Pregenerated sensors for RESP18 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000033061Ensembl transcript IDs: ENSMUST00000039534.11, ENSMUST00000186229.2
Found 45 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CAA 90 bp | GGGAATGGCCCAAAGAAACCCTTGGTAGGATGGGTGGCCTCTTGTTaGGTGGCCTTTGGGATTACTTTGGTGGTAAAGCATCGGTCCCTG | + |
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Preference number: 2 (lower is better) Translates to: GNGPKKPLVGWVASC*VAFGITLVVKHRSL Trigger: CAGGGACCGATGCTTTACCACCAAAGTAATCCCAAAGGCCACCAAACAAGAGGCCACCCATCCTACCAAGGGTTTCTTTGGGCCATTCCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000186229.2 |
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| 3UTR CAA 90 bp | AGTGGGGAATGGCCCAAAGAAACCCTTGGTAGGATGGGTGGCCTCTaGTTTGGTGGCCTTTGGGATTACTTTGGTGGTAAAGCATCGGTC | + |
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Preference number: 2 (lower is better) Translates to: SGEWPKETLGRMGGL*FGGLWDYFGGKASV Trigger: GACCGATGCTTTACCACCAAAGTAATCCCAAAGGCCACCAAACAAGAGGCCACCCATCCTACCAAGGGTTTCTTTGGGCCATTCCCCACT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000186229.2 |
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| 3UTR-3UTR CCA 90 bp | GAGGCCCACAGTGGGGAATGGCCCAAAGAAACCCTTGGTAGGATGGGTGGCCTCTTGTTTGGTGGCCTTTaGGATTACTTTGGTGGTAAA | + |
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Preference number: 2 (lower is better) Translates to: EAHSGEWPKETLGRMGGLLFGGL*DYFGGK Trigger: TTTACCACCAAAGTAATCCCAAAGGCCACCAAACAA...GAGGCCACCCATCCTACCAAGGGTTTCTTTGGGCCATTCCCCACTGTGGGCCTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000186229.2 |
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| 3UTR CAA 90 bp | ACTTTAATTATTCATATTTGGGTCATCCAAGAATTGCCCCTTGGATaGGAGGGCATTGAGGAGGTTCCCGGAGAAAGGGATCTTATGCAA | + |
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Preference number: 2 (lower is better) Translates to: TLIIHIWVIQELPLG*EGIEEVPGERDLMQ Trigger: TTGCATAAGATCCCTTTCTCCGGGAACCTCCTCAATGCCCTCCAATCCAAGGGGCAATTCTTGGATGACCCAAATATGAATAATTAAAGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039534.11 |
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| 3UTR CCA 72 bp | TCAGTCAGCAACAAGGTTGAGGCCCACAGTGGGGAATaGCCCAAAGAAACCCTTGGTAGGATGGGTGGCCTC | + |
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Preference number: 3 (lower is better) Translates to: SVSNKVEAHSGE*PKETLGRMGGL Trigger: GAGGCCACCCATCCTACCAAGGGTTTCTTTGGGCCATTCCCCACTGTGGGCCTCAACCTTGTTGCTGACTGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000186229.2 |
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| 3UTR-3UTR CAA 90 bp | GCAACAAGGTTGAGGCCCACAGTGGGGAATGGCCCAAAGAAACCCTTGGTAGGATGGGTGGCCTCTTGTTaGGTGGCCTTTGGGATTACT | + |
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Preference number: 3 (lower is better) Translates to: ATRLRPTVGNGPKKPLVGWVASC*VAFGIT Trigger: AGTAATCCCAAAGGCCACCAAACAAGAGGCCACCCA...TCCTACCAAGGGTTTCTTTGGGCCATTCCCCACTGTGGGCCTCAACCTTGTTGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000186229.2 |
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| 3UTR-3UTR CAA 90 bp | GCAACAAGGTTGAGGCCCACAGTGGGGAATGGCCCAAAGAAACCCTTGGTAGGAGCCTTTGGGATTACTTaGGTGGTAAAGCATCGGTCC | + |
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Preference number: 3 (lower is better) Translates to: ATRLRPTVGNGPKKPLVGAFGIT*VVKHRS Trigger: GGACCGATGCTTTACCACCAAAGTAATCCCAAAGGC...TCCTACCAAGGGTTTCTTTGGGCCATTCCCCACTGTGGGCCTCAACCTTGTTGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000186229.2 |
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| 3UTR CCA 72 bp | TTCATATTTGGGTCATCCAAGAATTGCCCCTTGGATTaGAGGGCATTGAGGAGGTTCCCGGAGAAAGGGATC | + |
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Preference number: 3 (lower is better) Translates to: FIFGSSKNCPLD*RALRRFPEKGI Trigger: GATCCCTTTCTCCGGGAACCTCCTCAATGCCCTCCAATCCAAGGGGCAATTCTTGGATGACCCAAATATGAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039534.11 |
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| CDS-3UTR TCA 90 bp | GGCCTCTTGTTTGGTGGCCTTTGGGATTACTTTGGTGGTAAAGCATCGGTCCCTAAGCAGACCAGTAGCTaGAGATGCCCGGAGCCCGCG | + |
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Preference number: 4 (lower is better) Translates to: GLLFGGLWDYFGGKASVPKQTSS*RCPEPA Trigger: CGCGGGCTCCGGGCATCTTCAGCTACTGGTCTGCTT...AGGGACCGATGCTTTACCACCAAAGTAATCCCAAAGGCCACCAAACAAGAGGCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000186229.2 |
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| CDS-3UTR GCA 90 bp | CCCACAGTGGGGAATGGCCCAAAGAAACCCTTGGTAGGATGGGTGGCCTCTTGTATAGGCTATGTCATCTaGCCAGAACATGCCTTCGGG | + |
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Preference number: 4 (lower is better) Translates to: PTVGNGPKKPLVGWVASCIGYVI*PEHAFG Trigger: CCCGAAGGCATGTTCTGGGCAGATGACATAGCCTAT...ACAAGAGGCCACCCATCCTACCAAGGGTTTCTTTGGGCCATTCCCCACTGTGGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000186229.2 |
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| CDS-3UTR CCA 90 bp | GAGGCCCACAGTGGGGAATGGCCCAAAGAAACCCTTGGTAGGATGGGTGGCCTCGAAGCAATAAGTCCTTaGAATGTCCAGAGCTGTTCC | + |
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Preference number: 4 (lower is better) Translates to: EAHSGEWPKETLGRMGGLEAISP*NVQSCS Trigger: GGAACAGCTCTGGACATTCCAAGGACTTATTGCTTC...GAGGCCACCCATCCTACCAAGGGTTTCTTTGGGCCATTCCCCACTGTGGGCCTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000186229.2 |
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| 3UTR CAA 72 bp | GGGTCATCCAAGAATTGCCCCTTGGATTGGAGGGCATaGAGGAGGTTCCCGGAGAAAGGGATCTTATGCAAC | + |
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Preference number: 4 (lower is better) Translates to: GSSKNCPLDWRA*RRFPEKGILCN Trigger: GTTGCATAAGATCCCTTTCTCCGGGAACCTCCTCAATGCCCTCCAATCCAAGGGGCAATTCTTGGATGACCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039534.11 |
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| CDS-3UTR GCA 90 bp | CCCCTTGGATTGGAGGGCATTGAGGAGGTTCCCGGAGAAAGGGATCTTATGCAACATCTGCCCAGAACATaGCTTCGGGTACAATCTGGT | + |
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Preference number: 4 (lower is better) Translates to: PLGLEGIEEVPGERDLMQHLPRT*LRVQSG Trigger: ACCAGATTGTACCCGAAGGCATGTTCTGGGCAGATG...TTGCATAAGATCCCTTTCTCCGGGAACCTCCTCAATGCCCTCCAATCCAAGGGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039534.11 |
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| CDS-3UTR GCA 90 bp | AGTGGGGAATGGCCCAAAGAAACCCTTGGTAGGATGGGTGGCCTCTTGTTTGGTCATCTGCCCAGAACATaGCTTCGGGTACAATCTGGT | + |
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Preference number: 4 (lower is better) Translates to: SGEWPKETLGRMGGLLFGHLPRT*LRVQSG Trigger: ACCAGATTGTACCCGAAGGCATGTTCTGGGCAGATG...ACCAAACAAGAGGCCACCCATCCTACCAAGGGTTTCTTTGGGCCATTCCCCACT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000186229.2 |
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| CDS-3UTR GCA 90 bp | CCCCTTGGATTGGAGGGCATTGAGGAGGTTCCCGGAGAAAGGGATCTTATGCAACCTTCATATCCTTCCTaGATGGATACTGGGGGTGGA | + |
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Preference number: 4 (lower is better) Translates to: PLGLEGIEEVPGERDLMQPSYPS*MDTGGG Trigger: TCCACCCCCAGTATCCATGCAGGAAGGATATGAAGG...TTGCATAAGATCCCTTTCTCCGGGAACCTCCTCAATGCCCTCCAATCCAAGGGG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000039534.11 |
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| CDS-3UTR CCA 90 bp | CCCTTGGATTGGAGGGCATTGAGGAGGTTCCCGGAGAAAGGGATCTTATGCAACGGGTGGCCTCTTGTTTaGTGGCCTTTGGGATTACTT | + |
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Preference number: 4 (lower is better) Translates to: PLDWRALRRFPEKGILCNGWPLV*WPLGLL Trigger: AAGTAATCCCAAAGGCCACCAAACAAGAGGCCACCC...GTTGCATAAGATCCCTTTCTCCGGGAACCTCCTCAATGCCCTCCAATCCAAGGG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039534.11 |
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| CDS-3UTR CCA 90 bp | GAATTGCCCCTTGGATTGGAGGGCATTGAGGAGGTTCCCGGAGAAAGGGATCTTGAAGCAATAAGTCCTTaGAATGTCCAGAGCTGTTCC | + |
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Preference number: 4 (lower is better) Translates to: ELPLGLEGIEEVPGERDLEAISP*NVQSCS Trigger: GGAACAGCTCTGGACATTCCAAGGACTTATTGCTTC...AAGATCCCTTTCTCCGGGAACCTCCTCAATGCCCTCCAATCCAAGGGGCAATTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039534.11 |
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| CDS-3UTR CCA 90 bp | TTGGATTGGAGGGCATTGAGGAGGTTCCCGGAGAAAGGGATCTTATGCAACGAGTGGCCTCTTGTTTGGTaGCCTTTGGGATTACTTTGG | + |
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Preference number: 4 (lower is better) Translates to: LDWRALRRFPEKGILCNEWPLVW*PLGLLW Trigger: CCAAAGTAATCCCAAAGGCCACCAAACAAGAGGCCA...CTCGTTGCATAAGATCCCTTTCTCCGGGAACCTCCTCAATGCCCTCCAATCCAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039534.11 |
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| 3UTR CAA 72 bp | TGGCCCAAAGAAACCCTTGGTAGGATGGGTGGCCTCTaGTTTGGTGGCCTTTGGGATTACTTTGGTGGTAAA | + |
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Preference number: 4 (lower is better) Translates to: WPKETLGRMGGL*FGGLWDYFGGK Trigger: TTTACCACCAAAGTAATCCCAAAGGCCACCAAACAAGAGGCCACCCATCCTACCAAGGGTTTCTTTGGGCCA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000186229.2 |
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| 3UTR CAA 72 bp | ATTCATATTTGGGTCATCCAAGAATTGCCCCTTGGATaGGAGGGCATTGAGGAGGTTCCCGGAGAAAGGGAT | + |
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Preference number: 4 (lower is better) Translates to: IHIWVIQELPLG*EGIEEVPGERD Trigger: ATCCCTTTCTCCGGGAACCTCCTCAATGCCCTCCAATCCAAGGGGCAATTCTTGGATGACCCAAATATGAAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039534.11 |
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| CDS-3UTR TCA 90 bp | TCAACTTTAATTATTCATATTTGGGTCATCCAAGAATTGCCCCTTGGATTGGAGAAGCAGACCAGTAGCTaGAGATGCCCGGAGCCCGCG | + |
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Preference number: 4 (lower is better) Translates to: STLIIHIWVIQELPLGLEKQTSS*RCPEPA Trigger: CGCGGGCTCCGGGCATCTTCAGCTACTGGTCTGCTT...CTCCAATCCAAGGGGCAATTCTTGGATGACCCAAATATGAATAATTAAAGTTGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039534.11 |
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| CDS-3UTR CCA 90 bp | TGGCCCAAAGAAACCCTTGGTAGGATGGGTGGCCTCTTGTTTGGTGGCCTTTGGTCGGGTACAATCTGGTaGAATATAAGTTGTAAGTAC | + |
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Preference number: 4 (lower is better) Translates to: WPKETLGRMGGLLFGGLWSGTIW*NISCKY Trigger: GTACTTACAACTTATATTCCACCAGATTGTACCCGA...CCAAAGGCCACCAAACAAGAGGCCACCCATCCTACCAAGGGTTTCTTTGGGCCA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000186229.2 |
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| CDS-3UTR CCA 90 bp | TTGGATTGGAGGGCATTGAGGAGGTTCCCGGAGAAAGGGATCTTATGCAACGAGGGTGCTCCACCTTTTTaGTCATTAACTCATAGGCTA | + |
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Preference number: 4 (lower is better) Translates to: LDWRALRRFPEKGILCNEGAPPF*SLTHRL Trigger: TAGCCTATGAGTTAATGACCAAAAAGGTGGAGCACC...CTCGTTGCATAAGATCCCTTTCTCCGGGAACCTCCTCAATGCCCTCCAATCCAA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000039534.11 |
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| CDS-3UTR CCA 90 bp | CCCTTGGATTGGAGGGCATTGAGGAGGTTCCCGGAGAAAGGGATCTTATGCAACTTGTTTGGTGGCCTTTaGGATTACTTTGGTGGTAAA | + |
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Preference number: 4 (lower is better) Translates to: PLDWRALRRFPEKGILCNLFGGL*DYFGGK Trigger: TTTACCACCAAAGTAATCCCAAAGGCCACCAAACAA...GTTGCATAAGATCCCTTTCTCCGGGAACCTCCTCAATGCCCTCCAATCCAAGGG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039534.11 |
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| CDS-3UTR CCA 90 bp | ATGGGTGGCCTCTTGTTTGGTGGCCTTTGGGATTACTTTGGTGGTAAAGCATCGGGTGCTCCACCTTTTTaGTCATTAACTCATAGGCTA | + |
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Preference number: 4 (lower is better) Translates to: MGGLLFGGLWDYFGGKASGAPPF*SLTHRL Trigger: TAGCCTATGAGTTAATGACCAAAAAGGTGGAGCACC...CGATGCTTTACCACCAAAGTAATCCCAAAGGCCACCAAACAAGAGGCCACCCAT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000186229.2 |
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| CDS-3UTR GCA 90 bp | ATTATTCATATTTGGGTCATCCAAGAATTGCCCCTTGGATTGGAGGGCATTGAGATAGGCTATGTCATCTaGCCAGAACATGCCTTCGGG | + |
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Preference number: 4 (lower is better) Translates to: IIHIWVIQELPLGLEGIEIGYVI*PEHAFG Trigger: CCCGAAGGCATGTTCTGGGCAGATGACATAGCCTAT...CTCAATGCCCTCCAATCCAAGGGGCAATTCTTGGATGACCCAAATATGAATAAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039534.11 |
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| CDS-3UTR CCA 90 bp | TTCATATTTGGGTCATCCAAGAATTGCCCCTTGGATTGGAGGGCATTGAGGAGGCCTTCGGGTACAATCTaGTGGAATATAAGTTGTAAG | + |
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Preference number: 4 (lower is better) Translates to: FIFGSSKNCPLDWRALRRPSGTI*WNISCK Trigger: CTTACAACTTATATTCCACCAGATTGTACCCGAAGG...CCTCCTCAATGCCCTCCAATCCAAGGGGCAATTCTTGGATGACCCAAATATGAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039534.11 |
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| 3UTR CAA 72 bp | TCAACTTTAATTATTCATATTTGGGTCATCCAAGAATaGCCCCTTGGATTGGAGGGCATTGAGGAGGTTCCC | + |
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Preference number: 4 (lower is better) Translates to: STLIIHIWVIQE*PLGLEGIEEVP Trigger: GGGAACCTCCTCAATGCCCTCCAATCCAAGGGGCAATTCTTGGATGACCCAAATATGAATAATTAAAGTTGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039534.11 |
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| CDS-3UTR GCA 90 bp | ATCAACTTTAATTATTCATATTTGGGTCATCCAAGAATTGCCCCTTGGATTGGAGTTTCTCCTCTTGCTTaGTCCTCACCCCAGCGTTTG | + |
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Preference number: 4 (lower is better) Translates to: INFNYSYLGHPRIAPWIGVSPLA*SSPQRL Trigger: CAAACGCTGGGGTGAGGAGCAAGCAAGAGGAGAAAC...TCCAATCCAAGGGGCAATTCTTGGATGACCCAAATATGAATAATTAAAGTTGAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000039534.11 |
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| CDS-3UTR CCA 90 bp | TCAACTTTAATTATTCATATTTGGGTCATCCAAGAATTGCCCCTTGGATTGGAGTCGGGTACAATCTGGTaGAATATAAGTTGTAAGTAC | + |
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Preference number: 4 (lower is better) Translates to: STLIIHIWVIQELPLGLESGTIW*NISCKY Trigger: GTACTTACAACTTATATTCCACCAGATTGTACCCGA...CTCCAATCCAAGGGGCAATTCTTGGATGACCCAAATATGAATAATTAAAGTTGA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039534.11 |
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| CDS-3UTR CAA 90 bp | TCATCCAAGAATTGCCCCTTGGATTGGAGGGCATTGAGGAGGTTCCCGGAGAAATGGGTGGCCTCTTGTTaGGTGGCCTTTGGGATTACT | + |
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Preference number: 5 (lower is better) Translates to: SSKNCPLDWRALRRFPEKWVASC*VAFGIT Trigger: AGTAATCCCAAAGGCCACCAAACAAGAGGCCACCCA...TTTCTCCGGGAACCTCCTCAATGCCCTCCAATCCAAGGGGCAATTCTTGGATGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039534.11 |
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| CDS-3UTR CAA 90 bp | ATTCATATTTGGGTCATCCAAGAATTGCCCCTTGGATTGGAGGGCATTGAGGAGCAGTCAGCAACAAGGTaGAGGCCCACAGTGGGGAAT | + |
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Preference number: 5 (lower is better) Translates to: IHIWVIQELPLGLEGIEEQSATR*RPTVGN Trigger: ATTCCCCACTGTGGGCCTCAACCTTGTTGCTGACTG...CTCCTCAATGCCCTCCAATCCAAGGGGCAATTCTTGGATGACCCAAATATGAAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000039534.11 |
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| CDS-3UTR CAA 90 bp | ATTCATATTTGGGTCATCCAAGAATTGCCCCTTGGATTGGAGGGCATTGAGGAGGCCTTTGGGATTACTTaGGTGGTAAAGCATCGGTCC | + |
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Preference number: 5 (lower is better) Translates to: IHIWVIQELPLGLEGIEEAFGIT*VVKHRS Trigger: GGACCGATGCTTTACCACCAAAGTAATCCCAAAGGC...CTCCTCAATGCCCTCCAATCCAAGGGGCAATTCTTGGATGACCCAAATATGAAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039534.11 |
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| CDS CCA 90 bp | AACATGCCTTCGGGTACAATCTGGTGGAATATAAGTTGTAAGTACTaGAAGACTGAAGCAATAAGTCCTTGGAATGTCCAGAGCTGTTCC | + |
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Preference number: 5 (lower is better) Translates to: NMPSGTIWWNISCKY*KTEAISPWNVQSCS Trigger: GGAACAGCTCTGGACATTCCAAGGACTTATTGCTTCAGTCTTCCAGTACTTACAACTTATATTCCACCAGATTGTACCCGAAGGCATGTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000039534.11 ENSMUST00000186229.2 |
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| CDS GCA 72 bp | GGCCCTGACCATCGTGGGCGTTTATGTCGCTGCAGCTaGCTGGACGACTGTAAAGCAGAAGGAAGCAGACCA | + |
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Preference number: 6 (lower is better) Translates to: GPDHRGRLCRCS*LDDCKAEGSRP Trigger: TGGTCTGCTTCCTTCTGCTTTACAGTCGTCCAGGCAGCTGCAGCGACATAAACGCCCACGATGGTCAGGGCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000039534.11 ENSMUST00000186229.2 |
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| CDS CCA 72 bp | TCTCCTCTTGCTTGCTCCTCACCCCAGCGTTTGCCGTaGGGGAAACTGCCTTCATATCCTTCCTGCATGGAT | + |
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Preference number: 6 (lower is better) Translates to: SPLACSSPQRLP*GKLPSYPSCMD Trigger: ATCCATGCAGGAAGGATATGAAGGCAGTTTCCCCCACGGCAAACGCTGGGGTGAGGAGCAAGCAAGAGGAGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000039534.11 |
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| CDS GCA 72 bp | AAGTTTCTCCTCTTGCTTGCTCCTCACCCCAGCGTTTaGCGTGGGGGAAACTGCCTTCATATCCTTCCTGCA | + |
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Preference number: 6 (lower is better) Translates to: KFLLLLAPHPSV*RGGNCLHILPA Trigger: TGCAGGAAGGATATGAAGGCAGTTTCCCCCACGGCAAACGCTGGGGTGAGGAGCAAGCAAGAGGAGAAACTT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000039534.11 |
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| CDS CCA 72 bp | ACCTTGACTGTTGGACTCTCACCCCAGCGTTTGCCGTaGGGGAAACTGCCTTCATATCCTTCCTGCATGGAT | + |
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Preference number: 6 (lower is better) Translates to: TLTVGLSPQRLP*GKLPSYPSCMD Trigger: ATCCATGCAGGAAGGATATGAAGGCAGTTTCCCCCACGGCAAACGCTGGGGTGAGAGTCCAACAGTCAAGGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000186229.2 |
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| CDS CAA 90 bp | TTGGTAGGATGGGTGGCCTCTTGTTTGGTGGCCTTTGGGATTACTTaGGTGGTAAAGCATCGGTCCCTGTTCACCTTGACTGTTGGACTC | + |
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Preference number: 6 (lower is better) Translates to: LVGWVASCLVAFGIT*VVKHRSLFTLTVGL Trigger: GAGTCCAACAGTCAAGGTGAACAGGGACCGATGCTTTACCACCAAAGTAATCCCAAAGGCCACCAAACAAGAGGCCACCCATCCTACCAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039534.11 |
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| CDS CCA 72 bp | ACTGCCTTCATATCCTTCCTGCATGGATACTGGGGGTaGAGTCTGCTGAGGTGCTCCACCTTTTTGGTCATT | + |
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Preference number: 6 (lower is better) Translates to: TAFISFLHGYWG*SLLRCSTFLVI Trigger: AATGACCAAAAAGGTGGAGCACCTCAGCAGACTCCACCCCCAGTATCCATGCAGGAAGGATATGAAGGCAGT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000039534.11 ENSMUST00000186229.2 |
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| CDS CCA 72 bp | CTTGGTAGGATGGGTGGCCTCTTGTTTGGTGGCCTTTaGGATTACTTTGGTGGTAAAGCATCGGTCCCTGTT | + |
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Preference number: 6 (lower is better) Translates to: LGRMGGLLFGGL*DYFGGKASVPV Trigger: AACAGGGACCGATGCTTTACCACCAAAGTAATCCCAAAGGCCACCAAACAAGAGGCCACCCATCCTACCAAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039534.11 |
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| CDS CAA 72 bp | TGGGTGGCCTCTTGTTTGGTGGCCTTTGGGATTACTTaGGTGGTAAAGCATCGGTCCCTGTTCACCTTGACT | + |
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Preference number: 6 (lower is better) Translates to: WVASCLVAFGIT*VVKHRSLFTLT Trigger: AGTCAAGGTGAACAGGGACCGATGCTTTACCACCAAAGTAATCCCAAAGGCCACCAAACAAGAGGCCACCCA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039534.11 |
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| CDS TCA 72 bp | TATCCTTCCTGCATGGATACTGGGGGTGGAGTCTGCTaGGGTGCTCCACCTTTTTGGTCATTAACTCATAGG | + |
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Preference number: 6 (lower is better) Translates to: YPSCMDTGGGVC*GAPPFWSLTHR Trigger: CCTATGAGTTAATGACCAAAAAGGTGGAGCACCTCAGCAGACTCCACCCCCAGTATCCATGCAGGAAGGATA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000039534.11 ENSMUST00000186229.2 |
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| CDS CCA 72 bp | ATGTCATCTGCCCAGAACATGCCTTCGGGTACAATCTaGTGGAATATAAGTTGTAAGTACTGGAAGACTGAA | + |
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Preference number: 6 (lower is better) Translates to: MSSAQNMPSGTI*WNISCKYWKTE Trigger: TTCAGTCTTCCAGTACTTACAACTTATATTCCACCAGATTGTACCCGAAGGCATGTTCTGGGCAGATGACAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000039534.11 ENSMUST00000186229.2 |
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| CDS CCA 72 bp | TCGGGTACAATCTGGTGGAATATAAGTTGTAAGTACTaGAAGACTGAAGCAATAAGTCCTTGGAATGTCCAG | + |
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Preference number: 6 (lower is better) Translates to: SGTIWWNISCKY*KTEAISPWNVQ Trigger: CTGGACATTCCAAGGACTTATTGCTTCAGTCTTCCAGTACTTACAACTTATATTCCACCAGATTGTACCCGA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000039534.11 ENSMUST00000186229.2 |
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