Pregenerated sensors for REX2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000067919Ensembl transcript IDs: ENSMUST00000075775.6
Found 12 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 72 bp | GCTCTACTGTTTGAAATATCTGTTGATTTGTCAGACTaGTGTTGTGGGTACTGCATTTATCACATACAAAAT | + |
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Preference number: 3 (lower is better) Translates to: ALLFEISVDLSD*CCGYCIYHIQN Trigger: ATTTTGTATGTGATAAATGCAGTACCCACAACATCAGTCTGACAAATCAACAGATATTTCAAACAGTAGAGC 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000075775.6 |
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| 3UTR TCA 72 bp | TTAGTTTCCTTTTGGAATGGATCATTTCTATCTCCATaGATTGTTGCACAACATCATATTCTTCTGGCTTTC | + |
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Preference number: 3 (lower is better) Translates to: LVSFWNGSFLSP*IVAQHHILLAF Trigger: GAAAGCCAGAAGAATATGATGTTGTGCAACAATTCATGGAGATAGAAATGATCCATTCCAAAAGGAAACTAA 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000075775.6 |
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| CDS-3UTR CCA 90 bp | CATGAATTGTTGCACAACATCATATTCTTCTGGCTTTCACACCTGACTTCATCACTGAGAGGGGATGGTTaGGTAAAGCATTTGTCGCAT | + |
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Preference number: 4 (lower is better) Translates to: HELLHNIIFFWLSHLTSSLRGDG*VKHLSH Trigger: ATGCGACAAATGCTTTACCCAACCATCCCCTCTCAG...TGATGAAGTCAGGTGTGAAAGCCAGAAGAATATGATGTTGTGCAACAATTCATG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000075775.6 |
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| CDS-3UTR GCA 90 bp | ACTCAAAGCACACTTCACATCTGTAGGCATATTATAGGATTAAGAACATGCAGTTGCTCATTGACAATGTaGTGTGTGTCTTGTTCCAAG | + |
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Preference number: 4 (lower is better) Translates to: TQSTLHICRHIIGLRTCSCSLTM*CVSCSK Trigger: CTTGGAACAAGACACACAGCACATTGTCAATGAGCA...ACTGCATGTTCTTAATCCTATAATATGCCTACAGATGTGAAGTGTGCTTTGAGT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000075775.6 |
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| 3UTR CAA 72 bp | CCTTTTGGAATGGATCATTTCTATCTCCATGAATTGTaGCACAACATCATATTCTTCTGGCTTTCACACCTG | + |
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Preference number: 4 (lower is better) Translates to: PFGMDHFYLHEL*HNIIFFWLSHL Trigger: CAGGTGTGAAAGCCAGAAGAATATGATGTTGTGCAACAATTCATGGAGATAGAAATGATCCATTCCAAAAGG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000075775.6 |
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| CDS-3UTR GCA 90 bp | TGTCACATTGACGTGATAAGAATAATGAATACTGGATACTCAAAGCACACTTCATTTCGGTTATGCCCATaGTCATTGACAATGTGCTGT | + |
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Preference number: 4 (lower is better) Translates to: CHIDVIRIMNTGYSKHTSFRLCP*SLTMCC Trigger: ACAGCACATTGTCAATGAGCATGGGCATAACCGAAA...TGAAGTGTGCTTTGAGTATCCAGTATTCATTATTCTTATCACGTCAATGTGACA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000075775.6 |
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| CDS-3UTR CCA 90 bp | CATGAATTGTTGCACAACATCATATTCTTCTGGCTTTCACACCTGACTTCATCACTAAGATGGGAAGTTTaGGTAAAGCATTTGTCACTT | + |
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Preference number: 4 (lower is better) Translates to: HELLHNIIFFWLSHLTSSLRWEV*VKHLSL Trigger: AAGTGACAAATGCTTTACCCAAACTTCCCATCTTAG...TGATGAAGTCAGGTGTGAAAGCCAGAAGAATATGATGTTGTGCAACAATTCATG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000075775.6 |
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| CDS-3UTR CCA 90 bp | TGTCACATTGACGTGATAAGAATAATGAATACTGGATACTCAAAGCACACTTCAAATACTGAGAGGGGATaGTTGGGTAAAGCATTTGTC | + |
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Preference number: 4 (lower is better) Translates to: CHIDVIRIMNTGYSKHTSNTERG*LGKAFV Trigger: GACAAATGCTTTACCCAACCATCCCCTCTCAGTATT...TGAAGTGTGCTTTGAGTATCCAGTATTCATTATTCTTATCACGTCAATGTGACA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000075775.6 |
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| CDS-3UTR CCA 90 bp | CATGAATTGTTGCACAACATCATATTCTTCTGGCTTTCACACCTGACTTCATCACTAAGATGGCATTGTTaGGTAAAGCATTTGTCACAT | + |
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Preference number: 4 (lower is better) Translates to: HELLHNIIFFWLSHLTSSLRWHC*VKHLSH Trigger: ATGTGACAAATGCTTTACCCAACAATGCCATCTTAG...TGATGAAGTCAGGTGTGAAAGCCAGAAGAATATGATGTTGTGCAACAATTCATG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000075775.6 |
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| CDS-3UTR CAA 90 bp | TGTCACATTGACGTGATAAGAATAATGAATACTGGATACTCAAAGCACACTTCATTATGCCCATGCTCATaGACAATGTGCTGTGTGTCT | + |
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Preference number: 5 (lower is better) Translates to: CHIDVIRIMNTGYSKHTSLCPCS*TMCCVS Trigger: AGACACACAGCACATTGTCAATGAGCATGGGCATAA...TGAAGTGTGCTTTGAGTATCCAGTATTCATTATTCTTATCACGTCAATGTGACA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000075775.6 |
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| CDS-3UTR CAA 90 bp | TGTCACATTGACGTGATAAGAATAATGAATACTGGATACTCAAAGCACACTTCAACTAAGATGGCATTGTaGGGTAAAGCATTTGTCACA | + |
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Preference number: 5 (lower is better) Translates to: CHIDVIRIMNTGYSKHTSTKMAL*GKAFVT Trigger: TGTGACAAATGCTTTACCCAACAATGCCATCTTAGT...TGAAGTGTGCTTTGAGTATCCAGTATTCATTATTCTTATCACGTCAATGTGACA 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000075775.6 |
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| CDS CAA 90 bp | CTTCTTTCGGTTATGCCCATGCTCATTGACAATGTGCTGTGTGTCTaGTTCCAAGACCTTCTCCTTCTCATAGTTTCCACATATGCAGTG | + |
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Preference number: 6 (lower is better) Translates to: LLSVMPMLIDNVLCV*FQDLLLLIVSTYAV Trigger: CACTGCATATGTGGAAACTATGAGAAGGAGAAGGTCTTGGAACAAGACACACAGCACATTGTCAATGAGCATGGGCATAACCGAAAGAAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000075775.6 |
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