Pregenerated sensors for REX1BD (Mus musculus)
Ensembl gene IDs: ENSMUSG00000058833Ensembl transcript IDs: ENSMUST00000075175.12, ENSMUST00000136913.2
Found 33 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GGGCAGCCCAGCAGGGCACGACCTCAGCCAGCTGGCGGTCAGGGCTaGGCTCGACGCCATGGGCCTCTTTTCCCGGCTTCCTCTGGTCCC | + |
|
Preference number: 1 (lower is better) Translates to: GQPSRARPQPAGGQG*ARRHGPLFPASSGP Trigger: GGGACCAGAGGAAGCCGGGAAAAGAGGCCCATGGCGTCGAGCCCAGCCCTGACCGCCAGCTGGCTGAGGTCGTGCCCTGCTGGGCTGCCC 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000075175.12 ENSMUST00000136913.2 |
||
| 3UTR CCA 72 bp | CGCCATGGGCCTCTTTTCCCGGCTTCCTCTGGTCCCTaGGGAGCCGCCCTCACTCGGCAGATTCCGCATCAA | + |
|
Preference number: 3 (lower is better) Translates to: RHGPLFPASSGP*GAALTRQIPHQ Trigger: TTGATGCGGAATCTGCCGAGTGAGGGCGGCTCCCCAGGGACCAGAGGAAGCCGGGAAAAGAGGCCCATGGCG 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000136913.2 |
||
| 3UTR TCA 72 bp | GGAGCCGCCCTCACTCGGCAGATTCCGCATCAAACCTaGGTTCCTGCAGAACCTCGCCGATCGCCTCCATGG | + |
|
Preference number: 3 (lower is better) Translates to: GAALTRQIPHQT*VPAEPRRSPPW Trigger: CCATGGAGGCGATCGGCGAGGTTCTGCAGGAACTCAGGTTTGATGCGGAATCTGCCGAGTGAGGGCGGCTCC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000136913.2 |
||
| 3UTR GCA 72 bp | CCTCACTCGGCAGATTCCGCATCAAACCTGAGTTCCTaGAGAACCTCGCCGATCGCCTCCATGGTTTTAATT | + |
|
Preference number: 3 (lower is better) Translates to: PHSADSASNLSS*RTSPIASMVLI Trigger: AATTAAAACCATGGAGGCGATCGGCGAGGTTCTGCAGGAACTCAGGTTTGATGCGGAATCTGCCGAGTGAGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000136913.2 |
||
| CDS-3UTR CCA 90 bp | TGGCGGTCAGGGCTGGGCTCGACGCCATGGGCCTCTTTTCCCGGCTTCCTCTGGTGCAGGCTGCGCACGTaGCGGGCGAGCACCGGTTGC | + |
|
Preference number: 4 (lower is better) Translates to: WRSGLGSTPWASFPGFLWCRLRT*RASTGC Trigger: GCAACCGGTGCTCGCCCGCCACGTGCGCAGCCTGCA...CCAGAGGAAGCCGGGAAAAGAGGCCCATGGCGTCGAGCCCAGCCCTGACCGCCA 70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000075175.12 ENSMUST00000136913.2 |
||
| CDS-3UTR CCA 90 bp | CTGGCGGTCAGGGCTGGGCTCGACGCCATGGGCCTCTTTTCCCGGCTTCCTCTGTGCAGGCTGCGCACGTaGCGGGCGAGCACCGGTTGC | + |
|
Preference number: 4 (lower is better) Translates to: LAVRAGLDAMGLFSRLPLCRLRT*RASTGC Trigger: GCAACCGGTGCTCGCCCGCCACGTGCGCAGCCTGCA...CAGAGGAAGCCGGGAAAAGAGGCCCATGGCGTCGAGCCCAGCCCTGACCGCCAG 70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000075175.12 ENSMUST00000136913.2 |
||
| CDS-3UTR GCA 90 bp | TGGCGGTCAGGGCTGGGCTCGACGCCATGGGCCTCTTTTCCCGGCTTCCTCTGGCTAGCTCCTGCAGGCTaGGCACGTGGCGGGCGAGCA | + |
|
Preference number: 4 (lower is better) Translates to: WRSGLGSTPWASFPGFLWLAPAG*ARGGRA Trigger: TGCTCGCCCGCCACGTGCGCAGCCTGCAGGAGCTAG...CCAGAGGAAGCCGGGAAAAGAGGCCCATGGCGTCGAGCCCAGCCCTGACCGCCA 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000075175.12 ENSMUST00000136913.2 |
||
| CDS-3UTR GCA 90 bp | GCGGTCAGGGCTGGGCTCGACGCCATGGGCCTCTTTTCCCGGCTTCCTCTGGTCCTAGCTCCTGCAGGCTaGGCACGTGGCGGGCGAGCA | + |
|
Preference number: 4 (lower is better) Translates to: AVRAGLDAMGLFSRLPLVLAPAG*ARGGRA Trigger: TGCTCGCCCGCCACGTGCGCAGCCTGCAGGAGCTAG...GACCAGAGGAAGCCGGGAAAAGAGGCCCATGGCGTCGAGCCCAGCCCTGACCGC 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000075175.12 ENSMUST00000136913.2 |
||
| CDS-3UTR CCA 90 bp | AGCTGGCGGTCAGGGCTGGGCTCGACGCCATGGGCCTCTTTTCCCGGCTTCCTCGCAGCGGCGAAGGCCTaGGTCACCTCGTGCACGACA | + |
|
Preference number: 4 (lower is better) Translates to: SWRSGLGSTPWASFPGFLAAAKA*VTSCTT Trigger: TGTCGTGCACGAGGTGACCCAGGCCTTCGCCGCTGC...GAGGAAGCCGGGAAAAGAGGCCCATGGCGTCGAGCCCAGCCCTGACCGCCAGCT 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000075175.12 ENSMUST00000136913.2 |
||
| CDS-3UTR GCA 90 bp | GTGAGGCACATTGGAGGGCAGCCCAGCAGGGCACGACCTCAGCCAGCTGGCGGTGTCTGTTCTAGCTCCTaGAGGCTGCGCACGTGGCGG | + |
|
Preference number: 4 (lower is better) Translates to: VRHIGGQPSRARPQPAGGVCSSS*RLRTWR Trigger: CCGCCACGTGCGCAGCCTGCAGGAGCTAGAACAGAC...ACCGCCAGCTGGCTGAGGTCGTGCCCTGCTGGGCTGCCCTCCAATGTGCCTCAC 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000075175.12 ENSMUST00000136913.2 |
||
| CDS-3UTR CCA 90 bp | TCAGGGCTGGGCTCGACGCCATGGGCCTCTTTTCCCGGCTTCCTCTGGTCCCTGGCAGCGGCGAAGGCCTaGGTCACCTCGTGCACGACA | + |
|
Preference number: 4 (lower is better) Translates to: SGLGSTPWASFPGFLWSLAAAKA*VTSCTT Trigger: TGTCGTGCACGAGGTGACCCAGGCCTTCGCCGCTGC...CAGGGACCAGAGGAAGCCGGGAAAAGAGGCCCATGGCGTCGAGCCCAGCCCTGA 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000075175.12 ENSMUST00000136913.2 |
||
| CDS-3UTR GCA 90 bp | TGGGCTCGACGCCATGGGCCTCTTTTCCCGGCTTCCTCTGGTCCCTGGGGAGCCCAACTCTGCTTCCACTaGCAATACCTCCCGCGAGGC | + |
|
Preference number: 4 (lower is better) Translates to: WARRHGPLFPASSGPWGAQLCFH*QYLPRG Trigger: GCCTCGCGGGAGGTATTGGCAGTGGAAGCAGAGTTG...GGCTCCCCAGGGACCAGAGGAAGCCGGGAAAAGAGGCCCATGGCGTCGAGCCCA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000075175.12 ENSMUST00000136913.2 |
||
| CDS-3UTR GCA 90 bp | AGCTGGCGGTCAGGGCTGGGCTCGACGCCATGGGCCTCTTTTCCCGGCTTCCTCTCAAACCTGAGTTCCTaGAGAACCTCGCCGATCGCC | + |
|
Preference number: 4 (lower is better) Translates to: SWRSGLGSTPWASFPGFLSNLSS*RTSPIA Trigger: GGCGATCGGCGAGGTTCTGCAGGAACTCAGGTTTGA...GAGGAAGCCGGGAAAAGAGGCCCATGGCGTCGAGCCCAGCCCTGACCGCCAGCT 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000075175.12 |
||
| CDS-3UTR TCA 90 bp | GGCTGGGCTCGACGCCATGGGCCTCTTTTCCCGGCTTCCTCTGGTCCCTGGGGAATTCCGCATCAAACCTaGGTTCCTGCAGAACCTCGC | + |
|
Preference number: 4 (lower is better) Translates to: GWARRHGPLFPASSGPWGIPHQT*VPAEPR Trigger: GCGAGGTTCTGCAGGAACTCAGGTTTGATGCGGAAT...TCCCCAGGGACCAGAGGAAGCCGGGAAAAGAGGCCCATGGCGTCGAGCCCAGCC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000075175.12 |
||
| CDS-3UTR GCA 90 bp | CCTCTGGTCCCTGGGGAGCCGCCCTCACTCGGCAGATTCCGCATCAAACCTGAGCAACTCTGCTTCCACTaGCAATACCTCCCGCGAGGC | + |
|
Preference number: 4 (lower is better) Translates to: PLVPGEPPSLGRFRIKPEQLCFH*QYLPRG Trigger: GCCTCGCGGGAGGTATTGGCAGTGGAAGCAGAGTTG...CTCAGGTTTGATGCGGAATCTGCCGAGTGAGGGCGGCTCCCCAGGGACCAGAGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000136913.2 |
||
| CDS-3UTR CAA 90 bp | GCCAGCTGGCGGTCAGGGCTGGGCTCGACGCCATGGGCCTCTTTTCCCGGCTTCGCGGGCGAGCACCGGTaGCGCTCGAGGCCCTGCCAA | + |
|
Preference number: 5 (lower is better) Translates to: ASWRSGLGSTPWASFPGFAGEHR*RSRPCQ Trigger: TTGGCAGGGCCTCGAGCGCAACCGGTGCTCGCCCGC...GAAGCCGGGAAAAGAGGCCCATGGCGTCGAGCCCAGCCCTGACCGCCAGCTGGC 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000075175.12 ENSMUST00000136913.2 |
||
| CDS GCA 90 bp | CAGGCTGCGCACGTGGCGGGCGAGCACCGGTTGCGCTCGAGGCCCTaGCAACTCTGCTTCCACTGCCAATACCTCCCGCGAGGCAGCGGC | + |
|
Preference number: 5 (lower is better) Translates to: QAAHVAGEHRLRSRP*QLCFHCQYLPRGSG Trigger: GCCGCTGCCTCGCGGGAGGTATTGGCAGTGGAAGCAGAGTTGGCAGGGCCTCGAGCGCAACCGGTGCTCGCCCGCCACGTGCGCAGCCTG 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000075175.12 ENSMUST00000136913.2 |
||
| CDS GCA 90 bp | ACAGTGCCACCGTGGCCAGGCGCGTCTGTTCTAGCTCCTGCAGGCTaGGCACGTGGCGGGCGAGCACCGGTTGCGCTCGAGGCCCTGCCA | + |
|
Preference number: 5 (lower is better) Translates to: TVPPWPGASVLAPAG*ARGGRAPVALEALP Trigger: TGGCAGGGCCTCGAGCGCAACCGGTGCTCGCCCGCCACGTGCGCAGCCTGCAGGAGCTAGAACAGACGCGCCTGGCCACGGTGGCACTGT 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000075175.12 ENSMUST00000136913.2 |
||
| CDS GCA 90 bp | CACGTGGCGGGCGAGCACCGGTTGCGCTCGAGGCCCTGCCAACTCTaGTTCCACTGCCAATACCTCCCGCGAGGCAGCGGCGAAGGCCTG | + |
|
Preference number: 5 (lower is better) Translates to: HVAGEHRLRSRPCQL*FHCQYLPRGSGEGL Trigger: CAGGCCTTCGCCGCTGCCTCGCGGGAGGTATTGGCAGTGGAAGCAGAGTTGGCAGGGCCTCGAGCGCAACCGGTGCTCGCCCGCCACGTG 70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000075175.12 ENSMUST00000136913.2 |
||
| CDS GCA 90 bp | ACCTGCAACAGTGCCACCGTGGCCAGGCGCGTCTGTTCTAGCTCCTaGAGGCTGCGCACGTGGCGGGCGAGCACCGGTTGCGCTCGAGGC | + |
|
Preference number: 5 (lower is better) Translates to: TCNSATVARRVCSSS*RLRTWRASTGCARG Trigger: GCCTCGAGCGCAACCGGTGCTCGCCCGCCACGTGCGCAGCCTGCAGGAGCTAGAACAGACGCGCCTGGCCACGGTGGCACTGTTGCAGGT 70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000075175.12 ENSMUST00000136913.2 |
||
| CDS CCA 90 bp | ACCGTGGCCAGGCGCGTCTGTTCTAGCTCCTGCAGGCTGCGCACGTaGCGGGCGAGCACCGGTTGCGCTCGAGGCCCTGCCAACTCTGCT | + |
|
Preference number: 5 (lower is better) Translates to: TVARRVCSSSCRLRT*RASTGCARGPANSA Trigger: AGCAGAGTTGGCAGGGCCTCGAGCGCAACCGGTGCTCGCCCGCCACGTGCGCAGCCTGCAGGAGCTAGAACAGACGCGCCTGGCCACGGT 70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000075175.12 ENSMUST00000136913.2 |
||
| CDS GCA 90 bp | GGCGAGCACCGGTTGCGCTCGAGGCCCTGCCAACTCTGCTTCCACTaGCAATACCTCCCGCGAGGCAGCGGCGAAGGCCTGGGTCACCTC | + |
|
Preference number: 5 (lower is better) Translates to: GEHRLRSRPCQLCFH*QYLPRGSGEGLGHL Trigger: GAGGTGACCCAGGCCTTCGCCGCTGCCTCGCGGGAGGTATTGGCAGTGGAAGCAGAGTTGGCAGGGCCTCGAGCGCAACCGGTGCTCGCC 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000075175.12 ENSMUST00000136913.2 |
||
| CDS-3UTR CAA 90 bp | TTATTGCGTGAGGCACATTGGAGGGCAGCCCAGCAGGGCACGACCTCAGCCAGCGCGGGCGAGCACCGGTaGCGCTCGAGGCCCTGCCAA | + |
|
Preference number: 5 (lower is better) Translates to: LLREAHWRAAQQGTTSASAGEHR*RSRPCQ Trigger: TTGGCAGGGCCTCGAGCGCAACCGGTGCTCGCCCGC...GCTGGCTGAGGTCGTGCCCTGCTGGGCTGCCCTCCAATGTGCCTCACGCAATAA 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000075175.12 ENSMUST00000136913.2 |
||
| CDS GCA 90 bp | TGTTCTAGCTCCTGCAGGCTGCGCACGTGGCGGGCGAGCACCGGTTaGGCTCGAGGCCCTGCCAACTCTGCTTCCACTGCCAATACCTCC | + |
|
Preference number: 5 (lower is better) Translates to: CSSSCRLRTWRASTG*ARGPANSASTANTS Trigger: GGAGGTATTGGCAGTGGAAGCAGAGTTGGCAGGGCCTCGAGCGCAACCGGTGCTCGCCCGCCACGTGCGCAGCCTGCAGGAGCTAGAACA 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000075175.12 ENSMUST00000136913.2 |
||
| CDS GCA 72 bp | CCGTGGCCAGGCGCGTCTGTTCTAGCTCCTGCAGGCTaGGCACGTGGCGGGCGAGCACCGGTTGCGCTCGAG | + |
|
Preference number: 6 (lower is better) Translates to: PWPGASVLAPAG*ARGGRAPVALE Trigger: CTCGAGCGCAACCGGTGCTCGCCCGCCACGTGCGCAGCCTGCAGGAGCTAGAACAGACGCGCCTGGCCACGG 72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000075175.12 ENSMUST00000136913.2 |
||
| CDS CCA 72 bp | AGGCGCGTCTGTTCTAGCTCCTGCAGGCTGCGCACGTaGCGGGCGAGCACCGGTTGCGCTCGAGGCCCTGCC | + |
|
Preference number: 6 (lower is better) Translates to: RRVCSSSCRLRT*RASTGCARGPA Trigger: GGCAGGGCCTCGAGCGCAACCGGTGCTCGCCCGCCACGTGCGCAGCCTGCAGGAGCTAGAACAGACGCGCCT 72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000075175.12 ENSMUST00000136913.2 |
||
| CDS GCA 72 bp | TCCTGCAGGCTGCGCACGTGGCGGGCGAGCACCGGTTaGGCTCGAGGCCCTGCCAACTCTGCTTCCACTGCC | + |
|
Preference number: 6 (lower is better) Translates to: SCRLRTWRASTG*ARGPANSASTA Trigger: GGCAGTGGAAGCAGAGTTGGCAGGGCCTCGAGCGCAACCGGTGCTCGCCCGCCACGTGCGCAGCCTGCAGGA 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000075175.12 ENSMUST00000136913.2 |
||
| CDS GCA 72 bp | AGTGCCACCGTGGCCAGGCGCGTCTGTTCTAGCTCCTaGAGGCTGCGCACGTGGCGGGCGAGCACCGGTTGC | + |
|
Preference number: 6 (lower is better) Translates to: SATVARRVCSSS*RLRTWRASTGC Trigger: GCAACCGGTGCTCGCCCGCCACGTGCGCAGCCTGCAGGAGCTAGAACAGACGCGCCTGGCCACGGTGGCACT 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000075175.12 ENSMUST00000136913.2 |
||
| CDS CAA 72 bp | CTCCTGCAGGCTGCGCACGTGGCGGGCGAGCACCGGTaGCGCTCGAGGCCCTGCCAACTCTGCTTCCACTGC | + |
|
Preference number: 6 (lower is better) Translates to: LLQAAHVAGEHR*RSRPCQLCFHC Trigger: GCAGTGGAAGCAGAGTTGGCAGGGCCTCGAGCGCAACCGGTGCTCGCCCGCCACGTGCGCAGCCTGCAGGAG 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000075175.12 ENSMUST00000136913.2 |
||
| CDS GCA 72 bp | GGCGAGCACCGGTTGCGCTCGAGGCCCTGCCAACTCTaGTTCCACTGCCAATACCTCCCGCGAGGCAGCGGC | + |
|
Preference number: 6 (lower is better) Translates to: GEHRLRSRPCQL*FHCQYLPRGSG Trigger: GCCGCTGCCTCGCGGGAGGTATTGGCAGTGGAAGCAGAGTTGGCAGGGCCTCGAGCGCAACCGGTGCTCGCC 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000075175.12 ENSMUST00000136913.2 |
||
| CDS GCA 72 bp | CGGTTGCGCTCGAGGCCCTGCCAACTCTGCTTCCACTaGCAATACCTCCCGCGAGGCAGCGGCGAAGGCCTG | + |
|
Preference number: 6 (lower is better) Translates to: RLRSRPCQLCFH*QYLPRGSGEGL Trigger: CAGGCCTTCGCCGCTGCCTCGCGGGAGGTATTGGCAGTGGAAGCAGAGTTGGCAGGGCCTCGAGCGCAACCG 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000075175.12 ENSMUST00000136913.2 |
||
| CDS GCA 72 bp | CACGTGGCGGGCGAGCACCGGTTGCGCTCGAGGCCCTaGCAACTCTGCTTCCACTGCCAATACCTCCCGCGA | + |
|
Preference number: 6 (lower is better) Translates to: HVAGEHRLRSRP*QLCFHCQYLPR Trigger: TCGCGGGAGGTATTGGCAGTGGAAGCAGAGTTGGCAGGGCCTCGAGCGCAACCGGTGCTCGCCCGCCACGTG 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000075175.12 ENSMUST00000136913.2 |
||
| CDS CCA 72 bp | CTCCTGGTGTCCCCATCACCTGCAACAGTGCCACCGTaGCCAGGCGCGTCTGTTCTAGCTCCTGCAGGCTGC | + |
|
Preference number: 6 (lower is better) Translates to: LLVSPSPATVPP*PGASVLAPAGC Trigger: GCAGCCTGCAGGAGCTAGAACAGACGCGCCTGGCCACGGTGGCACTGTTGCAGGTGATGGGGACACCAGGAG 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000075175.12 ENSMUST00000136913.2 |
||