RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for RETNLG (Mus musculus)

Ensembl gene IDs: ENSMUSG00000022651

Ensembl transcript IDs: ENSMUST00000065666.6

Found 18 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp TCAAGAAGCAGGGCTAATGGACAATATGAATTCATCAATGGGATATaGGCCAGGTTTCCAAGTTGGGATTGTGCTTTTGTTATAGTCTTC +
Preference number: 1 (lower is better)
Translates to: SRSRANGQYEFINGI*ARFPSWDCAFVIVF
Trigger: GAAGACTATAACAAAAGCACAATCCCAACTTGGAAACCTGGCTCATATCCCATTGATGAATTCATATTGTCCATTAGCCCTGCTTCTTGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000065666.6
3UTR TCA 72 bp AGGGCTAATGGACAATATGAATTCATCAATGGGATATaGGCCAGGTTTCCAAGTTGGGATTGTGCTTTTGTT +
Preference number: 3 (lower is better)
Translates to: RANGQYEFINGI*ARFPSWDCAFV
Trigger: AACAAAAGCACAATCCCAACTTGGAAACCTGGCTCATATCCCATTGATGAATTCATATTGTCCATTAGCCCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000065666.6
CDS-3UTR TCA 90 bp CATCAATGGGATATGAGCCAGGTTTCCAAGTTGGGATTGTGCTTTTGTTATAGTGGCCCAGTCCATTGTTaGGCACTGACAGTGGCAAGT +
Preference number: 4 (lower is better)
Translates to: HQWDMSQVSKLGLCFCYSGPVHC*ALTVAS
Trigger: ACTTGCCACTGTCAGTGCTCAACAATGGACTGGGCC...ACTATAACAAAAGCACAATCCCAACTTGGAAACCTGGCTCATATCCCATTGATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000065666.6
CDS-3UTR CCA 90 bp GCAGGGCTAATGGACAATATGAATTCATCAATGGGATATGAGCCAGGTTTCCAAACTGGGACCATCAGCTaGAGAAGGGAGATGCAGATG +
Preference number: 4 (lower is better)
Translates to: AGLMDNMNSSMGYEPGFQTGTIS*RREMQM
Trigger: CATCTGCATCTCCCTTCTCCAGCTGATGGTCCCAGT...TTGGAAACCTGGCTCATATCCCATTGATGAATTCATATTGTCCATTAGCCCTGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000065666.6
CDS-3UTR TCA 90 bp GCAGGGCTAATGGACAATATGAATTCATCAATGGGATATGAGCCAGGTTTCCAACACAAGCACAACCAGTaGCAGTCATTCCAGAAGGAC +
Preference number: 4 (lower is better)
Translates to: AGLMDNMNSSMGYEPGFQHKHNQ*QSFQKD
Trigger: GTCCTTCTGGAATGACTGTCACTGGTTGTGCTTGTG...TTGGAAACCTGGCTCATATCCCATTGATGAATTCATATTGTCCATTAGCCCTGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000065666.6
CDS-3UTR CCA 90 bp ATTCATCAATGGGATATGAGCCAGGTTTCCAAGTTGGGATTGTGCTTTTGTTATCCCCTCAGTATTCACTaGGACCATCAGCTGGAGAAG +
Preference number: 4 (lower is better)
Translates to: IHQWDMSQVSKLGLCFCYPLSIH*DHQLEK
Trigger: CTTCTCCAGCTGATGGTCCCAGTGAATACTGAGGGG...ATAACAAAAGCACAATCCCAACTTGGAAACCTGGCTCATATCCCATTGATGAAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000065666.6
CDS-3UTR TCA 90 bp GGGCTAATGGACAATATGAATTCATCAATGGGATATGAGCCAGGTTTCCAAGTTTCCATTGTTGAGCACTaGCAGTGGCAAGTATTTCCA +
Preference number: 4 (lower is better)
Translates to: GLMDNMNSSMGYEPGFQVSIVEH*QWQVFP
Trigger: TGGAAATACTTGCCACTGTCAGTGCTCAACAATGGA...AACTTGGAAACCTGGCTCATATCCCATTGATGAATTCATATTGTCCATTAGCCC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000065666.6
CDS-3UTR CCA 90 bp TTTCAAGAAGCAGGGCTAATGGACAATATGAATTCATCAATGGGATATGAGCCAAAGTCTTTGTTACAGTaGAGGGACAGTCATCTCGAT +
Preference number: 4 (lower is better)
Translates to: FQEAGLMDNMNSSMGYEPKSLLQ*RDSHLD
Trigger: ATCGAGATGACTGTCCCTCCACTGTAACAAAGACTT...TGGCTCATATCCCATTGATGAATTCATATTGTCCATTAGCCCTGCTTCTTGAAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000065666.6
CDS TCA 90 bp ACAACCAGTGACAGTCATTCCAGAAGGACAGGAGGCCAGTCTGCCTaGAGCCGTGATACTAGTACAGGAGAAAGTCTTTGTTACAGTGGA +
Preference number: 5 (lower is better)
Translates to: TTSDSHSRRTGGQSA*SRDTSTGESLCYSG
Trigger: TCCACTGTAACAAAGACTTTCTCCTGTACTAGTATCACGGCTTCAGGCAGACTGGCCTCCTGTCCTTCTGGAATGACTGTCACTGGTTGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000065666.6
CDS-3UTR CAA 90 bp ATGGACAATATGAATTCATCAATGGGATATGAGCCAGGTTTCCAAGTTGGGATTGGACAGTCATCTCGATaGGCAAGAAGTTCCTTGACC +
Preference number: 5 (lower is better)
Translates to: MDNMNSSMGYEPGFQVGIGQSSR*ARSSLT
Trigger: GGTCAAGGAACTTCTTGCCAATCGAGATGACTGTCC...AATCCCAACTTGGAAACCTGGCTCATATCCCATTGATGAATTCATATTGTCCAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000065666.6
CDS-3UTR CAA 90 bp AATTCATCAATGGGATATGAGCCAGGTTTCCAAGTTGGGATTGTGCTTTTGTTATACAGGAGAAAGTCTTaGTTACAGTGGAGGGACAGT +
Preference number: 5 (lower is better)
Translates to: NSSMGYEPGFQVGIVLLLYRRKS*LQWRDS
Trigger: ACTGTCCCTCCACTGTAACAAAGACTTTCTCCTGTA...TAACAAAAGCACAATCCCAACTTGGAAACCTGGCTCATATCCCATTGATGAATT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000065666.6
CDS-3UTR CAA 90 bp ATGGACAATATGAATTCATCAATGGGATATGAGCCAGGTTTCCAAGTTGGGATTTTGGCAAGAAGTTCCTaGACCTTTTTCTCCACAATA +
Preference number: 5 (lower is better)
Translates to: MDNMNSSMGYEPGFQVGILARSS*TFFSTI
Trigger: TATTGTGGAGAAAAAGGTCAAGGAACTTCTTGCCAA...AATCCCAACTTGGAAACCTGGCTCATATCCCATTGATGAATTCATATTGTCCAT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000065666.6
CDS CAA 72 bp AGGCCAGTTGGCAGCAACGGGCGGTGGCCCAGTCCATaGTTGAGCACTGACAGTGGCAAGTATTTCCATCCC +
Preference number: 6 (lower is better)
Translates to: RPVGSNGRWPSP*LSTDSGKYFHP
Trigger: GGGATGGAAATACTTGCCACTGTCAGTGCTCAACAATGGACTGGGCCACCGCCCGTTGCTGCCAACTGGCCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000065666.6
CDS TCA 72 bp CAGTTGGCAGCAACGGGCGGTGGCCCAGTCCATTGTTaGGCACTGACAGTGGCAAGTATTTCCATCCCGGAT +
Preference number: 6 (lower is better)
Translates to: QLAATGGGPVHC*ALTVASISIPD
Trigger: ATCCGGGATGGAAATACTTGCCACTGTCAGTGCTCAACAATGGACTGGGCCACCGCCCGTTGCTGCCAACTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000065666.6
CDS TCA 72 bp CAGCAACGGGCGGTGGCCCAGTCCATTGTTGAGCACTaGCAGTGGCAAGTATTTCCATCCCGGATATCCCAA +
Preference number: 6 (lower is better)
Translates to: QQRAVAQSIVEH*QWQVFPSRISQ
Trigger: TTGGGATATCCGGGATGGAAATACTTGCCACTGTCAGTGCTCAACAATGGACTGGGCCACCGCCCGTTGCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000065666.6
CDS TCA 72 bp GACAGTCATTCCAGAAGGACAGGAGGCCAGTCTGCCTaGAGCCGTGATACTAGTACAGGAGAAAGTCTTTGT +
Preference number: 6 (lower is better)
Translates to: DSHSRRTGGQSA*SRDTSTGESLC
Trigger: ACAAAGACTTTCTCCTGTACTAGTATCACGGCTTCAGGCAGACTGGCCTCCTGTCCTTCTGGAATGACTGTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000065666.6
CDS CAA 90 bp TTTGTTACAGTGGAGGGACAGTCATCTCGATTGGCAAGAAGTTCCTaGACCTTTTTCTCCACAATAGATTCTAAGGTCCCCTCAGTATTC +
Preference number: 6 (lower is better)
Translates to: FVTVEGQSSRLARSS*TFFSTIDSKVPSVF
Trigger: GAATACTGAGGGGACCTTAGAATCTATTGTGGAGAAAAAGGTCAAGGAACTTCTTGCCAATCGAGATGACTGTCCCTCCACTGTAACAAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000065666.6
CDS CAA 72 bp AAAGTCTTTGTTACAGTGGAGGGACAGTCATCTCGATaGGCAAGAAGTTCCTTGACCTTTTTCTCCACAATA +
Preference number: 6 (lower is better)
Translates to: KVFVTVEGQSSR*ARSSLTFFSTI
Trigger: TATTGTGGAGAAAAAGGTCAAGGAACTTCTTGCCAATCGAGATGACTGTCCCTCCACTGTAACAAAGACTTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000065666.6