RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for RET (Mus musculus)

Ensembl gene IDs: ENSMUSG00000030110

Ensembl transcript IDs: ENSMUST00000032201.8, ENSMUST00000088790.9

Found 365 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp TCCCCAAGCAGAGGGTGGGCACACTCTTTGGTGGGTAGGGTGTACTaGAGACTGGCTTGCTGGGGGTGCAGAATTTGTGGCTCAAGGCCT +
Preference number: 1 (lower is better)
Translates to: SPSRGWAHSLVGRVY*RLACWGCRICGSRP
Trigger: AGGCCTTGAGCCACAAATTCTGCACCCCCAGCAAGCCAGTCTGCAGTACACCCTACCCACCAAAGAGTGTGCCCACCCTCTGCTTGGGGA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000032201.8
3UTR CCA 90 bp CAGCCCGGAGGCTCCCTTCTCCCCTCCAGCCCTAGTGGACCCGGGTaGATGCAACTACCCAGTCCTATGCTAGGCTTTCATTCTAGACAA +
Preference number: 1 (lower is better)
Translates to: QPGGSLLPSSPSGPG*MQLPSPMLGFHSRQ
Trigger: TTGTCTAGAATGAAAGCCTAGCATAGGACTGGGTAGTTGCATCCACCCGGGTCCACTAGGGCTGGAGGGGAGAAGGGAGCCTCCGGGCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000032201.8
3UTR CCA 90 bp CCAGGGATTAAAACAAGACAGACCCACCTGTCCCCAAGCAGAGGGTaGGCACACTCTTTGGTGGGTAGGGTGTACTGCAGACTGGCTTGC +
Preference number: 1 (lower is better)
Translates to: PGIKTRQTHLSPSRG*AHSLVGRVYCRLAC
Trigger: GCAAGCCAGTCTGCAGTACACCCTACCCACCAAAGAGTGTGCCCACCCTCTGCTTGGGGACAGGTGGGTCTGTCTTGTTTTAATCCCTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000032201.8
3UTR GCA 90 bp TTTAGCACTGGCTTCGTGAGTGACAACATCATGATGGGGGTAGGGTaGAAAGGATGTGAAAGCAGCAGTCTGGTGTCTGCCCAGGGCCCA +
Preference number: 1 (lower is better)
Translates to: FSTGFVSDNIMMGVG*KGCESSSLVSAQGP
Trigger: TGGGCCCTGGGCAGACACCAGACTGCTGCTTTCACATCCTTTGCACCCTACCCCCATCATGATGTTGTCACTCACGAAGCCAGTGCTAAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000088790.9
3UTR GCA 90 bp AGAAAACAAGTCTGCCACCTAAGGCTGGTCTTGGCCAGTATGATGTaGACAAAGGGGCCGGTGGACTTGATGCTCTTGGCATGTTTCTTC +
Preference number: 1 (lower is better)
Translates to: RKQVCHLRLVLASMM*TKGPVDLMLLACFF
Trigger: GAAGAAACATGCCAAGAGCATCAAGTCCACCGGCCCCTTTGTGCACATCATACTGGCCAAGACCAGCCTTAGGTGGCAGACTTGTTTTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000032201.8
3UTR TCA 90 bp GCCAGGAAAATCAGACAGTTCAGGTACAATTTCTCATCCAAGTCATaGATGGCAGACCCCACACATGTGGACACAGAGCTCGTGGTGGCT +
Preference number: 1 (lower is better)
Translates to: ARKIRQFRYNFSSKS*MADPTHVDTELVVA
Trigger: AGCCACCACGAGCTCTGTGTCCACATGTGTGGGGTCTGCCATTCATGACTTGGATGAGAAATTGTACCTGAACTGTCTGATTTTCCTGGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000032201.8
3UTR TCA 90 bp GACCAAAACACGTACCATAGCAGCATAAAGGACGGCCGGAAGAGCTaGCCCATGTGCCTTTCACACAAGCTCTATAAGAGCCAAAACCTT +
Preference number: 1 (lower is better)
Translates to: DQNTYHSSIKDGRKS*PMCLSHKLYKSQNL
Trigger: AAGGTTTTGGCTCTTATAGAGCTTGTGTGAAAGGCACATGGGTCAGCTCTTCCGGCCGTCCTTTATGCTGCTATGGTACGTGTTTTGGTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000032201.8
3UTR TCA 90 bp CCAAAGAAACTTCCAAGAGCCACCCCTAAAGCCCTAGAGGAGTGCTaGGTGTCTGTGGCTACAACTGCCCATATAGAAAGACAAGAACCT +
Preference number: 1 (lower is better)
Translates to: PKKLPRATPKALEEC*VSVATTAHIERQEP
Trigger: AGGTTCTTGTCTTTCTATATGGGCAGTTGTAGCCACAGACACTCAGCACTCCTCTAGGGCTTTAGGGGTGGCTCTTGGAAGTTTCTTTGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000032201.8
3UTR CCA 90 bp GGAAAATCAGACAGTTCAGGTACAATTTCTCATCCAAGTCATGAATaGCAGACCCCACACATGTGGACACAGAGCTCGTGGTGGCTAGTG +
Preference number: 1 (lower is better)
Translates to: GKSDSSGTISHPSHE*QTPHMWTQSSWWLV
Trigger: CACTAGCCACCACGAGCTCTGTGTCCACATGTGTGGGGTCTGCCATTCATGACTTGGATGAGAAATTGTACCTGAACTGTCTGATTTTCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000032201.8
3UTR CCA 90 bp TCAAGTCTGAAGACCAGGCAGTGTTTTGGTAATGTGACCTTTTCATaGGAAGTGACAGTCCACAGACAGCCAAAGAAACTTCCAAGAGCC +
Preference number: 1 (lower is better)
Translates to: SSLKTRQCFGNVTFS*EVTVHRQPKKLPRA
Trigger: GGCTCTTGGAAGTTTCTTTGGCTGTCTGTGGACTGTCACTTCCCATGAAAAGGTCACATTACCAAAACACTGCCTGGTCTTCAGACTTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000032201.8
3UTR GCA 90 bp CAAGACAAAGAAGGAGTTTTGGCAAGAGCCGTATTTACTGTCCATTaGAAGGCCACAGCACCACAGACTATGTTCTTTCAGAAAGCATTG +
Preference number: 1 (lower is better)
Translates to: QDKEGVLARAVFTVH*KATAPQTMFFQKAL
Trigger: CAATGCTTTCTGAAAGAACATAGTCTGTGGTGCTGTGGCCTTGCAATGGACAGTAAATACGGCTCTTGCCAAAACTCCTTCTTTGTCTTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088790.9
3UTR CCA 90 bp ATGCAAAGTCAGATATTTACAAAGAAAAGGGTTCGGAGGAGGCTTTaGTGTCGGTGGGATCAGAAACACTCTTTAAAAAGCGTTACAGAG +
Preference number: 1 (lower is better)
Translates to: MQSQIFTKKRVRRRL*CRWDQKHSLKSVTE
Trigger: CTCTGTAACGCTTTTTAAAGAGTGTTTCTGATCCCACCGACACCAAAGCCTCCTCCGAACCCTTTTCTTTGTAAATATCTGACTTTGCAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000088790.9
3UTR CAA 90 bp AGGCTGGTCTTGGCCAGTATGATGTGCACAAAGGGGCCGGTGGACTaGATGCTCTTGGCATGTTTCTTCCCCCTTGGGAGTCCATTACCG +
Preference number: 2 (lower is better)
Translates to: RLVLASMMCTKGPVD*MLLACFFPLGSPLP
Trigger: CGGTAATGGACTCCCAAGGGGGAAGAAACATGCCAAGAGCATCAAGTCCACCGGCCCCTTTGTGCACATCATACTGGCCAAGACCAGCCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000032201.8
3UTR-3UTR CCA 90 bp AAGCAGCAGTCTGGTGTCTGCCCAGGGCCCACATGGTTTTCCCGCTGCCCCACAAGGCTTTGGTGTCGGTaGGATCAGAAACACTCTTTA +
Preference number: 2 (lower is better)
Translates to: KQQSGVCPGPTWFSRCPTRLWCR*DQKHSL
Trigger: TAAAGAGTGTTTCTGATCCCACCGACACCAAAGCCT...TGTGGGGCAGCGGGAAAACCATGTGGGCCCTGGGCAGACACCAGACTGCTGCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000088790.9
3UTR-3UTR CCA 90 bp GGGTGCAAAGGATGTGAAAGCAGCAGTCTGGTGTCTGCCCAGGGCCCACATGGTACACATAGCTGGAAGTaGGATTATGGTCGGCTTCCG +
Preference number: 2 (lower is better)
Translates to: GCKGCESSSLVSAQGPHGTHSWK*DYGRLP
Trigger: CGGAAGCCGACCATAATCCCACTTCCAGCTATGTGT...ACCATGTGGGCCCTGGGCAGACACCAGACTGCTGCTTTCACATCCTTTGCACCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088790.9
3UTR CAA 90 bp TTGGCCAGTATGATGTGCACAAAGGGGCCGGTGGACTTGATGCTCTaGGCATGTTTCTTCCCCCTTGGGAGTCCATTACCGTTCACAAAG +
Preference number: 2 (lower is better)
Translates to: LASMMCTKGPVDLML*ACFFPLGSPLPFTK
Trigger: CTTTGTGAACGGTAATGGACTCCCAAGGGGGAAGAAACATGCCAAGAGCATCAAGTCCACCGGCCCCTTTGTGCACATCATACTGGCCAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000032201.8
3UTR-3UTR TCA 90 bp AGAGCCGTATTTACTGTCCATTGCAAGGCCACAGCACCACAGACTATGTTCTTTTTTCCCTGGCAAAACTaGCTCCCTCCCCAGATCAGG +
Preference number: 2 (lower is better)
Translates to: RAVFTVHCKATAPQTMFFFPWQN*LPPQIR
Trigger: CCTGATCTGGGGAGGGAGTCAGTTTTGCCAGGGAAA...AAAGAACATAGTCTGTGGTGCTGTGGCCTTGCAATGGACAGTAAATACGGCTCT
50% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000088790.9
3UTR-3UTR GCA 90 bp TGTGACCTTTTCATGGGAAGTGACAGTCCACAGACAGCCAAAGAAACTTCCAAGCTGGCTTGCTGGGGGTaGAGAATTTGTGGCTCAAGG +
Preference number: 2 (lower is better)
Translates to: CDLFMGSDSPQTAKETSKLACWG*RICGSR
Trigger: CCTTGAGCCACAAATTCTGCACCCCCAGCAAGCCAG...CTTGGAAGTTTCTTTGGCTGTCTGTGGACTGTCACTTCCCATGAAAAGGTCACA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000032201.8
3UTR-3UTR CCA 90 bp CATGTGGGGTCACTTCTTTCCAGTTGCCTTGTATATAGCAAAGGCAACACCAAACAGACCCCACACATGTaGACACAGAGCTCGTGGTGG +
Preference number: 2 (lower is better)
Translates to: HVGSLLSSCLVYSKGNTKQTPHM*TQSSWW
Trigger: CCACCACGAGCTCTGTGTCCACATGTGTGGGGTCTG...TTTGGTGTTGCCTTTGCTATATACAAGGCAACTGGAAAGAAGTGACCCCACATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000032201.8
3UTR-3UTR CCA 90 bp AACCTTGTTCTCTCACCTCAGTCAGTGTCAGGGAAACATCTAATGCAACTAGATTCCCCAAGCAGAGGGTaGGCACACTCTTTGGTGGGT +
Preference number: 2 (lower is better)
Translates to: NLVLSPQSVSGKHLMQLDSPSRG*AHSLVG
Trigger: ACCCACCAAAGAGTGTGCCCACCCTCTGCTTGGGGA...ATCTAGTTGCATTAGATGTTTCCCTGACACTGACTGAGGTGAGAGAACAAGGTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000032201.8
3UTR-3UTR CCA 90 bp TTTTGGCAAGAGCCGTATTTACTGTCCATTGCAAGGCCACAGCACCACAGACTATACAGAGAGTTGGGATaGTGCAGAGAGGACAGCGTT +
Preference number: 2 (lower is better)
Translates to: FWQEPYLLSIARPQHHRLYRELG*CREDSV
Trigger: AACGCTGTCCTCTCTGCACCATCCCAACTCTCTGTA...TAGTCTGTGGTGCTGTGGCCTTGCAATGGACAGTAAATACGGCTCTTGCCAAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088790.9
3UTR-3UTR GCA 90 bp AGAGCTGACCCATGTGCCTTTCACACAAGCTCTATAAGAGCCAAAACCTTGTTCGCAGACCAACAGAGGTaGTACCCAATGCTAAAGGGA +
Preference number: 2 (lower is better)
Translates to: RADPCAFHTSSIRAKTLFADQQR*YPMLKG
Trigger: TCCCTTTAGCATTGGGTAGCACCTCTGTTGGTCTGC...GAACAAGGTTTTGGCTCTTATAGAGCTTGTGTGAAAGGCACATGGGTCAGCTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000032201.8
3UTR-3UTR GCA 90 bp AGACAAAGAAGGAGTTTTGGCAAGAGCCGTATTTACTGTCCATTGCAAGGCCACATGATGGGGGTAGGGTaGAAAGGATGTGAAAGCAGC +
Preference number: 2 (lower is better)
Translates to: RQRRSFGKSRIYCPLQGHMMGVG*KGCESS
Trigger: GCTGCTTTCACATCCTTTGCACCCTACCCCCATCAT...GTGGCCTTGCAATGGACAGTAAATACGGCTCTTGCCAAAACTCCTTCTTTGTCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000088790.9
3UTR-3UTR CCA 90 bp CTGTGTCATCGTAAGTTGCTGGGCTGTGTGGTAATGACACTTATTTTCACATCCAGCGTTACAGAGAGTTaGGATGGTGCAGAGAGGACA +
Preference number: 2 (lower is better)
Translates to: LCHRKLLGCVVMTLIFTSSVTES*DGAERT
Trigger: TGTCCTCTCTGCACCATCCCAACTCTCTGTAACGCT...GGATGTGAAAATAAGTGTCATTACCACACAGCCCAGCAACTTACGATGACACAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088790.9
3UTR-3UTR TCA 90 bp CAGTCAGTGTCAGGGAAACATCTAATGCAACTAGATGAACTGTCCTTCCCTTTGTTCTCATCCAAGTCATaGATGGCAGACCCCACACAT +
Preference number: 2 (lower is better)
Translates to: QSVSGKHLMQLDELSFPLFSSKS*MADPTH
Trigger: ATGTGTGGGGTCTGCCATTCATGACTTGGATGAGAA...CAAAGGGAAGGACAGTTCATCTAGTTGCATTAGATGTTTCCCTGACACTGACTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000032201.8
3UTR-3UTR GCA 90 bp TGTGACCTTTTCATGGGAAGTGACAGTCCACAGACAGCCAAAGAAACTTCCAAGTACAGAAAACAAGTCTaGCACCTAAGGCTGGTCTTG +
Preference number: 2 (lower is better)
Translates to: CDLFMGSDSPQTAKETSKYRKQV*HLRLVL
Trigger: CAAGACCAGCCTTAGGTGGCAGACTTGTTTTCTGTA...CTTGGAAGTTTCTTTGGCTGTCTGTGGACTGTCACTTCCCATGAAAAGGTCACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000032201.8
3UTR-3UTR CCA 90 bp CAGTCAGTGTCAGGGAAACATCTAATGCAACTAGATGAACTGTCCTTCCCTTTGATGTTTCTTCCCCCTTaGGAGTCCATTACCGTTCAC +
Preference number: 2 (lower is better)
Translates to: QSVSGKHLMQLDELSFPLMFLPP*ESITVH
Trigger: GTGAACGGTAATGGACTCCCAAGGGGGAAGAAACAT...CAAAGGGAAGGACAGTTCATCTAGTTGCATTAGATGTTTCCCTGACACTGACTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000032201.8
3UTR CAA 90 bp CCAAGACAAAGAAGGAGTTTTGGCAAGAGCCGTATTTACTGTCCATaGCAAGGCCACAGCACCACAGACTATGTTCTTTCAGAAAGCATT +
Preference number: 2 (lower is better)
Translates to: PRQRRSFGKSRIYCP*QGHSTTDYVLSESI
Trigger: AATGCTTTCTGAAAGAACATAGTCTGTGGTGCTGTGGCCTTGCAATGGACAGTAAATACGGCTCTTGCCAAAACTCCTTCTTTGTCTTGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088790.9
3UTR CAA 90 bp GATGCAAAGTCAGATATTTACAAAGAAAAGGGTTCGGAGGAGGCTTaGGTGTCGGTGGGATCAGAAACACTCTTTAAAAAGCGTTACAGA +
Preference number: 2 (lower is better)
Translates to: DAKSDIYKEKGSEEA*VSVGSETLFKKRYR
Trigger: TCTGTAACGCTTTTTAAAGAGTGTTTCTGATCCCACCGACACCAAAGCCTCCTCCGAACCCTTTTCTTTGTAAATATCTGACTTTGCATC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000088790.9
3UTR-3UTR TCA 90 bp CAGCCAGGAAAATCAGACAGTTCAGGTACAATTTCTCATCCAAGTCATGAATGGGGACCACCAGCTATTTaGAGTAAAACCATTTGGAAA +
Preference number: 2 (lower is better)
Translates to: QPGKSDSSGTISHPSHEWGPPAI*SKTIWK
Trigger: TTTCCAAATGGTTTTACTTCAAATAGCTGGTGGTCC...CCATTCATGACTTGGATGAGAAATTGTACCTGAACTGTCTGATTTTCCTGGCTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000032201.8
3UTR-3UTR GCA 90 bp AGAGCCGTATTTACTGTCCATTGCAAGGCCACAGCACCACAGACTATGTTCTTTTTAGAAAGACATAGCTaGAAAATGCCTGAATGTATG +
Preference number: 2 (lower is better)
Translates to: RAVFTVHCKATAPQTMFFLERHS*KMPECM
Trigger: CATACATTCAGGCATTTTGCAGCTATGTCTTTCTAA...AAAGAACATAGTCTGTGGTGCTGTGGCCTTGCAATGGACAGTAAATACGGCTCT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000088790.9
3UTR GCA 72 bp TCTGGTGTCTGCCCAGGGCCCACATGGTTTTCCCGCTaGCCCACACTGCACGGCTGTGGACACATAGCTGGA +
Preference number: 3 (lower is better)
Translates to: SGVCPGPTWFSR*PTLHGCGHIAG
Trigger: TCCAGCTATGTGTCCACAGCCGTGCAGTGTGGGGCAGCGGGAAAACCATGTGGGCCCTGGGCAGACACCAGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088790.9
3UTR CCA 72 bp CCCACCTGTCCCCAAGCAGAGGGTGGGCACACTCTTTaGTGGGTAGGGTGTACTGCAGACTGGCTTGCTGGG +
Preference number: 3 (lower is better)
Translates to: PTCPQAEGGHTL*WVGCTADWLAG
Trigger: CCCAGCAAGCCAGTCTGCAGTACACCCTACCCACCAAAGAGTGTGCCCACCCTCTGCTTGGGGACAGGTGGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000032201.8
3UTR CCA 72 bp CCGCTGCCCCACACTGCACGGCTGTGGACACATAGCTaGAAGTGGGATTATGGTCGGCTTCCGCGAGGCACA +
Preference number: 3 (lower is better)
Translates to: PLPHTARLWTHS*KWDYGRLPRGT
Trigger: TGTGCCTCGCGGAAGCCGACCATAATCCCACTTCCAGCTATGTGTCCACAGCCGTGCAGTGTGGGGCAGCGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088790.9
3UTR CCA 72 bp AGGGGATCTAACCAGAGACTCAGAGCACCCACCCAATaGGGCAGGTGTGCTAGGAGGGCAGACCACCAGGAG +
Preference number: 3 (lower is better)
Translates to: RGSNQRLRAPTQ*GRCARRADHQE
Trigger: CTCCTGGTGGTCTGCCCTCCTAGCACACCTGCCCCATTGGGTGGGTGCTCTGAGTCTCTGGTTAGATCCCCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000032201.8
3UTR CCA 72 bp ACCTGTCCCCAAGCAGAGGGTGGGCACACTCTTTGGTaGGTAGGGTGTACTGCAGACTGGCTTGCTGGGGGT +
Preference number: 3 (lower is better)
Translates to: TCPQAEGGHTLW*VGCTADWLAGG
Trigger: ACCCCCAGCAAGCCAGTCTGCAGTACACCCTACCCACCAAAGAGTGTGCCCACCCTCTGCTTGGGGACAGGT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000032201.8
3UTR-3UTR CAA 90 bp GAAAGCAGCAGTCTGGTGTCTGCCCAGGGCCCACATGGTTTTCCCGCTGCCCCAAAGCGTTACAGAGAGTaGGGATGGTGCAGAGAGGAC +
Preference number: 3 (lower is better)
Translates to: ESSSLVSAQGPHGFPAAPKRYRE*GWCRED
Trigger: GTCCTCTCTGCACCATCCCAACTCTCTGTAACGCTT...TGGGGCAGCGGGAAAACCATGTGGGCCCTGGGCAGACACCAGACTGCTGCTTTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000088790.9
3UTR GCA 72 bp AGAGGGTGGGCACACTCTTTGGTGGGTAGGGTGTACTaGAGACTGGCTTGCTGGGGGTGCAGAATTTGTGGC +
Preference number: 3 (lower is better)
Translates to: RGWAHSLVGRVY*RLACWGCRICG
Trigger: GCCACAAATTCTGCACCCCCAGCAAGCCAGTCTGCAGTACACCCTACCCACCAAAGAGTGTGCCCACCCTCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000032201.8
3UTR CCA 72 bp GGGCACACTCTTTGGTGGGTAGGGTGTACTGCAGACTaGCTTGCTGGGGGTGCAGAATTTGTGGCTCAAGGC +
Preference number: 3 (lower is better)
Translates to: GHTLWWVGCTAD*LAGGAEFVAQG
Trigger: GCCTTGAGCCACAAATTCTGCACCCCCAGCAAGCCAGTCTGCAGTACACCCTACCCACCAAAGAGTGTGCCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000032201.8
3UTR GCA 72 bp GTGGGTAGGGTGTACTGCAGACTGGCTTGCTGGGGGTaGAGAATTTGTGGCTCAAGGCCTCTGATGACAGCA +
Preference number: 3 (lower is better)
Translates to: VGRVYCRLACWG*RICGSRPLMTA
Trigger: TGCTGTCATCAGAGGCCTTGAGCCACAAATTCTGCACCCCCAGCAAGCCAGTCTGCAGTACACCCTACCCAC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000032201.8
3UTR CCA 72 bp GAATGGCAGACCCCACACATGTGGACACAGAGCTCGTaGTGGCTAGTGATGAGCAGACCAACAGAGGTGCTA +
Preference number: 3 (lower is better)
Translates to: EWQTPHMWTQSS*WLVMSRPTEVL
Trigger: TAGCACCTCTGTTGGTCTGCTCATCACTAGCCACCACGAGCTCTGTGTCCACATGTGTGGGGTCTGCCATTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000032201.8
3UTR GCA 72 bp GGCTTCGTGAGTGACAACATCATGATGGGGGTAGGGTaGAAAGGATGTGAAAGCAGCAGTCTGGTGTCTGCC +
Preference number: 3 (lower is better)
Translates to: GFVSDNIMMGVG*KGCESSSLVSA
Trigger: GGCAGACACCAGACTGCTGCTTTCACATCCTTTGCACCCTACCCCCATCATGATGTTGTCACTCACGAAGCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000088790.9
3UTR-3UTR CAA 90 bp CAAATGGGCCAGCTATTTAGACTTGGAGCTCAGCCCTTGAGAGCTAACTTGCCCCTGGGGGTGCAGAATTaGTGGCTCAAGGCCTCTGAT +
Preference number: 3 (lower is better)
Translates to: QMGQLFRLGAQPLRANLPLGVQN*WLKASD
Trigger: ATCAGAGGCCTTGAGCCACAAATTCTGCACCCCCAG...GGGCAAGTTAGCTCTCAAGGGCTGAGCTCCAAGTCTAAATAGCTGGCCCATTTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000032201.8
3UTR-3UTR CAA 90 bp CAAATGGGCCAGCTATTTAGACTTGGAGCTCAGCCCTTGAGAGCTAACTTGCCCCATGTTTCTTCCCCCTaGGGAGTCCATTACCGTTCA +
Preference number: 3 (lower is better)
Translates to: QMGQLFRLGAQPLRANLPHVSSP*GVHYRS
Trigger: TGAACGGTAATGGACTCCCAAGGGGGAAGAAACATG...GGGCAAGTTAGCTCTCAAGGGCTGAGCTCCAAGTCTAAATAGCTGGCCCATTTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000032201.8
3UTR TCA 72 bp ACGTACCATAGCAGCATAAAGGACGGCCGGAAGAGCTaGCCCATGTGCCTTTCACACAAGCTCTATAAGAGC +
Preference number: 3 (lower is better)
Translates to: TYHSSIKDGRKS*PMCLSHKLYKS
Trigger: GCTCTTATAGAGCTTGTGTGAAAGGCACATGGGTCAGCTCTTCCGGCCGTCCTTTATGCTGCTATGGTACGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032201.8
3UTR TCA 72 bp CTTCCAAGAGCCACCCCTAAAGCCCTAGAGGAGTGCTaGGTGTCTGTGGCTACAACTGCCCATATAGAAAGA +
Preference number: 3 (lower is better)
Translates to: LPRATPKALEEC*VSVATTAHIER
Trigger: TCTTTCTATATGGGCAGTTGTAGCCACAGACACTCAGCACTCCTCTAGGGCTTTAGGGGTGGCTCTTGGAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000032201.8
3UTR TCA 72 bp AAATGGGCCAGCTATTTAGACTTGGAGCTCAGCCCTTaGGAGCTAACTTGCCCTAGCAAGTCACACTTACCG +
Preference number: 3 (lower is better)
Translates to: KWASYLDLELSP*ELTCPSKSHLP
Trigger: CGGTAAGTGTGACTTGCTAGGGCAAGTTAGCTCTCAAGGGCTGAGCTCCAAGTCTAAATAGCTGGCCCATTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032201.8
3UTR CCA 72 bp GACAGTTCAGGTACAATTTCTCATCCAAGTCATGAATaGCAGACCCCACACATGTGGACACAGAGCTCGTGG +
Preference number: 3 (lower is better)
Translates to: DSSGTISHPSHE*QTPHMWTQSSW
Trigger: CCACGAGCTCTGTGTCCACATGTGTGGGGTCTGCCATTCATGACTTGGATGAGAAATTGTACCTGAACTGTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000032201.8
3UTR TCA 72 bp TCAGTCAGTGTCAGGGAAACATCTAATGCAACTAGATaGACTGTCCTTCCCTTTGGGCATGAGCTGGCAAGC +
Preference number: 3 (lower is better)
Translates to: SVSVRETSNATR*TVLPFGHELAS
Trigger: GCTTGCCAGCTCATGCCCAAAGGGAAGGACAGTTCATCTAGTTGCATTAGATGTTTCCCTGACACTGACTGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032201.8
3UTR-3UTR CAA 90 bp CATGTGGGGTCACTTCTTTCCAGTTGCCTTGTATATAGCAAAGGCAACACCAAAGTGGACTTGATGCTCTaGGCATGTTTCTTCCCCCTT +
Preference number: 3 (lower is better)
Translates to: HVGSLLSSCLVYSKGNTKVDLML*ACFFPL
Trigger: AAGGGGGAAGAAACATGCCAAGAGCATCAAGTCCAC...TTTGGTGTTGCCTTTGCTATATACAAGGCAACTGGAAAGAAGTGACCCCACATG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000032201.8
3UTR TCA 72 bp AGGGCAGACCACCAGGAGGGAGGACCACCAGCTATTTaGAGTAAAACCATTTGGAAACCAGCTAAAACAAAC +
Preference number: 3 (lower is better)
Translates to: RADHQEGGPPAI*SKTIWKPAKTN
Trigger: GTTTGTTTTAGCTGGTTTCCAAATGGTTTTACTTCAAATAGCTGGTGGTCCTCCCTCCTGGTGGTCTGCCCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000032201.8
3UTR GCA 72 bp GAAGGAGTTTTGGCAAGAGCCGTATTTACTGTCCATTaGAAGGCCACAGCACCACAGACTATGTTCTTTCAG +
Preference number: 3 (lower is better)
Translates to: EGVLARAVFTVH*KATAPQTMFFQ
Trigger: CTGAAAGAACATAGTCTGTGGTGCTGTGGCCTTGCAATGGACAGTAAATACGGCTCTTGCCAAAACTCCTTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088790.9
3UTR CCA 72 bp ACAAAGAAAAGGGTTCGGAGGAGGCTTTGGTGTCGGTaGGATCAGAAACACTCTTTAAAAAGCGTTACAGAG +
Preference number: 3 (lower is better)
Translates to: TKKRVRRRLWCR*DQKHSLKSVTE
Trigger: CTCTGTAACGCTTTTTAAAGAGTGTTTCTGATCCCACCGACACCAAAGCCTCCTCCGAACCCTTTTCTTTGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000088790.9
3UTR TCA 72 bp ACAACTGCCCATATAGAAAGACAAGAACCTTACACGTaGGTCGTGGTTAGAACAGAGACCAAAACACGTACC +
Preference number: 3 (lower is better)
Translates to: TTAHIERQEPYT*VVVRTETKTRT
Trigger: GGTACGTGTTTTGGTCTCTGTTCTAACCACGACTCACGTGTAAGGTTCTTGTCTTTCTATATGGGCAGTTGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000032201.8
3UTR CCA 72 bp AAGACCAGGCAGTGTTTTGGTAATGTGACCTTTTCATaGGAAGTGACAGTCCACAGACAGCCAAAGAAACTT +
Preference number: 3 (lower is better)
Translates to: KTRQCFGNVTFS*EVTVHRQPKKL
Trigger: AAGTTTCTTTGGCTGTCTGTGGACTGTCACTTCCCATGAAAAGGTCACATTACCAAAACACTGCCTGGTCTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000032201.8
3UTR-3UTR CAA 90 bp AGAGCTGACCCATGTGCCTTTCACACAAGCTCTATAAGAGCCAAAACCTTGTTCTTCTTTCCAGTTGCCTaGTATATAGCAAAGGCAACA +
Preference number: 3 (lower is better)
Translates to: RADPCAFHTSSIRAKTLFFFPVA*YIAKAT
Trigger: TGTTGCCTTTGCTATATACAAGGCAACTGGAAAGAA...GAACAAGGTTTTGGCTCTTATAGAGCTTGTGTGAAAGGCACATGGGTCAGCTCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000032201.8
3UTR CCA 72 bp CAGATATTTACAAAGAAAAGGGTTCGGAGGAGGCTTTaGTGTCGGTGGGATCAGAAACACTCTTTAAAAAGC +
Preference number: 3 (lower is better)
Translates to: QIFTKKRVRRRL*CRWDQKHSLKS
Trigger: GCTTTTTAAAGAGTGTTTCTGATCCCACCGACACCAAAGCCTCCTCCGAACCCTTTTCTTTGTAAATATCTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000088790.9
CDS-3UTR CCA 90 bp GGGCCCACATGGTTTTCCCGCTGCCCCACACTGCACGGCTGTGGACACATAGCTCGTCGGGGCAGGTCCTaGTACTGGGGGAGCAGGTGG +
Preference number: 4 (lower is better)
Translates to: GPTWFSRCPTLHGCGHIARRGRS*YWGSRW
Trigger: CCACCTGCTCCCCCAGTACCAGGACCTGCCCCGACG...AGCTATGTGTCCACAGCCGTGCAGTGTGGGGCAGCGGGAAAACCATGTGGGCCC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000088790.9
CDS-3UTR GCA 90 bp GAAAGCAGCAGTCTGGTGTCTGCCCAGGGCCCACATGGTTTTCCCGCTGCCCCACCACCGCGCTGGCAGTaGCCACACCTCCAGAGAAGG +
Preference number: 4 (lower is better)
Translates to: ESSSLVSAQGPHGFPAAPPPRWQ*PHLQRR
Trigger: CCTTCTCTGGAGGTGTGGGCACTGCCAGCGCGGTGG...TGGGGCAGCGGGAAAACCATGTGGGCCCTGGGCAGACACCAGACTGCTGCTTTC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000088790.9
CDS-3UTR GCA 90 bp AGCAGTCTGGTGTCTGCCCAGGGCCCACATGGTTTTCCCGCTGCCCCACACTGCAAGCCTGGGTCTGTCTaGGGGTCTGCCGGTCAGTGG +
Preference number: 4 (lower is better)
Translates to: SSLVSAQGPHGFPAAPHCKPGSV*GSAGQW
Trigger: CCACTGACCGGCAGACCCGCAGACAGACCCAGGCTT...GCAGTGTGGGGCAGCGGGAAAACCATGTGGGCCCTGGGCAGACACCAGACTGCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000088790.9
CDS-3UTR CCA 90 bp AAGCAGCAGTCTGGTGTCTGCCCAGGGCCCACATGGTTTTCCCGCTGCCCCACAACCCGGAAGGTCTGCTaGGCCCAGGAGTCCCCTGAG +
Preference number: 4 (lower is better)
Translates to: KQQSGVCPGPTWFSRCPTTRKVC*AQESPE
Trigger: CTCAGGGGACTCCTGGGCCCAGCAGACCTTCCGGGT...TGTGGGGCAGCGGGAAAACCATGTGGGCCCTGGGCAGACACCAGACTGCTGCTT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000088790.9
CDS-3UTR CCA 90 bp GGGCCCACATGGTTTTCCCGCTGCCCCACACTGCACGGCTGTGGACACATAGCTTCCACAGCATCACAGTaGCCGTCGGGGCAGGTCCTG +
Preference number: 4 (lower is better)
Translates to: GPTWFSRCPTLHGCGHIASTASQ*PSGQVL
Trigger: CAGGACCTGCCCCGACGGCCACTGTGATGCTGTGGA...AGCTATGTGTCCACAGCCGTGCAGTGTGGGGCAGCGGGAAAACCATGTGGGCCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000088790.9
CDS-3UTR GCA 90 bp AGCAGTCTGGTGTCTGCCCAGGGCCCACATGGTTTTCCCGCTGCCCCACACTGCGGAAGTGGTAGAAGGTaGCAGGAGGCCTGTTCTCCC +
Preference number: 4 (lower is better)
Translates to: SSLVSAQGPHGFPAAPHCGSGRR*QEACSP
Trigger: GGGAGAACAGGCCTCCTGGCACCTTCTACCACTTCC...GCAGTGTGGGGCAGCGGGAAAACCATGTGGGCCCTGGGCAGACACCAGACTGCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000088790.9
CDS-3UTR GCA 90 bp GATGTGAAAGCAGCAGTCTGGTGTCTGCCCAGGGCCCACATGGTTTTCCCGCTGCCAGGGCCCAGCGAGTaGTCACCTCCAGGCAGTCTG +
Preference number: 4 (lower is better)
Translates to: DVKAAVWCLPRAHMVFPLPGPSE*SPPGSL
Trigger: CAGACTGCCTGGAGGTGAGCACTCGCTGGGCCCTGG...CAGCGGGAAAACCATGTGGGCCCTGGGCAGACACCAGACTGCTGCTTTCACATC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088790.9
CDS-3UTR GCA 90 bp AGCAGTCTGGTGTCTGCCCAGGGCCCACATGGTTTTCCCGCTGCCCCACACTGCGTTGGCACCAGGGCCTaGCACTATGCACAAAGCCTC +
Preference number: 4 (lower is better)
Translates to: SSLVSAQGPHGFPAAPHCVGTRA*HYAQSL
Trigger: GAGGCTTTGTGCATAGTGGCAGGCCCTGGTGCCAAC...GCAGTGTGGGGCAGCGGGAAAACCATGTGGGCCCTGGGCAGACACCAGACTGCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000088790.9
CDS-3UTR CCA 90 bp AAGTGGGATTATGGTCGGCTTCCGCGAGGCACACACCAGCCCAGGAGCAGCCTGGGACACGGCTGTCTCTaGGATGCAGAGATCCTGGGC +
Preference number: 4 (lower is better)
Translates to: KWDYGRLPRGTHQPRSSLGHGCL*DAEILG
Trigger: GCCCAGGATCTCTGCATCCCAGAGACAGCCGTGTCC...CAGGCTGCTCCTGGGCTGGTGTGTGCCTCGCGGAAGCCGACCATAATCCCACTT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088790.9
CDS-3UTR CCA 90 bp AAGCAGCAGTCTGGTGTCTGCCCAGGGCCCACATGGTTTTCCCGCTGCCCCACACACCTCCAGAGAAGGTaGGCGCCGAGTCGTCCTCAT +
Preference number: 4 (lower is better)
Translates to: KQQSGVCPGPTWFSRCPTHLQRR*APSRPH
Trigger: ATGAGGACGACTCGGCGCCCACCTTCTCTGGAGGTG...TGTGGGGCAGCGGGAAAACCATGTGGGCCCTGGGCAGACACCAGACTGCTGCTT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000088790.9
CDS-3UTR CCA 90 bp GAAAGCAGCAGTCTGGTGTCTGCCCAGGGCCCACATGGTTTTCCCGCTGCCCCAGGAGGAATAACTGATTaGGAAGCCCTGGGCCGGCCG +
Preference number: 4 (lower is better)
Translates to: ESSSLVSAQGPHGFPAAPGGITD*EALGRP
Trigger: CGGCCGGCCCAGGGCTTCCCAATCAGTTATTCCTCC...TGGGGCAGCGGGAAAACCATGTGGGCCCTGGGCAGACACCAGACTGCTGCTTTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000088790.9
CDS-3UTR TCA 90 bp GGGCCCACATGGTTTTCCCGCTGCCCCACACTGCACGGCTGTGGACACATAGCTGGCCCAGGAGTCCCCTaGGAGGAGTGTGTTTGTGTA +
Preference number: 4 (lower is better)
Translates to: GPTWFSRCPTLHGCGHIAGPGVP*EECVCV
Trigger: TACACAAACACACTCCTCTCAGGGGACTCCTGGGCC...AGCTATGTGTCCACAGCCGTGCAGTGTGGGGCAGCGGGAAAACCATGTGGGCCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000088790.9
CDS-3UTR GCA 90 bp GCAAGCCAGGGATTAAAACAAGACAGACCCACCTGTCCCCAAGCAGAGGGTGGGCCAGGGCCCAGCGAGTaGTCACCTCCAGGCAGTCTG +
Preference number: 4 (lower is better)
Translates to: ASQGLKQDRPTCPQAEGGPGPSE*SPPGSL
Trigger: CAGACTGCCTGGAGGTGAGCACTCGCTGGGCCCTGG...CCCACCCTCTGCTTGGGGACAGGTGGGTCTGTCTTGTTTTAATCCCTGGCTTGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000032201.8
CDS-3UTR GCA 90 bp AGCAGCAGTCTGGTGTCTGCCCAGGGCCCACATGGTTTTCCCGCTGCCCCACACCAGGGCCTGCCACTATaGACAAAGCCTCCAGCACAT +
Preference number: 4 (lower is better)
Translates to: SSSLVSAQGPHGFPAAPHQGLPL*TKPPAH
Trigger: ATGTGCTGGAGGCTTTGTGCATAGTGGCAGGCCCTG...GTGTGGGGCAGCGGGAAAACCATGTGGGCCCTGGGCAGACACCAGACTGCTGCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000088790.9
CDS-3UTR GCA 90 bp AAAGGGGCCGGTGGACTTGATGCTCTTGGCATGTTTCTTCCCCCTTGGGAGTCCCCACCGCGCTGGCAGTaGCCACACCTCCAGAGAAGG +
Preference number: 4 (lower is better)
Translates to: KGAGGLDALGMFLPPWESPPRWQ*PHLQRR
Trigger: CCTTCTCTGGAGGTGTGGGCACTGCCAGCGCGGTGG...GGACTCCCAAGGGGGAAGAAACATGCCAAGAGCATCAAGTCCACCGGCCCCTTT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000032201.8
CDS-3UTR GCA 90 bp AGCAGTCTGGTGTCTGCCCAGGGCCCACATGGTTTTCCCGCTGCCCCACACTGCTTCCAGGGTAGGGGTTaGCTCCCAGGGTCACAATCT +
Preference number: 4 (lower is better)
Translates to: SSLVSAQGPHGFPAAPHCFQGRG*LPGSQS
Trigger: AGATTGTGACCCTGGGAGGCAACCCCTACCCTGGAA...GCAGTGTGGGGCAGCGGGAAAACCATGTGGGCCCTGGGCAGACACCAGACTGCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000088790.9
CDS-3UTR CCA 90 bp AGCAGTCTGGTGTCTGCCCAGGGCCCACATGGTTTTCCCGCTGCCCCACACTGCGACCCCAGAAAGACCTaGAGGAAGATGGTGAGCAGG +
Preference number: 4 (lower is better)
Translates to: SSLVSAQGPHGFPAAPHCDPRKT*RKMVSR
Trigger: CCTGCTCACCATCTTCCTCCAGGTCTTTCTGGGGTC...GCAGTGTGGGGCAGCGGGAAAACCATGTGGGCCCTGGGCAGACACCAGACTGCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000088790.9
CDS-3UTR CCA 90 bp GGGTGCAAAGGATGTGAAAGCAGCAGTCTGGTGTCTGCCCAGGGCCCACATGGTTCACACAGTGGGCCCTaGCTGTCCTCTGGCTCGCAG +
Preference number: 4 (lower is better)
Translates to: GCKGCESSSLVSAQGPHGSHSGP*LSSGSQ
Trigger: CTGCGAGCCAGAGGACAGCCAGGGCCCACTGTGTGA...ACCATGTGGGCCCTGGGCAGACACCAGACTGCTGCTTTCACATCCTTTGCACCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088790.9
CDS-3UTR TCA 90 bp AAGTGGGATTATGGTCGGCTTCCGCGAGGCACACACCAGCCCAGGAGCAGCCTGGAAGGTCATTTCCGCTaGTGCAATGGGCGGCTTGTG +
Preference number: 4 (lower is better)
Translates to: KWDYGRLPRGTHQPRSSLEGHFR*CNGRLV
Trigger: CACAAGCCGCCCATTGCATCAGCGGAAATGACCTTC...CAGGCTGCTCCTGGGCTGGTGTGTGCCTCGCGGAAGCCGACCATAATCCCACTT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088790.9
CDS-3UTR CCA 90 bp AAAGGGGCCGGTGGACTTGATGCTCTTGGCATGTTTCTTCCCCCTTGGGAGTCCTCACACAGTGGGCCCTaGCTGTCCTCTGGCTCGCAG +
Preference number: 4 (lower is better)
Translates to: KGAGGLDALGMFLPPWESSHSGP*LSSGSQ
Trigger: CTGCGAGCCAGAGGACAGCCAGGGCCCACTGTGTGA...GGACTCCCAAGGGGGAAGAAACATGCCAAGAGCATCAAGTCCACCGGCCCCTTT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000032201.8
CDS-3UTR CCA 90 bp AGCAGCAGTCTGGTGTCTGCCCAGGGCCCACATGGTTTTCCCGCTGCCCCACACTTTTCACAGCCACTGTaGTGTATCCTGCCCGGCCTT +
Preference number: 4 (lower is better)
Translates to: SSSLVSAQGPHGFPAAPHFSQPL*CILPGL
Trigger: AAGGCCGGGCAGGATACACCACAGTGGCTGTGAAAA...GTGTGGGGCAGCGGGAAAACCATGTGGGCCCTGGGCAGACACCAGACTGCTGCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000088790.9
CDS-3UTR CCA 90 bp AAGCAGCAGTCTGGTGTCTGCCCAGGGCCCACATGGTTTTCCCGCTGCCCCACAACCCTTTCATCTGGGTaGTCCAGCGAGCTGGAGTTG +
Preference number: 4 (lower is better)
Translates to: KQQSGVCPGPTWFSRCPTTLSSG*SSELEL
Trigger: CAACTCCAGCTCGCTGGACCACCCAGATGAAAGGGT...TGTGGGGCAGCGGGAAAACCATGTGGGCCCTGGGCAGACACCAGACTGCTGCTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000088790.9
CDS-3UTR CCA 90 bp AAGCAGCAGTCTGGTGTCTGCCCAGGGCCCACATGGTTTTCCCGCTGCCCCACAGTGAGTCCGAAGGTGTaGATGCAGCCAGGTCCAAGT +
Preference number: 4 (lower is better)
Translates to: KQQSGVCPGPTWFSRCPTVSPKV*MQPGPS
Trigger: ACTTGGACCTGGCTGCATCCACACCTTCGGACTCAC...TGTGGGGCAGCGGGAAAACCATGTGGGCCCTGGGCAGACACCAGACTGCTGCTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000088790.9
CDS-3UTR TCA 90 bp GAAAGCAGCAGTCTGGTGTCTGCCCAGGGCCCACATGGTTTTCCCGCTGCCCCACCAGTAAGCATCCCTTaGGAAATAGAGGCCCAGTGG +
Preference number: 4 (lower is better)
Translates to: ESSSLVSAQGPHGFPAAPPVSIP*EIEAQW
Trigger: CCACTGGGCCTCTATTTCTCAAGGGATGCTTACTGG...TGGGGCAGCGGGAAAACCATGTGGGCCCTGGGCAGACACCAGACTGCTGCTTTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000088790.9
CDS-3UTR GCA 90 bp AAAGGGGCCGGTGGACTTGATGCTCTTGGCATGTTTCTTCCCCCTTGGGAGTCCGGCGGCTTGTGCCCATaGTTGTGGTGGTGGCAGACA +
Preference number: 4 (lower is better)
Translates to: KGAGGLDALGMFLPPWESGGLCP*LWWWQT
Trigger: TGTCTGCCACCACCACAAGCATGGGCACAAGCCGCC...GGACTCCCAAGGGGGAAGAAACATGCCAAGAGCATCAAGTCCACCGGCCCCTTT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000032201.8
CDS-3UTR CCA 90 bp CAAATGGGCCAGCTATTTAGACTTGGAGCTCAGCCCTTGAGAGCTAACTTGCCCCGTCGGGGCAGGTCCTaGTACTGGGGGAGCAGGTGG +
Preference number: 4 (lower is better)
Translates to: QMGQLFRLGAQPLRANLPRRGRS*YWGSRW
Trigger: CCACCTGCTCCCCCAGTACCAGGACCTGCCCCGACG...GGGCAAGTTAGCTCTCAAGGGCTGAGCTCCAAGTCTAAATAGCTGGCCCATTTG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000032201.8
CDS-3UTR TCA 90 bp AAAGGGGCCGGTGGACTTGATGCTCTTGGCATGTTTCTTCCCCCTTGGGAGTCCGGCCCAGGAGTCCCCTaGGAGGAGTGTGTTTGTGTA +
Preference number: 4 (lower is better)
Translates to: KGAGGLDALGMFLPPWESGPGVP*EECVCV
Trigger: TACACAAACACACTCCTCTCAGGGGACTCCTGGGCC...GGACTCCCAAGGGGGAAGAAACATGCCAAGAGCATCAAGTCCACCGGCCCCTTT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000032201.8
CDS-3UTR TCA 90 bp ATGGTTTTCCCGCTGCCCCACACTGCACGGCTGTGGACACATAGCTGGAAGTGGGGGTGTCTCCTCTTCTaGGAGCCCATCGTCATACAG +
Preference number: 4 (lower is better)
Translates to: MVFPLPHTARLWTHSWKWGCLLF*EPIVIQ
Trigger: CTGTATGACGATGGGCTCTCAGAAGAGGAGACACCC...CCACTTCCAGCTATGTGTCCACAGCCGTGCAGTGTGGGGCAGCGGGAAAACCAT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000088790.9
CDS-3UTR TCA 90 bp AAAGGGGCCGGTGGACTTGATGCTCTTGGCATGTTTCTTCCCCCTTGGGAGTCCTGCCATCGGCTCTCGTaGGTGGTACAGGACTCTCTC +
Preference number: 4 (lower is better)
Translates to: KGAGGLDALGMFLPPWESCHRLS*VVQDSL
Trigger: GAGAGAGTCCTGTACCACTCACGAGAGCCGATGGCA...GGACTCCCAAGGGGGAAGAAACATGCCAAGAGCATCAAGTCCACCGGCCCCTTT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000032201.8
CDS-3UTR GCA 90 bp AAAGGGGCCGGTGGACTTGATGCTCTTGGCATGTTTCTTCCCCCTTGGGAGTCCGTTGGCACCAGGGCCTaGCACTATGCACAAAGCCTC +
Preference number: 4 (lower is better)
Translates to: KGAGGLDALGMFLPPWESVGTRA*HYAQSL
Trigger: GAGGCTTTGTGCATAGTGGCAGGCCCTGGTGCCAAC...GGACTCCCAAGGGGGAAGAAACATGCCAAGAGCATCAAGTCCACCGGCCCCTTT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000032201.8
CDS-3UTR GCA 90 bp AAGCAGCAGTCTGGTGTCTGCCCAGGGCCCACATGGTTTTCCCGCTGCCCCACATCCTGCTTCCAGCACTaGAGCATCAGACGGTACATT +
Preference number: 4 (lower is better)
Translates to: KQQSGVCPGPTWFSRCPTSCFQH*SIRRYI
Trigger: AATGTACCGTCTGATGCTGCAGTGCTGGAAGCAGGA...TGTGGGGCAGCGGGAAAACCATGTGGGCCCTGGGCAGACACCAGACTGCTGCTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000088790.9
CDS-3UTR CCA 90 bp GGGTGCAAAGGATGTGAAAGCAGCAGTCTGGTGTCTGCCCAGGGCCCACATGGTTCACCGTCTCTTTGTTaGCACCAGGGCCTGCCACTA +
Preference number: 4 (lower is better)
Translates to: GCKGCESSSLVSAQGPHGSPSLC*HQGLPL
Trigger: TAGTGGCAGGCCCTGGTGCCAACAAAGAGACGGTGA...ACCATGTGGGCCCTGGGCAGACACCAGACTGCTGCTTTCACATCCTTTGCACCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088790.9
CDS-3UTR CCA 90 bp GCAAGCCAGGGATTAAAACAAGACAGACCCACCTGTCCCCAAGCAGAGGGTGGGCAGCTCCCCAGACGCTaGCACCACATCTGCATCGAA +
Preference number: 4 (lower is better)
Translates to: ASQGLKQDRPTCPQAEGGQLPRR*HHICIE
Trigger: TTCGATGCAGATGTGGTGCCAGCGTCTGGGGAGCTG...CCCACCCTCTGCTTGGGGACAGGTGGGTCTGTCTTGTTTTAATCCCTGGCTTGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000032201.8
CDS-3UTR TCA 90 bp AAGTGGGATTATGGTCGGCTTCCGCGAGGCACACACCAGCCCAGGAGCAGCCTGCTTGTTTCAGAAGGTTaGACTCAGACAGCAGGTCTC +
Preference number: 4 (lower is better)
Translates to: KWDYGRLPRGTHQPRSSLLVSEG*TQTAGL
Trigger: GAGACCTGCTGTCTGAGTTCAACCTTCTGAAACAAG...CAGGCTGCTCCTGGGCTGGTGTGTGCCTCGCGGAAGCCGACCATAATCCCACTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088790.9
CDS-3UTR GCA 90 bp ATGGGCCCTGAGAATTCTGCTCTAATCCGCTTCTCCTGTGTCATCGTAAGTTGCTCCACCCGGAAGGTCTaGTGGGCCCAGGAGTCCCCT +
Preference number: 4 (lower is better)
Translates to: MGPENSALIRFSCVIVSCSTRKV*WAQESP
Trigger: AGGGGACTCCTGGGCCCAGCAGACCTTCCGGGTGGA...GCAACTTACGATGACACAGGAGAAGCGGATTAGAGCAGAATTCTCAGGGCCCAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088790.9
CDS-3UTR GCA 90 bp AAAGGGGCCGGTGGACTTGATGCTCTTGGCATGTTTCTTCCCCCTTGGGAGTCCTTCCAGGGTAGGGGTTaGCTCCCAGGGTCACAATCT +
Preference number: 4 (lower is better)
Translates to: KGAGGLDALGMFLPPWESFQGRG*LPGSQS
Trigger: AGATTGTGACCCTGGGAGGCAACCCCTACCCTGGAA...GGACTCCCAAGGGGGAAGAAACATGCCAAGAGCATCAAGTCCACCGGCCCCTTT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000032201.8
CDS-3UTR TCA 90 bp GGTGCAAAGGATGTGAAAGCAGCAGTCTGGTGTCTGCCCAGGGCCCACATGGTTGGAAGGCTGTGGCCTTaGCAACTTTTCCAAACTCGC +
Preference number: 4 (lower is better)
Translates to: GAKDVKAAVWCLPRAHMVGRLWP*QLFQTR
Trigger: GCGAGTTTGGAAAAGTTGTCAAGGCCACAGCCTTCC...AACCATGTGGGCCCTGGGCAGACACCAGACTGCTGCTTTCACATCCTTTGCACC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088790.9
CDS-3UTR GCA 90 bp CAAATGGGCCAGCTATTTAGACTTGGAGCTCAGCCCTTGAGAGCTAACTTGCCCAGCTGGAGTTGCGGCTaGCTCCACCGCTCACATAGG +
Preference number: 4 (lower is better)
Translates to: QMGQLFRLGAQPLRANLPSWSCG*LHRSHR
Trigger: CCTATGTGAGCGGTGGAGGCAGCCGCAACTCCAGCT...GGGCAAGTTAGCTCTCAAGGGCTGAGCTCCAAGTCTAAATAGCTGGCCCATTTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032201.8
CDS-3UTR CCA 90 bp AATTCTGCTCTAATCCGCTTCTCCTGTGTCATCGTAAGTTGCTGGGCTGTGTGGCAGCGCATCACACAGTaGGCCCTGGCTGTCCTCTGG +
Preference number: 4 (lower is better)
Translates to: NSALIRFSCVIVSCWAVWQRITQ*ALAVLW
Trigger: CCAGAGGACAGCCAGGGCCCACTGTGTGATGCGCTG...CCACACAGCCCAGCAACTTACGATGACACAGGAGAAGCGGATTAGAGCAGAATT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088790.9
CDS-3UTR CCA 90 bp AAAGGGGCCGGTGGACTTGATGCTCTTGGCATGTTTCTTCCCCCTTGGGAGTCCTTTTCACAGCCACTGTaGTGTATCCTGCCCGGCCTT +
Preference number: 4 (lower is better)
Translates to: KGAGGLDALGMFLPPWESFSQPL*CILPGL
Trigger: AAGGCCGGGCAGGATACACCACAGTGGCTGTGAAAA...GGACTCCCAAGGGGGAAGAAACATGCCAAGAGCATCAAGTCCACCGGCCCCTTT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000032201.8
CDS-3UTR CCA 90 bp GCAAGCCAGGGATTAAAACAAGACAGACCCACCTGTCCCCAAGCAGAGGGTGGGTGTTTTCAATCCATGTaGAAGGGAGGGAGCGCGGGA +
Preference number: 4 (lower is better)
Translates to: ASQGLKQDRPTCPQAEGGCFQSM*KGGSAG
Trigger: TCCCGCGCTCCCTCCCTTCCACATGGATTGAAAACA...CCCACCCTCTGCTTGGGGACAGGTGGGTCTGTCTTGTTTTAATCCCTGGCTTGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000032201.8
CDS-3UTR CCA 90 bp GGTGCAAAGGATGTGAAAGCAGCAGTCTGGTGTCTGCCCAGGGCCCACATGGTTTGTTTTCAATCCATGTaGAAGGGAGGGAGCGCGGGA +
Preference number: 4 (lower is better)
Translates to: GAKDVKAAVWCLPRAHMVCFQSM*KGGSAG
Trigger: TCCCGCGCTCCCTCCCTTCCACATGGATTGAAAACA...AACCATGTGGGCCCTGGGCAGACACCAGACTGCTGCTTTCACATCCTTTGCACC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088790.9
CDS-3UTR TCA 90 bp AAAGGGGCCGGTGGACTTGATGCTCTTGGCATGTTTCTTCCCCCTTGGGAGTCCGCAGTACAGACACGTTaGAATGGAGGACGAGGATAC +
Preference number: 4 (lower is better)
Translates to: KGAGGLDALGMFLPPWESAVQTR*NGGRGY
Trigger: GTATCCTCGTCCTCCATTTCAACGTGTCTGTACTGC...GGACTCCCAAGGGGGAAGAAACATGCCAAGAGCATCAAGTCCACCGGCCCCTTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000032201.8
CDS-3UTR TCA 90 bp CAAATGGGCCAGCTATTTAGACTTGGAGCTCAGCCCTTGAGAGCTAACTTGCCCCAATTGCCATCCACTTaGCGGGAATCCGGCCCTTGC +
Preference number: 4 (lower is better)
Translates to: QMGQLFRLGAQPLRANLPQLPST*RESGPC
Trigger: GCAAGGGCCGGATTCCCGTCAAGTGGATGGCAATTG...GGGCAAGTTAGCTCTCAAGGGCTGAGCTCCAAGTCTAAATAGCTGGCCCATTTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000032201.8
CDS-3UTR TCA 90 bp GGGTGCAAAGGATGTGAAAGCAGCAGTCTGGTGTCTGCCCAGGGCCCACATGGTCTGTCTTCAGAAGGTTaGAGAGTCGTTCAGGAGGAA +
Preference number: 4 (lower is better)
Translates to: GCKGCESSSLVSAQGPHGLSSEG*RVVQEE
Trigger: TTCCTCCTGAACGACTCTTCAACCTTCTGAAGACAG...ACCATGTGGGCCCTGGGCAGACACCAGACTGCTGCTTTCACATCCTTTGCACCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088790.9
CDS-3UTR GCA 90 bp AGAGCTGACCCATGTGCCTTTCACACAAGCTCTATAAGAGCCAAAACCTTGTTCTCCACCCGGAAGGTCTaGTGGGCCCAGGAGTCCCCT +
Preference number: 4 (lower is better)
Translates to: RADPCAFHTSSIRAKTLFSTRKV*WAQESP
Trigger: AGGGGACTCCTGGGCCCAGCAGACCTTCCGGGTGGA...GAACAAGGTTTTGGCTCTTATAGAGCTTGTGTGAAAGGCACATGGGTCAGCTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000032201.8
CDS-3UTR GCA 90 bp AAAGGGGCCGGTGGACTTGATGCTCTTGGCATGTTTCTTCCCCCTTGGGAGTCCTTGATGCTGGAAGGCTaGAGCTTGTACTGGATGGAG +
Preference number: 4 (lower is better)
Translates to: KGAGGLDALGMFLPPWESLMLEG*SLYWME
Trigger: CTCCATCCAGTACAAGCTGCAGCCTTCCAGCATCAA...GGACTCCCAAGGGGGAAGAAACATGCCAAGAGCATCAAGTCCACCGGCCCCTTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000032201.8
3UTR CAA 72 bp ATGATGTGCACAAAGGGGCCGGTGGACTTGATGCTCTaGGCATGTTTCTTCCCCCTTGGGAGTCCATTACCG +
Preference number: 4 (lower is better)
Translates to: MMCTKGPVDLML*ACFFPLGSPLP
Trigger: CGGTAATGGACTCCCAAGGGGGAAGAAACATGCCAAGAGCATCAAGTCCACCGGCCCCTTTGTGCACATCAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000032201.8
3UTR CAA 72 bp TTGGCCAGTATGATGTGCACAAAGGGGCCGGTGGACTaGATGCTCTTGGCATGTTTCTTCCCCCTTGGGAGT +
Preference number: 4 (lower is better)
Translates to: LASMMCTKGPVD*MLLACFFPLGS
Trigger: ACTCCCAAGGGGGAAGAAACATGCCAAGAGCATCAAGTCCACCGGCCCCTTTGTGCACATCATACTGGCCAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000032201.8
CDS-3UTR TCA 90 bp AGAGCCGTATTTACTGTCCATTGCAAGGCCACAGCACCACAGACTATGTTCTTTAGGCCCCTGGAAGTCTaGGTCGTTGACCAGGACCGC +
Preference number: 4 (lower is better)
Translates to: RAVFTVHCKATAPQTMFFRPLEV*VVDQDR
Trigger: GCGGTCCTGGTCAACGACTCAGACTTCCAGGGGCCT...AAAGAACATAGTCTGTGGTGCTGTGGCCTTGCAATGGACAGTAAATACGGCTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088790.9
CDS-3UTR TCA 90 bp TTTTGGCAAGAGCCGTATTTACTGTCCATTGCAAGGCCACAGCACCACAGACTAATGTCCCCTCCACAGTaGCCACTAGCGAAGCCTGGG +
Preference number: 4 (lower is better)
Translates to: FWQEPYLLSIARPQHHRLMSPPQ*PLAKPG
Trigger: CCCAGGCTTCGCTAGTGGTCACTGTGGAGGGGACAT...TAGTCTGTGGTGCTGTGGCCTTGCAATGGACAGTAAATACGGCTCTTGCCAAAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000088790.9
CDS-3UTR GCA 90 bp AGAGCTGACCCATGTGCCTTTCACACAAGCTCTATAAGAGCCAAAACCTTGTTCAAGCCTGGGTCTGTCTaGGGGTCTGCCGGTCAGTGG +
Preference number: 4 (lower is better)
Translates to: RADPCAFHTSSIRAKTLFKPGSV*GSAGQW
Trigger: CCACTGACCGGCAGACCCGCAGACAGACCCAGGCTT...GAACAAGGTTTTGGCTCTTATAGAGCTTGTGTGAAAGGCACATGGGTCAGCTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000032201.8
CDS-3UTR GCA 90 bp CAGTCAGTGTCAGGGAAACATCTAATGCAACTAGATGAACTGTCCTTCCCTTTGCCAGCGAGCTGGAGTTaGGGCTGCCTCCACCGCTCA +
Preference number: 4 (lower is better)
Translates to: QSVSGKHLMQLDELSFPLPASWS*GCLHRS
Trigger: TGAGCGGTGGAGGCAGCCGCAACTCCAGCTCGCTGG...CAAAGGGAAGGACAGTTCATCTAGTTGCATTAGATGTTTCCCTGACACTGACTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032201.8
CDS-3UTR CCA 90 bp TTTTGGCAAGAGCCGTATTTACTGTCCATTGCAAGGCCACAGCACCACAGACTACACCTCCAGGCAGTCTaGGTCACAACGGAAGGGCAG +
Preference number: 4 (lower is better)
Translates to: FWQEPYLLSIARPQHHRLHLQAV*VTTEGQ
Trigger: CTGCCCTTCCGTTGTGACCCAGACTGCCTGGAGGTG...TAGTCTGTGGTGCTGTGGCCTTGCAATGGACAGTAAATACGGCTCTTGCCAAAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088790.9
CDS-3UTR CCA 90 bp TCAGATATTTACAAAGAAAAGGGTTCGGAGGAGGCTTTGGTGTCGGTGGGATCACGAACACCTGCAGGGTaGCCACCACAGTGCCCTCCT +
Preference number: 4 (lower is better)
Translates to: SDIYKEKGSEEALVSVGSRTPAG*PPQCPP
Trigger: AGGAGGGCACTGTGGTGGCCACCCTGCAGGTGTTCG...TGATCCCACCGACACCAAAGCCTCCTCCGAACCCTTTTCTTTGTAAATATCTGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088790.9
CDS-3UTR CCA 90 bp CAGTCAGTGTCAGGGAAACATCTAATGCAACTAGATGAACTGTCCTTCCCTTTGACCCGGAAGGTCTGCTaGGCCCAGGAGTCCCCTGAG +
Preference number: 4 (lower is better)
Translates to: QSVSGKHLMQLDELSFPLTRKVC*AQESPE
Trigger: CTCAGGGGACTCCTGGGCCCAGCAGACCTTCCGGGT...CAAAGGGAAGGACAGTTCATCTAGTTGCATTAGATGTTTCCCTGACACTGACTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000032201.8
CDS-3UTR CCA 90 bp AGAGCTGACCCATGTGCCTTTCACACAAGCTCTATAAGAGCCAAAACCTTGTTCCCTGCCCCAGGCCCCTaGAAGTCTGAGTCGTTGACC +
Preference number: 4 (lower is better)
Translates to: RADPCAFHTSSIRAKTLFPAPGP*KSESLT
Trigger: GGTCAACGACTCAGACTTCCAGGGGCCTGGGGCAGG...GAACAAGGTTTTGGCTCTTATAGAGCTTGTGTGAAAGGCACATGGGTCAGCTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000032201.8
CDS-3UTR CCA 90 bp AGAGCCGTATTTACTGTCCATTGCAAGGCCACAGCACCACAGACTATGTTCTTTCCTGCCCCAGGCCCCTaGAAGTCTGAGTCGTTGACC +
Preference number: 4 (lower is better)
Translates to: RAVFTVHCKATAPQTMFFPAPGP*KSESLT
Trigger: GGTCAACGACTCAGACTTCCAGGGGCCTGGGGCAGG...AAAGAACATAGTCTGTGGTGCTGTGGCCTTGCAATGGACAGTAAATACGGCTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000088790.9
CDS-3UTR CCA 90 bp TGTGACCTTTTCATGGGAAGTGACAGTCCACAGACAGCCAAAGAAACTTCCAAGTCCACAGCATCACAGTaGCCGTCGGGGCAGGTCCTG +
Preference number: 4 (lower is better)
Translates to: CDLFMGSDSPQTAKETSKSTASQ*PSGQVL
Trigger: CAGGACCTGCCCCGACGGCCACTGTGATGCTGTGGA...CTTGGAAGTTTCTTTGGCTGTCTGTGGACTGTCACTTCCCATGAAAAGGTCACA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000032201.8
CDS-3UTR CCA 90 bp CAGTCAGTGTCAGGGAAACATCTAATGCAACTAGATGAACTGTCCTTCCCTTTGGGTGGTCCAGCGAGCTaGAGTTGCGGCTGCCTCCAC +
Preference number: 4 (lower is better)
Translates to: QSVSGKHLMQLDELSFPLGGPAS*SCGCLH
Trigger: GTGGAGGCAGCCGCAACTCCAGCTCGCTGGACCACC...CAAAGGGAAGGACAGTTCATCTAGTTGCATTAGATGTTTCCCTGACACTGACTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032201.8
CDS-3UTR TCA 90 bp TCAGATATTTACAAAGAAAAGGGTTCGGAGGAGGCTTTGGTGTCGGTGGGATCAGGAAGTCTGAGTCGTTaGCCAGGACCGCGAGCTGCA +
Preference number: 4 (lower is better)
Translates to: SDIYKEKGSEEALVSVGSGSLSR*PGPRAA
Trigger: TGCAGCTCGCGGTCCTGGTCAACGACTCAGACTTCC...TGATCCCACCGACACCAAAGCCTCCTCCGAACCCTTTTCTTTGTAAATATCTGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088790.9
CDS-3UTR GCA 90 bp AGAGCCGTATTTACTGTCCATTGCAAGGCCACAGCACCACAGACTATGTTCTTTGTCTCGATGGGCGAATaGTCCACCCGGAAGGTCTGC +
Preference number: 4 (lower is better)
Translates to: RAVFTVHCKATAPQTMFFVSMGE*STRKVC
Trigger: GCAGACCTTCCGGGTGGAGCATTCGCCCATCGAGAC...AAAGAACATAGTCTGTGGTGCTGTGGCCTTGCAATGGACAGTAAATACGGCTCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088790.9
CDS-3UTR GCA 90 bp TCAGATATTTACAAAGAAAAGGGTTCGGAGGAGGCTTTGGTGTCGGTGGGATCAGGCGGCTTGTGCCCATaGTTGTGGTGGTGGCAGACA +
Preference number: 4 (lower is better)
Translates to: SDIYKEKGSEEALVSVGSGGLCP*LWWWQT
Trigger: TGTCTGCCACCACCACAAGCATGGGCACAAGCCGCC...TGATCCCACCGACACCAAAGCCTCCTCCGAACCCTTTTCTTTGTAAATATCTGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088790.9
CDS-3UTR GCA 90 bp GCAAAACTGACTCCCTCCCCAGATCAGGTAAATTTAAATATCGAAGTCACCAGTCCAGCGAGCTGGAGTTaGGGCTGCCTCCACCGCTCA +
Preference number: 4 (lower is better)
Translates to: AKLTPSPDQVNLNIEVTSPASWS*GCLHRS
Trigger: TGAGCGGTGGAGGCAGCCGCAACTCCAGCTCGCTGG...ACTGGTGACTTCGATATTTAAATTTACCTGATCTGGGGAGGGAGTCAGTTTTGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000088790.9
CDS-3UTR GCA 90 bp ATGGGCCCTGAGAATTCTGCTCTAATCCGCTTCTCCTGTGTCATCGTAAGTTGCCTCTTGTCTGGCTCCTaGTTCCAGCACTGCAGCATC +
Preference number: 4 (lower is better)
Translates to: MGPENSALIRFSCVIVSCLLSGS*FQHCSI
Trigger: GATGCTGCAGTGCTGGAAGCAGGAGCCAGACAAGAG...GCAACTTACGATGACACAGGAGAAGCGGATTAGAGCAGAATTCTCAGGGCCCAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088790.9
CDS-3UTR CCA 90 bp TGTGACCTTTTCATGGGAAGTGACAGTCCACAGACAGCCAAAGAAACTTCCAAGCACCTCCAGGCAGTCTaGGTCACAACGGAAGGGCAG +
Preference number: 4 (lower is better)
Translates to: CDLFMGSDSPQTAKETSKHLQAV*VTTEGQ
Trigger: CTGCCCTTCCGTTGTGACCCAGACTGCCTGGAGGTG...CTTGGAAGTTTCTTTGGCTGTCTGTGGACTGTCACTTCCCATGAAAAGGTCACA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000032201.8
CDS-3UTR CCA 90 bp AGAGCTGACCCATGTGCCTTTCACACAAGCTCTATAAGAGCCAAAACCTTGTTCCACCTCCAGAGAAGGTaGGCGCCGAGTCGTCCTCAT +
Preference number: 4 (lower is better)
Translates to: RADPCAFHTSSIRAKTLFHLQRR*APSRPH
Trigger: ATGAGGACGACTCGGCGCCCACCTTCTCTGGAGGTG...GAACAAGGTTTTGGCTCTTATAGAGCTTGTGTGAAAGGCACATGGGTCAGCTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000032201.8
CDS-3UTR CCA 90 bp GCAAAACTGACTCCCTCCCCAGATCAGGTAAATTTAAATATCGAAGTCACCAGTGGTGGTCCAGCGAGCTaGAGTTGCGGCTGCCTCCAC +
Preference number: 4 (lower is better)
Translates to: AKLTPSPDQVNLNIEVTSGGPAS*SCGCLH
Trigger: GTGGAGGCAGCCGCAACTCCAGCTCGCTGGACCACC...ACTGGTGACTTCGATATTTAAATTTACCTGATCTGGGGAGGGAGTCAGTTTTGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000088790.9
CDS-3UTR TCA 90 bp ATGCTAGGCTTTCATTCTAGACAAGGACAGGTCGTTCTGGCCAGGTTTTTCAATATGTCCCCTCCACAGTaGCCACTAGCGAAGCCTGGG +
Preference number: 4 (lower is better)
Translates to: MLGFHSRQGQVVLARFFNMSPPQ*PLAKPG
Trigger: CCCAGGCTTCGCTAGTGGTCACTGTGGAGGGGACAT...ATTGAAAAACCTGGCCAGAACGACCTGTCCTTGTCTAGAATGAAAGCCTAGCAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000032201.8
CDS-3UTR TCA 90 bp ACACTCTTTAAAAAGCGTTACAGAGAGTTGGGATGGTGCAGAGAGGACAGCGTTCAATTGCCATCCACTTaGCGGGAATCCGGCCCTTGC +
Preference number: 4 (lower is better)
Translates to: TLFKKRYRELGWCREDSVQLPST*RESGPC
Trigger: GCAAGGGCCGGATTCCCGTCAAGTGGATGGCAATTG...AACGCTGTCCTCTCTGCACCATCCCAACTCTCTGTAACGCTTTTTAAAGAGTGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000088790.9
CDS-3UTR GCA 90 bp ATGCTAGGCTTTCATTCTAGACAAGGACAGGTCGTTCTGGCCAGGTTTTTCAATGTCTCGATGGGCGAATaGTCCACCCGGAAGGTCTGC +
Preference number: 4 (lower is better)
Translates to: MLGFHSRQGQVVLARFFNVSMGE*STRKVC
Trigger: GCAGACCTTCCGGGTGGAGCATTCGCCCATCGAGAC...ATTGAAAAACCTGGCCAGAACGACCTGTCCTTGTCTAGAATGAAAGCCTAGCAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000032201.8
CDS-3UTR GCA 90 bp TGTGACCTTTTCATGGGAAGTGACAGTCCACAGACAGCCAAAGAAACTTCCAAGTGTACTGAAGCTTGGTaGACTCAGGTCGCCGCAGGG +
Preference number: 4 (lower is better)
Translates to: CDLFMGSDSPQTAKETSKCTEAW*TQVAAG
Trigger: CCCTGCGGCGACCTGAGTGCACCAAGCTTCAGTACA...CTTGGAAGTTTCTTTGGCTGTCTGTGGACTGTCACTTCCCATGAAAAGGTCACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000032201.8
CDS-3UTR GCA 90 bp TCAGATATTTACAAAGAAAAGGGTTCGGAGGAGGCTTTGGTGTCGGTGGGATCATGTACTGAAGCTTGGTaGACTCAGGTCGCCGCAGGG +
Preference number: 4 (lower is better)
Translates to: SDIYKEKGSEEALVSVGSCTEAW*TQVAAG
Trigger: CCCTGCGGCGACCTGAGTGCACCAAGCTTCAGTACA...TGATCCCACCGACACCAAAGCCTCCTCCGAACCCTTTTCTTTGTAAATATCTGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088790.9
CDS-3UTR CCA 90 bp AACCTTGTTCTCTCACCTCAGTCAGTGTCAGGGAAACATCTAATGCAACTAGATCGAACACCTGCAGGGTaGCCACCACAGTGCCCTCCT +
Preference number: 4 (lower is better)
Translates to: NLVLSPQSVSGKHLMQLDRTPAG*PPQCPP
Trigger: AGGAGGGCACTGTGGTGGCCACCCTGCAGGTGTTCG...ATCTAGTTGCATTAGATGTTTCCCTGACACTGACTGAGGTGAGAGAACAAGGTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032201.8
CDS-3UTR CCA 90 bp TTTTGGCAAGAGCCGTATTTACTGTCCATTGCAAGGCCACAGCACCACAGACTAGCCCTGGCTGTCCTCTaGCTCGCAGAAGCATTTCTT +
Preference number: 4 (lower is better)
Translates to: FWQEPYLLSIARPQHHRLALAVL*LAEAFL
Trigger: AAGAAATGCTTCTGCGAGCCAGAGGACAGCCAGGGC...TAGTCTGTGGTGCTGTGGCCTTGCAATGGACAGTAAATACGGCTCTTGCCAAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088790.9
CDS-3UTR CCA 90 bp CAGCCAGGAAAATCAGACAGTTCAGGTACAATTTCTCATCCAAGTCATGAATGGCAGCGCATCACACAGTaGGCCCTGGCTGTCCTCTGG +
Preference number: 4 (lower is better)
Translates to: QPGKSDSSGTISHPSHEWQRITQ*ALAVLW
Trigger: CCAGAGGACAGCCAGGGCCCACTGTGTGATGCGCTG...CCATTCATGACTTGGATGAGAAATTGTACCTGAACTGTCTGATTTTCCTGGCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000032201.8
CDS-3UTR CCA 90 bp CATGTGGGGTCACTTCTTTCCAGTTGCCTTGTATATAGCAAAGGCAACACCAAAGGAGGAATAACTGATTaGGAAGCCCTGGGCCGGCCG +
Preference number: 4 (lower is better)
Translates to: HVGSLLSSCLVYSKGNTKGGITD*EALGRP
Trigger: CGGCCGGCCCAGGGCTTCCCAATCAGTTATTCCTCC...TTTGGTGTTGCCTTTGCTATATACAAGGCAACTGGAAAGAAGTGACCCCACATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000032201.8
CDS-3UTR CCA 90 bp GATGTGAAAGCAGCAGTCTGGTGTCTGCCCAGGGCCCACATGGTTTTCCCGCTGCAACTTGATGACATGTaGATGGTTGACTTGTTTCAG +
Preference number: 4 (lower is better)
Translates to: DVKAAVWCLPRAHMVFPLQLDDM*MVDLFQ
Trigger: CTGAAACAAGTCAACCATCCACATGTCATCAAGTTG...CAGCGGGAAAACCATGTGGGCCCTGGGCAGACACCAGACTGCTGCTTTCACATC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088790.9
CDS-3UTR CCA 90 bp TGTGACCTTTTCATGGGAAGTGACAGTCCACAGACAGCCAAAGAAACTTCCAAGAGAAGTGGCCCATCCTaGCTGCAGGCCCCATACAAC +
Preference number: 4 (lower is better)
Translates to: CDLFMGSDSPQTAKETSKRSGPS*LQAPYN
Trigger: GTTGTATGGGGCCTGCAGCCAGGATGGGCCACTTCT...CTTGGAAGTTTCTTTGGCTGTCTGTGGACTGTCACTTCCCATGAAAAGGTCACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000032201.8
CDS-3UTR CCA 90 bp AGACAAAGAAGGAGTTTTGGCAAGAGCCGTATTTACTGTCCATTGCAAGGCCACAGAAGTGGCCCATCCTaGCTGCAGGCCCCATACAAC +
Preference number: 4 (lower is better)
Translates to: RQRRSFGKSRIYCPLQGHRSGPS*LQAPYN
Trigger: GTTGTATGGGGCCTGCAGCCAGGATGGGCCACTTCT...GTGGCCTTGCAATGGACAGTAAATACGGCTCTTGCCAAAACTCCTTCTTTGTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000088790.9
CDS-3UTR TCA 90 bp AACCTTGTTCTCTCACCTCAGTCAGTGTCAGGGAAACATCTAATGCAACTAGATGGAAGTCTGAGTCGTTaGCCAGGACCGCGAGCTGCA +
Preference number: 4 (lower is better)
Translates to: NLVLSPQSVSGKHLMQLDGSLSR*PGPRAA
Trigger: TGCAGCTCGCGGTCCTGGTCAACGACTCAGACTTCC...ATCTAGTTGCATTAGATGTTTCCCTGACACTGACTGAGGTGAGAGAACAAGGTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032201.8
CDS-3UTR TCA 90 bp AGGGAGGACCACCAGCTATTTGAAGTAAAACCATTTGGAAACCAGCTAAAACAAAGGCCCCTGGAAGTCTaGGTCGTTGACCAGGACCGC +
Preference number: 4 (lower is better)
Translates to: REDHQLFEVKPFGNQLKQRPLEV*VVDQDR
Trigger: GCGGTCCTGGTCAACGACTCAGACTTCCAGGGGCCT...TTGTTTTAGCTGGTTTCCAAATGGTTTTACTTCAAATAGCTGGTGGTCCTCCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000032201.8
CDS-3UTR TCA 90 bp AGACAAAGAAGGAGTTTTGGCAAGAGCCGTATTTACTGTCCATTGCAAGGCCACGCTACCACCGTGTACTaGAGCTTGGTGCACTCAGGT +
Preference number: 4 (lower is better)
Translates to: RQRRSFGKSRIYCPLQGHATTVY*SLVHSG
Trigger: ACCTGAGTGCACCAAGCTTCAGTACACGGTGGTAGC...GTGGCCTTGCAATGGACAGTAAATACGGCTCTTGCCAAAACTCCTTCTTTGTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088790.9
CDS-3UTR GCA 90 bp ATGCTAGGCTTTCATTCTAGACAAGGACAGGTCGTTCTGGCCAGGTTTTTCAATGGAAGTGGTAGAAGGTaGCAGGAGGCCTGTTCTCCC +
Preference number: 4 (lower is better)
Translates to: MLGFHSRQGQVVLARFFNGSGRR*QEACSP
Trigger: GGGAGAACAGGCCTCCTGGCACCTTCTACCACTTCC...ATTGAAAAACCTGGCCAGAACGACCTGTCCTTGTCTAGAATGAAAGCCTAGCAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000032201.8
CDS-3UTR GCA 90 bp TGTGACCTTTTCATGGGAAGTGACAGTCCACAGACAGCCAAAGAAACTTCCAAGCTCTTGTCTGGCTCCTaGTTCCAGCACTGCAGCATC +
Preference number: 4 (lower is better)
Translates to: CDLFMGSDSPQTAKETSKLLSGS*FQHCSI
Trigger: GATGCTGCAGTGCTGGAAGCAGGAGCCAGACAAGAG...CTTGGAAGTTTCTTTGGCTGTCTGTGGACTGTCACTTCCCATGAAAAGGTCACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000032201.8
CDS-3UTR CCA 90 bp ACACTCTTTAAAAAGCGTTACAGAGAGTTGGGATGGTGCAGAGAGGACAGCGTTCATTCTCCCTCTCTCTaGGCTGTGGACCCCAGAAAG +
Preference number: 4 (lower is better)
Translates to: TLFKKRYRELGWCREDSVHSPSL*AVDPRK
Trigger: CTTTCTGGGGTCCACAGCCCAGAGAGAGGGAGAATG...AACGCTGTCCTCTCTGCACCATCCCAACTCTCTGTAACGCTTTTTAAAGAGTGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000088790.9
CDS-3UTR CCA 90 bp CAGCCAGGAAAATCAGACAGTTCAGGTACAATTTCTCATCCAAGTCATGAATGGGGACACGGCTGTCTCTaGGATGCAGAGATCCTGGGC +
Preference number: 4 (lower is better)
Translates to: QPGKSDSSGTISHPSHEWGHGCL*DAEILG
Trigger: GCCCAGGATCTCTGCATCCCAGAGACAGCCGTGTCC...CCATTCATGACTTGGATGAGAAATTGTACCTGAACTGTCTGATTTTCCTGGCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000032201.8
CDS-3UTR CCA 90 bp TGTGACCTTTTCATGGGAAGTGACAGTCCACAGACAGCCAAAGAAACTTCCAAGTCACCGTCTCTTTGTTaGCACCAGGGCCTGCCACTA +
Preference number: 4 (lower is better)
Translates to: CDLFMGSDSPQTAKETSKSPSLC*HQGLPL
Trigger: TAGTGGCAGGCCCTGGTGCCAACAAAGAGACGGTGA...CTTGGAAGTTTCTTTGGCTGTCTGTGGACTGTCACTTCCCATGAAAAGGTCACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000032201.8
CDS-3UTR CCA 90 bp ATGGGCCCTGAGAATTCTGCTCTAATCCGCTTCTCCTGTGTCATCGTAAGTTGCACACCGCTGAACTCCTaGCAGTTTTCCACACAGACT +
Preference number: 4 (lower is better)
Translates to: MGPENSALIRFSCVIVSCTPLNS*QFSTQT
Trigger: AGTCTGTGTGGAAAACTGCCAGGAGTTCAGCGGTGT...GCAACTTACGATGACACAGGAGAAGCGGATTAGAGCAGAATTCTCAGGGCCCAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088790.9
CDS-3UTR CCA 90 bp CAGCCAGGAAAATCAGACAGTTCAGGTACAATTTCTCATCCAAGTCATGAATGGGAACCTGGTTCTCCGTaGAATCCAGTGAGGGCCGGC +
Preference number: 4 (lower is better)
Translates to: QPGKSDSSGTISHPSHEWEPGSP*NPVRAG
Trigger: GCCGGCCCTCACTGGATTCCACGGAGAACCAGGTTC...CCATTCATGACTTGGATGAGAAATTGTACCTGAACTGTCTGATTTTCCTGGCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000032201.8
CDS-3UTR CCA 90 bp TTTTGGCAAGAGCCGTATTTACTGTCCATTGCAAGGCCACAGCACCACAGACTAGATGTCAGCAAACACTaGCCTCTTGTCTGGCTCCTG +
Preference number: 4 (lower is better)
Translates to: FWQEPYLLSIARPQHHRLDVSKH*PLVWLL
Trigger: CAGGAGCCAGACAAGAGGCCAGTGTTTGCTGACATC...TAGTCTGTGGTGCTGTGGCCTTGCAATGGACAGTAAATACGGCTCTTGCCAAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088790.9
CDS-3UTR TCA 90 bp CAGCCAGGAAAATCAGACAGTTCAGGTACAATTTCTCATCCAAGTCATGAATGGCCTGGAGGAAGATGGTaGGCAGGGGGAAACCACCAT +
Preference number: 4 (lower is better)
Translates to: QPGKSDSSGTISHPSHEWPGGRW*AGGNHH
Trigger: ATGGTGGTTTCCCCCTGCTCACCATCTTCCTCCAGG...CCATTCATGACTTGGATGAGAAATTGTACCTGAACTGTCTGATTTTCCTGGCTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000032201.8
CDS-3UTR TCA 90 bp GCAAAACTGACTCCCTCCCCAGATCAGGTAAATTTAAATATCGAAGTCACCAGTCCTGGAGGAAGATGGTaGGCAGGGGGAAACCACCAT +
Preference number: 4 (lower is better)
Translates to: AKLTPSPDQVNLNIEVTSPGGRW*AGGNHH
Trigger: ATGGTGGTTTCCCCCTGCTCACCATCTTCCTCCAGG...ACTGGTGACTTCGATATTTAAATTTACCTGATCTGGGGAGGGAGTCAGTTTTGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000088790.9
CDS-3UTR TCA 90 bp TTTTGGCAAGAGCCGTATTTACTGTCCATTGCAAGGCCACAGCACCACAGACTAGCAGTACAGACACGTTaGAATGGAGGACGAGGATAC +
Preference number: 4 (lower is better)
Translates to: FWQEPYLLSIARPQHHRLAVQTR*NGGRGY
Trigger: GTATCCTCGTCCTCCATTTCAACGTGTCTGTACTGC...TAGTCTGTGGTGCTGTGGCCTTGCAATGGACAGTAAATACGGCTCTTGCCAAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088790.9
CDS-3UTR TCA 90 bp CATGTGGGGTCACTTCTTTCCAGTTGCCTTGTATATAGCAAAGGCAACACCAAAGCTACCACCGTGTACTaGAGCTTGGTGCACTCAGGT +
Preference number: 4 (lower is better)
Translates to: HVGSLLSSCLVYSKGNTKATTVY*SLVHSG
Trigger: ACCTGAGTGCACCAAGCTTCAGTACACGGTGGTAGC...TTTGGTGTTGCCTTTGCTATATACAAGGCAACTGGAAAGAAGTGACCCCACATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000032201.8
CDS-3UTR TCA 90 bp CAGTCAGTGTCAGGGAAACATCTAATGCAACTAGATGAACTGTCCTTCCCTTTGGGGTGTCTCCTCTTCTaGGAGCCCATCGTCATACAG +
Preference number: 4 (lower is better)
Translates to: QSVSGKHLMQLDELSFPLGCLLF*EPIVIQ
Trigger: CTGTATGACGATGGGCTCTCAGAAGAGGAGACACCC...CAAAGGGAAGGACAGTTCATCTAGTTGCATTAGATGTTTCCCTGACACTGACTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000032201.8
CDS-3UTR GCA 90 bp TCAGATATTTACAAAGAAAAGGGTTCGGAGGAGGCTTTGGTGTCGGTGGGATCACATAGAGCAGAGGTGTaGCAGCTGGCTGGTCTACAT +
Preference number: 4 (lower is better)
Translates to: SDIYKEKGSEEALVSVGSHRAEV*QLAGLH
Trigger: ATGTAGACCAGCCAGCTGGCACACCTCTGCTCTATG...TGATCCCACCGACACCAAAGCCTCCTCCGAACCCTTTTCTTTGTAAATATCTGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088790.9
CDS-3UTR GCA 90 bp ATGCTAGGCTTTCATTCTAGACAAGGACAGGTCGTTCTGGCCAGGTTTTTCAATCAGGGCCTGCCACTATaGACAAAGCCTCCAGCACAT +
Preference number: 4 (lower is better)
Translates to: MLGFHSRQGQVVLARFFNQGLPL*TKPPAH
Trigger: ATGTGCTGGAGGCTTTGTGCATAGTGGCAGGCCCTG...ATTGAAAAACCTGGCCAGAACGACCTGTCCTTGTCTAGAATGAAAGCCTAGCAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000032201.8
CDS-3UTR GCA 90 bp AGACAAAGAAGGAGTTTTGGCAAGAGCCGTATTTACTGTCCATTGCAAGGCCACGGTACATTTCCTCGCTaGAGTTGTCTGGCCTCTCCA +
Preference number: 4 (lower is better)
Translates to: RQRRSFGKSRIYCPLQGHGTFPR*SCLASP
Trigger: TGGAGAGGCCAGACAACTGCAGCGAGGAAATGTACC...GTGGCCTTGCAATGGACAGTAAATACGGCTCTTGCCAAAACTCCTTCTTTGTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088790.9
CDS-3UTR CCA 90 bp ATGCTAGGCTTTCATTCTAGACAAGGACAGGTCGTTCTGGCCAGGTTTTTCAATGACCCCAGAAAGACCTaGAGGAAGATGGTGAGCAGG +
Preference number: 4 (lower is better)
Translates to: MLGFHSRQGQVVLARFFNDPRKT*RKMVSR
Trigger: CCTGCTCACCATCTTCCTCCAGGTCTTTCTGGGGTC...ATTGAAAAACCTGGCCAGAACGACCTGTCCTTGTCTAGAATGAAAGCCTAGCAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000032201.8
CDS-3UTR CCA 90 bp CATGTGGGGTCACTTCTTTCCAGTTGCCTTGTATATAGCAAAGGCAACACCAAAGTACAGCCTGGCCAATaGCATTCTCCCTCTCTCTGG +
Preference number: 4 (lower is better)
Translates to: HVGSLLSSCLVYSKGNTKVQPGQ*HSPSLW
Trigger: CCAGAGAGAGGGAGAATGCCATTGGCCAGGCTGTAC...TTTGGTGTTGCCTTTGCTATATACAAGGCAACTGGAAAGAAGTGACCCCACATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000032201.8
CDS-3UTR CCA 90 bp GCAAAACTGACTCCCTCCCCAGATCAGGTAAATTTAAATATCGAAGTCACCAGTCAGCTCCCCAGACGCTaGCACCACATCTGCATCGAA +
Preference number: 4 (lower is better)
Translates to: AKLTPSPDQVNLNIEVTSQLPRR*HHICIE
Trigger: TTCGATGCAGATGTGGTGCCAGCGTCTGGGGAGCTG...ACTGGTGACTTCGATATTTAAATTTACCTGATCTGGGGAGGGAGTCAGTTTTGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000088790.9
CDS-3UTR CCA 90 bp AAACTGACTCCCTCCCCAGATCAGGTAAATTTAAATATCGAAGTCACCAGTACTGAACCTGGTTCTCCGTaGAATCCAGTGAGGGCCGGC +
Preference number: 4 (lower is better)
Translates to: KLTPSPDQVNLNIEVTSTEPGSP*NPVRAG
Trigger: GCCGGCCCTCACTGGATTCCACGGAGAACCAGGTTC...AGTACTGGTGACTTCGATATTTAAATTTACCTGATCTGGGGAGGGAGTCAGTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088790.9
CDS-3UTR CCA 90 bp CTGTGTCATCGTAAGTTGCTGGGCTGTGTGGTAATGACACTTATTTTCACATCCCACAATGAGAAGAAGTaGCCCATCCTGGCTGCAGGC +
Preference number: 4 (lower is better)
Translates to: LCHRKLLGCVVMTLIFTSHNEKK*PILAAG
Trigger: GCCTGCAGCCAGGATGGGCCACTTCTTCTCATTGTG...GGATGTGAAAATAAGTGTCATTACCACACAGCCCAGCAACTTACGATGACACAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088790.9
CDS-3UTR CCA 90 bp CAGTCAGTGTCAGGGAAACATCTAATGCAACTAGATGAACTGTCCTTCCCTTTGACCCTTTCATCTGGGTaGTCCAGCGAGCTGGAGTTG +
Preference number: 4 (lower is better)
Translates to: QSVSGKHLMQLDELSFPLTLSSG*SSELEL
Trigger: CAACTCCAGCTCGCTGGACCACCCAGATGAAAGGGT...CAAAGGGAAGGACAGTTCATCTAGTTGCATTAGATGTTTCCCTGACACTGACTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032201.8
CDS-3UTR CCA 90 bp ATGCTAGGCTTTCATTCTAGACAAGGACAGGTCGTTCTGGCCAGGTTTTTCAATGTGAGTCCGAAGGTGTaGATGCAGCCAGGTCCAAGT +
Preference number: 4 (lower is better)
Translates to: MLGFHSRQGQVVLARFFNVSPKV*MQPGPS
Trigger: ACTTGGACCTGGCTGCATCCACACCTTCGGACTCAC...ATTGAAAAACCTGGCCAGAACGACCTGTCCTTGTCTAGAATGAAAGCCTAGCAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000032201.8
CDS-3UTR CCA 90 bp CATGTGGGGTCACTTCTTTCCAGTTGCCTTGTATATAGCAAAGGCAACACCAAAATCGGCTCTCGTGAGTaGTACAGGACTCTCTCCAGG +
Preference number: 4 (lower is better)
Translates to: HVGSLLSSCLVYSKGNTKIGSRE*YRTLSR
Trigger: CCTGGAGAGAGTCCTGTACCACTCACGAGAGCCGAT...TTTGGTGTTGCCTTTGCTATATACAAGGCAACTGGAAAGAAGTGACCCCACATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000032201.8
CDS-3UTR TCA 90 bp CATGTGGGGTCACTTCTTTCCAGTTGCCTTGTATATAGCAAAGGCAACACCAAACCAGTAAGCATCCCTTaGGAAATAGAGGCCCAGTGG +
Preference number: 4 (lower is better)
Translates to: HVGSLLSSCLVYSKGNTKPVSIP*EIEAQW
Trigger: CCACTGGGCCTCTATTTCTCAAGGGATGCTTACTGG...TTTGGTGTTGCCTTTGCTATATACAAGGCAACTGGAAAGAAGTGACCCCACATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000032201.8
CDS-3UTR TCA 90 bp AGAGCCGTATTTACTGTCCATTGCAAGGCCACAGCACCACAGACTATGTTCTTTTGGCATACTCCACAATaGGAAGAAGTGGCCCATCCT +
Preference number: 4 (lower is better)
Translates to: RAVFTVHCKATAPQTMFFWHTPQ*EEVAHP
Trigger: AGGATGGGCCACTTCTTCTCATTGTGGAGTATGCCA...AAAGAACATAGTCTGTGGTGCTGTGGCCTTGCAATGGACAGTAAATACGGCTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088790.9
CDS-3UTR GCA 90 bp CATGTGGGGTCACTTCTTTCCAGTTGCCTTGTATATAGCAAAGGCAACACCAAACATAGAGCAGAGGTGTaGCAGCTGGCTGGTCTACAT +
Preference number: 4 (lower is better)
Translates to: HVGSLLSSCLVYSKGNTKHRAEV*QLAGLH
Trigger: ATGTAGACCAGCCAGCTGGCACACCTCTGCTCTATG...TTTGGTGTTGCCTTTGCTATATACAAGGCAACTGGAAAGAAGTGACCCCACATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000032201.8
CDS-3UTR GCA 90 bp AGAGCTGACCCATGTGCCTTTCACACAAGCTCTATAAGAGCCAAAACCTTGTTCTCCTGCTTCCAGCACTaGAGCATCAGACGGTACATT +
Preference number: 4 (lower is better)
Translates to: RADPCAFHTSSIRAKTLFSCFQH*SIRRYI
Trigger: AATGTACCGTCTGATGCTGCAGTGCTGGAAGCAGGA...GAACAAGGTTTTGGCTCTTATAGAGCTTGTGTGAAAGGCACATGGGTCAGCTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000032201.8
CDS-3UTR CCA 90 bp CAAATGGGCCAGCTATTTAGACTTGGAGCTCAGCCCTTGAGAGCTAACTTGCCCGAAGGAGCTACAATTTaGGAAGGTGTCGTTGATGAA +
Preference number: 4 (lower is better)
Translates to: QMGQLFRLGAQPLRANLPEGATI*EGVVDE
Trigger: TTCATCAACGACACCTTCCCAAATTGTAGCTCCTTC...GGGCAAGTTAGCTCTCAAGGGCTGAGCTCCAAGTCTAAATAGCTGGCCCATTTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032201.8
CDS-3UTR CCA 90 bp AACCTTGTTCTCTCACCTCAGTCAGTGTCAGGGAAACATCTAATGCAACTAGATGCCCTGGCTGTCCTCTaGCTCGCAGAAGCATTTCTT +
Preference number: 4 (lower is better)
Translates to: NLVLSPQSVSGKHLMQLDALAVL*LAEAFL
Trigger: AAGAAATGCTTCTGCGAGCCAGAGGACAGCCAGGGC...ATCTAGTTGCATTAGATGTTTCCCTGACACTGACTGAGGTGAGAGAACAAGGTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032201.8
CDS-3UTR CCA 90 bp CATGTGGGGTCACTTCTTTCCAGTTGCCTTGTATATAGCAAAGGCAACACCAAATTGTGCCCATGCTTGTaGTGGTGGCAGACACAGAAG +
Preference number: 4 (lower is better)
Translates to: HVGSLLSSCLVYSKGNTKLCPCL*WWQTQK
Trigger: CTTCTGTGTCTGCCACCACCACAAGCATGGGCACAA...TTTGGTGTTGCCTTTGCTATATACAAGGCAACTGGAAAGAAGTGACCCCACATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000032201.8
CDS-3UTR CCA 90 bp AATTCTGCTCTAATCCGCTTCTCCTGTGTCATCGTAAGTTGCTGGGCTGTGTGGAGGAAATTCCCACTTTaGATCCTCCGGGATCTTGAA +
Preference number: 4 (lower is better)
Translates to: NSALIRFSCVIVSCWAVWRKFPL*ILRDLE
Trigger: TTCAAGATCCCGGAGGATCCAAAGTGGGAATTTCCT...CCACACAGCCCAGCAACTTACGATGACACAGGAGAAGCGGATTAGAGCAGAATT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088790.9
CDS-3UTR CCA 90 bp AACCTTGTTCTCTCACCTCAGTCAGTGTCAGGGAAACATCTAATGCAACTAGATCACAATGAGAAGAAGTaGCCCATCCTGGCTGCAGGC +
Preference number: 4 (lower is better)
Translates to: NLVLSPQSVSGKHLMQLDHNEKK*PILAAG
Trigger: GCCTGCAGCCAGGATGGGCCACTTCTTCTCATTGTG...ATCTAGTTGCATTAGATGTTTCCCTGACACTGACTGAGGTGAGAGAACAAGGTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032201.8
CDS-3UTR CCA 90 bp CATGTGGGGTCACTTCTTTCCAGTTGCCTTGTATATAGCAAAGGCAACACCAAAGATGTCAGCAAACACTaGCCTCTTGTCTGGCTCCTG +
Preference number: 4 (lower is better)
Translates to: HVGSLLSSCLVYSKGNTKDVSKH*PLVWLL
Trigger: CAGGAGCCAGACAAGAGGCCAGTGTTTGCTGACATC...TTTGGTGTTGCCTTTGCTATATACAAGGCAACTGGAAAGAAGTGACCCCACATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000032201.8
CDS-3UTR TCA 90 bp AGGGAGGACCACCAGCTATTTGAAGTAAAACCATTTGGAAACCAGCTAAAACAAGAAGGTCATTTCCGCTaGTGCAATGGGCGGCTTGTG +
Preference number: 4 (lower is better)
Translates to: REDHQLFEVKPFGNQLKQEGHFR*CNGRLV
Trigger: CACAAGCCGCCCATTGCATCAGCGGAAATGACCTTC...TTGTTTTAGCTGGTTTCCAAATGGTTTTACTTCAAATAGCTGGTGGTCCTCCCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000032201.8
CDS-3UTR TCA 90 bp CAGCCAGGAAAATCAGACAGTTCAGGTACAATTTCTCATCCAAGTCATGAATGGGGAAGGCTGTGGCCTTaGCAACTTTTCCAAACTCGC +
Preference number: 4 (lower is better)
Translates to: QPGKSDSSGTISHPSHEWGRLWP*QLFQTR
Trigger: GCGAGTTTGGAAAAGTTGTCAAGGCCACAGCCTTCC...CCATTCATGACTTGGATGAGAAATTGTACCTGAACTGTCTGATTTTCCTGGCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000032201.8
CDS-3UTR GCA 90 bp AACCTTGTTCTCTCACCTCAGTCAGTGTCAGGGAAACATCTAATGCAACTAGATGGTACATTTCCTCGCTaGAGTTGTCTGGCCTCTCCA +
Preference number: 4 (lower is better)
Translates to: NLVLSPQSVSGKHLMQLDGTFPR*SCLASP
Trigger: TGGAGAGGCCAGACAACTGCAGCGAGGAAATGTACC...ATCTAGTTGCATTAGATGTTTCCCTGACACTGACTGAGGTGAGAGAACAAGGTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032201.8
CDS-3UTR CCA 90 bp AGGGAGGACCACCAGCTATTTGAAGTAAAACCATTTGGAAACCAGCTAAAACAACATTCTCCCTCTCTCTaGGCTGTGGACCCCAGAAAG +
Preference number: 4 (lower is better)
Translates to: REDHQLFEVKPFGNQLKQHSPSL*AVDPRK
Trigger: CTTTCTGGGGTCCACAGCCCAGAGAGAGGGAGAATG...TTGTTTTAGCTGGTTTCCAAATGGTTTTACTTCAAATAGCTGGTGGTCCTCCCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000032201.8
CDS-3UTR CCA 90 bp ATGCTAGGCTTTCATTCTAGACAAGGACAGGTCGTTCTGGCCAGGTTTTTCAATGGGATGCAGAGATCCTaGGCTTTGAAGGAGCTACAA +
Preference number: 4 (lower is better)
Translates to: MLGFHSRQGQVVLARFFNGMQRS*ALKELQ
Trigger: TTGTAGCTCCTTCAAAGCCCAGGATCTCTGCATCCC...ATTGAAAAACCTGGCCAGAACGACCTGTCCTTGTCTAGAATGAAAGCCTAGCAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000032201.8
CDS-3UTR CCA 90 bp CTGTGTCATCGTAAGTTGCTGGGCTGTGTGGTAATGACACTTATTTTCACATCCGGGATGCAGAGATCCTaGGCTTTGAAGGAGCTACAA +
Preference number: 4 (lower is better)
Translates to: LCHRKLLGCVVMTLIFTSGMQRS*ALKELQ
Trigger: TTGTAGCTCCTTCAAAGCCCAGGATCTCTGCATCCC...GGATGTGAAAATAAGTGTCATTACCACACAGCCCAGCAACTTACGATGACACAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088790.9
CDS-3UTR CCA 90 bp AGACAAAGAAGGAGTTTTGGCAAGAGCCGTATTTACTGTCCATTGCAAGGCCACATCATACACTGTCACTaGGAAGGACAGAGTCACCGT +
Preference number: 4 (lower is better)
Translates to: RQRRSFGKSRIYCPLQGHIIHCH*EGQSHR
Trigger: ACGGTGACTCTGTCCTTCCCAGTGACAGTGTATGAT...GTGGCCTTGCAATGGACAGTAAATACGGCTCTTGCCAAAACTCCTTCTTTGTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088790.9
CDS-3UTR CCA 90 bp CAGTCAGTGTCAGGGAAACATCTAATGCAACTAGATGAACTGTCCTTCCCTTTGACACCGCTGAACTCCTaGCAGTTTTCCACACAGACT +
Preference number: 4 (lower is better)
Translates to: QSVSGKHLMQLDELSFPLTPLNS*QFSTQT
Trigger: AGTCTGTGTGGAAAACTGCCAGGAGTTCAGCGGTGT...CAAAGGGAAGGACAGTTCATCTAGTTGCATTAGATGTTTCCCTGACACTGACTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000032201.8
CDS-3UTR CCA 90 bp TCAGATATTTACAAAGAAAAGGGTTCGGAGGAGGCTTTGGTGTCGGTGGGATCATCTCGTAACTCACTCTaGGAGGCGTTTTCTTTCAGC +
Preference number: 4 (lower is better)
Translates to: SDIYKEKGSEEALVSVGSSRNSL*EAFSFS
Trigger: GCTGAAAGAAAACGCCTCCCAGAGTGAGTTACGAGA...TGATCCCACCGACACCAAAGCCTCCTCCGAACCCTTTTCTTTGTAAATATCTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000088790.9
CDS-3UTR TCA 90 bp AACCTTGTTCTCTCACCTCAGTCAGTGTCAGGGAAACATCTAATGCAACTAGATAGGCCAGTTCGGGTCTaGCATGCCATAGAGTTTGTT +
Preference number: 4 (lower is better)
Translates to: NLVLSPQSVSGKHLMQLDRPVRV*HAIEFV
Trigger: AACAAACTCTATGGCATGTCAGACCCGAACTGGCCT...ATCTAGTTGCATTAGATGTTTCCCTGACACTGACTGAGGTGAGAGAACAAGGTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032201.8
CDS-3UTR GCA 90 bp CATGTGGGGTCACTTCTTTCCAGTTGCCTTGTATATAGCAAAGGCAACACCAAATTGGGACAAAGGAACTaGACGGGTAACATGTGGAAG +
Preference number: 4 (lower is better)
Translates to: HVGSLLSSCLVYSKGNTKLGQRN*TGNMWK
Trigger: CTTCCACATGTTACCCGTGCAGTTCCTTTGTCCCAA...TTTGGTGTTGCCTTTGCTATATACAAGGCAACTGGAAAGAAGTGACCCCACATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000032201.8
CDS-3UTR GCA 90 bp AAAGACATAGCTGCAAAATGCCTGAATGTATGTAAACTAGATGCAAAGTCAGATAGCTGGAGTTGCGGCTaGCTCCACCGCTCACATAGG +
Preference number: 4 (lower is better)
Translates to: KDIAAKCLNVCKLDAKSDSWSCG*LHRSHR
Trigger: CCTATGTGAGCGGTGGAGGCAGCCGCAACTCCAGCT...ATCTGACTTTGCATCTAGTTTACATACATTCAGGCATTTTGCAGCTATGTCTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088790.9
CDS-3UTR CCA 90 bp ATGCTAGGCTTTCATTCTAGACAAGGACAGGTCGTTCTGGCCAGGTTTTTCAATATCATACACTGTCACTaGGAAGGACAGAGTCACCGT +
Preference number: 4 (lower is better)
Translates to: MLGFHSRQGQVVLARFFNIIHCH*EGQSHR
Trigger: ACGGTGACTCTGTCCTTCCCAGTGACAGTGTATGAT...ATTGAAAAACCTGGCCAGAACGACCTGTCCTTGTCTAGAATGAAAGCCTAGCAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000032201.8
CDS-3UTR CCA 90 bp AAACTGACTCCCTCCCCAGATCAGGTAAATTTAAATATCGAAGTCACCAGTACTTTGTGCCCATGCTTGTaGTGGTGGCAGACACAGAAG +
Preference number: 4 (lower is better)
Translates to: KLTPSPDQVNLNIEVTSTLCPCL*WWQTQK
Trigger: CTTCTGTGTCTGCCACCACCACAAGCATGGGCACAA...AGTACTGGTGACTTCGATATTTAAATTTACCTGATCTGGGGAGGGAGTCAGTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088790.9
CDS-3UTR CCA 90 bp ATGCTAGGCTTTCATTCTAGACAAGGACAGGTCGTTCTGGCCAGGTTTTTCAATTCTCGTAACTCACTCTaGGAGGCGTTTTCTTTCAGC +
Preference number: 4 (lower is better)
Translates to: MLGFHSRQGQVVLARFFNSRNSL*EAFSFS
Trigger: GCTGAAAGAAAACGCCTCCCAGAGTGAGTTACGAGA...ATTGAAAAACCTGGCCAGAACGACCTGTCCTTGTCTAGAATGAAAGCCTAGCAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000032201.8
3UTR CAA 72 bp TGTGCCTTTCACACAAGCTCTATAAGAGCCAAAACCTaGTTCTCTCACCTCAGTCAGTGTCAGGGAAACATC +
Preference number: 4 (lower is better)
Translates to: CAFHTSSIRAKT*FSHLSQCQGNI
Trigger: GATGTTTCCCTGACACTGACTGAGGTGAGAGAACAAGGTTTTGGCTCTTATAGAGCTTGTGTGAAAGGCACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000032201.8
CDS-3UTR TCA 90 bp ATGCTAGGCTTTCATTCTAGACAAGGACAGGTCGTTCTGGCCAGGTTTTTCAATGACTGTACTTCACACTaGTGTTGGGACAAAGGAACT +
Preference number: 4 (lower is better)
Translates to: MLGFHSRQGQVVLARFFNDCTSH*CWDKGT
Trigger: AGTTCCTTTGTCCCAACATCAGTGTGAAGTACAGTC...ATTGAAAAACCTGGCCAGAACGACCTGTCCTTGTCTAGAATGAAAGCCTAGCAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000032201.8
CDS-3UTR TCA 90 bp AACCTTGTTCTCTCACCTCAGTCAGTGTCAGGGAAACATCTAATGCAACTAGATCTTGTTTCAGAAGGTTaGACTCAGACAGCAGGTCTC +
Preference number: 4 (lower is better)
Translates to: NLVLSPQSVSGKHLMQLDLVSEG*TQTAGL
Trigger: GAGACCTGCTGTCTGAGTTCAACCTTCTGAAACAAG...ATCTAGTTGCATTAGATGTTTCCCTGACACTGACTGAGGTGAGAGAACAAGGTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032201.8
CDS-3UTR TCA 90 bp AGGGAGGACCACCAGCTATTTGAAGTAAAACCATTTGGAAACCAGCTAAAACAATGGCATACTCCACAATaGGAAGAAGTGGCCCATCCT +
Preference number: 4 (lower is better)
Translates to: REDHQLFEVKPFGNQLKQWHTPQ*EEVAHP
Trigger: AGGATGGGCCACTTCTTCTCATTGTGGAGTATGCCA...TTGTTTTAGCTGGTTTCCAAATGGTTTTACTTCAAATAGCTGGTGGTCCTCCCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000032201.8
CDS-3UTR GCA 90 bp AAACTGACTCCCTCCCCAGATCAGGTAAATTTAAATATCGAAGTCACCAGTACTTTGATGCTGGAAGGCTaGAGCTTGTACTGGATGGAG +
Preference number: 4 (lower is better)
Translates to: KLTPSPDQVNLNIEVTSTLMLEG*SLYWME
Trigger: CTCCATCCAGTACAAGCTGCAGCCTTCCAGCATCAA...AGTACTGGTGACTTCGATATTTAAATTTACCTGATCTGGGGAGGGAGTCAGTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088790.9
CDS-3UTR CCA 90 bp ACACTCTTTAAAAAGCGTTACAGAGAGTTGGGATGGTGCAGAGAGGACAGCGTTGAAGGAGCTACAATTTaGGAAGGTGTCGTTGATGAA +
Preference number: 4 (lower is better)
Translates to: TLFKKRYRELGWCREDSVEGATI*EGVVDE
Trigger: TTCATCAACGACACCTTCCCAAATTGTAGCTCCTTC...AACGCTGTCCTCTCTGCACCATCCCAACTCTCTGTAACGCTTTTTAAAGAGTGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000088790.9
CDS-3UTR CCA 90 bp CATGTGGGGTCACTTCTTTCCAGTTGCCTTGTATATAGCAAAGGCAACACCAAAAGGAAATTCCCACTTTaGATCCTCCGGGATCTTGAA +
Preference number: 4 (lower is better)
Translates to: HVGSLLSSCLVYSKGNTKRKFPL*ILRDLE
Trigger: TTCAAGATCCCGGAGGATCCAAAGTGGGAATTTCCT...TTTGGTGTTGCCTTTGCTATATACAAGGCAACTGGAAAGAAGTGACCCCACATG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000032201.8
3UTR CAA 72 bp TTCTGCTCTAATCCGCTTCTCCTGTGTCATCGTAAGTaGCTGGGCTGTGTGGTAATGACACTTATTTTCACA +
Preference number: 4 (lower is better)
Translates to: FCSNPLLLCHRK*LGCVVMTLIFT
Trigger: TGTGAAAATAAGTGTCATTACCACACAGCCCAGCAACTTACGATGACACAGGAGAAGCGGATTAGAGCAGAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088790.9
CDS-3UTR TCA 90 bp AGGGAGGACCACCAGCTATTTGAAGTAAAACCATTTGGAAACCAGCTAAAACAACTGTCTTCAGAAGGTTaGAGAGTCGTTCAGGAGGAA +
Preference number: 4 (lower is better)
Translates to: REDHQLFEVKPFGNQLKQLSSEG*RVVQEE
Trigger: TTCCTCCTGAACGACTCTTCAACCTTCTGAAGACAG...TTGTTTTAGCTGGTTTCCAAATGGTTTTACTTCAAATAGCTGGTGGTCCTCCCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000032201.8
CDS-3UTR CCA 90 bp AGAGCTGACCCATGTGCCTTTCACACAAGCTCTATAAGAGCCAAAACCTTGTTCCAACTTGATGACATGTaGATGGTTGACTTGTTTCAG +
Preference number: 4 (lower is better)
Translates to: RADPCAFHTSSIRAKTLFQLDDM*MVDLFQ
Trigger: CTGAAACAAGTCAACCATCCACATGTCATCAAGTTG...GAACAAGGTTTTGGCTCTTATAGAGCTTGTGTGAAAGGCACATGGGTCAGCTCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000032201.8
3UTR CAA 72 bp TCAGATATTTACAAAGAAAAGGGTTCGGAGGAGGCTTaGGTGTCGGTGGGATCAGAAACACTCTTTAAAAAG +
Preference number: 4 (lower is better)
Translates to: SDIYKEKGSEEA*VSVGSETLFKK
Trigger: CTTTTTAAAGAGTGTTTCTGATCCCACCGACACCAAAGCCTCCTCCGAACCCTTTTCTTTGTAAATATCTGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000088790.9
CDS-3UTR GCA 90 bp AACCTTGTTCTCTCACCTCAGTCAGTGTCAGGGAAACATCTAATGCAACTAGATATATACACTATCATTTaGATATCTTGGGAACCCAGT +
Preference number: 4 (lower is better)
Translates to: NLVLSPQSVSGKHLMQLDIYTII*ISWEPS
Trigger: ACTGGGTTCCCAAGATATGCAAATGATAGTGTATAT...ATCTAGTTGCATTAGATGTTTCCCTGACACTGACTGAGGTGAGAGAACAAGGTT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032201.8
3UTR CAA 72 bp CTTGCCCTAGCAAGTCACACTTACCGTGTAGGCATGTaGAATAATTTGAATTCATCCGTATTTTTGCACTTA +
Preference number: 4 (lower is better)
Translates to: LALASHTYRVGM*NNLNSSVFLHL
Trigger: TAAGTGCAAAAATACGGATGAATTCAAATTATTCAACATGCCTACACGGTAAGTGTGACTTGCTAGGGCAAG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000032201.8
CDS TCA 90 bp GGGCGAATGCTCCACCCGGAAGGTCTGCTGGGCCCAGGAGTCCCCTaGGAGGAGTGTGTTTGTGTACCGTCTCACCAGCTCCCCAGACGC +
Preference number: 5 (lower is better)
Translates to: GRMLHPEGLLGPGVP*EECVCVPSHQLPRR
Trigger: GCGTCTGGGGAGCTGGTGAGACGGTACACAAACACACTCCTCTCAGGGGACTCCTGGGCCCAGCAGACCTTCCGGGTGGAGCATTCGCCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032201.8
ENSMUST00000088790.9
CDS TCA 90 bp CCGTGGAATCCAGTGAGGGCCGGCGGGTGCCTGAGGAGGAATAACTaGTTGGGAAGCCCTGGGCCGGCCGGCAGAAGGTCATTTCCGCTG +
Preference number: 5 (lower is better)
Translates to: PWNPVRAGGCLRRNN*LGSPGPAGRRSFPL
Trigger: CAGCGGAAATGACCTTCTGCCGGCCGGCCCAGGGCTTCCCAATCAGTTATTCCTCCTCAGGCACCCGCCGGCCCTCACTGGATTCCACGG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032201.8
ENSMUST00000088790.9
CDS CCA 90 bp GTCCTCCAACAATGTCGGCACGGAGACAGTCCTGGGGGCAAATGTTaGCATCCCGGCTCTCCACAGCATCACAGTGGCCGTCGGGGCAGG +
Preference number: 5 (lower is better)
Translates to: VLQQCRHGDSPGGKC*HPGSPQHHSGRRGR
Trigger: CCTGCCCCGACGGCCACTGTGATGCTGTGGAGAGCCGGGATGCCAACATTTGCCCCCAGGACTGTCTCCGTGCCGACATTGTTGGAGGAC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000032201.8
ENSMUST00000088790.9
CDS-3UTR CAA 90 bp AGCAGCAGTCTGGTGTCTGCCCAGGGCCCACATGGTTTTCCCGCTGCCCCACACGGCTTGTGCCCATGCTaGTGGTGGTGGCAGACACAG +
Preference number: 5 (lower is better)
Translates to: SSSLVSAQGPHGFPAAPHGLCPC*WWWQTQ
Trigger: CTGTGTCTGCCACCACCACAAGCATGGGCACAAGCC...GTGTGGGGCAGCGGGAAAACCATGTGGGCCCTGGGCAGACACCAGACTGCTGCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000088790.9
CDS TCA 90 bp ACTGATTGGGAAGCCCTGGGCCGGCCGGCAGAAGGTCATTTCCGCTaGTGCAATGGGCGGCTTGTGCCCATGCTTGTGGTGGTGGCAGAC +
Preference number: 5 (lower is better)
Translates to: TDWEALGRPAEGHFR*CNGRLVPMLVVVAD
Trigger: GTCTGCCACCACCACAAGCATGGGCACAAGCCGCCCATTGCATCAGCGGAAATGACCTTCTGCCGGCCGGCCCAGGGCTTCCCAATCAGT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032201.8
ENSMUST00000088790.9
CDS GCA 90 bp GTTTGTGTACCGTCTCACCAGCTCCCCAGACGCTGGCACCACATCTaGATCGAACACCTGCAGGGTGGCCACCACAGTGCCCTCCTTCCG +
Preference number: 5 (lower is better)
Translates to: VCVPSHQLPRRWHHI*IEHLQGGHHSALLP
Trigger: CGGAAGGAGGGCACTGTGGTGGCCACCCTGCAGGTGTTCGATGCAGATGTGGTGCCAGCGTCTGGGGAGCTGGTGAGACGGTACACAAAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032201.8
ENSMUST00000088790.9
CDS GCA 90 bp CGAACGGAGTTGTTGTTGACCTGGACCAAGGTCTCGATGGGCGAATaGTCCACCCGGAAGGTCTGCTGGGCCCAGGAGTCCCCTGAGAGG +
Preference number: 5 (lower is better)
Translates to: RTELLLTWTKVSMGE*STRKVCWAQESPER
Trigger: CCTCTCAGGGGACTCCTGGGCCCAGCAGACCTTCCGGGTGGAGCATTCGCCCATCGAGACCTTGGTCCAGGTCAACAACAACTCCGTTCG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032201.8
ENSMUST00000088790.9
CDS GCA 90 bp TGGAGTTGCGGCTGCCTCCACCGCTCACATAGGCAGGCCCAATCTTaGGGCTGTCACGGAGGAATCCCCGCAGGGAGCCATACTTGGCAT +
Preference number: 5 (lower is better)
Translates to: WSCGCLHRSHRQAQS*GCHGGIPAGSHTWH
Trigger: ATGCCAAGTATGGCTCCCTGCGGGGATTCCTCCGTGACAGCCGCAAGATTGGGCCTGCCTATGTGAGCGGTGGAGGCAGCCGCAACTCCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032201.8
ENSMUST00000088790.9
CDS GCA 90 bp CCATGGTCAGTACCCTTTCATCTGGGTGGTCCAGCGAGCTGGAGTTaGGGCTGCCTCCACCGCTCACATAGGCAGGCCCAATCTTGCGGC +
Preference number: 5 (lower is better)
Translates to: PWSVPFHLGGPASWS*GCLHRSHRQAQSCG
Trigger: GCCGCAAGATTGGGCCTGCCTATGTGAGCGGTGGAGGCAGCCGCAACTCCAGCTCGCTGGACCACCCAGATGAAAGGGTACTGACCATGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032201.8
ENSMUST00000088790.9
CDS CCA 90 bp CCAGGCGAAGGAGATGAGGTCACCCATGGTCAGTACCCTTTCATCTaGGTGGTCCAGCGAGCTGGAGTTGCGGCTGCCTCCACCGCTCAC +
Preference number: 5 (lower is better)
Translates to: PGEGDEVTHGQYPFI*VVQRAGVAAASTAH
Trigger: GTGAGCGGTGGAGGCAGCCGCAACTCCAGCTCGCTGGACCACCCAGATGAAAGGGTACTGACCATGGGTGACCTCATCTCCTTCGCCTGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032201.8
ENSMUST00000088790.9
CDS-3UTR CAA 90 bp AGCAGCAGTCTGGTGTCTGCCCAGGGCCCACATGGTTTTCCCGCTGCCCCACACCTGGAAGGCTGCAGCTaGTACTGGATGGAGACACCG +
Preference number: 5 (lower is better)
Translates to: SSSLVSAQGPHGFPAAPHLEGCS*YWMETP
Trigger: CGGTGTCTCCATCCAGTACAAGCTGCAGCCTTCCAG...GTGTGGGGCAGCGGGAAAACCATGTGGGCCCTGGGCAGACACCAGACTGCTGCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000088790.9
CDS TCA 90 bp TGGGTCTGTCTGCGGGTCTGCCGGTCAGTGGCTACCACCGTGTACTaGAGCTTGGTGCACTCAGGTCGCCGCAGGGCCTCTGTGTCATTT +
Preference number: 5 (lower is better)
Translates to: WVCLRVCRSVATTVY*SLVHSGRRRASVSF
Trigger: AAATGACACAGAGGCCCTGCGGCGACCTGAGTGCACCAAGCTTCAGTACACGGTGGTAGCCACTGACCGGCAGACCCGCAGACAGACCCA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032201.8
ENSMUST00000088790.9
CDS GCA 90 bp CCAGCACATACTTCTCCCGGAGCTCTCGATCCAGGGCCCAGCGAGTaGTCACCTCCAGGCAGTCTGGGTCACAACGGAAGGGCAGACTAT +
Preference number: 5 (lower is better)
Translates to: PAHTSPGALDPGPSE*SPPGSLGHNGRADY
Trigger: ATAGTCTGCCCTTCCGTTGTGACCCAGACTGCCTGGAGGTGAGCACTCGCTGGGCCCTGGATCGAGAGCTCCGGGAGAAGTATGTGCTGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032201.8
ENSMUST00000088790.9
CDS GCA 90 bp ACCTGGACCAAGGTCTCGATGGGCGAATGCTCCACCCGGAAGGTCTaGTGGGCCCAGGAGTCCCCTGAGAGGAGTGTGTTTGTGTACCGT +
Preference number: 5 (lower is better)
Translates to: TWTKVSMGECSTRKV*WAQESPERSVFVYR
Trigger: ACGGTACACAAACACACTCCTCTCAGGGGACTCCTGGGCCCAGCAGACCTTCCGGGTGGAGCATTCGCCCATCGAGACCTTGGTCCAGGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032201.8
ENSMUST00000088790.9
CDS GCA 90 bp GCCCCAGGCCCCTGGAAGTCTGAGTCGTTGACCAGGACCGCGAGCTaGAGGACTCGGCTCTCTGAGATAGACAGGCTCCTGTTGAGAATC +
Preference number: 5 (lower is better)
Translates to: APGPWKSESLTRTAS*RTRLSEIDRLLLRI
Trigger: GATTCTCAACAGGAGCCTGTCTATCTCAGAGAGCCGAGTCCTGCAGCTCGCGGTCCTGGTCAACGACTCAGACTTCCAGGGGCCTGGGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032201.8
ENSMUST00000088790.9
CDS GCA 90 bp TCAGTACCCTTTCATCTGGGTGGTCCAGCGAGCTGGAGTTGCGGCTaGCTCCACCGCTCACATAGGCAGGCCCAATCTTGCGGCTGTCAC +
Preference number: 5 (lower is better)
Translates to: SVPFHLGGPASWSCG*LHRSHRQAQSCGCH
Trigger: GTGACAGCCGCAAGATTGGGCCTGCCTATGTGAGCGGTGGAGGCAGCCGCAACTCCAGCTCGCTGGACCACCCAGATGAAAGGGTACTGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032201.8
ENSMUST00000088790.9
CDS CCA 90 bp TGGACCAAGGTCTCGATGGGCGAATGCTCCACCCGGAAGGTCTGCTaGGCCCAGGAGTCCCCTGAGAGGAGTGTGTTTGTGTACCGTCTC +
Preference number: 5 (lower is better)
Translates to: WTKVSMGECSTRKVC*AQESPERSVFVYRL
Trigger: GAGACGGTACACAAACACACTCCTCTCAGGGGACTCCTGGGCCCAGCAGACCTTCCGGGTGGAGCATTCGCCCATCGAGACCTTGGTCCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032201.8
ENSMUST00000088790.9
CDS CCA 90 bp TCCCCTCGCTCGTGTCCTCCAACAATGTCGGCACGGAGACAGTCCTaGGGGCAAATGTTGGCATCCCGGCTCTCCACAGCATCACAGTGG +
Preference number: 5 (lower is better)
Translates to: SPRSCPPTMSARRQS*GQMLASRLSTASQW
Trigger: CCACTGTGATGCTGTGGAGAGCCGGGATGCCAACATTTGCCCCCAGGACTGTCTCCGTGCCGACATTGTTGGAGGACACGAGCGAGGGGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032201.8
ENSMUST00000088790.9
CDS CCA 90 bp GGTCACCCATGGTCAGTACCCTTTCATCTGGGTGGTCCAGCGAGCTaGAGTTGCGGCTGCCTCCACCGCTCACATAGGCAGGCCCAATCT +
Preference number: 5 (lower is better)
Translates to: GHPWSVPFHLGGPAS*SCGCLHRSHRQAQS
Trigger: AGATTGGGCCTGCCTATGTGAGCGGTGGAGGCAGCCGCAACTCCAGCTCGCTGGACCACCCAGATGAAAGGGTACTGACCATGGGTGACC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032201.8
ENSMUST00000088790.9
CDS-3UTR CAA 90 bp GAAAGCAGCAGTCTGGTGTCTGCCCAGGGCCCACATGGTTTTCCCGCTGCCCCAGCAAACACTGGCCTCTaGTCTGGCTCCTGCTTCCAG +
Preference number: 5 (lower is better)
Translates to: ESSSLVSAQGPHGFPAAPANTGL*SGSCFQ
Trigger: CTGGAAGCAGGAGCCAGACAAGAGGCCAGTGTTTGC...TGGGGCAGCGGGAAAACCATGTGGGCCCTGGGCAGACACCAGACTGCTGCTTTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000088790.9
CDS CCA 90 bp TCCCACTTTGGATCCTCCGGGATCTTGAAAGAGTCCACAGGAACCTaGTTCTCCGTGGAATCCAGTGAGGGCCGGCGGGTGCCTGAGGAG +
Preference number: 5 (lower is better)
Translates to: SHFGSSGILKESTGT*FSVESSEGRRVPEE
Trigger: CTCCTCAGGCACCCGCCGGCCCTCACTGGATTCCACGGAGAACCAGGTTCCTGTGGACTCTTTCAAGATCCCGGAGGATCCAAAGTGGGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032201.8
ENSMUST00000088790.9
CDS-3UTR CAA 90 bp GGGTGCAAAGGATGTGAAAGCAGCAGTCTGGTGTCTGCCCAGGGCCCACATGGTAGAGTCACCGTCTCTTaGTTGGCACCAGGGCCTGCC +
Preference number: 5 (lower is better)
Translates to: GCKGCESSSLVSAQGPHGRVTVS*LAPGPA
Trigger: GGCAGGCCCTGGTGCCAACAAAGAGACGGTGACTCT...ACCATGTGGGCCCTGGGCAGACACCAGACTGCTGCTTTCACATCCTTTGCACCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088790.9
CDS GCA 90 bp CTTCTCCAGGGGCATCCCGTAGGGCATGGACATAGAGCAGAGGTGTaGCAGCTGGCTGGTCTACATACAGCCTCTCCCAGTAAGCATCCC +
Preference number: 5 (lower is better)
Translates to: LLQGHPVGHGHRAEV*QLAGLHTASPSKHP
Trigger: GGGATGCTTACTGGGAGAGGCTGTATGTAGACCAGCCAGCTGGCACACCTCTGCTCTATGTCCATGCCCTACGGGATGCCCCTGGAGAAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032201.8
ENSMUST00000088790.9
CDS GCA 90 bp TGCGGGTCTGCCGGTCAGTGGCTACCACCGTGTACTGAAGCTTGGTaGACTCAGGTCGCCGCAGGGCCTCTGTGTCATTTACAAATAGGG +
Preference number: 5 (lower is better)
Translates to: CGSAGQWLPPCTEAW*TQVAAGPLCHLQIG
Trigger: CCCTATTTGTAAATGACACAGAGGCCCTGCGGCGACCTGAGTGCACCAAGCTTCAGTACACGGTGGTAGCCACTGACCGGCAGACCCGCA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032201.8
ENSMUST00000088790.9
CDS CCA 90 bp TCCAGAGAAGGTGGGCGCCGAGTCGTCCTCATCATACACTGTCACTaGGAAGGACAGAGTCACCGTCTCTTTGTTGGCACCAGGGCCTGC +
Preference number: 5 (lower is better)
Translates to: SREGGRRVVLIIHCH*EGQSHRLFVGTRAC
Trigger: GCAGGCCCTGGTGCCAACAAAGAGACGGTGACTCTGTCCTTCCCAGTGACAGTGTATGATGAGGACGACTCGGCGCCCACCTTCTCTGGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032201.8
ENSMUST00000088790.9
CDS TCA 90 bp CTGCCAAGTACTGCATACCCCTCGAGATCTGCCAGGCGAAGGAGATaGGGTCACCCATGGTCAGTACCCTTTCATCTGGGTGGTCCAGCG +
Preference number: 5 (lower is better)
Translates to: LPSTAYPSRSARRRR*GHPWSVPFHLGGPA
Trigger: CGCTGGACCACCCAGATGAAAGGGTACTGACCATGGGTGACCTCATCTCCTTCGCCTGGCAGATCTCGAGGGGTATGCAGTACTTGGCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032201.8
ENSMUST00000088790.9
CDS GCA 90 bp CACTGGGAAGGACAGAGTCACCGTCTCTTTGTTGGCACCAGGGCCTaGCACTATGCACAAAGCCTCCAGCACATACTTCTCCCGGAGCTC +
Preference number: 5 (lower is better)
Translates to: HWEGQSHRLFVGTRA*HYAQSLQHILLPEL
Trigger: GAGCTCCGGGAGAAGTATGTGCTGGAGGCTTTGTGCATAGTGGCAGGCCCTGGTGCCAACAAAGAGACGGTGACTCTGTCCTTCCCAGTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032201.8
ENSMUST00000088790.9
CDS CCA 90 bp CAATGGCATTCTCCCTCTCTCTGGGCTGTGGACCCCAGAAAGACCTaGAGGAAGATGGTGAGCAGGGGGAAACCACCATTGCGGATGCTG +
Preference number: 5 (lower is better)
Translates to: QWHSPSLWAVDPRKT*RKMVSRGKPPLRML
Trigger: CAGCATCCGCAATGGTGGTTTCCCCCTGCTCACCATCTTCCTCCAGGTCTTTCTGGGGTCCACAGCCCAGAGAGAGGGAGAATGCCATTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000032201.8
ENSMUST00000088790.9
CDS CCA 90 bp AAGTACACACGGGTACAGCCTGGCCAATGGCATTCTCCCTCTCTCTaGGCTGTGGACCCCAGAAAGACCTGGAGGAAGATGGTGAGCAGG +
Preference number: 5 (lower is better)
Translates to: KYTRVQPGQWHSPSL*AVDPRKTWRKMVSR
Trigger: CCTGCTCACCATCTTCCTCCAGGTCTTTCTGGGGTCCACAGCCCAGAGAGAGGGAGAATGCCATTGGCCAGGCTGTACCCGTGTGTACTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032201.8
ENSMUST00000088790.9
CDS CCA 90 bp GTCTGCGGGTCTGCCGGTCAGTGGCTACCACCGTGTACTGAAGCTTaGTGCACTCAGGTCGCCGCAGGGCCTCTGTGTCATTTACAAATA +
Preference number: 5 (lower is better)
Translates to: VCGSAGQWLPPCTEA*CTQVAAGPLCHLQI
Trigger: TATTTGTAAATGACACAGAGGCCCTGCGGCGACCTGAGTGCACCAAGCTTCAGTACACGGTGGTAGCCACTGACCGGCAGACCCGCAGAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032201.8
ENSMUST00000088790.9
CDS-3UTR CAA 90 bp AAGCAGCAGTCTGGTGTCTGCCCAGGGCCCACATGGTTTTCCCGCTGCCCCACACCTGTCTTCAGAAGGTaGAAGAGTCGTTCAGGAGGA +
Preference number: 5 (lower is better)
Translates to: KQQSGVCPGPTWFSRCPTPVFRR*KSRSGG
Trigger: TCCTCCTGAACGACTCTTCAACCTTCTGAAGACAGG...TGTGGGGCAGCGGGAAAACCATGTGGGCCCTGGGCAGACACCAGACTGCTGCTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000088790.9
CDS GCA 90 bp AGGACAGAGTCACCGTCTCTTTGTTGGCACCAGGGCCTGCCACTATaGACAAAGCCTCCAGCACATACTTCTCCCGGAGCTCTCGATCCA +
Preference number: 5 (lower is better)
Translates to: RTESPSLCWHQGLPL*TKPPAHTSPGALDP
Trigger: TGGATCGAGAGCTCCGGGAGAAGTATGTGCTGGAGGCTTTGTGCATAGTGGCAGGCCCTGGTGCCAACAAAGAGACGGTGACTCTGTCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032201.8
ENSMUST00000088790.9
CDS GCA 90 bp ACCCAGGCCACCACATTCCTCACACTCGGGGCGCCTCTTGTTTACTaGACAGGACTTGGGGCAGCCTACTTCTTCAGTAATGGATGTCCC +
Preference number: 5 (lower is better)
Translates to: TQATTFLTLGAPLVY*TGLGAAYFFSNGCP
Trigger: GGGACATCCATTACTGAAGAAGTAGGCTGCCCCAAGTCCTGTGCAGTAAACAAGAGGCGCCCCGAGTGTGAGGAATGTGGTGGCCTGGGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032201.8
ENSMUST00000088790.9
CDS CCA 90 bp GTGTCGTTGATGAAGGAGAAGTACACACGGGTACAGCCTGGCCAATaGCATTCTCCCTCTCTCTGGGCTGTGGACCCCAGAAAGACCTGG +
Preference number: 5 (lower is better)
Translates to: VSLMKEKYTRVQPGQ*HSPSLWAVDPRKTW
Trigger: CCAGGTCTTTCTGGGGTCCACAGCCCAGAGAGAGGGAGAATGCCATTGGCCAGGCTGTACCCGTGTGTACTTCTCCTTCATCAACGACAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032201.8
ENSMUST00000088790.9
CDS CCA 90 bp GATCGTGCGGCACAGCGCATCACACAGTGGGCCCTGGCTGTCCTCTaGCTCGCAGAAGCATTTCTTCTCATCAGGGAAACAGTTGCAGAT +
Preference number: 5 (lower is better)
Translates to: DRAAQRITQWALAVL*LAEAFLLIRETVAD
Trigger: ATCTGCAACTGTTTCCCTGATGAGAAGAAATGCTTCTGCGAGCCAGAGGACAGCCAGGGCCCACTGTGTGATGCGCTGTGCCGCACGATC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032201.8
ENSMUST00000088790.9
CDS-3UTR CAA 90 bp TTTTGGCAAGAGCCGTATTTACTGTCCATTGCAAGGCCACAGCACCACAGACTATCCAGCGAGCTGGAGTaGCGGCTGCCTCCACCGCTC +
Preference number: 5 (lower is better)
Translates to: FWQEPYLLSIARPQHHRLSSELE*RLPPPL
Trigger: GAGCGGTGGAGGCAGCCGCAACTCCAGCTCGCTGGA...TAGTCTGTGGTGCTGTGGCCTTGCAATGGACAGTAAATACGGCTCTTGCCAAAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088790.9
CDS-3UTR CAA 90 bp GCAAGCCAGGGATTAAAACAAGACAGACCCACCTGTCCCCAAGCAGAGGGTGGGATTTCCTCGCTGCAGTaGTCTGGCCTCTCCATCCTG +
Preference number: 5 (lower is better)
Translates to: ASQGLKQDRPTCPQAEGGISSLQ*SGLSIL
Trigger: CAGGATGGAGAGGCCAGACAACTGCAGCGAGGAAAT...CCCACCCTCTGCTTGGGGACAGGTGGGTCTGTCTTGTTTTAATCCCTGGCTTGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000032201.8
CDS CCA 90 bp TGGGAAGGTGTCGTTGATGAAGGAGAAGTACACACGGGTACAGCCTaGCCAATGGCATTCTCCCTCTCTCTGGGCTGTGGACCCCAGAAA +
Preference number: 5 (lower is better)
Translates to: WEGVVDEGEVHTGTA*PMAFSLSLGCGPQK
Trigger: TTTCTGGGGTCCACAGCCCAGAGAGAGGGAGAATGCCATTGGCCAGGCTGTACCCGTGTGTACTTCTCCTTCATCAACGACACCTTCCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032201.8
ENSMUST00000088790.9
CDS TCA 90 bp GAATCAGCTTGTAATTGTGCATGGTTGCCCGAACGGAGTTGTTGTTaGCCTGGACCAAGGTCTCGATGGGCGAATGCTCCACCCGGAAGG +
Preference number: 5 (lower is better)
Translates to: ESACNCAWLPERSCC*PGPRSRWANAPPGR
Trigger: CCTTCCGGGTGGAGCATTCGCCCATCGAGACCTTGGTCCAGGTCAACAACAACTCCGTTCGGGCAACCATGCACAATTACAAGCTGATTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032201.8
ENSMUST00000088790.9
CDS GCA 90 bp CTGGCAGCTAAGTCCCGATGTACAAGCTTCATTTCTGCCAAGTACTaGATACCCCTCGAGATCTGCCAGGCGAAGGAGATGAGGTCACCC +
Preference number: 5 (lower is better)
Translates to: LAAKSRCTSFISAKY*IPLEICQAKEMRSP
Trigger: GGGTGACCTCATCTCCTTCGCCTGGCAGATCTCGAGGGGTATGCAGTACTTGGCAGAAATGAAGCTTGTACATCGGGACTTAGCTGCCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032201.8
ENSMUST00000088790.9
CDS GCA 90 bp AGATCCTTGCTGATGTCAGCAAACACTGGCCTCTTGTCTGGCTCCTaGTTCCAGCACTGCAGCATCAGACGGTACATTTCCTCGCTGCAG +
Preference number: 5 (lower is better)
Translates to: RSLLMSANTGLLSGS*FQHCSIRRYISSLQ
Trigger: CTGCAGCGAGGAAATGTACCGTCTGATGCTGCAGTGCTGGAAGCAGGAGCCAGACAAGAGGCCAGTGTTTGCTGACATCAGCAAGGATCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032201.8
ENSMUST00000088790.9
CDS-3UTR CAA 90 bp AAAGGGGCCGGTGGACTTGATGCTCTTGGCATGTTTCTTCCCCCTTGGGAGTCCCAGGCCCCATACAACTaGATGACATGTGGATGGTTG +
Preference number: 5 (lower is better)
Translates to: KGAGGLDALGMFLPPWESQAPYN*MTCGWL
Trigger: CAACCATCCACATGTCATCAAGTTGTATGGGGCCTG...GGACTCCCAAGGGGGAAGAAACATGCCAAGAGCATCAAGTCCACCGGCCCCTTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000032201.8
CDS TCA 90 bp CTGTGGTGTATCCTGCCCGGCCTTTCAGACGGAAGGCTGTGGCCTTaGCAACTTTTCCAAACTCGCCTTCTCCCAGAGTTTTCCCAAGAA +
Preference number: 5 (lower is better)
Translates to: LWCILPGLSDGRLWP*QLFQTRLLPEFSQE
Trigger: TTCTTGGGAAAACTCTGGGAGAAGGCGAGTTTGGAAAAGTTGTCAAGGCCACAGCCTTCCGTCTGAAAGGCCGGGCAGGATACACCACAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032201.8
ENSMUST00000088790.9
CDS CCA 90 bp TCCCTGACTCGGAAGGACACGGCTGTCTCTGGGATGCAGAGATCCTaGGCTTTGAAGGAGCTACAATTTGGGAAGGTGTCGTTGATGAAG +
Preference number: 5 (lower is better)
Translates to: SLTRKDTAVSGMQRS*ALKELQFGKVSLMK
Trigger: CTTCATCAACGACACCTTCCCAAATTGTAGCTCCTTCAAAGCCCAGGATCTCTGCATCCCAGAGACAGCCGTGTCCTTCCGAGTCAGGGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032201.8
ENSMUST00000088790.9
CDS-3UTR CAA 90 bp AACCTTGTTCTCTCACCTCAGTCAGTGTCAGGGAAACATCTAATGCAACTAGATTCCAGCGAGCTGGAGTaGCGGCTGCCTCCACCGCTC +
Preference number: 5 (lower is better)
Translates to: NLVLSPQSVSGKHLMQLDSSELE*RLPPPL
Trigger: GAGCGGTGGAGGCAGCCGCAACTCCAGCTCGCTGGA...ATCTAGTTGCATTAGATGTTTCCCTGACACTGACTGAGGTGAGAGAACAAGGTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032201.8
CDS CCA 90 bp AGACGGTACATTTCCTCGCTGCAGTTGTCTGGCCTCTCCATCCTGTaGCCTGTCTTCAGAAGGTTGAAGAGTCGTTCAGGAGGAATTCCA +
Preference number: 5 (lower is better)
Translates to: RRYISSLQLSGLSIL*PVFRRLKSRSGGIP
Trigger: TGGAATTCCTCCTGAACGACTCTTCAACCTTCTGAAGACAGGCCACAGGATGGAGAGGCCAGACAACTGCAGCGAGGAAATGTACCGTCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032201.8
ENSMUST00000088790.9
CDS-3UTR CAA 90 bp TGTGACCTTTTCATGGGAAGTGACAGTCCACAGACAGCCAAAGAAACTTCCAAGAGAGTCACCGTCTCTTaGTTGGCACCAGGGCCTGCC +
Preference number: 5 (lower is better)
Translates to: CDLFMGSDSPQTAKETSKRVTVS*LAPGPA
Trigger: GGCAGGCCCTGGTGCCAACAAAGAGACGGTGACTCT...CTTGGAAGTTTCTTTGGCTGTCTGTGGACTGTCACTTCCCATGAAAAGGTCACA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000032201.8
CDS-3UTR CAA 90 bp AGAGCTGACCCATGTGCCTTTCACACAAGCTCTATAAGAGCCAAAACCTTGTTCTGGAAGTCTGAGTCGTaGACCAGGACCGCGAGCTGC +
Preference number: 5 (lower is better)
Translates to: RADPCAFHTSSIRAKTLFWKSES*TRTASC
Trigger: GCAGCTCGCGGTCCTGGTCAACGACTCAGACTTCCA...GAACAAGGTTTTGGCTCTTATAGAGCTTGTGTGAAAGGCACATGGGTCAGCTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000032201.8
CDS-3UTR CAA 90 bp AAAGTCAGATATTTACAAAGAAAAGGGTTCGGAGGAGGCTTTGGTGTCGGTGGGTGGAAGTCTGAGTCGTaGACCAGGACCGCGAGCTGC +
Preference number: 5 (lower is better)
Translates to: KVRYLQRKGFGGGFGVGGWKSES*TRTASC
Trigger: GCAGCTCGCGGTCCTGGTCAACGACTCAGACTTCCA...CCCACCGACACCAAAGCCTCCTCCGAACCCTTTTCTTTGTAAATATCTGACTTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088790.9
CDS-3UTR CAA 90 bp TGTGACCTTTTCATGGGAAGTGACAGTCCACAGACAGCCAAAGAAACTTCCAAGTCCTGGGGGCAAATGTaGGCATCCCGGCTCTCCACA +
Preference number: 5 (lower is better)
Translates to: CDLFMGSDSPQTAKETSKSWGQM*ASRLST
Trigger: TGTGGAGAGCCGGGATGCCAACATTTGCCCCCAGGA...CTTGGAAGTTTCTTTGGCTGTCTGTGGACTGTCACTTCCCATGAAAAGGTCACA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000032201.8
CDS-3UTR CAA 90 bp ATGGGCCCTGAGAATTCTGCTCTAATCCGCTTCTCCTGTGTCATCGTAAGTTGCTCAATTGCCATCCACTaGACGGGAATCCGGCCCTTG +
Preference number: 5 (lower is better)
Translates to: MGPENSALIRFSCVIVSCSIAIH*TGIRPL
Trigger: CAAGGGCCGGATTCCCGTCAAGTGGATGGCAATTGA...GCAACTTACGATGACACAGGAGAAGCGGATTAGAGCAGAATTCTCAGGGCCCAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088790.9
CDS-3UTR CAA 90 bp AAAGGGGCCGGTGGACTTGATGCTCTTGGCATGTTTCTTCCCCCTTGGGAGTCCATCTTCTCCAGATCCTaGCTGATGTCAGCAAACACT +
Preference number: 5 (lower is better)
Translates to: KGAGGLDALGMFLPPWESIFSRS*LMSANT
Trigger: AGTGTTTGCTGACATCAGCAAGGATCTGGAGAAGAT...GGACTCCCAAGGGGGAAGAAACATGCCAAGAGCATCAAGTCCACCGGCCCCTTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000032201.8
CDS GCA 90 bp TGTACAAGCTTCATTTCTGCCAAGTACTGCATACCCCTCGAGATCTaGCAGGCGAAGGAGATGAGGTCACCCATGGTCAGTACCCTTTCA +
Preference number: 5 (lower is better)
Translates to: CTSFISAKYCIPLEI*QAKEMRSPMVSTLS
Trigger: TGAAAGGGTACTGACCATGGGTGACCTCATCTCCTTCGCCTGGCAGATCTCGAGGGGTATGCAGTACTTGGCAGAAATGAAGCTTGTACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032201.8
ENSMUST00000088790.9
CDS CCA 90 bp TGTCTCTGGGATGCAGAGATCCTGGGCTTTGAAGGAGCTACAATTTaGGAAGGTGTCGTTGATGAAGGAGAAGTACACACGGGTACAGCC +
Preference number: 5 (lower is better)
Translates to: CLWDAEILGFEGATI*EGVVDEGEVHTGTA
Trigger: GGCTGTACCCGTGTGTACTTCTCCTTCATCAACGACACCTTCCCAAATTGTAGCTCCTTCAAAGCCCAGGATCTCTGCATCCCAGAGACA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032201.8
ENSMUST00000088790.9
CDS CCA 90 bp GAGCCATACTTGGCATACTCCACAATGAGAAGAAGTGGCCCATCCTaGCTGCAGGCCCCATACAACTTGATGACATGTGGATGGTTGACT +
Preference number: 5 (lower is better)
Translates to: EPYLAYSTMRRSGPS*LQAPYNLMTCGWLT
Trigger: AGTCAACCATCCACATGTCATCAAGTTGTATGGGGCCTGCAGCCAGGATGGGCCACTTCTTCTCATTGTGGAGTATGCCAAGTATGGCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032201.8
ENSMUST00000088790.9
CDS-3UTR CAA 90 bp CTGTGTCATCGTAAGTTGCTGGGCTGTGTGGTAATGACACTTATTTTCACATCCTCCTGGGGGCAAATGTaGGCATCCCGGCTCTCCACA +
Preference number: 5 (lower is better)
Translates to: LCHRKLLGCVVMTLIFTSSWGQM*ASRLST
Trigger: TGTGGAGAGCCGGGATGCCAACATTTGCCCCCAGGA...GGATGTGAAAATAAGTGTCATTACCACACAGCCCAGCAACTTACGATGACACAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000088790.9
CDS-3UTR CAA 90 bp CATGTGGGGTCACTTCTTTCCAGTTGCCTTGTATATAGCAAAGGCAACACCAAAGGCTTGTGCCCATGCTaGTGGTGGTGGCAGACACAG +
Preference number: 5 (lower is better)
Translates to: HVGSLLSSCLVYSKGNTKGLCPC*WWWQTQ
Trigger: CTGTGTCTGCCACCACCACAAGCATGGGCACAAGCC...TTTGGTGTTGCCTTTGCTATATACAAGGCAACTGGAAAGAAGTGACCCCACATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000032201.8
CDS-3UTR CAA 90 bp CAGCCAGGAAAATCAGACAGTTCAGGTACAATTTCTCATCCAAGTCATGAATGGGTCACCGTCTCTTTGTaGGCACCAGGGCCTGCCACT +
Preference number: 5 (lower is better)
Translates to: QPGKSDSSGTISHPSHEWVTVSL*APGPAT
Trigger: AGTGGCAGGCCCTGGTGCCAACAAAGAGACGGTGAC...CCATTCATGACTTGGATGAGAAATTGTACCTGAACTGTCTGATTTTCCTGGCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000032201.8
CDS-3UTR CAA 90 bp CATGTGGGGTCACTTCTTTCCAGTTGCCTTGTATATAGCAAAGGCAACACCAAACTGGAAGGCTGCAGCTaGTACTGGATGGAGACACCG +
Preference number: 5 (lower is better)
Translates to: HVGSLLSSCLVYSKGNTKLEGCS*YWMETP
Trigger: CGGTGTCTCCATCCAGTACAAGCTGCAGCCTTCCAG...TTTGGTGTTGCCTTTGCTATATACAAGGCAACTGGAAAGAAGTGACCCCACATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000032201.8
CDS-3UTR CAA 90 bp AAAGTCAGATATTTACAAAGAAAAGGGTTCGGAGGAGGCTTTGGTGTCGGTGGGATTTCCTCGCTGCAGTaGTCTGGCCTCTCCATCCTG +
Preference number: 5 (lower is better)
Translates to: KVRYLQRKGFGGGFGVGGISSLQ*SGLSIL
Trigger: CAGGATGGAGAGGCCAGACAACTGCAGCGAGGAAAT...CCCACCGACACCAAAGCCTCCTCCGAACCCTTTTCTTTGTAAATATCTGACTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088790.9
CDS-3UTR CAA 90 bp TGTGACCTTTTCATGGGAAGTGACAGTCCACAGACAGCCAAAGAAACTTCCAAGCCCAGTAAGCATCCCTaGAGAAATAGAGGCCCAGTG +
Preference number: 5 (lower is better)
Translates to: CDLFMGSDSPQTAKETSKPSKHP*RNRGPV
Trigger: CACTGGGCCTCTATTTCTCAAGGGATGCTTACTGGG...CTTGGAAGTTTCTTTGGCTGTCTGTGGACTGTCACTTCCCATGAAAAGGTCACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000032201.8
CDS-3UTR CAA 90 bp AGGGAGGACCACCAGCTATTTGAAGTAAAACCATTTGGAAACCAGCTAAAACAACCTAGGGCAGTGCAGTaGATGCTGGAAGGCTGCAGC +
Preference number: 5 (lower is better)
Translates to: REDHQLFEVKPFGNQLKQPRAVQ*MLEGCS
Trigger: GCTGCAGCCTTCCAGCATCAACTGCACTGCCCTAGG...TTGTTTTAGCTGGTTTCCAAATGGTTTTACTTCAAATAGCTGGTGGTCCTCCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000032201.8
CDS-3UTR CAA 90 bp AGAGCTGACCCATGTGCCTTTCACACAAGCTCTATAAGAGCCAAAACCTTGTTCCGGAAGGCTGTGGCCTaGACAACTTTTCCAAACTCG +
Preference number: 5 (lower is better)
Translates to: RADPCAFHTSSIRAKTLFRKAVA*TTFPNS
Trigger: CGAGTTTGGAAAAGTTGTCAAGGCCACAGCCTTCCG...GAACAAGGTTTTGGCTCTTATAGAGCTTGTGTGAAAGGCACATGGGTCAGCTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000032201.8
CDS-3UTR CAA 90 bp TGTGACCTTTTCATGGGAAGTGACAGTCCACAGACAGCCAAAGAAACTTCCAAGCGCAGGGAGCCATACTaGGCATACTCCACAATGAGA +
Preference number: 5 (lower is better)
Translates to: CDLFMGSDSPQTAKETSKRREPY*AYSTMR
Trigger: TCTCATTGTGGAGTATGCCAAGTATGGCTCCCTGCG...CTTGGAAGTTTCTTTGGCTGTCTGTGGACTGTCACTTCCCATGAAAAGGTCACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000032201.8
CDS-3UTR CAA 90 bp AACCTTGTTCTCTCACCTCAGTCAGTGTCAGGGAAACATCTAATGCAACTAGATGCAAACACTGGCCTCTaGTCTGGCTCCTGCTTCCAG +
Preference number: 5 (lower is better)
Translates to: NLVLSPQSVSGKHLMQLDANTGL*SGSCFQ
Trigger: CTGGAAGCAGGAGCCAGACAAGAGGCCAGTGTTTGC...ATCTAGTTGCATTAGATGTTTCCCTGACACTGACTGAGGTGAGAGAACAAGGTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032201.8
CDS-3UTR CAA 90 bp AGAGCCGTATTTACTGTCCATTGCAAGGCCACAGCACCACAGACTATGTTCTTTCAGAGATCCTGGGCTTaGAAGGAGCTACAATTTGGG +
Preference number: 5 (lower is better)
Translates to: RAVFTVHCKATAPQTMFFQRSWA*KELQFG
Trigger: CCCAAATTGTAGCTCCTTCAAAGCCCAGGATCTCTG...AAAGAACATAGTCTGTGGTGCTGTGGCCTTGCAATGGACAGTAAATACGGCTCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088790.9
CDS-3UTR CAA 90 bp AGAGCCGTATTTACTGTCCATTGCAAGGCCACAGCACCACAGACTATGTTCTTTCAGGCCCCATACAACTaGATGACATGTGGATGGTTG +
Preference number: 5 (lower is better)
Translates to: RAVFTVHCKATAPQTMFFQAPYN*MTCGWL
Trigger: CAACCATCCACATGTCATCAAGTTGTATGGGGCCTG...AAAGAACATAGTCTGTGGTGCTGTGGCCTTGCAATGGACAGTAAATACGGCTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088790.9
CDS-3UTR CAA 90 bp CATGTGGGGTCACTTCTTTCCAGTTGCCTTGTATATAGCAAAGGCAACACCAAACAGAGATCCTGGGCTTaGAAGGAGCTACAATTTGGG +
Preference number: 5 (lower is better)
Translates to: HVGSLLSSCLVYSKGNTKQRSWA*KELQFG
Trigger: CCCAAATTGTAGCTCCTTCAAAGCCCAGGATCTCTG...TTTGGTGTTGCCTTTGCTATATACAAGGCAACTGGAAAGAAGTGACCCCACATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000032201.8
CDS-3UTR CAA 90 bp GCAAAACTGACTCCCTCCCCAGATCAGGTAAATTTAAATATCGAAGTCACCAGTCGGAAGGCTGTGGCCTaGACAACTTTTCCAAACTCG +
Preference number: 5 (lower is better)
Translates to: AKLTPSPDQVNLNIEVTSRKAVA*TTFPNS
Trigger: CGAGTTTGGAAAAGTTGTCAAGGCCACAGCCTTCCG...ACTGGTGACTTCGATATTTAAATTTACCTGATCTGGGGAGGGAGTCAGTTTTGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000088790.9
CDS-3UTR CAA 90 bp ATGGGCCCTGAGAATTCTGCTCTAATCCGCTTCTCCTGTGTCATCGTAAGTTGCATGACATGTGGATGGTaGACTTGTTTCAGAAGGTTG +
Preference number: 5 (lower is better)
Translates to: MGPENSALIRFSCVIVSCMTCGW*TCFRRL
Trigger: CAACCTTCTGAAACAAGTCAACCATCCACATGTCAT...GCAACTTACGATGACACAGGAGAAGCGGATTAGAGCAGAATTCTCAGGGCCCAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088790.9
CDS-3UTR CAA 90 bp GCAAAACTGACTCCCTCCCCAGATCAGGTAAATTTAAATATCGAAGTCACCAGTCGCAGGGAGCCATACTaGGCATACTCCACAATGAGA +
Preference number: 5 (lower is better)
Translates to: AKLTPSPDQVNLNIEVTSRREPY*AYSTMR
Trigger: TCTCATTGTGGAGTATGCCAAGTATGGCTCCCTGCG...ACTGGTGACTTCGATATTTAAATTTACCTGATCTGGGGAGGGAGTCAGTTTTGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000088790.9
CDS-3UTR CAA 90 bp AGGGAGGACCACCAGCTATTTGAAGTAAAACCATTTGGAAACCAGCTAAAACAATCAATTGCCATCCACTaGACGGGAATCCGGCCCTTG +
Preference number: 5 (lower is better)
Translates to: REDHQLFEVKPFGNQLKQSIAIH*TGIRPL
Trigger: CAAGGGCCGGATTCCCGTCAAGTGGATGGCAATTGA...TTGTTTTAGCTGGTTTCCAAATGGTTTTACTTCAAATAGCTGGTGGTCCTCCCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000032201.8
CDS-3UTR CAA 90 bp AAAGACATAGCTGCAAAATGCCTGAATGTATGTAAACTAGATGCAAAGTCAGATCCTAGGGCAGTGCAGTaGATGCTGGAAGGCTGCAGC +
Preference number: 5 (lower is better)
Translates to: KDIAAKCLNVCKLDAKSDPRAVQ*MLEGCS
Trigger: GCTGCAGCCTTCCAGCATCAACTGCACTGCCCTAGG...ATCTGACTTTGCATCTAGTTTACATACATTCAGGCATTTTGCAGCTATGTCTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088790.9
CDS-3UTR CAA 90 bp AACCTTGTTCTCTCACCTCAGTCAGTGTCAGGGAAACATCTAATGCAACTAGATCCTGTCTTCAGAAGGTaGAAGAGTCGTTCAGGAGGA +
Preference number: 5 (lower is better)
Translates to: NLVLSPQSVSGKHLMQLDPVFRR*KSRSGG
Trigger: TCCTCCTGAACGACTCTTCAACCTTCTGAAGACAGG...ATCTAGTTGCATTAGATGTTTCCCTGACACTGACTGAGGTGAGAGAACAAGGTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032201.8
CDS GCA 90 bp CACATCACTTTGAGTAGTATAGATGTGATCGAAAAGGGACTCAATTaGCATCCACTTGACGGGAATCCGGCCCTTGCTTTTCTTCACATA +
Preference number: 5 (lower is better)
Translates to: HITLSSIDVIEKGLN*HPLDGNPALAFLHI
Trigger: TATGTGAAGAAAAGCAAGGGCCGGATTCCCGTCAAGTGGATGGCAATTGAGTCCCTTTTCGATCACATCTATACTACTCAAAGTGATGTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032201.8
ENSMUST00000088790.9
CDS-3UTR CAA 90 bp TGTGACCTTTTCATGGGAAGTGACAGTCCACAGACAGCCAAAGAAACTTCCAAGATGTGGATGGTTGACTaGTTTCAGAAGGTTGAACTC +
Preference number: 5 (lower is better)
Translates to: CDLFMGSDSPQTAKETSKMWMVD*FQKVEL
Trigger: GAGTTCAACCTTCTGAAACAAGTCAACCATCCACAT...CTTGGAAGTTTCTTTGGCTGTCTGTGGACTGTCACTTCCCATGAAAAGGTCACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000032201.8
CDS-3UTR CAA 90 bp ACACTCTTTAAAAAGCGTTACAGAGAGTTGGGATGGTGCAGAGAGGACAGCGTTATGTGGATGGTTGACTaGTTTCAGAAGGTTGAACTC +
Preference number: 5 (lower is better)
Translates to: TLFKKRYRELGWCREDSVMWMVD*FQKVEL
Trigger: GAGTTCAACCTTCTGAAACAAGTCAACCATCCACAT...AACGCTGTCCTCTCTGCACCATCCCAACTCTCTGTAACGCTTTTTAAAGAGTGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000088790.9
CDS-3UTR CAA 90 bp CTGTGTCATCGTAAGTTGCTGGGCTGTGTGGTAATGACACTTATTTTCACATCCATCTTCTCCAGATCCTaGCTGATGTCAGCAAACACT +
Preference number: 5 (lower is better)
Translates to: LCHRKLLGCVVMTLIFTSIFSRS*LMSANT
Trigger: AGTGTTTGCTGACATCAGCAAGGATCTGGAGAAGAT...GGATGTGAAAATAAGTGTCATTACCACACAGCCCAGCAACTTACGATGACACAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088790.9
CDS-3UTR CAA 90 bp ATGCTAGGCTTTCATTCTAGACAAGGACAGGTCGTTCTGGCCAGGTTTTTCAATATGTGTCCATTAATTTaGCCGCTGAGGGTGAAACCA +
Preference number: 5 (lower is better)
Translates to: MLGFHSRQGQVVLARFFNMCPLI*PLRVKP
Trigger: TGGTTTCACCCTCAGCGGCAAAATTAATGGACACAT...ATTGAAAAACCTGGCCAGAACGACCTGTCCTTGTCTAGAATGAAAGCCTAGCAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000032201.8
CDS-3UTR CAA 90 bp AAAGACATAGCTGCAAAATGCCTGAATGTATGTAAACTAGATGCAAAGTCAGATCCCAGTAAGCATCCCTaGAGAAATAGAGGCCCAGTG +
Preference number: 5 (lower is better)
Translates to: KDIAAKCLNVCKLDAKSDPSKHP*RNRGPV
Trigger: CACTGGGCCTCTATTTCTCAAGGGATGCTTACTGGG...ATCTGACTTTGCATCTAGTTTACATACATTCAGGCATTTTGCAGCTATGTCTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088790.9
CDS-3UTR CAA 90 bp CAGCCAGGAAAATCAGACAGTTCAGGTACAATTTCTCATCCAAGTCATGAATGGATGACATGTGGATGGTaGACTTGTTTCAGAAGGTTG +
Preference number: 5 (lower is better)
Translates to: QPGKSDSSGTISHPSHEWMTCGW*TCFRRL
Trigger: CAACCTTCTGAAACAAGTCAACCATCCACATGTCAT...CCATTCATGACTTGGATGAGAAATTGTACCTGAACTGTCTGATTTTCCTGGCTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000032201.8
CDS-3UTR CAA 90 bp CAGTCAGTGTCAGGGAAACATCTAATGCAACTAGATGAACTGTCCTTCCCTTTGCATATACACTATCATTaGCATATCTTGGGAACCCAG +
Preference number: 5 (lower is better)
Translates to: QSVSGKHLMQLDELSFPLHIHYH*HILGTQ
Trigger: CTGGGTTCCCAAGATATGCAAATGATAGTGTATATG...CAAAGGGAAGGACAGTTCATCTAGTTGCATTAGATGTTTCCCTGACACTGACTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032201.8
CDS TCA 72 bp CCAGTGAGGGCCGGCGGGTGCCTGAGGAGGAATAACTaGTTGGGAAGCCCTGGGCCGGCCGGCAGAAGGTCA +
Preference number: 6 (lower is better)
Translates to: PVRAGGCLRRNN*LGSPGPAGRRS
Trigger: TGACCTTCTGCCGGCCGGCCCAGGGCTTCCCAATCAGTTATTCCTCCTCAGGCACCCGCCGGCCCTCACTGG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032201.8
ENSMUST00000088790.9
CDS TCA 72 bp CTGCGGGTCTGCCGGTCAGTGGCTACCACCGTGTACTaGAGCTTGGTGCACTCAGGTCGCCGCAGGGCCTCT +
Preference number: 6 (lower is better)
Translates to: LRVCRSVATTVY*SLVHSGRRRAS
Trigger: AGAGGCCCTGCGGCGACCTGAGTGCACCAAGCTTCAGTACACGGTGGTAGCCACTGACCGGCAGACCCGCAG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032201.8
ENSMUST00000088790.9
CDS GCA 72 bp CCGTCTCACCAGCTCCCCAGACGCTGGCACCACATCTaGATCGAACACCTGCAGGGTGGCCACCACAGTGCC +
Preference number: 6 (lower is better)
Translates to: PSHQLPRRWHHI*IEHLQGGHHSA
Trigger: GGCACTGTGGTGGCCACCCTGCAGGTGTTCGATGCAGATGTGGTGCCAGCGTCTGGGGAGCTGGTGAGACGG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032201.8
ENSMUST00000088790.9
CDS GCA 72 bp GGCTGCCTCCACCGCTCACATAGGCAGGCCCAATCTTaGGGCTGTCACGGAGGAATCCCCGCAGGGAGCCAT +
Preference number: 6 (lower is better)
Translates to: GCLHRSHRQAQS*GCHGGIPAGSH
Trigger: ATGGCTCCCTGCGGGGATTCCTCCGTGACAGCCGCAAGATTGGGCCTGCCTATGTGAGCGGTGGAGGCAGCC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032201.8
ENSMUST00000088790.9
CDS TCA 72 bp GAAGCCCTGGGCCGGCCGGCAGAAGGTCATTTCCGCTaGTGCAATGGGCGGCTTGTGCCCATGCTTGTGGTG +
Preference number: 6 (lower is better)
Translates to: EALGRPAEGHFR*CNGRLVPMLVV
Trigger: CACCACAAGCATGGGCACAAGCCGCCCATTGCATCAGCGGAAATGACCTTCTGCCGGCCGGCCCAGGGCTTC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032201.8
ENSMUST00000088790.9
CDS GCA 72 bp ACTTCTCCCGGAGCTCTCGATCCAGGGCCCAGCGAGTaGTCACCTCCAGGCAGTCTGGGTCACAACGGAAGG +
Preference number: 6 (lower is better)
Translates to: TSPGALDPGPSE*SPPGSLGHNGR
Trigger: CCTTCCGTTGTGACCCAGACTGCCTGGAGGTGAGCACTCGCTGGGCCCTGGATCGAGAGCTCCGGGAGAAGT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032201.8
ENSMUST00000088790.9
CDS CCA 72 bp CAAATGTTGGCATCCCGGCTCTCCACAGCATCACAGTaGCCGTCGGGGCAGGTCCTGGTACTGGGGGAGCAG +
Preference number: 6 (lower is better)
Translates to: QMLASRLSTASQ*PSGQVLVLGEQ
Trigger: CTGCTCCCCCAGTACCAGGACCTGCCCCGACGGCCACTGTGATGCTGTGGAGAGCCGGGATGCCAACATTTG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000032201.8
ENSMUST00000088790.9
CDS CAA 90 bp CCCGGAAGGTCTGCTGGGCCCAGGAGTCCCCTGAGAGGAGTGTGTTaGTGTACCGTCTCACCAGCTCCCCAGACGCTGGCACCACATCTG +
Preference number: 6 (lower is better)
Translates to: PGRSAGPRSPLRGVC*CTVSPAPQTLAPHL
Trigger: CAGATGTGGTGCCAGCGTCTGGGGAGCTGGTGAGACGGTACACAAACACACTCCTCTCAGGGGACTCCTGGGCCCAGCAGACCTTCCGGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032201.8
ENSMUST00000088790.9
CDS CAA 90 bp TGTCCTCCAACAATGTCGGCACGGAGACAGTCCTGGGGGCAAATGTaGGCATCCCGGCTCTCCACAGCATCACAGTGGCCGTCGGGGCAG +
Preference number: 6 (lower is better)
Translates to: CPPTMSARRQSWGQM*ASRLSTASQWPSGQ
Trigger: CTGCCCCGACGGCCACTGTGATGCTGTGGAGAGCCGGGATGCCAACATTTGCCCCCAGGACTGTCTCCGTGCCGACATTGTTGGAGGACA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000032201.8
ENSMUST00000088790.9
CDS TCA 72 bp CTCCACCCGGAAGGTCTGCTGGGCCCAGGAGTCCCCTaGGAGGAGTGTGTTTGTGTACCGTCTCACCAGCTC +
Preference number: 6 (lower is better)
Translates to: LHPEGLLGPGVP*EECVCVPSHQL
Trigger: GAGCTGGTGAGACGGTACACAAACACACTCCTCTCAGGGGACTCCTGGGCCCAGCAGACCTTCCGGGTGGAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032201.8
ENSMUST00000088790.9
CDS GCA 72 bp GTACCCTTTCATCTGGGTGGTCCAGCGAGCTGGAGTTaGGGCTGCCTCCACCGCTCACATAGGCAGGCCCAA +
Preference number: 6 (lower is better)
Translates to: VPFHLGGPASWS*GCLHRSHRQAQ
Trigger: TTGGGCCTGCCTATGTGAGCGGTGGAGGCAGCCGCAACTCCAGCTCGCTGGACCACCCAGATGAAAGGGTAC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032201.8
ENSMUST00000088790.9
CDS CCA 72 bp GTCTCGATGGGCGAATGCTCCACCCGGAAGGTCTGCTaGGCCCAGGAGTCCCCTGAGAGGAGTGTGTTTGTG +
Preference number: 6 (lower is better)
Translates to: VSMGECSTRKVC*AQESPERSVFV
Trigger: CACAAACACACTCCTCTCAGGGGACTCCTGGGCCCAGCAGACCTTCCGGGTGGAGCATTCGCCCATCGAGAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032201.8
ENSMUST00000088790.9
CDS CAA 90 bp CCCGAGGTGTCCTCGGGTGAGGTGACCACACCTAGGGCAGTGCAGTaGATGCTGGAAGGCTGCAGCTTGTACTGGATGGAGACACCGCTG +
Preference number: 6 (lower is better)
Translates to: PEVSSGEVTTPRAVQ*MLEGCSLYWMETPL
Trigger: CAGCGGTGTCTCCATCCAGTACAAGCTGCAGCCTTCCAGCATCAACTGCACTGCCCTAGGTGTGGTCACCTCACCCGAGGACACCTCGGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032201.8
ENSMUST00000088790.9
CDS GCA 72 bp AAGGTCTCGATGGGCGAATGCTCCACCCGGAAGGTCTaGTGGGCCCAGGAGTCCCCTGAGAGGAGTGTGTTT +
Preference number: 6 (lower is better)
Translates to: KVSMGECSTRKV*WAQESPERSVF
Trigger: AAACACACTCCTCTCAGGGGACTCCTGGGCCCAGCAGACCTTCCGGGTGGAGCATTCGCCCATCGAGACCTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032201.8
ENSMUST00000088790.9
CDS GCA 72 bp TTGTTGTTGACCTGGACCAAGGTCTCGATGGGCGAATaGTCCACCCGGAAGGTCTGCTGGGCCCAGGAGTCC +
Preference number: 6 (lower is better)
Translates to: LLLTWTKVSMGE*STRKVCWAQES
Trigger: GGACTCCTGGGCCCAGCAGACCTTCCGGGTGGAGCATTCGCCCATCGAGACCTTGGTCCAGGTCAACAACAA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032201.8
ENSMUST00000088790.9
CDS GCA 72 bp CCCTGGAAGTCTGAGTCGTTGACCAGGACCGCGAGCTaGAGGACTCGGCTCTCTGAGATAGACAGGCTCCTG +
Preference number: 6 (lower is better)
Translates to: PWKSESLTRTAS*RTRLSEIDRLL
Trigger: CAGGAGCCTGTCTATCTCAGAGAGCCGAGTCCTGCAGCTCGCGGTCCTGGTCAACGACTCAGACTTCCAGGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032201.8
ENSMUST00000088790.9
CDS GCA 72 bp TTTCATCTGGGTGGTCCAGCGAGCTGGAGTTGCGGCTaGCTCCACCGCTCACATAGGCAGGCCCAATCTTGC +
Preference number: 6 (lower is better)
Translates to: FHLGGPASWSCG*LHRSHRQAQSC
Trigger: GCAAGATTGGGCCTGCCTATGTGAGCGGTGGAGGCAGCCGCAACTCCAGCTCGCTGGACCACCCAGATGAAA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032201.8
ENSMUST00000088790.9
CDS CCA 72 bp AGGTTCAGGGTGACGGGCAGTACAGACACGTTGAAATaGAGGACGAGGATACCACCTGCCCCAGGCCCCTGG +
Preference number: 6 (lower is better)
Translates to: RFRVTGSTDTLK*RTRIPPAPGPW
Trigger: CCAGGGGCCTGGGGCAGGTGGTATCCTCGTCCTCCATTTCAACGTGTCTGTACTGCCCGTCACCCTGAACCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032201.8
ENSMUST00000088790.9
CDS CCA 72 bp TGGTCAGTACCCTTTCATCTGGGTGGTCCAGCGAGCTaGAGTTGCGGCTGCCTCCACCGCTCACATAGGCAG +
Preference number: 6 (lower is better)
Translates to: WSVPFHLGGPAS*SCGCLHRSHRQ
Trigger: CTGCCTATGTGAGCGGTGGAGGCAGCCGCAACTCCAGCTCGCTGGACCACCCAGATGAAAGGGTACTGACCA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032201.8
ENSMUST00000088790.9
CDS CAA 72 bp ACAATGTCGGCACGGAGACAGTCCTGGGGGCAAATGTaGGCATCCCGGCTCTCCACAGCATCACAGTGGCCG +
Preference number: 6 (lower is better)
Translates to: TMSARRQSWGQM*ASRLSTASQWP
Trigger: CGGCCACTGTGATGCTGTGGAGAGCCGGGATGCCAACATTTGCCCCCAGGACTGTCTCCGTGCCGACATTGT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000032201.8
ENSMUST00000088790.9
CDS TCA 72 bp GGAAGTGGTAGAAGGTGCCAGGAGGCCTGTTCTCCCTaGCTCGGAAGGACACGGCTGTCTCTGGGATGCAGA +
Preference number: 6 (lower is better)
Translates to: GSGRRCQEACSP*LGRTRLSLGCR
Trigger: TCTGCATCCCAGAGACAGCCGTGTCCTTCCGAGTCAGGGAGAACAGGCCTCCTGGCACCTTCTACCACTTCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032201.8
ENSMUST00000088790.9
CDS GCA 72 bp GGGCATCCCGTAGGGCATGGACATAGAGCAGAGGTGTaGCAGCTGGCTGGTCTACATACAGCCTCTCCCAGT +
Preference number: 6 (lower is better)
Translates to: GHPVGHGHRAEV*QLAGLHTASPS
Trigger: ACTGGGAGAGGCTGTATGTAGACCAGCCAGCTGGCACACCTCTGCTCTATGTCCATGCCCTACGGGATGCCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032201.8
ENSMUST00000088790.9
CDS GCA 72 bp GCCGGTCAGTGGCTACCACCGTGTACTGAAGCTTGGTaGACTCAGGTCGCCGCAGGGCCTCTGTGTCATTTA +
Preference number: 6 (lower is better)
Translates to: AGQWLPPCTEAW*TQVAAGPLCHL
Trigger: TAAATGACACAGAGGCCCTGCGGCGACCTGAGTGCACCAAGCTTCAGTACACGGTGGTAGCCACTGACCGGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032201.8
ENSMUST00000088790.9
CDS CCA 72 bp TGTGTTTGTGTACCGTCTCACCAGCTCCCCAGACGCTaGCACCACATCTGCATCGAACACCTGCAGGGTGGC +
Preference number: 6 (lower is better)
Translates to: CVCVPSHQLPRR*HHICIEHLQGG
Trigger: GCCACCCTGCAGGTGTTCGATGCAGATGTGGTGCCAGCGTCTGGGGAGCTGGTGAGACGGTACACAAACACA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032201.8
ENSMUST00000088790.9
CDS CCA 72 bp GTGGAGAAGTTCCTGGTGATCCCTTTACCATCTCCCTaGCGCCACTCGCACCTGCCAGTTGGAGAACCCAGG +
Preference number: 6 (lower is better)
Translates to: VEKFLVIPLPSP*RHSHLPVGEPR
Trigger: CCTGGGTTCTCCAACTGGCAGGTGCGAGTGGCGCCAGGGAGATGGTAAAGGGATCACCAGGAACTTCTCCAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032201.8
ENSMUST00000088790.9
CDS CCA 72 bp TCGTGTCCTCCAACAATGTCGGCACGGAGACAGTCCTaGGGGCAAATGTTGGCATCCCGGCTCTCCACAGCA +
Preference number: 6 (lower is better)
Translates to: SCPPTMSARRQS*GQMLASRLSTA
Trigger: TGCTGTGGAGAGCCGGGATGCCAACATTTGCCCCCAGGACTGTCTCCGTGCCGACATTGTTGGAGGACACGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032201.8
ENSMUST00000088790.9
CDS CAA 72 bp CCCAGGCCACCACATTCCTCACACTCGGGGCGCCTCTaGTTTACTGCACAGGACTTGGGGCAGCCTACTTCT +
Preference number: 6 (lower is better)
Translates to: PRPPHSSHSGRL*FTAQDLGQPTS
Trigger: AGAAGTAGGCTGCCCCAAGTCCTGTGCAGTAAACAAGAGGCGCCCCGAGTGTGAGGAATGTGGTGGCCTGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032201.8
ENSMUST00000088790.9
CDS CAA 90 bp TGCCAGCTGGCTGGTCTACATACAGCCTCTCCCAGTAAGCATCCCTaGAGAAATAGAGGCCCAGTGGGGCTTCTCCTAGCAGCGGCAGGA +
Preference number: 6 (lower is better)
Translates to: CQLAGLHTASPSKHP*RNRGPVGLLLAAAG
Trigger: TCCTGCCGCTGCTAGGAGAAGCCCCACTGGGCCTCTATTTCTCAAGGGATGCTTACTGGGAGAGGCTGTATGTAGACCAGCCAGCTGGCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032201.8
ENSMUST00000088790.9
CDS CAA 90 bp CCAATCTTGCGGCTGTCACGGAGGAATCCCCGCAGGGAGCCATACTaGGCATACTCCACAATGAGAAGAAGTGGCCCATCCTGGCTGCAG +
Preference number: 6 (lower is better)
Translates to: PILRLSRRNPRREPY*AYSTMRRSGPSWLQ
Trigger: CTGCAGCCAGGATGGGCCACTTCTTCTCATTGTGGAGTATGCCAAGTATGGCTCCCTGCGGGGATTCCTCCGTGACAGCCGCAAGATTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032201.8
ENSMUST00000088790.9
CDS TCA 72 bp ATCCCCGCAGGGAGCCATACTTGGCATACTCCACAATaGGAAGAAGTGGCCCATCCTGGCTGCAGGCCCCAT +
Preference number: 6 (lower is better)
Translates to: IPAGSHTWHTPQ*EEVAHPGCRPH
Trigger: ATGGGGCCTGCAGCCAGGATGGGCCACTTCTTCTCATTGTGGAGTATGCCAAGTATGGCTCCCTGCGGGGAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032201.8
ENSMUST00000088790.9
CDS GCA 72 bp CTTCTCATCAGGGAAACAGTTGCAGATGCCGTAGCCTaGTTTAATGCCCTGGCGCTCCCCTCGCTCGTGTCC +
Preference number: 6 (lower is better)
Translates to: LLIRETVADAVA*FNALALPSLVS
Trigger: GGACACGAGCGAGGGGAGCGCCAGGGCATTAAAGCAGGCTACGGCATCTGCAACTGTTTCCCTGATGAGAAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032201.8
ENSMUST00000088790.9
CDS CCA 72 bp GGTGGGCGCCGAGTCGTCCTCATCATACACTGTCACTaGGAAGGACAGAGTCACCGTCTCTTTGTTGGCACC +
Preference number: 6 (lower is better)
Translates to: GGRRVVLIIHCH*EGQSHRLFVGT
Trigger: GGTGCCAACAAAGAGACGGTGACTCTGTCCTTCCCAGTGACAGTGTATGATGAGGACGACTCGGCGCCCACC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032201.8
ENSMUST00000088790.9
CDS CCA 72 bp ATGATCGTGCGGCACAGCGCATCACACAGTGGGCCCTaGCTGTCCTCTGGCTCGCAGAAGCATTTCTTCTCA +
Preference number: 6 (lower is better)
Translates to: MIVRHSASHSGP*LSSGSQKHFFS
Trigger: TGAGAAGAAATGCTTCTGCGAGCCAGAGGACAGCCAGGGCCCACTGTGTGATGCGCTGTGCCGCACGATCAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032201.8
ENSMUST00000088790.9
CDS CCA 72 bp GCTGATGCAATGGGCGGCTTGTGCCCATGCTTGTGGTaGTGGCAGACACAGAAGATGGACAGCAGGATGGAG +
Preference number: 6 (lower is better)
Translates to: ADAMGGLCPCLW*WQTQKMDSRME
Trigger: CTCCATCCTGCTGTCCATCTTCTGTGTCTGCCACCACCACAAGCATGGGCACAAGCCGCCCATTGCATCAGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032201.8
ENSMUST00000088790.9
CDS CAA 72 bp CCTAGGGCAGTGCAGTTGATGCTGGAAGGCTGCAGCTaGTACTGGATGGAGACACCGCTGAACTCCTGGCAG +
Preference number: 6 (lower is better)
Translates to: PRAVQLMLEGCS*YWMETPLNSWQ
Trigger: CTGCCAGGAGTTCAGCGGTGTCTCCATCCAGTACAAGCTGCAGCCTTCCAGCATCAACTGCACTGCCCTAGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032201.8
ENSMUST00000088790.9
CDS CAA 72 bp CGGCAGAAGGTCATTTCCGCTGATGCAATGGGCGGCTaGTGCCCATGCTTGTGGTGGTGGCAGACACAGAAG +
Preference number: 6 (lower is better)
Translates to: RQKVISADAMGG*CPCLWWWQTQK
Trigger: CTTCTGTGTCTGCCACCACCACAAGCATGGGCACAAGCCGCCCATTGCATCAGCGGAAATGACCTTCTGCCG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032201.8
ENSMUST00000088790.9
CDS CAA 72 bp CGGCTGTCACGGAGGAATCCCCGCAGGGAGCCATACTaGGCATACTCCACAATGAGAAGAAGTGGCCCATCC +
Preference number: 6 (lower is better)
Translates to: RLSRRNPRREPY*AYSTMRRSGPS
Trigger: GGATGGGCCACTTCTTCTCATTGTGGAGTATGCCAAGTATGGCTCCCTGCGGGGATTCCTCCGTGACAGCCG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032201.8
ENSMUST00000088790.9
CDS GCA 72 bp TCACCGTCTCTTTGTTGGCACCAGGGCCTGCCACTATaGACAAAGCCTCCAGCACATACTTCTCCCGGAGCT +
Preference number: 6 (lower is better)
Translates to: SPSLCWHQGLPL*TKPPAHTSPGA
Trigger: AGCTCCGGGAGAAGTATGTGCTGGAGGCTTTGTGCATAGTGGCAGGCCCTGGTGCCAACAAAGAGACGGTGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032201.8
ENSMUST00000088790.9
CDS GCA 72 bp ACCACACCTAGGGCAGTGCAGTTGATGCTGGAAGGCTaGAGCTTGTACTGGATGGAGACACCGCTGAACTCC +
Preference number: 6 (lower is better)
Translates to: TTPRAVQLMLEG*SLYWMETPLNS
Trigger: GGAGTTCAGCGGTGTCTCCATCCAGTACAAGCTGCAGCCTTCCAGCATCAACTGCACTGCCCTAGGTGTGGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032201.8
ENSMUST00000088790.9
CDS GCA 72 bp TCCAGCACTGCAGCATCAGACGGTACATTTCCTCGCTaGAGTTGTCTGGCCTCTCCATCCTGTGGCCTGTCT +
Preference number: 6 (lower is better)
Translates to: SSTAASDGTFPR*SCLASPSCGLS
Trigger: AGACAGGCCACAGGATGGAGAGGCCAGACAACTGCAGCGAGGAAATGTACCGTCTGATGCTGCAGTGCTGGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032201.8
ENSMUST00000088790.9
CDS CCA 72 bp ATGAAGGAGAAGTACACACGGGTACAGCCTGGCCAATaGCATTCTCCCTCTCTCTGGGCTGTGGACCCCAGA +
Preference number: 6 (lower is better)
Translates to: MKEKYTRVQPGQ*HSPSLWAVDPR
Trigger: TCTGGGGTCCACAGCCCAGAGAGAGGGAGAATGCCATTGGCCAGGCTGTACCCGTGTGTACTTCTCCTTCAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032201.8
ENSMUST00000088790.9
CDS CCA 72 bp CCTGTTCTCCCTGACTCGGAAGGACACGGCTGTCTCTaGGATGCAGAGATCCTGGGCTTTGAAGGAGCTACA +
Preference number: 6 (lower is better)
Translates to: PVLPDSEGHGCL*DAEILGFEGAT
Trigger: TGTAGCTCCTTCAAAGCCCAGGATCTCTGCATCCCAGAGACAGCCGTGTCCTTCCGAGTCAGGGAGAACAGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032201.8
ENSMUST00000088790.9
CDS CCA 72 bp CTGTCACTGGGAAGGACAGAGTCACCGTCTCTTTGTTaGCACCAGGGCCTGCCACTATGCACAAAGCCTCCA +
Preference number: 6 (lower is better)
Translates to: LSLGRTESPSLC*HQGLPLCTKPP
Trigger: TGGAGGCTTTGTGCATAGTGGCAGGCCCTGGTGCCAACAAAGAGACGGTGACTCTGTCCTTCCCAGTGACAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032201.8
ENSMUST00000088790.9
CDS CCA 72 bp GATGCAATGGGCGGCTTGTGCCCATGCTTGTGGTGGTaGCAGACACAGAAGATGGACAGCAGGATGGAGATG +
Preference number: 6 (lower is better)
Translates to: DAMGGLCPCLWW*QTQKMDSRMEM
Trigger: CATCTCCATCCTGCTGTCCATCTTCTGTGTCTGCCACCACCACAAGCATGGGCACAAGCCGCCCATTGCATC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032201.8
ENSMUST00000088790.9
CDS CAA 72 bp ACTGTCACTGGGAAGGACAGAGTCACCGTCTCTTTGTaGGCACCAGGGCCTGCCACTATGCACAAAGCCTCC +
Preference number: 6 (lower is better)
Translates to: TVTGKDRVTVSL*APGPATMHKAS
Trigger: GGAGGCTTTGTGCATAGTGGCAGGCCCTGGTGCCAACAAAGAGACGGTGACTCTGTCCTTCCCAGTGACAGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032201.8
ENSMUST00000088790.9
CDS CAA 72 bp ATTTCCGCTGATGCAATGGGCGGCTTGTGCCCATGCTaGTGGTGGTGGCAGACACAGAAGATGGACAGCAGG +
Preference number: 6 (lower is better)
Translates to: ISADAMGGLCPC*WWWQTQKMDSR
Trigger: CCTGCTGTCCATCTTCTGTGTCTGCCACCACCACAAGCATGGGCACAAGCCGCCCATTGCATCAGCGGAAAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032201.8
ENSMUST00000088790.9
CDS CAA 90 bp GTTGGAGAACCCAGGCCACCACATTCCTCACACTCGGGGCGCCTCTaGTTTACTGCACAGGACTTGGGGCAGCCTACTTCTTCAGTAATG +
Preference number: 6 (lower is better)
Translates to: VGEPRPPHSSHSGRL*FTAQDLGQPTSSVM
Trigger: CATTACTGAAGAAGTAGGCTGCCCCAAGTCCTGTGCAGTAAACAAGAGGCGCCCCGAGTGTGAGGAATGTGGTGGCCTGGGTTCTCCAAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032201.8
ENSMUST00000088790.9
CDS TCA 72 bp ACTGCATACCCCTCGAGATCTGCCAGGCGAAGGAGATaGGGTCACCCATGGTCAGTACCCTTTCATCTGGGT +
Preference number: 6 (lower is better)
Translates to: TAYPSRSARRRR*GHPWSVPFHLG
Trigger: ACCCAGATGAAAGGGTACTGACCATGGGTGACCTCATCTCCTTCGCCTGGCAGATCTCGAGGGGTATGCAGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032201.8
ENSMUST00000088790.9
CDS TCA 72 bp CTGGCCTCTCCATCCTGTGGCCTGTCTTCAGAAGGTTaGAGAGTCGTTCAGGAGGAATTCCAGGGTAGGGGT +
Preference number: 6 (lower is better)
Translates to: LASPSCGLSSEG*RVVQEEFQGRG
Trigger: ACCCCTACCCTGGAATTCCTCCTGAACGACTCTTCAACCTTCTGAAGACAGGCCACAGGATGGAGAGGCCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032201.8
ENSMUST00000088790.9
CDS GCA 72 bp GGACAGAGTCACCGTCTCTTTGTTGGCACCAGGGCCTaGCACTATGCACAAAGCCTCCAGCACATACTTCTC +
Preference number: 6 (lower is better)
Translates to: GQSHRLFVGTRA*HYAQSLQHILL
Trigger: GAGAAGTATGTGCTGGAGGCTTTGTGCATAGTGGCAGGCCCTGGTGCCAACAAAGAGACGGTGACTCTGTCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032201.8
ENSMUST00000088790.9
CDS CCA 72 bp GGGAGGCGTTTTCTTTCAGCATTTTCACAGCCACTGTaGTGTATCCTGCCCGGCCTTTCAGACGGAAGGCTG +
Preference number: 6 (lower is better)
Translates to: GRRFLSAFSQPL*CILPGLSDGRL
Trigger: CAGCCTTCCGTCTGAAAGGCCGGGCAGGATACACCACAGTGGCTGTGAAAATGCTGAAAGAAAACGCCTCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032201.8
ENSMUST00000088790.9
CDS CAA 72 bp TACACTGTCACTGGGAAGGACAGAGTCACCGTCTCTTaGTTGGCACCAGGGCCTGCCACTATGCACAAAGCC +
Preference number: 6 (lower is better)
Translates to: YTVTGKDRVTVS*LAPGPATMHKA
Trigger: GGCTTTGTGCATAGTGGCAGGCCCTGGTGCCAACAAAGAGACGGTGACTCTGTCCTTCCCAGTGACAGTGTA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032201.8
ENSMUST00000088790.9
CDS CAA 72 bp TCACACTCGGGGCGCCTCTTGTTTACTGCACAGGACTaGGGGCAGCCTACTTCTTCAGTAATGGATGTCCCC +
Preference number: 6 (lower is better)
Translates to: SHSGRLLFTAQD*GQPTSSVMDVP
Trigger: GGGGACATCCATTACTGAAGAAGTAGGCTGCCCCAAGTCCTGTGCAGTAAACAAGAGGCGCCCCGAGTGTGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032201.8
ENSMUST00000088790.9
CDS CAA 72 bp CACTGCAGCATCAGACGGTACATTTCCTCGCTGCAGTaGTCTGGCCTCTCCATCCTGTGGCCTGTCTTCAGA +
Preference number: 6 (lower is better)
Translates to: HCSIRRYISSLQ*SGLSILWPVFR
Trigger: TCTGAAGACAGGCCACAGGATGGAGAGGCCAGACAACTGCAGCGAGGAAATGTACCGTCTGATGCTGCAGTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032201.8
ENSMUST00000088790.9
CDS TCA 72 bp TGGAAGGCTGCAGCTTGTACTGGATGGAGACACCGCTaGACTCCTGGCAGTTTTCCACACAGACTTTCCCGA +
Preference number: 6 (lower is better)
Translates to: WKAAACTGWRHR*TPGSFPHRLSR
Trigger: TCGGGAAAGTCTGTGTGGAAAACTGCCAGGAGTTCAGCGGTGTCTCCATCCAGTACAAGCTGCAGCCTTCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032201.8
ENSMUST00000088790.9
CDS TCA 72 bp ATCCTGCCCGGCCTTTCAGACGGAAGGCTGTGGCCTTaGCAACTTTTCCAAACTCGCCTTCTCCCAGAGTTT +
Preference number: 6 (lower is better)
Translates to: ILPGLSDGRLWP*QLFQTRLLPEF
Trigger: AAACTCTGGGAGAAGGCGAGTTTGGAAAAGTTGTCAAGGCCACAGCCTTCCGTCTGAAAGGCCGGGCAGGAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032201.8
ENSMUST00000088790.9
CDS GCA 72 bp TTCTTTCAGCATTTTCACAGCCACTGTGGTGTATCCTaGCCGGCCTTTCAGACGGAAGGCTGTGGCCTTGAC +
Preference number: 6 (lower is better)
Translates to: FFQHFHSHCGVS*PAFQTEGCGLD
Trigger: GTCAAGGCCACAGCCTTCCGTCTGAAAGGCCGGGCAGGATACACCACAGTGGCTGTGAAAATGCTGAAAGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032201.8
ENSMUST00000088790.9
CDS CCA 72 bp TGCAGCTTGTACTGGATGGAGACACCGCTGAACTCCTaGCAGTTTTCCACACAGACTTTCCCGATCTGGGCA +
Preference number: 6 (lower is better)
Translates to: CSLYWMETPLNS*QFSTQTFPIWA
Trigger: TGCCCAGATCGGGAAAGTCTGTGTGGAAAACTGCCAGGAGTTCAGCGGTGTCTCCATCCAGTACAAGCTGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032201.8
ENSMUST00000088790.9
CDS CCA 72 bp CATCTTCTCCAGATCCTTGCTGATGTCAGCAAACACTaGCCTCTTGTCTGGCTCCTGCTTCCAGCACTGCAG +
Preference number: 6 (lower is better)
Translates to: HLLQILADVSKH*PLVWLLLPALQ
Trigger: CTGCAGTGCTGGAAGCAGGAGCCAGACAAGAGGCCAGTGTTTGCTGACATCAGCAAGGATCTGGAGAAGATG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032201.8
ENSMUST00000088790.9
CDS CAA 72 bp GCTGGTCTACATACAGCCTCTCCCAGTAAGCATCCCTaGAGAAATAGAGGCCCAGTGGGGCTTCTCCTAGCA +
Preference number: 6 (lower is better)
Translates to: AGLHTASPSKHP*RNRGPVGLLLA
Trigger: TGCTAGGAGAAGCCCCACTGGGCCTCTATTTCTCAAGGGATGCTTACTGGGAGAGGCTGTATGTAGACCAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032201.8
ENSMUST00000088790.9
CDS CAA 72 bp TATCCTGCCCGGCCTTTCAGACGGAAGGCTGTGGCCTaGACAACTTTTCCAAACTCGCCTTCTCCCAGAGTT +
Preference number: 6 (lower is better)
Translates to: YPARPFRRKAVA*TTFPNSPSPRV
Trigger: AACTCTGGGAGAAGGCGAGTTTGGAAAAGTTGTCAAGGCCACAGCCTTCCGTCTGAAAGGCCGGGCAGGATA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032201.8
ENSMUST00000088790.9
CDS CAA 90 bp ACTGTGGTGTATCCTGCCCGGCCTTTCAGACGGAAGGCTGTGGCCTaGACAACTTTTCCAAACTCGCCTTCTCCCAGAGTTTTCCCAAGA +
Preference number: 6 (lower is better)
Translates to: TVVYPARPFRRKAVA*TTFPNSPSPRVFPR
Trigger: TCTTGGGAAAACTCTGGGAGAAGGCGAGTTTGGAAAAGTTGTCAAGGCCACAGCCTTCCGTCTGAAAGGCCGGGCAGGATACACCACAGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032201.8
ENSMUST00000088790.9
CDS GCA 72 bp ACCACATTCCTCACACTCGGGGCGCCTCTTGTTTACTaGACAGGACTTGGGGCAGCCTACTTCTTCAGTAAT +
Preference number: 6 (lower is better)
Translates to: TTFLTLGAPLVY*TGLGAAYFFSN
Trigger: ATTACTGAAGAAGTAGGCTGCCCCAAGTCCTGTGCAGTAAACAAGAGGCGCCCCGAGTGTGAGGAATGTGGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032201.8
ENSMUST00000088790.9
CDS GCA 72 bp TTCATTTCTGCCAAGTACTGCATACCCCTCGAGATCTaGCAGGCGAAGGAGATGAGGTCACCCATGGTCAGT +
Preference number: 6 (lower is better)
Translates to: FISAKYCIPLEI*QAKEMRSPMVS
Trigger: ACTGACCATGGGTGACCTCATCTCCTTCGCCTGGCAGATCTCGAGGGGTATGCAGTACTTGGCAGAAATGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032201.8
ENSMUST00000088790.9
CDS CCA 72 bp GGAGCCATACTTGGCATACTCCACAATGAGAAGAAGTaGCCCATCCTGGCTGCAGGCCCCATACAACTTGAT +
Preference number: 6 (lower is better)
Translates to: GAILGILHNEKK*PILAAGPIQLD
Trigger: ATCAAGTTGTATGGGGCCTGCAGCCAGGATGGGCCACTTCTTCTCATTGTGGAGTATGCCAAGTATGGCTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032201.8
ENSMUST00000088790.9
CDS CAA 90 bp ACTCGGAAGGACACGGCTGTCTCTGGGATGCAGAGATCCTGGGCTTaGAAGGAGCTACAATTTGGGAAGGTGTCGTTGATGAAGGAGAAG +
Preference number: 6 (lower is better)
Translates to: TRKDTAVSGMQRSWA*KELQFGKVSLMKEK
Trigger: CTTCTCCTTCATCAACGACACCTTCCCAAATTGTAGCTCCTTCAAAGCCCAGGATCTCTGCATCCCAGAGACAGCCGTGTCCTTCCGAGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032201.8
ENSMUST00000088790.9
CDS CAA 90 bp CAGAGATCCTGGGCTTTGAAGGAGCTACAATTTGGGAAGGTGTCGTaGATGAAGGAGAAGTACACACGGGTACAGCCTGGCCAATGGCAT +
Preference number: 6 (lower is better)
Translates to: QRSWALKELQFGKVS*MKEKYTRVQPGQWH
Trigger: ATGCCATTGGCCAGGCTGTACCCGTGTGTACTTCTCCTTCATCAACGACACCTTCCCAAATTGTAGCTCCTTCAAAGCCCAGGATCTCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032201.8
ENSMUST00000088790.9
CDS TCA 72 bp TCCGAGGAAATTCCCACTTTGGATCCTCCGGGATCTTaGAAGAGTCCACAGGAACCTGGTTCTCCGTGGAAT +
Preference number: 6 (lower is better)
Translates to: SEEIPTLDPPGS*KSPQEPGSPWN
Trigger: ATTCCACGGAGAACCAGGTTCCTGTGGACTCTTTCAAGATCCCGGAGGATCCAAAGTGGGAATTTCCTCGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032201.8
ENSMUST00000088790.9
CDS GCA 72 bp AAGTCCCGATGTACAAGCTTCATTTCTGCCAAGTACTaGATACCCCTCGAGATCTGCCAGGCGAAGGAGATG +
Preference number: 6 (lower is better)
Translates to: KSRCTSFISAKY*IPLEICQAKEM
Trigger: CATCTCCTTCGCCTGGCAGATCTCGAGGGGTATGCAGTACTTGGCAGAAATGAAGCTTGTACATCGGGACTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032201.8
ENSMUST00000088790.9
CDS CCA 72 bp TTGGCATACTCCACAATGAGAAGAAGTGGCCCATCCTaGCTGCAGGCCCCATACAACTTGATGACATGTGGA +
Preference number: 6 (lower is better)
Translates to: LAYSTMRRSGPS*LQAPYNLMTCG
Trigger: TCCACATGTCATCAAGTTGTATGGGGCCTGCAGCCAGGATGGGCCACTTCTTCTCATTGTGGAGTATGCCAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032201.8
ENSMUST00000088790.9
CDS CAA 72 bp TGGGCTTTGAAGGAGCTACAATTTGGGAAGGTGTCGTaGATGAAGGAGAAGTACACACGGGTACAGCCTGGC +
Preference number: 6 (lower is better)
Translates to: WALKELQFGKVS*MKEKYTRVQPG
Trigger: GCCAGGCTGTACCCGTGTGTACTTCTCCTTCATCAACGACACCTTCCCAAATTGTAGCTCCTTCAAAGCCCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032201.8
ENSMUST00000088790.9
CDS CAA 72 bp AGAAGTGGCCCATCCTGGCTGCAGGCCCCATACAACTaGATGACATGTGGATGGTTGACTTGTTTCAGAAGG +
Preference number: 6 (lower is better)
Translates to: RSGPSWLQAPYN*MTCGWLTCFRR
Trigger: CCTTCTGAAACAAGTCAACCATCCACATGTCATCAAGTTGTATGGGGCCTGCAGCCAGGATGGGCCACTTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032201.8
ENSMUST00000088790.9
CDS CAA 90 bp CCATCCTGGCTGCAGGCCCCATACAACTTGATGACATGTGGATGGTaGACTTGTTTCAGAAGGTTGAACTCAGACAGCAGGTCTCGTAAC +
Preference number: 6 (lower is better)
Translates to: PSWLQAPYNLMTCGW*TCFRRLNSDSRSRN
Trigger: GTTACGAGACCTGCTGTCTGAGTTCAACCTTCTGAAACAAGTCAACCATCCACATGTCATCAAGTTGTATGGGGCCTGCAGCCAGGATGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032201.8
ENSMUST00000088790.9
CDS TCA 72 bp GCAGACTATCCCCTCCTAAGAGACTGTACTTCACACTaGTGTTGGGACAAAGGAACTGCACGGGTAACATGT +
Preference number: 6 (lower is better)
Translates to: ADYPLLRDCTSH*CWDKGTARVTC
Trigger: ACATGTTACCCGTGCAGTTCCTTTGTCCCAACATCAGTGTGAAGTACAGTCTCTTAGGAGGGGATAGTCTGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032201.8
ENSMUST00000088790.9
CDS TCA 72 bp AGATGTGATCGAAAAGGGACTCAATTGCCATCCACTTaGCGGGAATCCGGCCCTTGCTTTTCTTCACATAGG +
Preference number: 6 (lower is better)
Translates to: RCDRKGTQLPST*RESGPCFSSHR
Trigger: CCTATGTGAAGAAAAGCAAGGGCCGGATTCCCGTCAAGTGGATGGCAATTGAGTCCCTTTTCGATCACATCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032201.8
ENSMUST00000088790.9
CDS CCA 72 bp GATGCAGAGATCCTGGGCTTTGAAGGAGCTACAATTTaGGAAGGTGTCGTTGATGAAGGAGAAGTACACACG +
Preference number: 6 (lower is better)
Translates to: DAEILGFEGATI*EGVVDEGEVHT
Trigger: CGTGTGTACTTCTCCTTCATCAACGACACCTTCCCAAATTGTAGCTCCTTCAAAGCCCAGGATCTCTGCATC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032201.8
ENSMUST00000088790.9
CDS CAA 72 bp CTATCCCCTCCTAAGAGACTGTACTTCACACTGATGTaGGGACAAAGGAACTGCACGGGTAACATGTGGAAG +
Preference number: 6 (lower is better)
Translates to: LSPPKRLYFTLM*GQRNCTGNMWK
Trigger: CTTCCACATGTTACCCGTGCAGTTCCTTTGTCCCAACATCAGTGTGAAGTACAGTCTCTTAGGAGGGGATAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032201.8
ENSMUST00000088790.9
CDS CAA 72 bp GGCCCCATACAACTTGATGACATGTGGATGGTTGACTaGTTTCAGAAGGTTGAACTCAGACAGCAGGTCTCG +
Preference number: 6 (lower is better)
Translates to: GPIQLDDMWMVD*FQKVELRQQVS
Trigger: CGAGACCTGCTGTCTGAGTTCAACCTTCTGAAACAAGTCAACCATCCACATGTCATCAAGTTGTATGGGGCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032201.8
ENSMUST00000088790.9
CDS CAA 90 bp CCATACAACTTGATGACATGTGGATGGTTGACTTGTTTCAGAAGGTaGAACTCAGACAGCAGGTCTCGTAACTCACTCTGGGAGGCGTTT +
Preference number: 6 (lower is better)
Translates to: PYNLMTCGWLTCFRR*NSDSRSRNSLWEAF
Trigger: AAACGCCTCCCAGAGTGAGTTACGAGACCTGCTGTCTGAGTTCAACCTTCTGAAACAAGTCAACCATCCACATGTCATCAAGTTGTATGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032201.8
ENSMUST00000088790.9
CDS CCA 72 bp ATCCTGGCTGCAGGCCCCATACAACTTGATGACATGTaGATGGTTGACTTGTTTCAGAAGGTTGAACTCAGA +
Preference number: 6 (lower is better)
Translates to: ILAAGPIQLDDM*MVDLFQKVELR
Trigger: TCTGAGTTCAACCTTCTGAAACAAGTCAACCATCCACATGTCATCAAGTTGTATGGGGCCTGCAGCCAGGAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032201.8
ENSMUST00000088790.9
CDS CAA 72 bp TTGATGACATGTGGATGGTTGACTTGTTTCAGAAGGTaGAACTCAGACAGCAGGTCTCGTAACTCACTCTGG +
Preference number: 6 (lower is better)
Translates to: LMTCGWLTCFRR*NSDSRSRNSLW
Trigger: CCAGAGTGAGTTACGAGACCTGCTGTCTGAGTTCAACCTTCTGAAACAAGTCAACCATCCACATGTCATCAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032201.8
ENSMUST00000088790.9