAAAATAAATGGATGGAT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000064244.11
ENSMUST00000114020.10
CDS-3UTR CAA 90 bp GGTCACTCTGCAATTGCTGCTACCCAGAACAGCTGCTGGCAGGACAGTGGGAAGCCTGATAGGCCCAGGTaGGGGCACCGGCGCGGTGGC +
Preference number: 5 (lower is better)
Translates to: GHSAIAATQNSCWQDSGKPDRPR*GHRRGG
Trigger: GCCACCGCGCCGGTGCCCCAACCTGGGCCTATCAGG...CTTCCCACTGTCCTGCCAGCAGCTGTTCTGGGTAGCAGCAATTGCAGAGTGACC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064244.11
ENSMUST00000114020.10
CDS-3UTR CAA 90 bp GTTCTCCTTCCTCGAACCTACACCCCTGACTTCTGCCCTGTATCTGACCAGTCTCCTGATAGGCCCAGGTaGGGGCACCGGCGCGGTGGC +
Preference number: 5 (lower is better)
Translates to: VLLPRTYTPDFCPVSDQSPDRPR*GHRRGG
Trigger: GCCACCGCGCCGGTGCCCCAACCTGGGCCTATCAGG...AGACTGGTCAGATACAGGGCAGAAGTCAGGGGTGTAGGTTCGAGGAAGGAGAAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000064244.11
ENSMUST00000114020.10
CDS GCA 90 bp TCGGCCTGCCACAGCCGCCGGGTGGCTTCCCGGAACCCCACTTCCTaGCAGAGCTTTGCTCTTCCTGAACTTCTTCTTGGCTTTCTTCCT +
Preference number: 5 (lower is better)
Translates to: SACHSRRVASRNPTS*QSFALPELLLGFLP
Trigger: AGGAAGAAAGCCAAGAAGAAGTTCAGGAAGAGCAAAGCTCTGGCAGGAAGTGGGGTTCCGGGAAGCCACCCGGCGGCTGTGGCAGGCCGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064244.11
ENSMUST00000114020.10
ENSMUST00000136710.2
CDS GCA 90 bp CCGCCAAAGGCTTGTTCCTTCTCCAGGGAGATGGTCCTCTTCTTCTaGCCCAGCCTCTTCCGTACCAGCATGGCTGCCTCTGGGCCTATG +
Preference number: 5 (lower is better)
Translates to: PPKACSFSREMVLFF*PSLFRTSMAASGPM
Trigger: CATAGGCCCAGAGGCAGCCATGCTGGTACGGAAGAGGCTGGGGCAGAAGAAGAGGACCATCTCCCTGGAGAAGGAACAAGCCTTTGGCGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064244.11
ENSMUST00000114020.10
ENSMUST00000136710.2
CDS-3UTR CAA 90 bp CCCTGGGTAGTTCAGGAGGAAGTTCCCGCAGCTCACATGCCTGCAGCCATGGCTGAACCCCTAGTGCTCTaGGCCTTTTCTGTCCTCTGC +
Preference number: 5 (lower is better)
Translates to: PWVVQEEVPAAHMPAAMAEPLVL*AFSVLC
Trigger: GCAGAGGACAGAAAAGGCCAAGAGCACTAGGGGTTC...AGCCATGGCTGCAGGCATGTGAGCTGCGGGAACTTCCTCCTGAACTACCCAGGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000064244.11
ENSMUST00000114020.10
CDS GCA 90 bp GTTCTTGATGCGGTGCTGTGGAGTGGCAGCTGGGGCACGCCGGTTTaGAGTACTGCTCTCCCATTCCCGTTTCACCATGACGTAAAGCCT +
Preference number: 5 (lower is better)
Translates to: VLDAVLWSGSWGTPV*STALPFPFHHDVKP
Trigger: AGGCTTTACGTCATGGTGAAACGGGAATGGGAGAGCAGTACTGCAAACCGGCGTGCCCCAGCTGCCACTCCACAGCACCGCATCAAGAAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064244.11
ENSMUST00000114020.10
CDS TCA 90 bp GGGCACGCCGGTTTGCAGTACTGCTCTCCCATTCCCGTTTCACCATaGCGTAAAGCCTCATTGCTGCCTGGGCATCCTGGATTGAGCAGT +
Preference number: 5 (lower is better)
Translates to: GHAGLQYCSPIPVSP*RKASLLPGHPGLSS
Trigger: ACTGCTCAATCCAGGATGCCCAGGCAGCAATGAGGCTTTACGTCATGGTGAAACGGGAATGGGAGAGCAGTACTGCAAACCGGCGTGCCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064244.11
ENSMUST00000114020.10
CDS CCA 90 bp GGGAGATGGTCCTCTTCTTCTGCCCCAGCCTCTTCCGTACCAGCATaGCTGCCTCTGGGCCTATGGCATCCTCAATATCATCTGGATCCA +
Preference number: 5 (lower is better)
Translates to: GRWSSSSAPASSVPA*LPLGLWHPQYHLDP
Trigger: TGGATCCAGATGATATTGAGGATGCCATAGGCCCAGAGGCAGCCATGCTGGTACGGAAGAGGCTGGGGCAGAAGAAGAGGACCATCTCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064244.11
ENSMUST00000114020.10
ENSMUST00000136710.2
CDS CCA 90 bp AGGCTTTTGTCAAGCCGCCAAAGGCTTGTTCCTTCTCCAGGGAGATaGTCCTCTTCTTCTGCCCCAGCCTCTTCCGTACCAGCATGGCTG +
Preference number: 5 (lower is better)
Translates to: RLLSSRQRLVPSPGR*SSSSAPASSVPAWL
Trigger: CAGCCATGCTGGTACGGAAGAGGCTGGGGCAGAAGAAGAGGACCATCTCCCTGGAGAAGGAACAAGCCTTTGGCGGCTTGACAAAAGCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000064244.11
ENSMUST00000114020.10
ENSMUST00000136710.2
CDS-3UTR CAA 90 bp GGTCACTCTGCAATTGCTGCTACCCAGAACAGCTGCTGGCAGGACAGTGGGAAGCAAGCCGCCAAAGGCTaGTTCCTTCTCCAGGGAGAT +
Preference number: 5 (lower is better)
Translates to: GHSAIAATQNSCWQDSGKQAAKG*FLLQGD
Trigger: ATCTCCCTGGAGAAGGAACAAGCCTTTGGCGGCTTG...CTTCCCACTGTCCTGCCAGCAGCTGTTCTGGGTAGCAGCAATTGCAGAGTGACC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064244.11
ENSMUST00000114020.10
CDS GCA 90 bp GATGGTCCTCTTCTTCTGCCCCAGCCTCTTCCGTACCAGCATGGCTaGCTCTGGGCCTATGGCATCCTCAATATCATCTGGATCCACATC +
Preference number: 5 (lower is better)
Translates to: DGPLLLPQPLPYQHG*LWAYGILNIIWIHI
Trigger: GATGTGGATCCAGATGATATTGAGGATGCCATAGGCCCAGAGGCAGCCATGCTGGTACGGAAGAGGCTGGGGCAGAAGAAGAGGACCATC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064244.11
ENSMUST00000114020.10
ENSMUST00000136710.2
CDS-3UTR CAA 90 bp GTTCTCCTTCCTCGAACCTACACCCCTGACTTCTGCCCTGTATCTGACCAGTCTATGCTCTCTTCCCCTTaGGGACCCACGCCTACCATC +
Preference number: 5 (lower is better)
Translates to: VLLPRTYTPDFCPVSDQSMLSSP*GPTPTI
Trigger: GATGGTAGGCGTGGGTCCCAAAGGGGAAGAGAGCAT...AGACTGGTCAGATACAGGGCAGAAGTCAGGGGTGTAGGTTCGAGGAAGGAGAAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000064244.11
ENSMUST00000114020.10
CDS CCA 90 bp CTCATTGCTGCCTGGGCATCCTGGATTGAGCAGTGCTCGGCCTGTTaGACCCTGATCCCCAGAATTTTCTCAGAAAGCCGTTTCAGAGAC +
Preference number: 5 (lower is better)
Translates to: LIAAWASWIEQCSAC*TLIPRIFSESRFRD
Trigger: GTCTCTGAAACGGCTTTCTGAGAAAATTCTGGGGATCAGGGTCCAACAGGCCGAGCACTGCTCAATCCAGGATGCCCAGGCAGCAATGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000064244.11
ENSMUST00000114020.10
ENSMUST00000136710.2
CDS-3UTR CAA 90 bp CCCTGGGTAGTTCAGGAGGAAGTTCCCGCAGCTCACATGCCTGCAGCCATGGCTGTTCTGCTGGATTATTaGGGGGTGCATTTTGTCATC +
Preference number: 5 (lower is better)
Translates to: PWVVQEEVPAAHMPAAMAVLLDY*GVHFVI
Trigger: GATGACAAAATGCACCCCCAAATAATCCAGCAGAAC...AGCCATGGCTGCAGGCATGTGAGCTGCGGGAACTTCCTCCTGAACTACCCAGGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000064244.11
ENSMUST00000114020.10
CDS-3UTR CAA 90 bp GTTCTCCTTCCTCGAACCTACACCCCTGACTTCTGCCCTGTATCTGACCAGTCTGAACCCCTAGTGCTCTaGGCCTTTTCTGTCCTCTGC +
Preference number: 5 (lower is better)
Translates to: VLLPRTYTPDFCPVSDQSEPLVL*AFSVLC
Trigger: GCAGAGGACAGAAAAGGCCAAGAGCACTAGGGGTTC...AGACTGGTCAGATACAGGGCAGAAGTCAGGGGTGTAGGTTCGAGGAAGGAGAAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000064244.11
ENSMUST00000114020.10
CDS-3UTR CAA 90 bp CCTCGAACCTACACCCCTGACTTCTGCCCTGTATCTGACCAGTCTACCTCAACACAAGCCGCCAAAGGCTaGTTCCTTCTCCAGGGAGAT +
Preference number: 5 (lower is better)
Translates to: PRTYTPDFCPVSDQSTSTQAAKG*FLLQGD
Trigger: ATCTCCCTGGAGAAGGAACAAGCCTTTGGCGGCTTG...TGTTGAGGTAGACTGGTCAGATACAGGGCAGAAGTCAGGGGTGTAGGTTCGAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064244.11
ENSMUST00000114020.10
CDS-3UTR CAA 90 bp ACCTCAACACACAGGTGCTGGATGATTAGGCCCTGGGTAGTTCAGGAGGAAGTTATGCTCTCTTCCCCTTaGGGACCCACGCCTACCATC +
Preference number: 5 (lower is better)
Translates to: TSTHRCWMIRPWVVQEEVMLSSP*GPTPTI
Trigger: GATGGTAGGCGTGGGTCCCAAAGGGGAAGAGAGCAT...AACTTCCTCCTGAACTACCCAGGGCCTAATCATCCAGCACCTGTGTGTTGAGGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064244.11
ENSMUST00000114020.10
CDS TCA 90 bp TTTCACCATGACGTAAAGCCTCATTGCTGCCTGGGCATCCTGGATTaGGCAGTGCTCGGCCTGTTGGACCCTGATCCCCAGAATTTTCTC +
Preference number: 5 (lower is better)
Translates to: FHHDVKPHCCLGILD*AVLGLLDPDPQNFL
Trigger: GAGAAAATTCTGGGGATCAGGGTCCAACAGGCCGAGCACTGCTCAATCCAGGATGCCCAGGCAGCAATGAGGCTTTACGTCATGGTGAAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000064244.11
ENSMUST00000114020.10
ENSMUST00000136710.2
CDS CCA 90 bp TCTGCCCCAGCCTCTTCCGTACCAGCATGGCTGCCTCTGGGCCTATaGCATCCTCAATATCATCTGGATCCACATCATCAAACCAGATGT +
Preference number: 5 (lower is better)
Translates to: SAPASSVPAWLPLGL*HPQYHLDPHHQTRC
Trigger: ACATCTGGTTTGATGATGTGGATCCAGATGATATTGAGGATGCCATAGGCCCAGAGGCAGCCATGCTGGTACGGAAGAGGCTGGGGCAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064244.11
ENSMUST00000114020.10
ENSMUST00000136710.2
CDS CCA 90 bp CCTCTTCTTCTGCCCCAGCCTCTTCCGTACCAGCATGGCTGCCTCTaGGCCTATGGCATCCTCAATATCATCTGGATCCACATCATCAAA +
Preference number: 5 (lower is better)
Translates to: PLLLPQPLPYQHGCL*AYGILNIIWIHIIK
Trigger: TTTGATGATGTGGATCCAGATGATATTGAGGATGCCATAGGCCCAGAGGCAGCCATGCTGGTACGGAAGAGGCTGGGGCAGAAGAAGAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064244.11
ENSMUST00000114020.10
ENSMUST00000136710.2
CDS-3UTR CAA 90 bp TCACTGGTCACTCTGCAATTGCTGCTACCCAGAACAGCTGCTGGCAGGACAGTGTTCCTGAACTTCTTCTaGGCTTTCTTCCTAGCGAGC +
Preference number: 5 (lower is better)
Translates to: SLVTLQLLLPRTAAGRTVFLNFF*AFFLAS
Trigger: GCTCGCTAGGAAGAAAGCCAAGAAGAAGTTCAGGAA...CACTGTCCTGCCAGCAGCTGTTCTGGGTAGCAGCAATTGCAGAGTGACCAGTGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064244.11
ENSMUST00000114020.10
CDS-3UTR CAA 90 bp GTTCTCCTTCCTCGAACCTACACCCCTGACTTCTGCCCTGTATCTGACCAGTCTCAACGCCTTCCAATTTaGAGAAAAGTTCTCGGGGGC +
Preference number: 5 (lower is better)
Translates to: VLLPRTYTPDFCPVSDQSQRLPI*RKVLGG
Trigger: GCCCCCGAGAACTTTTCTCAAAATTGGAAGGCGTTG...AGACTGGTCAGATACAGGGCAGAAGTCAGGGGTGTAGGTTCGAGGAAGGAGAAC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000064244.11
ENSMUST00000114020.10
CDS-3UTR CAA 90 bp GGCCAAGCAAAGGACAAAGGAGTGGGAAAGGACCTCCAGCCCAGTAGCTTTAAGTTCCTGAACTTCTTCTaGGCTTTCTTCCTAGCGAGC +
Preference number: 5 (lower is better)
Translates to: GQAKDKGVGKDLQPSSFKFLNFF*AFFLAS
Trigger: GCTCGCTAGGAAGAAAGCCAAGAAGAAGTTCAGGAA...CTTAAAGCTACTGGGCTGGAGGTCCTTTCCCACTCCTTTGTCCTTTGCTTGGCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064244.11
ENSMUST00000114020.10
CDS-3UTR CAA 90 bp GAACCTACACCCCTGACTTCTGCCCTGTATCTGACCAGTCTACCTCAACACACACTTCCTGCCAGAGCTTaGCTCTTCCTGAACTTCTTC +
Preference number: 5 (lower is better)
Translates to: EPTPLTSALYLTSLPQHTLPARA*LFLNFF
Trigger: GAAGAAGTTCAGGAAGAGCAAAGCTCTGGCAGGAAG...TGTGTGTTGAGGTAGACTGGTCAGATACAGGGCAGAAGTCAGGGGTGTAGGTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064244.11
ENSMUST00000114020.10
CDS-3UTR CAA 90 bp GAACCTACACCCCTGACTTCTGCCCTGTATCTGACCAGTCTACCTCAACACACACAACGCCTTCCAATTTaGAGAAAAGTTCTCGGGGGC +
Preference number: 5 (lower is better)
Translates to: EPTPLTSALYLTSLPQHTQRLPI*RKVLGG
Trigger: GCCCCCGAGAACTTTTCTCAAAATTGGAAGGCGTTG...TGTGTGTTGAGGTAGACTGGTCAGATACAGGGCAGAAGTCAGGGGTGTAGGTTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000064244.11
ENSMUST00000114020.10
CDS-3UTR CAA 90 bp GGTCACTCTGCAATTGCTGCTACCCAGAACAGCTGCTGGCAGGACAGTGGGAAGTCTGCTTGTCTCCCTTaGATTTATCTGAGGCCTTTT +
Preference number: 5 (lower is better)
Translates to: GHSAIAATQNSCWQDSGKSACLP*IYLRPF
Trigger: AAAAGGCCTCAGATAAATCAAAGGGAGACAAGCAGA...CTTCCCACTGTCCTGCCAGCAGCTGTTCTGGGTAGCAGCAATTGCAGAGTGACC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064244.11
ENSMUST00000114020.10
CDS-3UTR CAA 90 bp ACCTCAACACACAGGTGCTGGATGATTAGGCCCTGGGTAGTTCAGGAGGAAGTTAGGCTTGAGAGCCCCTaGATGAGAAGAGATGTCACT +
Preference number: 5 (lower is better)
Translates to: TSTHRCWMIRPWVVQEEVRLESP*MRRDVT
Trigger: AGTGACATCTCTTCTCATCAAGGGGCTCTCAAGCCT...AACTTCCTCCTGAACTACCCAGGGCCTAATCATCCAGCACCTGTGTGTTGAGGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064244.11
ENSMUST00000114020.10
CDS GCA 90 bp CGTTTCAGAGACGGTCGTCCACTCTTTAAATCATTGTGTAGCGCATaGCCCACCAGGATTCTGCCCTTCAACATTTCTGCCACTTCCTTC +
Preference number: 5 (lower is better)
Translates to: RFRDGRPLFKSLCSA*PTRILPFNISATSF
Trigger: GAAGGAAGTGGCAGAAATGTTGAAGGGCAGAATCCTGGTGGGGCATGCGCTACACAATGATTTAAAGAGTGGACGACCGTCTCTGAAACG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000136710.2
CDS-3UTR CAA 90 bp GTTCTCCTTCCTCGAACCTACACCCCTGACTTCTGCCCTGTATCTGACCAGTCTGTTCTGCTGGATTATTaGGGGGTGCATTTTGTCATC +
Preference number: 5 (lower is better)
Translates to: VLLPRTYTPDFCPVSDQSVLLDY*GVHFVI
Trigger: GATGACAAAATGCACCCCCAAATAATCCAGCAGAAC...AGACTGGTCAGATACAGGGCAGAAGTCAGGGGTGTAGGTTCGAGGAAGGAGAAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000064244.11
ENSMUST00000114020.10
CDS-3UTR CAA 90 bp ACCTCAACACACAGGTGCTGGATGATTAGGCCCTGGGTAGTTCAGGAGGAAGTTCTATATGTCCTCTTCTaGGCTCCTTTCTTCTGCTCT +
Preference number: 5 (lower is better)
Translates to: TSTHRCWMIRPWVVQEEVLYVLF*APFFCS
Trigger: AGAGCAGAAGAAAGGAGCCAAGAAGAGGACATATAG...AACTTCCTCCTGAACTACCCAGGGCCTAATCATCCAGCACCTGTGTGTTGAGGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064244.11
ENSMUST00000114020.10
CDS-3UTR CAA 90 bp CCTCGAACCTACACCCCTGACTTCTGCCCTGTATCTGACCAGTCTACCTCAACATTTTCTGTCCTCTGCTaGTCTCCCTTTGATTTATCT +
Preference number: 5 (lower is better)
Translates to: PRTYTPDFCPVSDQSTSTFSVLC*SPFDLS
Trigger: AGATAAATCAAAGGGAGACAAGCAGAGGACAGAAAA...TGTTGAGGTAGACTGGTCAGATACAGGGCAGAAGTCAGGGGTGTAGGTTCGAGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000064244.11
ENSMUST00000114020.10
CDS-3UTR CAA 90 bp GTTCTCCTTCCTCGAACCTACACCCCTGACTTCTGCCCTGTATCTGACCAGTCTTTTTCTGTCCTCTGCTaGTCTCCCTTTGATTTATCT +
Preference number: 5 (lower is better)
Translates to: VLLPRTYTPDFCPVSDQSFSVLC*SPFDLS
Trigger: AGATAAATCAAAGGGAGACAAGCAGAGGACAGAAAA...AGACTGGTCAGATACAGGGCAGAAGTCAGGGGTGTAGGTTCGAGGAAGGAGAAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000064244.11
ENSMUST00000114020.10
CDS GCA 90 bp TTTGGATGGTCAAGGAACAAAACCTTTAAATCATTGTGTAGCGCATaGCCCACCAGGATTCTGCCCTTCAACATTTCTGCCACTTCCTTC +
Preference number: 5 (lower is better)
Translates to: FGWSRNKTFKSLCSA*PTRILPFNISATSF
Trigger: GAAGGAAGTGGCAGAAATGTTGAAGGGCAGAATCCTGGTGGGGCATGCGCTACACAATGATTTAAAGGTTTTGTTCCTTGACCATCCAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064244.11
ENSMUST00000114020.10
CDS-3UTR CAA 90 bp ATCCATCCATTTATTTTTGACAGTTCTAGGAAAGGATACCAGGGTCTTACACTTAGGCTTGAGAGCCCCTaGATGAGAAGAGATGTCACT +
Preference number: 5 (lower is better)
Translates to: IHPFIFDSSRKGYQGLTLRLESP*MRRDVT
Trigger: AGTGACATCTCTTCTCATCAAGGGGCTCTCAAGCCT...AAGTGTAAGACCCTGGTATCCTTTCCTAGAACTGTCAAAAATAAATGGATGGAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000064244.11
ENSMUST00000114020.10
CDS-3UTR CAA 90 bp ATCCATCCATTTATTTTTGACAGTTCTAGGAAAGGATACCAGGGTCTTACACTTCTATATGTCCTCTTCTaGGCTCCTTTCTTCTGCTCT +
Preference number: 5 (lower is better)
Translates to: IHPFIFDSSRKGYQGLTLLYVLF*APFFCS
Trigger: AGAGCAGAAGAAAGGAGCCAAGAAGAGGACATATAG...AAGTGTAAGACCCTGGTATCCTTTCCTAGAACTGTCAAAAATAAATGGATGGAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000064244.11
ENSMUST00000114020.10
CDS CCA 72 bp GGGGCCTTCGGCGGTCGGCCTGCCACAGCCGCCGGGTaGCTTCCCGGAACCCCACTTCCTGCCAGAGCTTTG +
Preference number: 6 (lower is better)
Translates to: GAFGGRPATAAG*LPGTPLPARAL
Trigger: CAAAGCTCTGGCAGGAAGTGGGGTTCCGGGAAGCCACCCGGCGGCTGTGGCAGGCCGACCGCCGAAGGCCCC
72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000064244.11
ENSMUST00000114020.10
ENSMUST00000136710.2
CDS GCA 72 bp GCGGTGCTGTGGAGTGGCAGCTGGGGCACGCCGGTTTaGAGTACTGCTCTCCCATTCCCGTTTCACCATGAC +
Preference number: 6 (lower is better)
Translates to: AVLWSGSWGTPV*STALPFPFHHD
Trigger: GTCATGGTGAAACGGGAATGGGAGAGCAGTACTGCAAACCGGCGTGCCCCAGCTGCCACTCCACAGCACCGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064244.11
ENSMUST00000114020.10
CDS TCA 72 bp GACGTAAAGCCTCATTGCTGCCTGGGCATCCTGGATTaGGCAGTGCTCGGCCTGTTGGACCCTGATCCCCAG +
Preference number: 6 (lower is better)
Translates to: DVKPHCCLGILD*AVLGLLDPDPQ
Trigger: CTGGGGATCAGGGTCCAACAGGCCGAGCACTGCTCAATCCAGGATGCCCAGGCAGCAATGAGGCTTTACGTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064244.11
ENSMUST00000114020.10
ENSMUST00000136710.2
CDS CAA 90 bp ACAGCCGCCGGGTGGCTTCCCGGAACCCCACTTCCTGCCAGAGCTTaGCTCTTCCTGAACTTCTTCTTGGCTTTCTTCCTAGCGAGCTTC +
Preference number: 6 (lower is better)
Translates to: TAAGWLPGTPLPARA*LFLNFFLAFFLASF
Trigger: GAAGCTCGCTAGGAAGAAAGCCAAGAAGAAGTTCAGGAAGAGCAAAGCTCTGGCAGGAAGTGGGGTTCCGGGAAGCCACCCGGCGGCTGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064244.11
ENSMUST00000114020.10
ENSMUST00000136710.2
CDS GCA 72 bp GCTTGTTCCTTCTCCAGGGAGATGGTCCTCTTCTTCTaGCCCAGCCTCTTCCGTACCAGCATGGCTGCCTCT +
Preference number: 6 (lower is better)
Translates to: ACSFSREMVLFF*PSLFRTSMAAS
Trigger: AGAGGCAGCCATGCTGGTACGGAAGAGGCTGGGGCAGAAGAAGAGGACCATCTCCCTGGAGAAGGAACAAGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064244.11
ENSMUST00000114020.10
ENSMUST00000136710.2
CDS GCA 72 bp TCCCATACTGGTTCACGATCGACACACGGGCTGCGATaGTCTCTTCCCCTTTGGGACCCACGCCTACCATCT +
Preference number: 6 (lower is better)
Translates to: SHTGSRSTHGLR*SLPLWDPRLPS
Trigger: AGATGGTAGGCGTGGGTCCCAAAGGGGAAGAGAGCATCGCAGCCCGTGTGTCGATCGTGAACCAGTATGGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064244.11
ENSMUST00000114020.10
ENSMUST00000136710.2
CDS CCA 72 bp CTGCCCCAGCCTCTTCCGTACCAGCATGGCTGCCTCTaGGCCTATGGCATCCTCAATATCATCTGGATCCAC +
Preference number: 6 (lower is better)
Translates to: LPQPLPYQHGCL*AYGILNIIWIH
Trigger: GTGGATCCAGATGATATTGAGGATGCCATAGGCCCAGAGGCAGCCATGCTGGTACGGAAGAGGCTGGGGCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064244.11
ENSMUST00000114020.10
ENSMUST00000136710.2
CDS GCA 72 bp CTTCTTCTGCCCCAGCCTCTTCCGTACCAGCATGGCTaGCTCTGGGCCTATGGCATCCTCAATATCATCTGG +
Preference number: 6 (lower is better)
Translates to: LLLPQPLPYQHG*LWAYGILNIIW
Trigger: CCAGATGATATTGAGGATGCCATAGGCCCAGAGGCAGCCATGCTGGTACGGAAGAGGCTGGGGCAGAAGAAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064244.11
ENSMUST00000114020.10
ENSMUST00000136710.2
CDS CCA 72 bp TCAAGCCGCCAAAGGCTTGTTCCTTCTCCAGGGAGATaGTCCTCTTCTTCTGCCCCAGCCTCTTCCGTACCA +
Preference number: 6 (lower is better)
Translates to: SSRQRLVPSPGR*SSSSAPASSVP
Trigger: TGGTACGGAAGAGGCTGGGGCAGAAGAAGAGGACCATCTCCCTGGAGAAGGAACAAGCCTTTGGCGGCTTGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064244.11
ENSMUST00000114020.10
ENSMUST00000136710.2
CDS CCA 72 bp TCCTCTTCTTCTGCCCCAGCCTCTTCCGTACCAGCATaGCTGCCTCTGGGCCTATGGCATCCTCAATATCAT +
Preference number: 6 (lower is better)
Translates to: SSSSAPASSVPA*LPLGLWHPQYH
Trigger: ATGATATTGAGGATGCCATAGGCCCAGAGGCAGCCATGCTGGTACGGAAGAGGCTGGGGCAGAAGAAGAGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064244.11
ENSMUST00000114020.10
ENSMUST00000136710.2
CDS TCA 72 bp GGTTTGCAGTACTGCTCTCCCATTCCCGTTTCACCATaGCGTAAAGCCTCATTGCTGCCTGGGCATCCTGGA +
Preference number: 6 (lower is better)
Translates to: GLQYCSPIPVSP*RKASLLPGHPG
Trigger: TCCAGGATGCCCAGGCAGCAATGAGGCTTTACGTCATGGTGAAACGGGAATGGGAGAGCAGTACTGCAAACC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064244.11
ENSMUST00000114020.10
CDS CAA 72 bp GGGTGGCTTCCCGGAACCCCACTTCCTGCCAGAGCTTaGCTCTTCCTGAACTTCTTCTTGGCTTTCTTCCTA +
Preference number: 6 (lower is better)
Translates to: GWLPGTPLPARA*LFLNFFLAFFL
Trigger: TAGGAAGAAAGCCAAGAAGAAGTTCAGGAAGAGCAAAGCTCTGGCAGGAAGTGGGGTTCCGGGAAGCCACCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064244.11
ENSMUST00000114020.10
ENSMUST00000136710.2
CDS CAA 72 bp ATCCAGGGCCAAGGCTTTTGTCAAGCCGCCAAAGGCTaGTTCCTTCTCCAGGGAGATGGTCCTCTTCTTCTG +
Preference number: 6 (lower is better)
Translates to: IQGQGFCQAAKG*FLLQGDGPLLL
Trigger: CAGAAGAAGAGGACCATCTCCCTGGAGAAGGAACAAGCCTTTGGCGGCTTGACAAAAGCCTTGGCCCTGGAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064244.11
ENSMUST00000114020.10
ENSMUST00000136710.2
CDS CAA 72 bp AGCCGTTTCAGAGACGGTCGTCCACTCTTTAAATCATaGTGTAGCGCATGCCCCACCAGGATTCTGCCCTTC +
Preference number: 6 (lower is better)
Translates to: SRFRDGRPLFKS*CSACPTRILPF
Trigger: GAAGGGCAGAATCCTGGTGGGGCATGCGCTACACAATGATTTAAAGAGTGGACGACCGTCTCTGAAACGGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000136710.2
CDS TCA 72 bp TCATCAAACCAGATGTCTTCCTCAGTGGGCGTGGGCTaGTTCAAGATAACAGCTGCCTCCGTAGCTTTCCAC +
Preference number: 6 (lower is better)
Translates to: SSNQMSSSVGVG*FKITAASVAFH
Trigger: GTGGAAAGCTACGGAGGCAGCTGTTATCTTGAATCAGCCCACGCCCACTGAGGAAGACATCTGGTTTGATGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064244.11
ENSMUST00000114020.10
ENSMUST00000136710.2
CDS CAA 90 bp TTCTCAGAAAGCCGTTTCAGAGACGGTCGTCCACTCTTTAAATCATaGTGTAGCGCATGCCCCACCAGGATTCTGCCCTTCAACATTTCT +
Preference number: 6 (lower is better)
Translates to: FSESRFRDGRPLFKS*CSACPTRILPFNIS
Trigger: AGAAATGTTGAAGGGCAGAATCCTGGTGGGGCATGCGCTACACAATGATTTAAAGAGTGGACGACCGTCTCTGAAACGGCTTTCTGAGAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000136710.2