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Pregenerated sensors for RERGL (Mus musculus)

Ensembl gene IDs: ENSMUSG00000092164

Ensembl transcript IDs: ENSMUST00000170650.3

Found 12 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS GCA 90 bp GCAGACAGCTCGCAGAACTGGCAGCGGAAATCAATCGCTAGCTTTTaGCCTTCTTCCCAGCCAACCTCTCGCATGTGGCAGAGGTCTTGC +
Preference number: 5 (lower is better)
Translates to: ADSSQNWQRKSIASF*PSSQPTSRMWQRSC
Trigger: GCAAGACCTCTGCCACATGCGAGAGGTTGGCTGGGAAGAAGGGCAAAAGCTAGCGATTGATTTCCGCTGCCAGTTCTGCGAGCTGTCTGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170650.3
CDS GCA 90 bp ATGTCTTTGATGAGTCTGAGAAACATCACCTCGACCTCCAAGGACTaGTCTGCTGCAGACAGCTCGCAGAACTGGCAGCGGAAATCAATC +
Preference number: 5 (lower is better)
Translates to: MSLMSLRNITSTSKD*SAADSSQNWQRKSI
Trigger: GATTGATTTCCGCTGCCAGTTCTGCGAGCTGTCTGCAGCAGAGCAGTCCTTGGAGGTCGAGGTGATGTTTCTCAGACTCATCAAAGACAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170650.3
CDS GCA 72 bp ATGAGTCTGAGAAACATCACCTCGACCTCCAAGGACTaGTCTGCTGCAGACAGCTCGCAGAACTGGCAGCGG +
Preference number: 6 (lower is better)
Translates to: MSLRNITSTSKD*SAADSSQNWQR
Trigger: CCGCTGCCAGTTCTGCGAGCTGTCTGCAGCAGAGCAGTCCTTGGAGGTCGAGGTGATGTTTCTCAGACTCAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170650.3
CDS GCA 72 bp TCGCAGAACTGGCAGCGGAAATCAATCGCTAGCTTTTaGCCTTCTTCCCAGCCAACCTCTCGCATGTGGCAG +
Preference number: 6 (lower is better)
Translates to: SQNWQRKSIASF*PSSQPTSRMWQ
Trigger: CTGCCACATGCGAGAGGTTGGCTGGGAAGAAGGGCAAAAGCTAGCGATTGATTTCCGCTGCCAGTTCTGCGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170650.3
CDS GCA 72 bp GAGAAACATCACCTCGACCTCCAAGGACTGCTCTGCTaGAGACAGCTCGCAGAACTGGCAGCGGAAATCAAT +
Preference number: 6 (lower is better)
Translates to: EKHHLDLQGLLC*RQLAELAAEIN
Trigger: ATTGATTTCCGCTGCCAGTTCTGCGAGCTGTCTGCAGCAGAGCAGTCCTTGGAGGTCGAGGTGATGTTTCTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170650.3
CDS CCA 72 bp AGCTGGTTCCACCACCCTTTTACAATGAGTCGTCGGTaGCTCCCGAATTCTGTAGATAAGGGCTTGCGCAAA +
Preference number: 6 (lower is better)
Translates to: SWFHHPFTMSRR*LPNSVDKGLRK
Trigger: TTTGCGCAAGCCCTTATCTACAGAATTCGGGAGCCACCGACGACTCATTGTAAAAGGGTGGTGGAACCAGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170650.3
CDS TCA 72 bp CAATCAGAAAGCCATCTGCCCAGTGCAGCTCACTTGTaGGTGAGCATTTTGCTTTCTGTGGTTGAGAACACG +
Preference number: 6 (lower is better)
Translates to: QSESHLPSAAHL*VSILLSVVENT
Trigger: CGTGTTCTCAACCACAGAAAGCAAAATGCTCACTCACAAGTGAGCTGCACTGGGCAGATGGCTTTCTGATTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170650.3
CDS CAA 90 bp TTTACAATGAGTCGTCGGTGGCTCCCGAATTCTGTAGATAAGGGCTaGCGCAAAAGCAAAGGAAGGCCTGTTGCTGATGTCGTACACAAT +
Preference number: 6 (lower is better)
Translates to: FTMSRRWLPNSVDKG*RKSKGRPVADVVHN
Trigger: ATTGTGTACGACATCAGCAACAGGCCTTCCTTTGCTTTTGCGCAAGCCCTTATCTACAGAATTCGGGAGCCACCGACGACTCATTGTAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170650.3
CDS GCA 72 bp CTGATGTCGTACACAATCAGAAAGCCATCTGCCCAGTaGAGCTCACTTGTGAGTGAGCATTTTGCTTTCTGT +
Preference number: 6 (lower is better)
Translates to: LMSYTIRKPSAQ*SSLVSEHFAFC
Trigger: ACAGAAAGCAAAATGCTCACTCACAAGTGAGCTGCACTGGGCAGATGGCTTTCTGATTGTGTACGACATCAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170650.3
CDS CAA 90 bp CTGGGTCTTCTCTTCTCCTTATGTTTGAAGATCATCAGAATGTCTTaGATGAGTCTGAGAAACATCACCTCGACCTCCAAGGACTGCTCT +
Preference number: 6 (lower is better)
Translates to: LGLLFSLCLKIIRMS*MSLRNITSTSKDCS
Trigger: AGAGCAGTCCTTGGAGGTCGAGGTGATGTTTCTCAGACTCATCAAAGACATTCTGATGATCTTCAAACATAAGGAGAAGAGAAGACCCAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170650.3
CDS CAA 72 bp CTCTTCTCCTTATGTTTGAAGATCATCAGAATGTCTTaGATGAGTCTGAGAAACATCACCTCGACCTCCAAG +
Preference number: 6 (lower is better)
Translates to: LFSLCLKIIRMS*MSLRNITSTSK
Trigger: CTTGGAGGTCGAGGTGATGTTTCTCAGACTCATCAAAGACATTCTGATGATCTTCAAACATAAGGAGAAGAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170650.3
CDS CAA 72 bp GATTCAAAATTAGAAGCATATTCCCCAATGAATCGCTaGGTAAGGAACCTTACTGTAAGAGCTGATTTCCCT +
Preference number: 6 (lower is better)
Translates to: DSKLEAYSPMNR*VRNLTVRADFP
Trigger: AGGGAAATCAGCTCTTACAGTAAGGTTCCTTACCAAGCGATTCATTGGGGAATATGCTTCTAATTTTGAATC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000170650.3