Pregenerated sensors for RETN (Mus musculus)
Ensembl gene IDs: ENSMUSG00000012705Ensembl transcript IDs: ENSMUST00000012849.15, ENSMUST00000169234.3
Found 56 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | TGTGTGCACACGTGGTACTCAAGTGCCTCAGTGCCCATGTGGAAGTaGGAAGACAACCTGGACTCTCTCCTTCCACCATGTAGTTTCCAG | + |
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Preference number: 1 (lower is better) Translates to: CVHTWYSSASVPMWK*EDNLDSLLPPCSFQ Trigger: CTGGAAACTACATGGTGGAAGGAGAGAGTCCAGGTTGTCTTCCCACTTCCACATGGGCACTGAGGCACTTGAGTACCACGTGTGCACACA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000169234.3 |
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| 3UTR TCA 90 bp | CAGTCCTGCCAAGGTCCAGTCTCCTCTGTGATGGTGACTATCATTTaGGGCCAGCCTGGACTATATGAGAGTCTCAAAGAGGAAGGGGAA | + |
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Preference number: 1 (lower is better) Translates to: QSCQGPVSSVMVTII*GQPGLYESLKEEGE Trigger: TTCCCCTTCCTCTTTGAGACTCTCATATAGTCCAGGCTGGCCTCAAATGATAGTCACCATCACAGAGGAGACTGGACCTTGGCAGGACTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000169234.3 |
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| 3UTR CCA 90 bp | CTTCCACCATGTAGTTTCCAGGAATCAAGCCCTGATCATCAGCCTTaGCAGCAGCATCTTTACCCACTGAATCATCTCACCAGCCCTCAT | + |
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Preference number: 1 (lower is better) Translates to: LPPCSFQESSPDHQP*QQHLYPLNHLTSPH Trigger: ATGAGGGCTGGTGAGATGATTCAGTGGGTAAAGATGCTGCTGCCAAGGCTGATGATCAGGGCTTGATTCCTGGAAACTACATGGTGGAAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000169234.3 |
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| 3UTR GCA 90 bp | TTCCCACACACACCCTTCTCCACTAAAGAAGTCACACAAGGCCCATaGCCACTTCGCCATCCATCTTCATCATCACCATCTTCTCATTCT | + |
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Preference number: 1 (lower is better) Translates to: FPHTPFSTKEVTQGP*PLRHPSSSSPSSHS Trigger: AGAATGAGAAGATGGTGATGATGAAGATGGATGGCGAAGTGGGCATGGGCCTTGTGTGACTTCTTTAGTGGAGAAGGGTGTGTGTGGGAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000169234.3 |
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| 3UTR TCA 90 bp | TGTTTTATTTTTAAGTATGTGTGCTTGTGTGTGGATTCGCGCACGTaGGTGCAGGTGCCTGTAGAGACCGGAGGACATCAGACATCTCTG | + |
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Preference number: 1 (lower is better) Translates to: CFIFKYVCLCVDSRT*VQVPVETGGHQTSL Trigger: CAGAGATGTCTGATGTCCTCCGGTCTCTACAGGCACCTGCACTCACGTGCGCGAATCCACACACAAGCACACATACTTAAAAATAAAACA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000012849.15 |
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| 3UTR CCA 90 bp | TATTGCTTCATTCATTCACTCTTTCATTCACTGTGTGTGCACACGTaGTACTCAAGTGCCTCAGTGCCCATGTGGAAGTGGGAAGACAAC | + |
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Preference number: 1 (lower is better) Translates to: YCFIHSLFHSLCVHT*YSSASVPMWKWEDN Trigger: GTTGTCTTCCCACTTCCACATGGGCACTGAGGCACTTGAGTACCACGTGTGCACACACAGTGAATGAAAGAGTGAATGAATGAAGCAATA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000169234.3 |
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| 3UTR TCA 90 bp | GTGCCTCTGGTTGAAAATAGGTATTCGACATCATATCCACAGAGGTaGAAAGTGAACTTGAGAGCTATGGAACCTCAGTCCTGCCAAGGT | + |
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Preference number: 1 (lower is better) Translates to: VPLVENRYSTSYPQR*KVNLRAMEPQSCQG Trigger: ACCTTGGCAGGACTGAGGTTCCATAGCTCTCAAGTTCACTTTTCACCTCTGTGGATATGATGTCGAATACCTATTTTCAACCAGAGGCAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000169234.3 |
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| 3UTR-3UTR CCA 90 bp | GAGTACACTGTAGCTATCTTCAGACACACCAGAAGGGGGCATAGGATGGTTGTGAGCTACAGGAACGGGTaGCTGTGCTGGAAACCACGC | + |
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Preference number: 2 (lower is better) Translates to: EYTVAIFRHTRRGHRMVVSYRNG*LCWKPR Trigger: GCGTGGTTTCCAGCACAGCCACCCGTTCCTGTAGCT...CACAACCATCCTATGCCCCCTTCTGGTGTGTCTGAAGATAGCTACAGTGTACTC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000012849.15 |
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| 3UTR-3UTR TCA 90 bp | GAGTACACTGTAGCTATCTTCAGACACACCAGAAGGGGGCATAGGATGGTTGTGGTGGTTGCTGGGAATTaGACTCAGGACCTCAGGAAG | + |
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Preference number: 2 (lower is better) Translates to: EYTVAIFRHTRRGHRMVVVVAGN*TQDLRK Trigger: CTTCCTGAGGTCCTGAGTTCAATTCCCAGCAACCAC...CACAACCATCCTATGCCCCCTTCTGGTGTGTCTGAAGATAGCTACAGTGTACTC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000012849.15 |
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| 3UTR-3UTR CCA 90 bp | GAGTACACTGTAGCTATCTTCAGACACACCAGAAGGGGGCATAGGATGGTTGTGGACATCAGACATCTCTaGAGCTACAGGAACGGGTGG | + |
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Preference number: 2 (lower is better) Translates to: EYTVAIFRHTRRGHRMVVDIRHL*SYRNGW Trigger: CCACCCGTTCCTGTAGCTCCAGAGATGTCTGATGTC...CACAACCATCCTATGCCCCCTTCTGGTGTGTCTGAAGATAGCTACAGTGTACTC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000012849.15 |
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| 3UTR-3UTR TCA 90 bp | AGTGCCTCAGTGCCCATGTGGAAGTGGGAAGACAACCTGGACTCTCTCCTTCCATCATATCCACAGAGGTaGAAAGTGAACTTGAGAGCT | + |
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Preference number: 2 (lower is better) Translates to: SASVPMWKWEDNLDSLLPSYPQR*KVNLRA Trigger: AGCTCTCAAGTTCACTTTTCACCTCTGTGGATATGA...TGGAAGGAGAGAGTCCAGGTTGTCTTCCCACTTCCACATGGGCACTGAGGCACT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000169234.3 |
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| 3UTR-3UTR TCA 90 bp | GAGTACACTGTAGCTATCTTCAGACACACCAGAAGGGGGCATAGGATGGTTGTGCTGGAATTAAAAGTATaGGACCACCACATCCAGCCT | + |
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Preference number: 2 (lower is better) Translates to: EYTVAIFRHTRRGHRMVVLELKV*DHHIQP Trigger: AGGCTGGATGTGGTGGTCTCATACTTTTAATTCCAG...CACAACCATCCTATGCCCCCTTCTGGTGTGTCTGAAGATAGCTACAGTGTACTC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000012849.15 |
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| 3UTR-3UTR TCA 90 bp | GAATCATCTCACCAGCCCTCATTCTATAGACAGTTACTAGCACCCAGGCTATACCCAGCCTGGACTATATaGGAGTCTCAAAGAGGAAGG | + |
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Preference number: 2 (lower is better) Translates to: ESSHQPSFYRQLLAPRLYPAWTI*ESQRGR Trigger: CCTTCCTCTTTGAGACTCTCATATAGTCCAGGCTGG...GTATAGCCTGGGTGCTAGTAACTGTCTATAGAATGAGGGCTGGTGAGATGATTC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000169234.3 |
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| 3UTR-3UTR GCA 90 bp | ACACGTGGTACTCAAGTGCCTCAGTGCCCATGTGGAAGTGGGAAGACAACCTGGAAATTCACAACACTGTaGAACATTTCCCACACAATT | + |
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Preference number: 2 (lower is better) Translates to: TRGTQVPQCPCGSGKTTWKFTTL*NISHTI Trigger: AATTGTGTGGGAAATGTTGCACAGTGTTGTGAATTT...CCAGGTTGTCTTCCCACTTCCACATGGGCACTGAGGCACTTGAGTACCACGTGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000169234.3 |
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| 3UTR-3UTR GCA 90 bp | GAGTACACTGTAGCTATCTTCAGACACACCAGAAGGGGGCATAGGATGGTTGTGATTTTTAAGTATGTGTaGTTGTGTGTGGATTCGCGC | + |
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Preference number: 2 (lower is better) Translates to: EYTVAIFRHTRRGHRMVVIFKYV*LCVDSR Trigger: GCGCGAATCCACACACAAGCACACATACTTAAAAAT...CACAACCATCCTATGCCCCCTTCTGGTGTGTCTGAAGATAGCTACAGTGTACTC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000012849.15 |
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| 3UTR TCA 72 bp | TTTAAGTATGTGTGCTTGTGTGTGGATTCGCGCACGTaGGTGCAGGTGCCTGTAGAGACCGGAGGACATCAG | + |
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Preference number: 3 (lower is better) Translates to: FKYVCLCVDSRT*VQVPVETGGHQ Trigger: CTGATGTCCTCCGGTCTCTACAGGCACCTGCACTCACGTGCGCGAATCCACACACAAGCACACATACTTAAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000012849.15 |
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| 3UTR CCA 72 bp | GTGCCTCAGTGCCCATGTGGAAGTGGGAAGACAACCTaGACTCTCTCCTTCCACCATGTAGTTTCCAGGAAT | + |
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Preference number: 3 (lower is better) Translates to: VPQCPCGSGKTT*TLSFHHVVSRN Trigger: ATTCCTGGAAACTACATGGTGGAAGGAGAGAGTCCAGGTTGTCTTCCCACTTCCACATGGGCACTGAGGCAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000169234.3 |
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| 3UTR GCA 72 bp | CTTTCATTCACTGTGTGTGCACACGTGGTACTCAAGTaGCTCAGTGCCCATGTGGAAGTGGGAAGACAACCT | + |
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Preference number: 3 (lower is better) Translates to: LSFTVCAHVVLK*LSAHVEVGRQP Trigger: AGGTTGTCTTCCCACTTCCACATGGGCACTGAGGCACTTGAGTACCACGTGTGCACACACAGTGAATGAAAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000169234.3 |
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| 3UTR-3UTR CAA 90 bp | CTCCTTCCACCATGTAGTTTCCAGGAATCAAGCCCTGATCATCAGCCTTGGCAGGATGGTGACTATCATTaGAGGCCAGCCTGGACTATA | + |
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Preference number: 3 (lower is better) Translates to: LLPPCSFQESSPDHQPWQDGDYH*RPAWTI Trigger: TATAGTCCAGGCTGGCCTCAAATGATAGTCACCATC...CTGCCAAGGCTGATGATCAGGGCTTGATTCCTGGAAACTACATGGTGGAAGGAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000169234.3 |
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| 3UTR TCA 72 bp | TCTCCAGCCCGACATAGATTACTGATGGCTTGGGATTaGACCTTTAGAAGGGCAGTCAGTGCTGCTAACCAC | + |
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Preference number: 3 (lower is better) Translates to: SPARHRLLMAWD*TFRRAVSAANH Trigger: GTGGTTAGCAGCACTGACTGCCCTTCTAAAGGTTCAATCCCAAGCCATCAGTAATCTATGTCGGGCTGGAGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000012849.15 |
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| 3UTR-3UTR CAA 90 bp | GACTCTCTCCTTCCACCATGTAGTTTCCAGGAATCAAGCCCTGATCATCAGCCTCCTGGGTGCCTCTGGTaGAAAATAGGTATTCGACAT | + |
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Preference number: 3 (lower is better) Translates to: DSLLPPCSFQESSPDHQPPGCLW*KIGIRH Trigger: ATGTCGAATACCTATTTTCAACCAGAGGCACCCAGG...AGGCTGATGATCAGGGCTTGATTCCTGGAAACTACATGGTGGAAGGAGAGAGTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000169234.3 |
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| 3UTR CCA 72 bp | TGTAGTTTCCAGGAATCAAGCCCTGATCATCAGCCTTaGCAGCAGCATCTTTACCCACTGAATCATCTCACC | + |
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Preference number: 3 (lower is better) Translates to: CSFQESSPDHQP*QQHLYPLNHLT Trigger: GGTGAGATGATTCAGTGGGTAAAGATGCTGCTGCCAAGGCTGATGATCAGGGCTTGATTCCTGGAAACTACA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000169234.3 |
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| 3UTR CCA 72 bp | ATTCATTCACTCTTTCATTCACTGTGTGTGCACACGTaGTACTCAAGTGCCTCAGTGCCCATGTGGAAGTGG | + |
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Preference number: 3 (lower is better) Translates to: IHSLFHSLCVHT*YSSASVPMWKW Trigger: CCACTTCCACATGGGCACTGAGGCACTTGAGTACCACGTGTGCACACACAGTGAATGAAAGAGTGAATGAAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000169234.3 |
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| 3UTR GCA 72 bp | AGGAGTGATGGACAAGTAGTAAAATTCACAACACTGTaGAACATTTCCCACACAATTCCCACACACACCCTT | + |
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Preference number: 3 (lower is better) Translates to: RSDGQVVKFTTL*NISHTIPTHTL Trigger: AAGGGTGTGTGTGGGAATTGTGTGGGAAATGTTGCACAGTGTTGTGAATTTTACTACTTGTCCATCACTCCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000169234.3 |
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| CDS-3UTR GCA 90 bp | CTTCATTTCCAGACCCTCAGCTTAGACCTGCCCCTGCCTCCTCCCCGTCCCTGTTGGGACACAGTGGCATaGTGGAGCCCAGCAGTTCAG | + |
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Preference number: 4 (lower is better) Translates to: LHFQTLSLDLPLPPPRPCWDTVA*WSPAVQ Trigger: CTGAACTGCTGGGCTCCAGCATGCCACTGTGTCCCA...ACAGGGACGGGGAGGAGGCAGGGGCAGGTCTAAGCTGAGGGTCTGGAAATGAAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000169234.3 |
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| CDS-3UTR CCA 90 bp | GAGTACACTGTAGCTATCTTCAGACACACCAGAAGGGGGCATAGGATGGTTGTGGACTGCTGTGCCTTCTaGGCAGGAGGCCAACTTCCC | + |
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Preference number: 4 (lower is better) Translates to: EYTVAIFRHTRRGHRMVVDCCAF*AGGQLP Trigger: GGGAAGTTGGCCTCCTGCCCAGAAGGCACAGCAGTC...CACAACCATCCTATGCCCCCTTCTGGTGTGTCTGAAGATAGCTACAGTGTACTC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000012849.15 |
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| CDS-3UTR CCA 90 bp | TCCACAGAGGTGAAAAGTGAACTTGAGAGCTATGGAACCTCAGTCCTGCCAAGGGACTGCTGTGCCTTCTaGGCAGGAGGCCAACTTCCC | + |
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Preference number: 4 (lower is better) Translates to: STEVKSELESYGTSVLPRDCCAF*AGGQLP Trigger: GGGAAGTTGGCCTCCTGCCCAGAAGGCACAGCAGTC...CCTTGGCAGGACTGAGGTTCCATAGCTCTCAAGTTCACTTTTCACCTCTGTGGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000169234.3 |
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| CDS-3UTR GCA 90 bp | GAGTACACTGTAGCTATCTTCAGACACACCAGAAGGGGGCATAGGATGGTTGTGTGGGACACAGTGGCATaGTGGAGCCCAGCAGTTCAG | + |
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Preference number: 4 (lower is better) Translates to: EYTVAIFRHTRRGHRMVVWDTVA*WSPAVQ Trigger: CTGAACTGCTGGGCTCCAGCATGCCACTGTGTCCCA...CACAACCATCCTATGCCCCCTTCTGGTGTGTCTGAAGATAGCTACAGTGTACTC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000012849.15 |
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| CDS-3UTR GCA 90 bp | GAGTACACTGTAGCTATCTTCAGACACACCAGAAGGGGGCATAGGATGGTTGTGAGCTCAAGACTGCTGTaGCTTCTGGGCAGGAGGCCA | + |
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Preference number: 4 (lower is better) Translates to: EYTVAIFRHTRRGHRMVVSSRLL*LLGRRP Trigger: TGGCCTCCTGCCCAGAAGGCACAGCAGTCTTGAGCT...CACAACCATCCTATGCCCCCTTCTGGTGTGTCTGAAGATAGCTACAGTGTACTC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000012849.15 |
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| CDS-3UTR GCA 90 bp | GAGTACACTGTAGCTATCTTCAGACACACCAGAAGGGGGCATAGGATGGTTGTGGGAGCAGCTCAAGACTaGTGTGCCTTCTGGGCAGGA | + |
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Preference number: 4 (lower is better) Translates to: EYTVAIFRHTRRGHRMVVGAAQD*CAFWAG Trigger: TCCTGCCCAGAAGGCACAGCAGTCTTGAGCTGCTCC...CACAACCATCCTATGCCCCCTTCTGGTGTGTCTGAAGATAGCTACAGTGTACTC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000012849.15 |
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| CDS-3UTR CCA 90 bp | GAGTACACTGTAGCTATCTTCAGACACACCAGAAGGGGGCATAGGATGGTTGTGATCGATGGGACACAGTaGCATGCTGGAGCCCAGCAG | + |
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Preference number: 4 (lower is better) Translates to: EYTVAIFRHTRRGHRMVVIDGTQ*HAGAQQ Trigger: CTGCTGGGCTCCAGCATGCCACTGTGTCCCATCGAT...CACAACCATCCTATGCCCCCTTCTGGTGTGTCTGAAGATAGCTACAGTGTACTC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000012849.15 |
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| CDS-3UTR TCA 90 bp | ACACGTGGTACTCAAGTGCCTCAGTGCCCATGTGGAAGTGGGAAGACAACCTGGCTTGCACACTGGCAGTaGCACACTTTTTCTTCACGA | + |
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Preference number: 4 (lower is better) Translates to: TRGTQVPQCPCGSGKTTWLAHWQ*HTFSSR Trigger: TCGTGAAGAAAAAGTGTGTCACTGCCAGTGTGCAAG...CCAGGTTGTCTTCCCACTTCCACATGGGCACTGAGGCACTTGAGTACCACGTGT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000169234.3 |
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| CDS-3UTR GCA 90 bp | TTGGCAGCAGCATCTTTACCCACTGAATCATCTCACCAGCCCTCATTCTATAGAAGCTCAAGACTGCTGTaGCTTCTGGGCAGGAGGCCA | + |
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Preference number: 4 (lower is better) Translates to: LAAASLPTESSHQPSFYRSSRLL*LLGRRP Trigger: TGGCCTCCTGCCCAGAAGGCACAGCAGTCTTGAGCT...TCTATAGAATGAGGGCTGGTGAGATGATTCAGTGGGTAAAGATGCTGCTGCCAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000169234.3 |
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| CDS-3UTR CCA 90 bp | AATTCACAACACTGTGCAACATTTCCCACACAATTCCCACACACACCCTTCTCCATCGATGGGACACAGTaGCATGCTGGAGCCCAGCAG | + |
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Preference number: 4 (lower is better) Translates to: NSQHCATFPTQFPHTPFSIDGTQ*HAGAQQ Trigger: CTGCTGGGCTCCAGCATGCCACTGTGTCCCATCGAT...GGAGAAGGGTGTGTGTGGGAATTGTGTGGGAAATGTTGCACAGTGTTGTGAATT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000169234.3 |
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| CDS-3UTR CCA 90 bp | GAGTACACTGTAGCTATCTTCAGACACACCAGAAGGGGGCATAGGATGGTTGTGAGGCCAACTTCCCTCTaGAGGAGACTGTCCAGCAAT | + |
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Preference number: 4 (lower is better) Translates to: EYTVAIFRHTRRGHRMVVRPTSL*RRLSSN Trigger: ATTGCTGGACAGTCTCCTCCAGAGGGAAGTTGGCCT...CACAACCATCCTATGCCCCCTTCTGGTGTGTCTGAAGATAGCTACAGTGTACTC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000012849.15 |
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| CDS-3UTR GCA 90 bp | GAGTACACTGTAGCTATCTTCAGACACACCAGAAGGGGGCATAGGATGGTTGTGTGTCCAGTCTATCCTTaGACACTGGCAGTGACACAC | + |
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Preference number: 4 (lower is better) Translates to: EYTVAIFRHTRRGHRMVVCPVYP*TLAVTH Trigger: GTGTGTCACTGCCAGTGTGCAAGGATAGACTGGACA...CACAACCATCCTATGCCCCCTTCTGGTGTGTCTGAAGATAGCTACAGTGTACTC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000012849.15 |
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| 3UTR CAA 72 bp | TGCCCCAGGTGGTGTAAATGCCCTGGGTGCCTCTGGTaGAAAATAGGTATTCGACATCATATCCACAGAGGT | + |
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Preference number: 4 (lower is better) Translates to: CPRWCKCPGCLW*KIGIRHHIHRG Trigger: ACCTCTGTGGATATGATGTCGAATACCTATTTTCAACCAGAGGCACCCAGGGCATTTACACCACCTGGGGCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000169234.3 |
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| CDS-3UTR TCA 90 bp | GAGTACACTGTAGCTATCTTCAGACACACCAGAAGGGGGCATAGGATGGTTGTGCTTGCACACTGGCAGTaGCACACTTTTTCTTCACGA | + |
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Preference number: 4 (lower is better) Translates to: EYTVAIFRHTRRGHRMVVLAHWQ*HTFSSR Trigger: TCGTGAAGAAAAAGTGTGTCACTGCCAGTGTGCAAG...CACAACCATCCTATGCCCCCTTCTGGTGTGTCTGAAGATAGCTACAGTGTACTC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000012849.15 |
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| CDS-3UTR GCA 90 bp | AGTAAAATTCACAACACTGTGCAACATTTCCCACACAATTCCCACACACACCCTTGTCCAGTCTATCCTTaGACACTGGCAGTGACACAC | + |
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Preference number: 4 (lower is better) Translates to: SKIHNTVQHFPHNSHTHPCPVYP*TLAVTH Trigger: GTGTGTCACTGCCAGTGTGCAAGGATAGACTGGACA...AGGGTGTGTGTGGGAATTGTGTGGGAAATGTTGCACAGTGTTGTGAATTTTACT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000169234.3 |
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| CDS-3UTR CCA 90 bp | GAGTACACTGTAGCTATCTTCAGACACACCAGAAGGGGGCATAGGATGGTTGTGGTTCTTTATTGCATTTaGAAACAGGGAGTTGAAGTC | + |
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Preference number: 4 (lower is better) Translates to: EYTVAIFRHTRRGHRMVVVLYCI*KQGVEV Trigger: GACTTCAACTCCCTGTTTCCAAATGCAATAAAGAAC...CACAACCATCCTATGCCCCCTTCTGGTGTGTCTGAAGATAGCTACAGTGTACTC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000012849.15 |
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| CDS-3UTR CCA 90 bp | GAATCATCTCACCAGCCCTCATTCTATAGACAGTTACTAGCACCCAGGCTATACGTTCTTTATTGCATTTaGAAACAGGGAGTTGAAGTC | + |
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Preference number: 4 (lower is better) Translates to: ESSHQPSFYRQLLAPRLYVLYCI*KQGVEV Trigger: GACTTCAACTCCCTGTTTCCAAATGCAATAAAGAAC...GTATAGCCTGGGTGCTAGTAACTGTCTATAGAATGAGGGCTGGTGAGATGATTC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000169234.3 |
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| CDS GCA 90 bp | AATGTCCCACGAGCCACAGGCAGAGCCACAGGAGCAGCTCAAGACTaGTGTGCCTTCTGGGCAGGAGGCCAACTTCCCTCTGGAGGAGAC | + |
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Preference number: 5 (lower is better) Translates to: NVPRATGRATGAAQD*CAFWAGGQLPSGGD Trigger: GTCTCCTCCAGAGGGAAGTTGGCCTCCTGCCCAGAAGGCACAGCAGTCTTGAGCTGCTCCTGTGGCTCTGCCTGTGGCTCGTGGGACATT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000012849.15 ENSMUST00000169234.3 |
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| CDS TCA 90 bp | TTACAGCAGCGGGCTGCTGTCCAGTCTATCCTTGCACACTGGCAGTaGCACACTTTTTCTTCACGAATGTCCCACGAGCCACAGGCAGAG | + |
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Preference number: 5 (lower is better) Translates to: LQQRAAVQSILAHWQ*HTFSSRMSHEPQAE Trigger: CTCTGCCTGTGGCTCGTGGGACATTCGTGAAGAAAAAGTGTGTCACTGCCAGTGTGCAAGGATAGACTGGACAGCAGCCCGCTGCTGTAA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000012849.15 ENSMUST00000169234.3 |
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| CDS GCA 90 bp | AGCGACCTGCAGCTTACAGCAGCGGGCTGCTGTCCAGTCTATCCTTaGACACTGGCAGTGACACACTTTTTCTTCACGAATGTCCCACGA | + |
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Preference number: 5 (lower is better) Translates to: SDLQLTAAGCCPVYP*TLAVTHFFFTNVPR Trigger: TCGTGGGACATTCGTGAAGAAAAAGTGTGTCACTGCCAGTGTGCAAGGATAGACTGGACAGCAGCCCGCTGCTGTAAGCTGCAGGTCGCT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000012849.15 ENSMUST00000169234.3 |
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| CDS CCA 90 bp | AGCTCAAGACTGCTGTGCCTTCTGGGCAGGAGGCCAACTTCCCTCTaGAGGAGACTGTCCAGCAATTTAAGCCAATGTTCTTTATTGCAT | + |
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Preference number: 5 (lower is better) Translates to: SSRLLCLLGRRPTSL*RRLSSNLSQCSLLH Trigger: ATGCAATAAAGAACATTGGCTTAAATTGCTGGACAGTCTCCTCCAGAGGGAAGTTGGCCTCCTGCCCAGAAGGCACAGCAGTCTTGAGCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000012849.15 ENSMUST00000169234.3 |
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| CDS-3UTR CAA 90 bp | TTCCCACACACACCCTTCTCCACTAAAGAAGTCACACAAGGCCCATGCCCACTTCAGGGAGTTGAAGTCTaGTTTGATCTTCTTGTCGAT | + |
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Preference number: 5 (lower is better) Translates to: FPHTPFSTKEVTQGPCPLQGVEV*FDLLVD Trigger: ATCGACAAGAAGATCAAACAAGACTTCAACTCCCTG...AAGTGGGCATGGGCCTTGTGTGACTTCTTTAGTGGAGAAGGGTGTGTGTGGGAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000169234.3 |
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| CDS-3UTR CAA 90 bp | GAGTACACTGTAGCTATCTTCAGACACACCAGAAGGGGGCATAGGATGGTTGTGCAGGGAGTTGAAGTCTaGTTTGATCTTCTTGTCGAT | + |
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Preference number: 5 (lower is better) Translates to: EYTVAIFRHTRRGHRMVVQGVEV*FDLLVD Trigger: ATCGACAAGAAGATCAAACAAGACTTCAACTCCCTG...CACAACCATCCTATGCCCCCTTCTGGTGTGTCTGAAGATAGCTACAGTGTACTC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000012849.15 |
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| CDS-3UTR CAA 90 bp | GAGTACACTGTAGCTATCTTCAGACACACCAGAAGGGGGCATAGGATGGTTGTGAGCCAATGTTCTTTATaGCATTTGGAAACAGGGAGT | + |
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Preference number: 5 (lower is better) Translates to: EYTVAIFRHTRRGHRMVVSQCSL*HLETGS Trigger: ACTCCCTGTTTCCAAATGCAATAAAGAACATTGGCT...CACAACCATCCTATGCCCCCTTCTGGTGTGTCTGAAGATAGCTACAGTGTACTC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000012849.15 |
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| CDS-3UTR CAA 90 bp | CATTCATTCACTCTTTCATTCACTGTGTGTGCACACGTGGTACTCAAGTGCCTCAGCCAATGTTCTTTATaGCATTTGGAAACAGGGAGT | + |
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Preference number: 5 (lower is better) Translates to: HSFTLSFTVCAHVVLKCLSQCSL*HLETGS Trigger: ACTCCCTGTTTCCAAATGCAATAAAGAACATTGGCT...GAGGCACTTGAGTACCACGTGTGCACACACAGTGAATGAAAGAGTGAATGAATG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000169234.3 |
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| CDS CCA 72 bp | AGAGCCACAGGAGCAGCTCAAGACTGCTGTGCCTTCTaGGCAGGAGGCCAACTTCCCTCTGGAGGAGACTGT | + |
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Preference number: 6 (lower is better) Translates to: RATGAAQDCCAF*AGGQLPSGGDC Trigger: ACAGTCTCCTCCAGAGGGAAGTTGGCCTCCTGCCCAGAAGGCACAGCAGTCTTGAGCTGCTCCTGTGGCTCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000012849.15 ENSMUST00000169234.3 |
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| CDS CAA 90 bp | AAGCGACCTGCAGCTTACAGCAGCGGGCTGCTGTCCAGTCTATCCTaGCACACTGGCAGTGACACACTTTTTCTTCACGAATGTCCCACG | + |
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Preference number: 6 (lower is better) Translates to: KRPAAYSSGLLSSLS*HTGSDTLFLHECPT Trigger: CGTGGGACATTCGTGAAGAAAAAGTGTGTCACTGCCAGTGTGCAAGGATAGACTGGACAGCAGCCCGCTGCTGTAAGCTGCAGGTCGCTT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000012849.15 ENSMUST00000169234.3 |
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| CDS TCA 72 bp | CGGGCTGCTGTCCAGTCTATCCTTGCACACTGGCAGTaGCACACTTTTTCTTCACGAATGTCCCACGAGCCA | + |
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Preference number: 6 (lower is better) Translates to: RAAVQSILAHWQ*HTFSSRMSHEP Trigger: TGGCTCGTGGGACATTCGTGAAGAAAAAGTGTGTCACTGCCAGTGTGCAAGGATAGACTGGACAGCAGCCCG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000012849.15 ENSMUST00000169234.3 |
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| CDS CCA 72 bp | GATCTTCTTGTCGATGGCTTCATCGATGGGACACAGTaGCATGCTGGAGCCCAGCAGTTCAGGGACAAGGAA | + |
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Preference number: 6 (lower is better) Translates to: DLLVDGFIDGTQ*HAGAQQFRDKE Trigger: TTCCTTGTCCCTGAACTGCTGGGCTCCAGCATGCCACTGTGTCCCATCGATGAAGCCATCGACAAGAAGATC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000012849.15 ENSMUST00000169234.3 |
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| CDS CCA 72 bp | CTGCTGTGCCTTCTGGGCAGGAGGCCAACTTCCCTCTaGAGGAGACTGTCCAGCAATTTAAGCCAATGTTCT | + |
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Preference number: 6 (lower is better) Translates to: LLCLLGRRPTSL*RRLSSNLSQCS Trigger: AGAACATTGGCTTAAATTGCTGGACAGTCTCCTCCAGAGGGAAGTTGGCCTCCTGCCCAGAAGGCACAGCAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000012849.15 ENSMUST00000169234.3 |
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| CDS GCA 72 bp | TCTTGTCGATGGCTTCATCGATGGGACACAGTGGCATaGTGGAGCCCAGCAGTTCAGGGACAAGGAAGAAAA | + |
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Preference number: 6 (lower is better) Translates to: SCRWLHRWDTVA*WSPAVQGQGRK Trigger: TTTTCTTCCTTGTCCCTGAACTGCTGGGCTCCAGCATGCCACTGTGTCCCATCGATGAAGCCATCGACAAGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000012849.15 ENSMUST00000169234.3 |
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| CDS CAA 90 bp | CCAATGTTCTTTATTGCATTTGGAAACAGGGAGTTGAAGTCTTGTTaGATCTTCTTGTCGATGGCTTCATCGATGGGACACAGTGGCATG | + |
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Preference number: 6 (lower is better) Translates to: PMFFIAFGNRELKSC*IFLSMASSMGHSGM Trigger: CATGCCACTGTGTCCCATCGATGAAGCCATCGACAAGAAGATCAAACAAGACTTCAACTCCCTGTTTCCAAATGCAATAAAGAACATTGG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000012849.15 ENSMUST00000169234.3 |
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