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Pregenerated sensors for RETNLB (Mus musculus)

Ensembl gene IDs: ENSMUSG00000022650

Ensembl transcript IDs: ENSMUST00000023328.8

Found 9 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 72 bp TTATTTAGTAATATGAAGACAATGAGTCAGGTTTCCTaGTCGAGACCGTGGTTTCATTATGCTCATCATTTT +
Preference number: 3 (lower is better)
Translates to: LFSNMKTMSQVS*SRPWFHYAHHF
Trigger: AAAATGATGAGCATAATGAAACCACGGTCTCGACCAGGAAACCTGACTCATTGTCTTCATATTACTAAATAA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023328.8
CDS CCA 90 bp GCCATTCGGCAGCAGCGGGCAGAGGCCCAGTCCATGACTGAGCACTaGCAGTGGCAAGTATTTCCATTCCGGATATCCCACGATCCACAG +
Preference number: 5 (lower is better)
Translates to: AIRQQRAEAQSMTEH*QWQVFPFRISHDPQ
Trigger: CTGTGGATCGTGGGATATCCGGAATGGAAATACTTGCCACTGCCAGTGCTCAGTCATGGACTGGGCCTCTGCCCGCTGCTGCCGAATGGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023328.8
CDS CCA 90 bp CACCAAAGACTCAAAGGAGCATTGCGCGTTCCCTGGGACTATCAGTaGGAGAAGGGAGACGAGGATGAAAAGGAAACACAGTGTAGGCTT +
Preference number: 5 (lower is better)
Translates to: HQRLKGALRVPWDYQ*EKGDEDEKETQCRL
Trigger: AAGCCTACACTGTGTTTCCTTTTCATCCTCGTCTCCCTTCTCCCACTGATAGTCCCAGGGAACGCGCAATGCTCCTTTGAGTCTTTGGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023328.8
CDS-3UTR CAA 90 bp AGTCAGGTTTCCTGGTCGAGACCGTGGTTTCATTATGCTCATCATTTTGAAATTAGCTTCCTTGATCCTTaGATCCACCAAAGACTCAAA +
Preference number: 5 (lower is better)
Translates to: SQVSWSRPWFHYAHHFEISFLDP*IHQRLK
Trigger: TTTGAGTCTTTGGTGGATCAAAGGATCAAGGAAGCT...AATTTCAAAATGATGAGCATAATGAAACCACGGTCTCGACCAGGAAACCTGACT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023328.8
CDS CCA 72 bp CAGCAGCGGGCAGAGGCCCAGTCCATGACTGAGCACTaGCAGTGGCAAGTATTTCCATTCCGGATATCCCAC +
Preference number: 6 (lower is better)
Translates to: QQRAEAQSMTEH*QWQVFPFRISH
Trigger: GTGGGATATCCGGAATGGAAATACTTGCCACTGCCAGTGCTCAGTCATGGACTGGGCCTCTGCCCGCTGCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023328.8
CDS CCA 72 bp CGGGCAGAGGCCCAGTCCATGACTGAGCACTGGCAGTaGCAAGTATTTCCATTCCGGATATCCCACGATCCA +
Preference number: 6 (lower is better)
Translates to: RAEAQSMTEHWQ*QVFPFRISHDP
Trigger: TGGATCGTGGGATATCCGGAATGGAAATACTTGCCACTGCCAGTGCTCAGTCATGGACTGGGCCTCTGCCCG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023328.8
CDS CCA 72 bp ATCCACCAAAGACTCAAAGGAGCATTGCGCGTTCCCTaGGACTATCAGTGGGAGAAGGGAGACGAGGATGAA +
Preference number: 6 (lower is better)
Translates to: IHQRLKGALRVP*DYQWEKGDEDE
Trigger: TTCATCCTCGTCTCCCTTCTCCCACTGATAGTCCCAGGGAACGCGCAATGCTCCTTTGAGTCTTTGGTGGAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023328.8
CDS CAA 72 bp CTTGATCCTTTGATCCACCAAAGACTCAAAGGAGCATaGCGCGTTCCCTGGGACTATCAGTGGGAGAAGGGA +
Preference number: 6 (lower is better)
Translates to: LDPLIHQRLKGA*RVPWDYQWEKG
Trigger: TCCCTTCTCCCACTGATAGTCCCAGGGAACGCGCAATGCTCCTTTGAGTCTTTGGTGGATCAAAGGATCAAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023328.8
CDS CAA 72 bp AGACGTGACACTAGTGCAGGAGATCGTCTTAGGCTCTaGACGACTGAGAGCTTCCTTGATCCTTTGATCCAC +
Preference number: 6 (lower is better)
Translates to: RRDTSAGDRLRL*TTESFLDPLIH
Trigger: GTGGATCAAAGGATCAAGGAAGCTCTCAGTCGTCAAGAGCCTAAGACGATCTCCTGCACTAGTGTCACGTCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023328.8