Pregenerated sensors for RETNLA (Mus musculus)

Ensembl gene IDs: ENSMUSG00000061100

Ensembl transcript IDs: ENSMUST00000023329.7, ENSMUST00000238847.2

Found 19 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS-3UTR CCA 90 bp	TTGAGACTGCAGTTTTTGTTAGATTCATCATATCAAAGCTGGGTTCTCCACCTCGGCAGCAGCGGGCAGTaGTCCAGTCAACGAGTAAGC	+
Preference number: 4 (lower is better) Translates to: LRLQFLLDSSYQSWVLHLGSSGQ*SSQRVS Trigger: GCTTACTCGTTGACTGGACCACTGCCCGCTGCTGCC...GAGGTGGAGAACCCAGCTTTGATATGATGAATCTAACAAAAACTGCAGTCTCAA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000023329.7 ENSMUST00000238847.2
CDS-3UTR CCA 90 bp	AGACTGCAGTTTTTGTTAGATTCATCATATCAAAGCTGGGTTCTCCACCTCTTCCAAGTATCTCCACTCTaGATCTCCCAAGATCCACAG	+
Preference number: 4 (lower is better) Translates to: RLQFLLDSSYQSWVLHLFQVSPL*ISQDPQ Trigger: CTGTGGATCTTGGGAGATCCAGAGTGGAGATACTTG...GAAGAGGTGGAGAACCCAGCTTTGATATGATGAATCTAACAAAAACTGCAGTCT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000023329.7 ENSMUST00000238847.2
CDS-3UTR TCA 90 bp	CAAATTGAGACTGCAGTTTTTGTTAGATTCATCATATCAAAGCTGGGTTCTCCACAGGACCTGGCCAGATaGGATGCTTTTATACGCCAT	+
Preference number: 4 (lower is better) Translates to: QIETAVFVRFIISKLGSPQDLAR*DAFIRH Trigger: ATGGCGTATAAAAGCATCTCATCTGGCCAGGTCCTG...TGGAGAACCCAGCTTTGATATGATGAATCTAACAAAAACTGCAGTCTCAATTTG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000023329.7
CDS-3UTR CCA 90 bp	CTGCAGTTTTTGTTAGATTCATCATATCAAAGCTGGGTTCTCCACCTCTTCATTTCAAAGTTGGCATCCTaGGGCAGAATCTCAGGAAAG	+
Preference number: 4 (lower is better) Translates to: LQFLLDSSYQSWVLHLFISKLAS*GRISGK Trigger: CTTTCCTGAGATTCTGCCCCAGGATGCCAACTTTGA...AATGAAGAGGTGGAGAACCCAGCTTTGATATGATGAATCTAACAAAAACTGCAG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023329.7
CDS-3UTR GCA 90 bp	CAAATTGAGACTGCAGTTTTTGTTAGATTCATCATATCAAAGCTGGGTTCTCCAGTAAGCACAGGCAGTTaGAAGTATCTCCACTCTGGA	+
Preference number: 4 (lower is better) Translates to: QIETAVFVRFIISKLGSPVSTGS*KYLHSG Trigger: TCCAGAGTGGAGATACTTGCAACTGCCTGTGCTTAC...TGGAGAACCCAGCTTTGATATGATGAATCTAACAAAAACTGCAGTCTCAATTTG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000023329.7 ENSMUST00000238847.2
CDS-3UTR GCA 90 bp	CTTTATTTTTCAAGAAGCATTTCAAGAAGCAGGGTAAATGGGCAATATGAACACGTAAGCACAGGCAGTTaGAAGTATCTCCACTCTGGA	+
Preference number: 4 (lower is better) Translates to: LYFSRSISRSRVNGQYEHVSTGS*KYLHSG Trigger: TCCAGAGTGGAGATACTTGCAACTGCCTGTGCTTAC...GTGTTCATATTGCCCATTTACCCTGCTTCTTGAAATGCTTCTTGAAAAATAAAG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000023329.7 ENSMUST00000238847.2
CDS-3UTR CCA 90 bp	CTTTATTTTTCAAGAAGCATTTCAAGAAGCAGGGTAAATGGGCAATATGAACACCAAGTATCTCCACTCTaGATCTCCCAAGATCCACAG	+
Preference number: 4 (lower is better) Translates to: LYFSRSISRSRVNGQYEHQVSPL*ISQDPQ Trigger: CTGTGGATCTTGGGAGATCCAGAGTGGAGATACTTG...GTGTTCATATTGCCCATTTACCCTGCTTCTTGAAATGCTTCTTGAAAAATAAAG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000023329.7 ENSMUST00000238847.2
3UTR CAA 72 bp	CACATGAGTCAGATTTCCAAATTGAGACTGCAGTTTTaGTTAGATTCATCATATCAAAGCTGGGTTCTCCAC	+
Preference number: 4 (lower is better) Translates to: HMSQISKLRLQF*LDSSYQSWVLH Trigger: GTGGAGAACCCAGCTTTGATATGATGAATCTAACAAAAACTGCAGTCTCAATTTGGAAATCTGACTCATGTG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023329.7 ENSMUST00000238847.2
CDS GCA 90 bp	GGCAGCAGCGGGCAGTGGTCCAGTCAACGAGTAAGCACAGGCAGTTaGAAGTATCTCCACTCTGGATCTCCCAAGATCCACAGGCAAAGC	+
Preference number: 5 (lower is better) Translates to: GSSGQWSSQRVSTGS*KYLHSGSPKIHRQS Trigger: GCTTTGCCTGTGGATCTTGGGAGATCCAGAGTGGAGATACTTGCAACTGCCTGTGCTTACTCGTTGACTGGACCACTGCCCGCTGCTGCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023329.7 ENSMUST00000238847.2
CDS CCA 90 bp	GCAGATGAGAAGGGAACAAGTTGTAGTCTTCATCCTATTCAAAGTTaGCATCCTGGGGCAGAATCTCAGGAAAGGTTCCAGGACCTGGCC	+
Preference number: 5 (lower is better) Translates to: ADEKGTSCSLHPIQS*HPGAESQERFQDLA Trigger: GGCCAGGTCCTGGAACCTTTCCTGAGATTCTGCCCCAGGATGCCAACTTTGAATAGGATGAAGACTACAACTTGTTCCCTTCTCATCTGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023329.7
CDS CCA 90 bp	GACCTTATTCTCCACGATAATCTCTATGGTCTCATCAGTATTCACTaGGACCATCAGCTGGAGCAGGGAGATGCAGATGAGAAGGGAACA	+
Preference number: 5 (lower is better) Translates to: DLILHDNLYGLISIH*DHQLEQGDADEKGT Trigger: TGTTCCCTTCTCATCTGCATCTCCCTGCTCCAGCTGATGGTCCCAGTGAATACTGATGAGACCATAGAGATTATCGTGGAGAATAAGGTC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023329.7 ENSMUST00000238847.2
CDS-3UTR CAA 90 bp	TCCAAATTGAGACTGCAGTTTTTGTTAGATTCATCATATCAAAGCTGGGTTCTCAGTAAGCACAGGCAGTaGCAAGTATCTCCACTCTGG	+
Preference number: 5 (lower is better) Translates to: SKLRLQFLLDSSYQSWVLSKHRQ*QVSPLW Trigger: CCAGAGTGGAGATACTTGCAACTGCCTGTGCTTACT...GAGAACCCAGCTTTGATATGATGAATCTAACAAAAACTGCAGTCTCAATTTGGA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000023329.7 ENSMUST00000238847.2
CDS-3UTR CAA 90 bp	AAGGCACATGAGTCAGATTTCCAAATTGAGACTGCAGTTTTTGTTAGATTCATCAGTAAGCACAGGCAGTaGCAAGTATCTCCACTCTGG	+
Preference number: 5 (lower is better) Translates to: KAHESDFQIETAVFVRFISKHRQ*QVSPLW Trigger: CCAGAGTGGAGATACTTGCAACTGCCTGTGCTTACT...GATGAATCTAACAAAAACTGCAGTCTCAATTTGGAAATCTGACTCATGTGCCTT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000023329.7 ENSMUST00000238847.2
CDS-3UTR CAA 90 bp	GATTTCCAAATTGAGACTGCAGTTTTTGTTAGATTCATCATATCAAAGCTGGGTTCATCCTATTCAAAGTaGGCATCCTGGGGCAGAATC	+
Preference number: 5 (lower is better) Translates to: DFQIETAVFVRFIISKLGSSYSK*ASWGRI Trigger: GATTCTGCCCCAGGATGCCAACTTTGAATAGGATGA...ACCCAGCTTTGATATGATGAATCTAACAAAAACTGCAGTCTCAATTTGGAAATC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000023329.7
CDS-3UTR CAA 90 bp	TCCAAATTGAGACTGCAGTTTTTGTTAGATTCATCATATCAAAGCTGGGTTCTCCATCTGTTCATAGTCTaGACACTAGTGCAAGAGAGA	+
Preference number: 5 (lower is better) Translates to: SKLRLQFLLDSSYQSWVLHLFIV*TLVQER Trigger: TCTCTCTTGCACTAGTGTCAAGACTATGAACAGATG...GAGAACCCAGCTTTGATATGATGAATCTAACAAAAACTGCAGTCTCAATTTGGA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000023329.7 ENSMUST00000238847.2
CDS-3UTR CAA 90 bp	GATTTCCAAATTGAGACTGCAGTTTTTGTTAGATTCATCATATCAAAGCTGGGTCATCTGTTCATAGTCTaGACACTAGTGCAAGAGAGA	+
Preference number: 5 (lower is better) Translates to: DFQIETAVFVRFIISKLGHLFIV*TLVQER Trigger: TCTCTCTTGCACTAGTGTCAAGACTATGAACAGATG...ACCCAGCTTTGATATGATGAATCTAACAAAAACTGCAGTCTCAATTTGGAAATC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000023329.7 ENSMUST00000238847.2
CDS CAA 90 bp	TGGCAGCAGCGGGCAGTGGTCCAGTCAACGAGTAAGCACAGGCAGTaGCAAGTATCTCCACTCTGGATCTCCCAAGATCCACAGGCAAAG	+
Preference number: 6 (lower is better) Translates to: WQQRAVVQSTSKHRQ*QVSPLWISQDPQAK Trigger: CTTTGCCTGTGGATCTTGGGAGATCCAGAGTGGAGATACTTGCAACTGCCTGTGCTTACTCGTTGACTGGACCACTGCCCGCTGCTGCCA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023329.7 ENSMUST00000238847.2
CDS CAA 72 bp	CGGGCAGTGGTCCAGTCAACGAGTAAGCACAGGCAGTaGCAAGTATCTCCACTCTGGATCTCCCAAGATCCA	+
Preference number: 6 (lower is better) Translates to: RAVVQSTSKHRQ*QVSPLWISQDP Trigger: TGGATCTTGGGAGATCCAGAGTGGAGATACTTGCAACTGCCTGTGCTTACTCGTTGACTGGACCACTGCCCG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023329.7 ENSMUST00000238847.2
CDS CCA 72 bp	AAGGGAACAAGTTGTAGTCTTCATCCTATTCAAAGTTaGCATCCTGGGGCAGAATCTCAGGAAAGGTTCCAG	+
Preference number: 6 (lower is better) Translates to: KGTSCSLHPIQS*HPGAESQERFQ Trigger: CTGGAACCTTTCCTGAGATTCTGCCCCAGGATGCCAACTTTGAATAGGATGAAGACTACAACTTGTTCCCTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023329.7