Pregenerated sensors for RERG (Mus musculus)
Ensembl gene IDs: ENSMUSG00000030222Ensembl transcript IDs: ENSMUST00000032347.11, ENSMUST00000117919.8, ENSMUST00000119610.4, ENSMUST00000149100.3, ENSMUST00000203003.2
Found 90 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GCACGGATCCTACGGCAAGCAGGGAAGGGAGAGACTGTCACAGCATaGGGCTGCAGAAGATACTCAGAGAATTTCCCAGCATATAGTGGA | + |
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Preference number: 1 (lower is better) Translates to: ARILRQAGKGETVTA*GCRRYSENFPAYSG Trigger: TCCACTATATGCTGGGAAATTCTCTGAGTATCTTCTGCAGCCCCATGCTGTGACAGTCTCTCCCTTCCCTGCTTGCCGTAGGATCCGTGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032347.11 ENSMUST00000117919.8 |
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| 3UTR GCA 90 bp | ATCCTACGGCAAGCAGGGAAGGGAGAGACTGTCACAGCATGGGGCTaGAGAAGATACTCAGAGAATTTCCCAGCATATAGTGGAGAGGGA | + |
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Preference number: 1 (lower is better) Translates to: ILRQAGKGETVTAWG*RRYSENFPAYSGEG Trigger: TCCCTCTCCACTATATGCTGGGAAATTCTCTGAGTATCTTCTGCAGCCCCATGCTGTGACAGTCTCTCCCTTCCCTGCTTGCCGTAGGAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000032347.11 ENSMUST00000117919.8 |
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| 3UTR GCA 90 bp | CACTACGGTGCTAATAGAGTAATATACAAACCAGGTGTCTCTAATTaGAATCCTCTACTAACATGCAGTGAGGTCAGGAGTGGGCACAAA | + |
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Preference number: 1 (lower is better) Translates to: HYGANRVIYKPGVSN*NPLLTCSEVRSGHK Trigger: TTTGTGCCCACTCCTGACCTCACTGCATGTTAGTAGAGGATTGCAATTAGAGACACCTGGTTTGTATATTACTCTATTAGCACCGTAGTG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032347.11 ENSMUST00000117919.8 |
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| 3UTR GCA 90 bp | CTGAATCAGCGGCTGGCTCTTTCTGAATGCATAGGATTCTGCCTTTaGTTCCAAAGAGAAATAACTAAGCGCCATAATTTTCTCAAGAGG | + |
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Preference number: 1 (lower is better) Translates to: LNQRLALSECIGFCL*FQREITKRHNFLKR Trigger: CCTCTTGAGAAAATTATGGCGCTTAGTTATTTCTCTTTGGAAGCAAAGGCAGAATCCTATGCATTCAGAAAGAGCCAGCCGCTGATTCAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000032347.11 ENSMUST00000117919.8 |
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| 3UTR CCA 90 bp | TCTCAGGATATGGGGCAGGAAATGAAGAGAAGGATCATAAACTCTTaGCAGTTACATAATCCTTTTGCCAGCCAAGCATCTACTTTGTGC | + |
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Preference number: 1 (lower is better) Translates to: SQDMGQEMKRRIINS*QLHNPFASQASTLC Trigger: GCACAAAGTAGATGCTTGGCTGGCAAAAGGATTATGTAACTGCCAAGAGTTTATGATCCTTCTCTTCATTTCCTGCCCCATATCCTGAGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000032347.11 ENSMUST00000117919.8 |
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| 3UTR GCA 90 bp | AAAATGCCTTTGAAAAGACTTCAACTTGTTAAATCAAGGCAGAGATaGCTACAATTAGCCTCCACGAACCCAGCCACTTCAGCATCTTTG | + |
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Preference number: 1 (lower is better) Translates to: KMPLKRLQLVKSRQR*LQLASTNPATSASL Trigger: CAAAGATGCTGAAGTGGCTGGGTTCGTGGAGGCTAATTGTAGGCATCTCTGCCTTGATTTAACAAGTTGAAGTCTTTTCAAAGGCATTTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000032347.11 ENSMUST00000117919.8 |
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| 3UTR TCA 90 bp | TTTGCCAGCCAAGCATCTACTTTGTGCACGCTCGTTCACGTAGAGTaGATTTTACTCACCCATTATTTTTCTGAATTCTCCCATGTGAAT | + |
|
Preference number: 1 (lower is better) Translates to: FASQASTLCTLVHVE*ILLTHYFSEFSHVN Trigger: ATTCACATGGGAGAATTCAGAAAAATAATGGGTGAGTAAAATTCACTCTACGTGAACGAGCGTGCACAAAGTAGATGCTTGGCTGGCAAA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000032347.11 ENSMUST00000117919.8 |
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| 3UTR-3UTR CCA 90 bp | GCACGGATCCTACGGCAAGCAGGGAAGGGAGAGACTGTCACAGCATGGGGCTGCAGGACATCTTGGCTGTaGCTAGAGGGGCAGCAGGAG | + |
|
Preference number: 2 (lower is better) Translates to: ARILRQAGKGETVTAWGCRTSWL*LEGQQE Trigger: CTCCTGCTGCCCCTCTAGCCACAGCCAAGATGTCCT...GCAGCCCCATGCTGTGACAGTCTCTCCCTTCCCTGCTTGCCGTAGGATCCGTGC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000032347.11 ENSMUST00000117919.8 |
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| 3UTR-3UTR GCA 90 bp | AGCATCTTTGGTGGTTGCATCTTCAAACTACATTTGCACGGATCCTACGGCAAGGTCACAGCATGGGGCTaGAGAAGATACTCAGAGAAT | + |
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Preference number: 2 (lower is better) Translates to: SIFGGCIFKLHLHGSYGKVTAWG*RRYSEN Trigger: ATTCTCTGAGTATCTTCTGCAGCCCCATGCTGTGAC...CTTGCCGTAGGATCCGTGCAAATGTAGTTTGAAGATGCAACCACCAAAGATGCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000032347.11 ENSMUST00000117919.8 |
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| 3UTR-3UTR GCA 90 bp | GGCCAAATCTCAGGATATGGGGCAGGAAATGAAGAGAAGGATCATAAACTCTTGCTGGCTCTTTCTGAATaGATAGGATTCTGCCTTTGC | + |
|
Preference number: 2 (lower is better) Translates to: GQISGYGAGNEEKDHKLLLALSE*IGFCLC Trigger: GCAAAGGCAGAATCCTATGCATTCAGAAAGAGCCAG...CAAGAGTTTATGATCCTTCTCTTCATTTCCTGCCCCATATCCTGAGATTTGGCC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000032347.11 ENSMUST00000117919.8 |
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| 3UTR-3UTR GCA 90 bp | CTTTCTGAATGCATAGGATTCTGCCTTTGCTTCCAAAGAGAAATAACTAAGCGCGTCACAGCATGGGGCTaGAGAAGATACTCAGAGAAT | + |
|
Preference number: 2 (lower is better) Translates to: LSECIGFCLCFQREITKRVTAWG*RRYSEN Trigger: ATTCTCTGAGTATCTTCTGCAGCCCCATGCTGTGAC...GCGCTTAGTTATTTCTCTTTGGAAGCAAAGGCAGAATCCTATGCATTCAGAAAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000032347.11 ENSMUST00000117919.8 |
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| 3UTR-3UTR GCA 90 bp | ATCTCAGGATATGGGGCAGGAAATGAAGAGAAGGATCATAAACTCTTGGCAGTTCAGCACGGTGTGAATTaGGGGTCTTGTTTCTTTTGT | + |
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Preference number: 2 (lower is better) Translates to: ISGYGAGNEEKDHKLLAVQHGVN*GSCFFC Trigger: ACAAAAGAAACAAGACCCGCAATTCACACCGTGCTG...AACTGCCAAGAGTTTATGATCCTTCTCTTCATTTCCTGCCCCATATCCTGAGAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000032347.11 ENSMUST00000117919.8 |
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| 3UTR-3UTR TCA 90 bp | AACAACCGATACTTCTTACTCCTTTTGGAGTTGCATATAGTTTTTCCAAATAGCGTGAGCCAAGCATGGTaGCACACGCCTTTAATCCCA | + |
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Preference number: 2 (lower is better) Translates to: NNRYFLLLLELHIVFPNSVSQAW*HTPLIP Trigger: TGGGATTAAAGGCGTGTGTCACCATGCTTGGCTCAC...GCTATTTGGAAAAACTATATGCAACTCCAAAAGGAGTAAGAAGTATCGGTTGTT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000149100.3 |
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| 3UTR-3UTR GCA 90 bp | GGCCAAATCTCAGGATATGGGGCAGGAAATGAAGAGAAGGATCATAAACTCTTGAGCATCTTTGGTGGTTaGATCTTCAAACTACATTTG | + |
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Preference number: 2 (lower is better) Translates to: GQISGYGAGNEEKDHKLLSIFGG*IFKLHL Trigger: CAAATGTAGTTTGAAGATGCAACCACCAAAGATGCT...CAAGAGTTTATGATCCTTCTCTTCATTTCCTGCCCCATATCCTGAGATTTGGCC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000032347.11 ENSMUST00000117919.8 |
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| 3UTR-3UTR CCA 90 bp | CTTTCTGAATGCATAGGATTCTGCCTTTGCTTCCAAAGAGAAATAACTAAGCGCCCACTTCAGCATCTTTaGTGGTTGCATCTTCAAACT | + |
|
Preference number: 2 (lower is better) Translates to: LSECIGFCLCFQREITKRPLQHL*WLHLQT Trigger: AGTTTGAAGATGCAACCACCAAAGATGCTGAAGTGG...GCGCTTAGTTATTTCTCTTTGGAAGCAAAGGCAGAATCCTATGCATTCAGAAAG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032347.11 ENSMUST00000117919.8 |
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| 3UTR-3UTR CCA 90 bp | AAACCAGGTGTCTCTAATTGCAATCCTCTACTAACATGCAGTGAGGTCAGGAGTAATCCTCACTTCAAATaGGAACTAGAATTCTGTTCC | + |
|
Preference number: 2 (lower is better) Translates to: KPGVSNCNPLLTCSEVRSNPHFK*ELEFCS Trigger: GGAACAGAATTCTAGTTCCCATTTGAAGTGAGGATT...ACTCCTGACCTCACTGCATGTTAGTAGAGGATTGCAATTAGAGACACCTGGTTT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032347.11 ENSMUST00000117919.8 |
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| 3UTR CAA 90 bp | GTGACCTTTGTAGTCTTCCACAAGATTCAGAATCTTAAAATGCCTTaGAAAAGACTTCAACTTGTTAAATCAAGGCAGAGATGCCTACAA | + |
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Preference number: 2 (lower is better) Translates to: VTFVVFHKIQNLKMP*KRLQLVKSRQRCLQ Trigger: TTGTAGGCATCTCTGCCTTGATTTAACAAGTTGAAGTCTTTTCAAAGGCATTTTAAGATTCTGAATCTTGTGGAAGACTACAAAGGTCAC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000032347.11 ENSMUST00000117919.8 |
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| 3UTR CCA 72 bp | ACATCCCCCAAACTCAGAATAAGGAGAAGGACATCTTaGCTGTGGCTAGAGGGGCAGCAGGAGAGCCAGGAA | + |
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Preference number: 3 (lower is better) Translates to: TSPKLRIRRRTS*LWLEGQQESQE Trigger: TTCCTGGCTCTCCTGCTGCCCCTCTAGCCACAGCCAAGATGTCCTTCTCCTTATTCTGAGTTTGGGGGATGT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000032347.11 ENSMUST00000117919.8 |
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| 3UTR CCA 72 bp | CTACGGCAAGCAGGGAAGGGAGAGACTGTCACAGCATaGGGCTGCAGAAGATACTCAGAGAATTTCCCAGCA | + |
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Preference number: 3 (lower is better) Translates to: LRQAGKGETVTA*GCRRYSENFPA Trigger: TGCTGGGAAATTCTCTGAGTATCTTCTGCAGCCCCATGCTGTGACAGTCTCTCCCTTCCCTGCTTGCCGTAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032347.11 ENSMUST00000117919.8 |
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| 3UTR-3UTR CAA 90 bp | TGGGGCTGCAGAAGATACTCAGAGAATTTCCCAGCATATAGTGGAGAGGGACCCAAGGAGAAGGACATCTaGGCTGTGGCTAGAGGGGCA | + |
|
Preference number: 3 (lower is better) Translates to: WGCRRYSENFPAYSGEGPKEKDI*AVARGA Trigger: TGCCCCTCTAGCCACAGCCAAGATGTCCTTCTCCTT...GGGTCCCTCTCCACTATATGCTGGGAAATTCTCTGAGTATCTTCTGCAGCCCCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000032347.11 ENSMUST00000117919.8 |
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| 3UTR-3UTR CAA 90 bp | CTTCAGCATCTTTGGTGGTTGCATCTTCAAACTACATTTGCACGGATCCTACGGAAGGAGAAGGACATCTaGGCTGTGGCTAGAGGGGCA | + |
|
Preference number: 3 (lower is better) Translates to: LQHLWWLHLQTTFARILRKEKDI*AVARGA Trigger: TGCCCCTCTAGCCACAGCCAAGATGTCCTTCTCCTT...CCGTAGGATCCGTGCAAATGTAGTTTGAAGATGCAACCACCAAAGATGCTGAAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000032347.11 ENSMUST00000117919.8 |
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| 3UTR GCA 72 bp | TCAGCATCTTTGGTGGTTGCATCTTCAAACTACATTTaGACGGATCCTACGGCAAGCAGGGAAGGGAGAGAC | + |
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Preference number: 3 (lower is better) Translates to: SASLVVASSNYI*TDPTASREGRD Trigger: GTCTCTCCCTTCCCTGCTTGCCGTAGGATCCGTGCAAATGTAGTTTGAAGATGCAACCACCAAAGATGCTGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032347.11 ENSMUST00000117919.8 |
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| 3UTR CCA 72 bp | ATTCCTAGTGGGTTTGTTTTTCTTATCACCAAGGCTTaGGGAAGCAAAGCCACAGCACGGTGTGAATTGCGG | + |
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Preference number: 3 (lower is better) Translates to: IPSGFVFLITKA*GSKATARCELR Trigger: CCGCAATTCACACCGTGCTGTGGCTTTGCTTCCCCAAGCCTTGGTGATAAGAAAAACAAACCCACTAGGAAT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000032347.11 ENSMUST00000117919.8 |
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| 3UTR TCA 72 bp | CACCAAGGCTTGGGGAAGCAAAGCCACAGCACGGTGTaGATTGCGGGTCTTGTTTCTTTTGTTATTAAGGAA | + |
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Preference number: 3 (lower is better) Translates to: HQGLGKQSHSTV*IAGLVSFVIKE Trigger: TTCCTTAATAACAAAAGAAACAAGACCCGCAATTCACACCGTGCTGTGGCTTTGCTTCCCCAAGCCTTGGTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000032347.11 ENSMUST00000117919.8 |
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| 3UTR GCA 72 bp | AATCAGCGGCTGGCTCTTTCTGAATGCATAGGATTCTaGCTTTGCTTCCAAAGAGAAATAACTAAGCGCCAT | + |
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Preference number: 3 (lower is better) Translates to: NQRLALSECIGF*LCFQREITKRH Trigger: ATGGCGCTTAGTTATTTCTCTTTGGAAGCAAAGGCAGAATCCTATGCATTCAGAAAGAGCCAGCCGCTGATT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032347.11 ENSMUST00000117919.8 |
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| 3UTR GCA 72 bp | TTGAAAAGACTTCAACTTGTTAAATCAAGGCAGAGATaGCTACAATTAGCCTCCACGAACCCAGCCACTTCA | + |
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Preference number: 3 (lower is better) Translates to: LKRLQLVKSRQR*LQLASTNPATS Trigger: TGAAGTGGCTGGGTTCGTGGAGGCTAATTGTAGGCATCTCTGCCTTGATTTAACAAGTTGAAGTCTTTTCAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000032347.11 ENSMUST00000117919.8 |
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| 3UTR-3UTR CAA 90 bp | GGCCAAATCTCAGGATATGGGGCAGGAAATGAAGAGAAGGATCATAAACTCTTGCATAGGATTCTGCCTTaGCTTCCAAAGAGAAATAAC | + |
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Preference number: 3 (lower is better) Translates to: GQISGYGAGNEEKDHKLLHRILP*LPKRNN Trigger: GTTATTTCTCTTTGGAAGCAAAGGCAGAATCCTATG...CAAGAGTTTATGATCCTTCTCTTCATTTCCTGCCCCATATCCTGAGATTTGGCC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000032347.11 ENSMUST00000117919.8 |
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| 3UTR-3UTR CAA 90 bp | GGCCAAATCTCAGGATATGGGGCAGGAAATGAAGAGAAGGATCATAAACTCTTGTGTGAATTGCGGGTCTaGTTTCTTTTGTTATTAAGG | + |
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Preference number: 3 (lower is better) Translates to: GQISGYGAGNEEKDHKLLCELRV*FLLLLR Trigger: CCTTAATAACAAAAGAAACAAGACCCGCAATTCACA...CAAGAGTTTATGATCCTTCTCTTCATTTCCTGCCCCATATCCTGAGATTTGGCC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000032347.11 ENSMUST00000117919.8 |
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| 3UTR TCA 72 bp | CAAGCATCTACTTTGTGCACGCTCGTTCACGTAGAGTaGATTTTACTCACCCATTATTTTTCTGAATTCTCC | + |
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Preference number: 3 (lower is better) Translates to: QASTLCTLVHVE*ILLTHYFSEFS Trigger: GGAGAATTCAGAAAAATAATGGGTGAGTAAAATTCACTCTACGTGAACGAGCGTGCACAAAGTAGATGCTTG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000032347.11 ENSMUST00000117919.8 |
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| CDS-3UTR GCA 90 bp | GATCCTACGGCAAGCAGGGAAGGGAGAGACTGTCACAGCATGGGGCTGCAGAAGTCTCCCCAGCGCATGTaGCCTTCCCTCTGGATGGTG | + |
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Preference number: 4 (lower is better) Translates to: DPTASREGRDCHSMGLQKSPQRM*PSLWMV Trigger: CACCATCCAGAGGGAAGGGCACATGCGCTGGGGAGA...CTTCTGCAGCCCCATGCTGTGACAGTCTCTCCCTTCCCTGCTTGCCGTAGGATC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000032347.11 ENSMUST00000117919.8 |
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| CDS-3UTR GCA 90 bp | CTTCAGCATCTTTGGTGGTTGCATCTTCAAACTACATTTGCACGGATCCTACGGCGTGTGTGGTGGAGCTaGGGCGCCTTGTCTTGCCCT | + |
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Preference number: 4 (lower is better) Translates to: LQHLWWLHLQTTFARILRRVWWS*GALSCP Trigger: AGGGCAAGACAAGGCGCCGCAGCTCCACCACACACG...CCGTAGGATCCGTGCAAATGTAGTTTGAAGATGCAACCACCAAAGATGCTGAAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032347.11 ENSMUST00000117919.8 |
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| CDS-3UTR CCA 90 bp | GGTTGCATCTTCAAACTACATTTGCACGGATCCTACGGCAAGCAGGGAAGGGAGCTGTGCTCACTTGTCTaGAGTGGTCCAAGTCGGCTT | + |
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Preference number: 4 (lower is better) Translates to: GCIFKLHLHGSYGKQGRELCSLV*SGPSRL Trigger: AAGCCGACTTGGACCACTCCAGACAAGTGAGCACAG...CTCCCTTCCCTGCTTGCCGTAGGATCCGTGCAAATGTAGTTTGAAGATGCAACC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032347.11 ENSMUST00000117919.8 |
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| CDS-3UTR TCA 90 bp | AGAAACCCTGACATCCCCCAAACTCAGAATAAGGAGAAGGACATCTTGGCTGTGCATAGAACACCTCCGTaGTGTTCCCTTCTCCCGTGC | + |
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Preference number: 4 (lower is better) Translates to: RNPDIPQTQNKEKDILAVHRTPP*CSLLPC Trigger: GCACGGGAGAAGGGAACATCACGGAGGTGTTCTATG...CACAGCCAAGATGTCCTTCTCCTTATTCTGAGTTTGGGGGATGTCAGGGTTTCT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000032347.11 ENSMUST00000117919.8 |
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| CDS-3UTR GCA 90 bp | GGTTGCATCTTCAAACTACATTTGCACGGATCCTACGGCAAGCAGGGAAGGGAGTGTTCCCTTCTCCCGTaGAGGCGGAACATTCGTAAA | + |
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Preference number: 4 (lower is better) Translates to: GCIFKLHLHGSYGKQGRECSLLP*RRNIRK Trigger: TTTACGAATGTTCCGCCTGCACGGGAGAAGGGAACA...CTCCCTTCCCTGCTTGCCGTAGGATCCGTGCAAATGTAGTTTGAAGATGCAACC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032347.11 ENSMUST00000117919.8 |
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| CDS-3UTR GCA 90 bp | CCAGCATATAGTGGAGAGGGACCCACGAGAAACCCTGACATCCCCCAAACTCAGATCTTGTTAATCGCTTaGTTGACGTGTGTGGTGGAG | + |
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Preference number: 4 (lower is better) Translates to: PAYSGEGPTRNPDIPQTQILLIA*LTCVVE Trigger: CTCCACCACACACGTCAAGCAAGCGATTAACAAGAT...CTGAGTTTGGGGGATGTCAGGGTTTCTCGTGGGTCCCTCTCCACTATATGCTGG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000032347.11 ENSMUST00000117919.8 |
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| CDS-3UTR CCA 90 bp | TTGCATCTTCAAACTACATTTGCACGGATCCTACGGCAAGCAGGGAAGGGAGAGCTGTGCTCACTTGTCTaGAGTGGTCCAAGTCGGCTT | + |
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Preference number: 4 (lower is better) Translates to: LHLQTTFARILRQAGKGELCSLV*SGPSRL Trigger: AAGCCGACTTGGACCACTCCAGACAAGTGAGCACAG...CTCTCCCTTCCCTGCTTGCCGTAGGATCCGTGCAAATGTAGTTTGAAGATGCAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032347.11 ENSMUST00000117919.8 |
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| 3UTR CAA 72 bp | CCTCCACGAACCCAGCCACTTCAGCATCTTTGGTGGTaGCATCTTCAAACTACATTTGCACGGATCCTACGG | + |
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Preference number: 4 (lower is better) Translates to: PPRTQPLQHLWW*HLQTTFARILR Trigger: CCGTAGGATCCGTGCAAATGTAGTTTGAAGATGCAACCACCAAAGATGCTGAAGTGGCTGGGTTCGTGGAGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032347.11 ENSMUST00000117919.8 |
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| CDS-3UTR TCA 90 bp | CTTCAGCATCTTTGGTGGTTGCATCTTCAAACTACATTTGCACGGATCCTACGGCATAGAACACCTCCGTaGTGTTCCCTTCTCCCGTGC | + |
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Preference number: 4 (lower is better) Translates to: LQHLWWLHLQTTFARILRHRTPP*CSLLPC Trigger: GCACGGGAGAAGGGAACATCACGGAGGTGTTCTATG...CCGTAGGATCCGTGCAAATGTAGTTTGAAGATGCAACCACCAAAGATGCTGAAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032347.11 ENSMUST00000117919.8 |
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| CDS-3UTR TCA 90 bp | TTGCATCTTCAAACTACATTTGCACGGATCCTACGGCAAGCAGGGAAGGGAGAGGATCGTACTCCCAGATaGACCGTTTGGTCAGAAATC | + |
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Preference number: 4 (lower is better) Translates to: LHLQTTFARILRQAGKGEDRTPR*TVWSEI Trigger: GATTTCTGACCAAACGGTTCATCTGGGAGTACGATC...CTCTCCCTTCCCTGCTTGCCGTAGGATCCGTGCAAATGTAGTTTGAAGATGCAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032347.11 ENSMUST00000117919.8 |
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| CDS-3UTR GCA 90 bp | AAAAGACTTCAACTTGTTAAATCAAGGCAGAGATGCCTACAATTAGCCTCCACGTCTCCCCAGCGCATGTaGCCTTCCCTCTGGATGGTG | + |
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Preference number: 4 (lower is better) Translates to: KRLQLVKSRQRCLQLASTSPQRM*PSLWMV Trigger: CACCATCCAGAGGGAAGGGCACATGCGCTGGGGAGA...CGTGGAGGCTAATTGTAGGCATCTCTGCCTTGATTTAACAAGTTGAAGTCTTTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000032347.11 ENSMUST00000117919.8 |
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| CDS-3UTR CCA 90 bp | ATCTCAGGATATGGGGCAGGAAATGAAGAGAAGGATCATAAACTCTTGGCAGTTTGGATGGTGTCTTCCTaGCCAGCGGTGTCCAGGATC | + |
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Preference number: 4 (lower is better) Translates to: ISGYGAGNEEKDHKLLAVWMVSS*PAVSRI Trigger: GATCCTGGACACCGCTGGCCAGGAAGACACCATCCA...AACTGCCAAGAGTTTATGATCCTTCTCTTCATTTCCTGCCCCATATCCTGAGAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000032347.11 ENSMUST00000117919.8 |
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| CDS-3UTR CCA 90 bp | AGCATCTTTGGTGGTTGCATCTTCAAACTACATTTGCACGGATCCTACGGCAAGCAACTTCATCGTCTATaGTTGCCTGGTGTCGGTAGG | + |
|
Preference number: 4 (lower is better) Translates to: SIFGGCIFKLHLHGSYGKQLHRL*LPGVGR Trigger: CCTACCGACACCAGGCAACCATAGACGATGAAGTTG...CTTGCCGTAGGATCCGTGCAAATGTAGTTTGAAGATGCAACCACCAAAGATGCT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032347.11 ENSMUST00000117919.8 |
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| 3UTR CAA 72 bp | CAATTAGCCTCCACGAACCCAGCCACTTCAGCATCTTaGGTGGTTGCATCTTCAAACTACATTTGCACGGAT | + |
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Preference number: 4 (lower is better) Translates to: QLASTNPATSAS*VVASSNYICTD Trigger: ATCCGTGCAAATGTAGTTTGAAGATGCAACCACCAAAGATGCTGAAGTGGCTGGGTTCGTGGAGGCTAATTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032347.11 ENSMUST00000117919.8 |
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| CDS-3UTR GCA 90 bp | AAAAGACTTCAACTTGTTAAATCAAGGCAGAGATGCCTACAATTAGCCTCCACGTCTCCCCTTCTTCTGTaGTCACTTGTCTGGAGTGGT | + |
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Preference number: 4 (lower is better) Translates to: KRLQLVKSRQRCLQLASTSPLLL*SLVWSG Trigger: ACCACTCCAGACAAGTGAGCACAGAAGAAGGGGAGA...CGTGGAGGCTAATTGTAGGCATCTCTGCCTTGATTTAACAAGTTGAAGTCTTTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000032347.11 ENSMUST00000117919.8 |
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| CDS-3UTR GCA 90 bp | CTTTCTGAATGCATAGGATTCTGCCTTTGCTTCCAAAGAGAAATAACTAAGCGCTCTCCCCTTCTTCTGTaGTCACTTGTCTGGAGTGGT | + |
|
Preference number: 4 (lower is better) Translates to: LSECIGFCLCFQREITKRSPLLL*SLVWSG Trigger: ACCACTCCAGACAAGTGAGCACAGAAGAAGGGGAGA...GCGCTTAGTTATTTCTCTTTGGAAGCAAAGGCAGAATCCTATGCATTCAGAAAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000032347.11 ENSMUST00000117919.8 |
||
| CDS-3UTR CCA 90 bp | AAAAGACTTCAACTTGTTAAATCAAGGCAGAGATGCCTACAATTAGCCTCCACGCAACTTCATCGTCTATaGTTGCCTGGTGTCGGTAGG | + |
|
Preference number: 4 (lower is better) Translates to: KRLQLVKSRQRCLQLASTQLHRL*LPGVGR Trigger: CCTACCGACACCAGGCAACCATAGACGATGAAGTTG...CGTGGAGGCTAATTGTAGGCATCTCTGCCTTGATTTAACAAGTTGAAGTCTTTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000032347.11 ENSMUST00000117919.8 |
||
| CDS-3UTR CCA 90 bp | AACAACCGATACTTCTTACTCCTTTTGGAGTTGCATATAGTTTTTCCAAATAGCGAATCAGGTGGATCCTaGAGTTCAAGGCCAGCCTGG | + |
|
Preference number: 4 (lower is better) Translates to: NNRYFLLLLELHIVFPNSESGGS*SSRPAW Trigger: CCAGGCTGGCCTTGAACTCCAGGATCCACCTGATTC...GCTATTTGGAAAAACTATATGCAACTCCAAAAGGAGTAAGAAGTATCGGTTGTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000149100.3 |
||
| CDS-3UTR GCA 90 bp | AAAAGACTTCAACTTGTTAAATCAAGGCAGAGATGCCTACAATTAGCCTCCACGATCTTGTTAATCGCTTaGTTGACGTGTGTGGTGGAG | + |
|
Preference number: 4 (lower is better) Translates to: KRLQLVKSRQRCLQLASTILLIA*LTCVVE Trigger: CTCCACCACACACGTCAAGCAAGCGATTAACAAGAT...CGTGGAGGCTAATTGTAGGCATCTCTGCCTTGATTTAACAAGTTGAAGTCTTTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000032347.11 ENSMUST00000117919.8 |
||
| CDS-3UTR CAA 90 bp | CCAGCATATAGTGGAGAGGGACCCACGAGAAACCCTGACATCCCCCAAACTCAGCTGCGGCGCCTTGTCTaGCCCTGCACCATCCTTCTG | + |
|
Preference number: 5 (lower is better) Translates to: PAYSGEGPTRNPDIPQTQLRRLV*PCTILL Trigger: CAGAAGGATGGTGCAGGGCAAGACAAGGCGCCGCAG...CTGAGTTTGGGGGATGTCAGGGTTTCTCGTGGGTCCCTCTCCACTATATGCTGG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000032347.11 ENSMUST00000117919.8 |
||
| CDS-3UTR CAA 90 bp | TTGCATCTTCAAACTACATTTGCACGGATCCTACGGCAAGCAGGGAAGGGAGAGTGGAGCTGCGGCGCCTaGTCTTGCCCTGCACCATCC | + |
|
Preference number: 5 (lower is better) Translates to: LHLQTTFARILRQAGKGEWSCGA*SCPAPS Trigger: GGATGGTGCAGGGCAAGACAAGGCGCCGCAGCTCCA...CTCTCCCTTCCCTGCTTGCCGTAGGATCCGTGCAAATGTAGTTTGAAGATGCAA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032347.11 ENSMUST00000117919.8 |
||
| CDS-3UTR CAA 90 bp | GCACGGATCCTACGGCAAGCAGGGAAGGGAGAGACTGTCACAGCATGGGGCTGCCATCTTGTTAATCGCTaGCTTGACGTGTGTGGTGGA | + |
|
Preference number: 5 (lower is better) Translates to: ARILRQAGKGETVTAWGCHLVNR*LDVCGG Trigger: TCCACCACACACGTCAAGCAAGCGATTAACAAGATG...GCAGCCCCATGCTGTGACAGTCTCTCCCTTCCCTGCTTGCCGTAGGATCCGTGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000032347.11 ENSMUST00000117919.8 |
||
| CDS TCA 90 bp | AGATGTTCTTCAGCGGCAGCACTTCTTCGAAGCTCCCTCGATCGGTaGTGTCGTAAACCAACACGAAGCCTTCTCCCCAGCGCATGTGCC | + |
|
Preference number: 5 (lower is better) Translates to: RCSSAAALLRSSLDR*CRKPTRSLLPSACA Trigger: GGCACATGCGCTGGGGAGAAGGCTTCGTGTTGGTTTACGACATCACCGATCGAGGGAGCTTCGAAGAAGTGCTGCCGCTGAAGAACATCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000032347.11 ENSMUST00000117919.8 ENSMUST00000119610.4 ENSMUST00000203003.2 |
||
| CDS TCA 90 bp | TCCTTCTGCGACGCACCTCTCGACAGAGCTCATAGAACACCTCCGTaGTGTTCCCTTCTCCCGTGCAGGCGGAACATTCGTAAAACGCAC | + |
|
Preference number: 5 (lower is better) Translates to: SFCDAPLDRAHRTPP*CSLLPCRRNIRKTH Trigger: GTGCGTTTTACGAATGTTCCGCCTGCACGGGAGAAGGGAACATCACGGAGGTGTTCTATGAGCTCTGTCGAGAGGTGCGTCGCAGAAGGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000032347.11 ENSMUST00000117919.8 ENSMUST00000119610.4 |
||
| CDS GCA 90 bp | AAAACGCACACGCCAGTTCCGTCGCCAGCTTCTCCCCTTCTTCTGTaGTCACTTGTCTGGAGTGGTCCAAGTCGGCTTTGTTTCCGACCA | + |
|
Preference number: 5 (lower is better) Translates to: KTHTPVPSPASPLLL*SLVWSGPSRLCFRP Trigger: TGGTCGGAAACAAAGCCGACTTGGACCACTCCAGACAAGTGAGCACAGAAGAAGGGGAGAAGCTGGCGACGGAACTGGCGTGTGCGTTTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000032347.11 ENSMUST00000117919.8 ENSMUST00000119610.4 |
||
| CDS-3UTR CAA 90 bp | GATCCTACGGCAAGCAGGGAAGGGAGAGACTGTCACAGCATGGGGCTGCAGAAGTTCTTCTGTGCTCACTaGTCTGGAGTGGTCCAAGTC | + |
|
Preference number: 5 (lower is better) Translates to: DPTASREGRDCHSMGLQKFFCAH*SGVVQV Trigger: GACTTGGACCACTCCAGACAAGTGAGCACAGAAGAA...CTTCTGCAGCCCCATGCTGTGACAGTCTCTCCCTTCCCTGCTTGCCGTAGGATC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000032347.11 ENSMUST00000117919.8 |
||
| CDS-3UTR CAA 90 bp | GAACCCAGCCACTTCAGCATCTTTGGTGGTTGCATCTTCAAACTACATTTGCACTGGAGCTGCGGCGCCTaGTCTTGCCCTGCACCATCC | + |
|
Preference number: 5 (lower is better) Translates to: EPSHFSIFGGCIFKLHLHWSCGA*SCPAPS Trigger: GGATGGTGCAGGGCAAGACAAGGCGCCGCAGCTCCA...GTGCAAATGTAGTTTGAAGATGCAACCACCAAAGATGCTGAAGTGGCTGGGTTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032347.11 ENSMUST00000117919.8 |
||
| CDS CCA 90 bp | TCCGTCGCCAGCTTCTCCCCTTCTTCTGTGCTCACTTGTCTGGAGTaGTCCAAGTCGGCTTTGTTTCCGACCAAGATGAGAGTCACGTTT | + |
|
Preference number: 5 (lower is better) Translates to: SVASFSPSSVLTCLE*SKSALFPTKMRVTF Trigger: AAACGTGACTCTCATCTTGGTCGGAAACAAAGCCGACTTGGACCACTCCAGACAAGTGAGCACAGAAGAAGGGGAGAAGCTGGCGACGGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000032347.11 ENSMUST00000117919.8 ENSMUST00000119610.4 |
||
| CDS-3UTR CAA 90 bp | AAACCAGGTGTCTCTAATTGCAATCCTCTACTAACATGCAGTGAGGTCAGGAGTCTGCGGCGCCTTGTCTaGCCCTGCACCATCCTTCTG | + |
|
Preference number: 5 (lower is better) Translates to: KPGVSNCNPLLTCSEVRSLRRLV*PCTILL Trigger: CAGAAGGATGGTGCAGGGCAAGACAAGGCGCCGCAG...ACTCCTGACCTCACTGCATGTTAGTAGAGGATTGCAATTAGAGACACCTGGTTT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032347.11 ENSMUST00000117919.8 |
||
| CDS TCA 90 bp | CCTGGTGTCGGTAGGTTGATTCGAGGGTTGGATCGTACTCCCAGATaGACCGTTTGGTCAGAAATCTCACTACAATCGCTGACTTGCCCA | + |
|
Preference number: 5 (lower is better) Translates to: PGVGRLIRGLDRTPR*TVWSEISLQSLTCP Trigger: TGGGCAAGTCAGCGATTGTAGTGAGATTTCTGACCAAACGGTTCATCTGGGAGTACGATCCAACCCTCGAATCAACCTACCGACACCAGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032347.11 ENSMUST00000117919.8 |
||
| CDS-3UTR CAA 90 bp | GGTTGCATCTTCAAACTACATTTGCACGGATCCTACGGCAAGCAGGGAAGGGAGTTGTTAATCGCTTGCTaGACGTGTGTGGTGGAGCTG | + |
|
Preference number: 5 (lower is better) Translates to: GCIFKLHLHGSYGKQGRELLIAC*TCVVEL Trigger: CAGCTCCACCACACACGTCAAGCAAGCGATTAACAA...CTCCCTTCCCTGCTTGCCGTAGGATCCGTGCAAATGTAGTTTGAAGATGCAACC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032347.11 ENSMUST00000117919.8 |
||
| CDS-3UTR CAA 90 bp | TGGGGAAGCAAAGCCACAGCACGGTGTGAATTGCGGGTCTTGTTTCTTTTGTTACTTCATCGTCTATGGTaGCCTGGTGTCGGTAGGTTG | + |
|
Preference number: 5 (lower is better) Translates to: WGSKATARCELRVLFLLLLHRLW*PGVGRL Trigger: CAACCTACCGACACCAGGCAACCATAGACGATGAAG...TAACAAAAGAAACAAGACCCGCAATTCACACCGTGCTGTGGCTTTGCTTCCCCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000032347.11 ENSMUST00000117919.8 |
||
| CDS-3UTR CAA 90 bp | GGTTGCATCTTCAAACTACATTTGCACGGATCCTACGGCAAGCAGGGAAGGGAGCATCTTGTTAATCGCTaGCTTGACGTGTGTGGTGGA | + |
|
Preference number: 5 (lower is better) Translates to: GCIFKLHLHGSYGKQGREHLVNR*LDVCGG Trigger: TCCACCACACACGTCAAGCAAGCGATTAACAAGATG...CTCCCTTCCCTGCTTGCCGTAGGATCCGTGCAAATGTAGTTTGAAGATGCAACC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032347.11 ENSMUST00000117919.8 |
||
| CDS-3UTR CAA 90 bp | GAACCCAGCCACTTCAGCATCTTTGGTGGTTGCATCTTCAAACTACATTTGCACCTTCATCGTCTATGGTaGCCTGGTGTCGGTAGGTTG | + |
|
Preference number: 5 (lower is better) Translates to: EPSHFSIFGGCIFKLHLHLHRLW*PGVGRL Trigger: CAACCTACCGACACCAGGCAACCATAGACGATGAAG...GTGCAAATGTAGTTTGAAGATGCAACCACCAAAGATGCTGAAGTGGCTGGGTTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032347.11 ENSMUST00000117919.8 |
||
| CDS-3UTR CAA 90 bp | AATCAGCGGCTGGCTCTTTCTGAATGCATAGGATTCTGCCTTTGCTTCCAAAGATGGTCCAAGTCGGCTTaGTTTCCGACCAAGATGAGA | + |
|
Preference number: 5 (lower is better) Translates to: NQRLALSECIGFCLCFQRWSKSA*FPTKMR Trigger: TCTCATCTTGGTCGGAAACAAAGCCGACTTGGACCA...TCTTTGGAAGCAAAGGCAGAATCCTATGCATTCAGAAAGAGCCAGCCGCTGATT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032347.11 ENSMUST00000117919.8 |
||
| CDS-3UTR CAA 90 bp | AATCAGCGGCTGGCTCTTTCTGAATGCATAGGATTCTGCCTTTGCTTCCAAAGATTCTTCTGTGCTCACTaGTCTGGAGTGGTCCAAGTC | + |
|
Preference number: 5 (lower is better) Translates to: NQRLALSECIGFCLCFQRFFCAH*SGVVQV Trigger: GACTTGGACCACTCCAGACAAGTGAGCACAGAAGAA...TCTTTGGAAGCAAAGGCAGAATCCTATGCATTCAGAAAGAGCCAGCCGCTGATT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032347.11 ENSMUST00000117919.8 |
||
| CDS-3UTR CAA 90 bp | AAACCAGGTGTCTCTAATTGCAATCCTCTACTAACATGCAGTGAGGTCAGGAGTTTGTTAATCGCTTGCTaGACGTGTGTGGTGGAGCTG | + |
|
Preference number: 5 (lower is better) Translates to: KPGVSNCNPLLTCSEVRSLLIAC*TCVVEL Trigger: CAGCTCCACCACACACGTCAAGCAAGCGATTAACAA...ACTCCTGACCTCACTGCATGTTAGTAGAGGATTGCAATTAGAGACACCTGGTTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032347.11 ENSMUST00000117919.8 |
||
| CDS-3UTR CAA 90 bp | GGCCAAATCTCAGGATATGGGGCAGGAAATGAAGAGAAGGATCATAAACTCTTGTCCCAGATGAACCGTTaGGTCAGAAATCTCACTACA | + |
|
Preference number: 5 (lower is better) Translates to: GQISGYGAGNEEKDHKLLSQMNR*VRNLTT Trigger: TGTAGTGAGATTTCTGACCAAACGGTTCATCTGGGA...CAAGAGTTTATGATCCTTCTCTTCATTTCCTGCCCCATATCCTGAGATTTGGCC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000032347.11 ENSMUST00000117919.8 |
||
| CDS-3UTR CAA 90 bp | AACAACCGATACTTCTTACTCCTTTTGGAGTTGCATATAGTTTTTCCAAATAGCGAGATACTGTCTGACTaGCCCACGCCCGCTCTTCCA | + |
|
Preference number: 5 (lower is better) Translates to: NNRYFLLLLELHIVFPNSEILSD*PTPALP Trigger: TGGAAGAGCGGGCGTGGGCAAGTCAGACAGTATCTC...GCTATTTGGAAAAACTATATGCAACTCCAAAAGGAGTAAGAAGTATCGGTTGTT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000149100.3 |
||
| CDS-3UTR CAA 90 bp | ATCTCAGGATATGGGGCAGGAAATGAAGAGAAGGATCATAAACTCTTGGCAGTTTCCCAGATGAACCGTTaGGTCAGAAATCTCACTACA | + |
|
Preference number: 5 (lower is better) Translates to: ISGYGAGNEEKDHKLLAVSQMNR*VRNLTT Trigger: TGTAGTGAGATTTCTGACCAAACGGTTCATCTGGGA...AACTGCCAAGAGTTTATGATCCTTCTCTTCATTTCCTGCCCCATATCCTGAGAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000032347.11 ENSMUST00000117919.8 |
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| CDS-3UTR CAA 90 bp | GGCCAAATCTCAGGATATGGGGCAGGAAATGAAGAGAAGGATCATAAACTCTTGATTTTGGTGAGCATCTaGTTAATCGCTTGCTTGACG | + |
|
Preference number: 5 (lower is better) Translates to: GQISGYGAGNEEKDHKLLILVSI*LIACLT Trigger: CGTCAAGCAAGCGATTAACAAGATGCTCACCAAAAT...CAAGAGTTTATGATCCTTCTCTTCATTTCCTGCCCCATATCCTGAGATTTGGCC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000032347.11 ENSMUST00000117919.8 |
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| CDS-3UTR CAA 90 bp | CTTTCTGAATGCATAGGATTCTGCCTTTGCTTCCAAAGAGAAATAACTAAGCGCATTTTGGTGAGCATCTaGTTAATCGCTTGCTTGACG | + |
|
Preference number: 5 (lower is better) Translates to: LSECIGFCLCFQREITKRILVSI*LIACLT Trigger: CGTCAAGCAAGCGATTAACAAGATGCTCACCAAAAT...GCGCTTAGTTATTTCTCTTTGGAAGCAAAGGCAGAATCCTATGCATTCAGAAAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000032347.11 ENSMUST00000117919.8 |
||
| CDS GCA 72 bp | ACGTGTGTGGTGGAGCTGCGGCGCCTTGTCTTGCCCTaGACCATCCTTCTGCGACGCACCTCTCGACAGAGC | + |
|
Preference number: 6 (lower is better) Translates to: TCVVELRRLVLP*TILLRRTSRQS Trigger: GCTCTGTCGAGAGGTGCGTCGCAGAAGGATGGTGCAGGGCAAGACAAGGCGCCGCAGCTCCACCACACACGT 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000032347.11 ENSMUST00000117919.8 ENSMUST00000119610.4 |
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| CDS CAA 72 bp | TGCTTGACGTGTGTGGTGGAGCTGCGGCGCCTTGTCTaGCCCTGCACCATCCTTCTGCGACGCACCTCTCGA | + |
|
Preference number: 6 (lower is better) Translates to: CLTCVVELRRLV*PCTILLRRTSR Trigger: TCGAGAGGTGCGTCGCAGAAGGATGGTGCAGGGCAAGACAAGGCGCCGCAGCTCCACCACACACGTCAAGCA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000032347.11 ENSMUST00000117919.8 ENSMUST00000119610.4 |
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| CDS GCA 72 bp | AGCTGCGGCGCCTTGTCTTGCCCTGCACCATCCTTCTaGGACGCACCTCTCGACAGAGCTCATAGAACACCT | + |
|
Preference number: 6 (lower is better) Translates to: SCGALSCPAPSF*DAPLDRAHRTP Trigger: AGGTGTTCTATGAGCTCTGTCGAGAGGTGCGTCGCAGAAGGATGGTGCAGGGCAAGACAAGGCGCCGCAGCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000032347.11 ENSMUST00000117919.8 ENSMUST00000119610.4 |
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| CDS CAA 90 bp | TTAATCGCTTGCTTGACGTGTGTGGTGGAGCTGCGGCGCCTTGTCTaGCCCTGCACCATCCTTCTGCGACGCACCTCTCGACAGAGCTCA | + |
|
Preference number: 6 (lower is better) Translates to: LIACLTCVVELRRLV*PCTILLRRTSRQSS Trigger: TGAGCTCTGTCGAGAGGTGCGTCGCAGAAGGATGGTGCAGGGCAAGACAAGGCGCCGCAGCTCCACCACACACGTCAAGCAAGCGATTAA 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000032347.11 ENSMUST00000117919.8 ENSMUST00000119610.4 |
||
| CDS TCA 72 bp | TCAGCGGCAGCACTTCTTCGAAGCTCCCTCGATCGGTaGTGTCGTAAACCAACACGAAGCCTTCTCCCCAGC | + |
|
Preference number: 6 (lower is better) Translates to: SAAALLRSSLDR*CRKPTRSLLPS Trigger: GCTGGGGAGAAGGCTTCGTGTTGGTTTACGACATCACCGATCGAGGGAGCTTCGAAGAAGTGCTGCCGCTGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000032347.11 ENSMUST00000117919.8 ENSMUST00000119610.4 ENSMUST00000203003.2 |
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| CDS TCA 72 bp | GACGCACCTCTCGACAGAGCTCATAGAACACCTCCGTaGTGTTCCCTTCTCCCGTGCAGGCGGAACATTCGT | + |
|
Preference number: 6 (lower is better) Translates to: DAPLDRAHRTPP*CSLLPCRRNIR Trigger: ACGAATGTTCCGCCTGCACGGGAGAAGGGAACATCACGGAGGTGTTCTATGAGCTCTGTCGAGAGGTGCGTC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000032347.11 ENSMUST00000117919.8 ENSMUST00000119610.4 |
||
| CDS GCA 72 bp | ACGCCAGTTCCGTCGCCAGCTTCTCCCCTTCTTCTGTaGTCACTTGTCTGGAGTGGTCCAAGTCGGCTTTGT | + |
|
Preference number: 6 (lower is better) Translates to: TPVPSPASPLLL*SLVWSGPSRLC Trigger: ACAAAGCCGACTTGGACCACTCCAGACAAGTGAGCACAGAAGAAGGGGAGAAGCTGGCGACGGAACTGGCGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000032347.11 ENSMUST00000117919.8 ENSMUST00000119610.4 |
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| CDS CAA 90 bp | ACACGCCAGTTCCGTCGCCAGCTTCTCCCCTTCTTCTGTGCTCACTaGTCTGGAGTGGTCCAAGTCGGCTTTGTTTCCGACCAAGATGAG | + |
|
Preference number: 6 (lower is better) Translates to: TRQFRRQLLPFFCAH*SGVVQVGFVSDQDE Trigger: CTCATCTTGGTCGGAAACAAAGCCGACTTGGACCACTCCAGACAAGTGAGCACAGAAGAAGGGGAGAAGCTGGCGACGGAACTGGCGTGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000032347.11 ENSMUST00000117919.8 ENSMUST00000119610.4 |
||
| CDS CAA 72 bp | TTCCGTCGCCAGCTTCTCCCCTTCTTCTGTGCTCACTaGTCTGGAGTGGTCCAAGTCGGCTTTGTTTCCGAC | + |
|
Preference number: 6 (lower is better) Translates to: FRRQLLPFFCAH*SGVVQVGFVSD Trigger: GTCGGAAACAAAGCCGACTTGGACCACTCCAGACAAGTGAGCACAGAAGAAGGGGAGAAGCTGGCGACGGAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000032347.11 ENSMUST00000117919.8 ENSMUST00000119610.4 |
||
| CDS CCA 72 bp | TCGCCAGCTTCTCCCCTTCTTCTGTGCTCACTTGTCTaGAGTGGTCCAAGTCGGCTTTGTTTCCGACCAAGA | + |
|
Preference number: 6 (lower is better) Translates to: SPASPLLLCSLV*SGPSRLCFRPR Trigger: TCTTGGTCGGAAACAAAGCCGACTTGGACCACTCCAGACAAGTGAGCACAGAAGAAGGGGAGAAGCTGGCGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000032347.11 ENSMUST00000117919.8 ENSMUST00000119610.4 |
||
| CDS CAA 72 bp | GGCCAACAAGGGCTACATAGTGAGATACTGTCTGACTaGCCCACGCCCGCTCTTCCAAATATGGCCAGCTTG | + |
|
Preference number: 6 (lower is better) Translates to: GQQGLHSEILSD*PTPALPNMASL Trigger: CAAGCTGGCCATATTTGGAAGAGCGGGCGTGGGCAAGTCAGACAGTATCTCACTATGTAGCCCTTGTTGGCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000149100.3 |
||
| CDS CAA 90 bp | TCCCAGATGAACCGTTTGGTCAGAAATCTCACTACAATCGCTGACTaGCCCACGCCCGCTCTTCCAAATATGGCCAGCTTGACCTCTGCG | + |
|
Preference number: 6 (lower is better) Translates to: SQMNRLVRNLTTIAD*PTPALPNMASLTSA Trigger: CGCAGAGGTCAAGCTGGCCATATTTGGAAGAGCGGGCGTGGGCAAGTCAGCGATTGTAGTGAGATTTCTGACCAAACGGTTCATCTGGGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032347.11 ENSMUST00000117919.8 |
||
| CDS CAA 72 bp | AACCGTTTGGTCAGAAATCTCACTACAATCGCTGACTaGCCCACGCCCGCTCTTCCAAATATGGCCAGCTTG | + |
|
Preference number: 6 (lower is better) Translates to: NRLVRNLTTIAD*PTPALPNMASL Trigger: CAAGCTGGCCATATTTGGAAGAGCGGGCGTGGGCAAGTCAGCGATTGTAGTGAGATTTCTGACCAAACGGTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032347.11 ENSMUST00000117919.8 |
||
| CDS CAA 72 bp | CTACTGATTTTGGTGAGCATCTTGTTAATCGCTTGCTaGACGTGTGTGGTGGAGCTGCGGCGCCTTGTCTTG | + |
|
Preference number: 6 (lower is better) Translates to: LLILVSILLIAC*TCVVELRRLVL Trigger: CAAGACAAGGCGCCGCAGCTCCACCACACACGTCAAGCAAGCGATTAACAAGATGCTCACCAAAATCAGTAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000032347.11 ENSMUST00000117919.8 ENSMUST00000119610.4 |
||
| CDS CAA 72 bp | GATTCGAGGGTTGGATCGTACTCCCAGATGAACCGTTaGGTCAGAAATCTCACTACAATCGCTGACTTGCCC | + |
|
Preference number: 6 (lower is better) Translates to: DSRVGSYSQMNR*VRNLTTIADLP Trigger: GGGCAAGTCAGCGATTGTAGTGAGATTTCTGACCAAACGGTTCATCTGGGAGTACGATCCAACCCTCGAATC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032347.11 ENSMUST00000117919.8 |
||
| CDS CAA 72 bp | TCTGTGCTCACTTGTCTGGAGTGGTCCAAGTCGGCTTaGTTTCCGACCAAGATGAGAGTCACGTTTTTGGGT | + |
|
Preference number: 6 (lower is better) Translates to: SVLTCLEWSKSA*FPTKMRVTFLG Trigger: ACCCAAAAACGTGACTCTCATCTTGGTCGGAAACAAAGCCGACTTGGACCACTCCAGACAAGTGAGCACAGA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000032347.11 ENSMUST00000117919.8 ENSMUST00000119610.4 |
||
| CDS CAA 72 bp | CTAACTACTGATTTTGGTGAGCATCTTGTTAATCGCTaGCTTGACGTGTGTGGTGGAGCTGCGGCGCCTTGT | + |
|
Preference number: 6 (lower is better) Translates to: LTTDFGEHLVNR*LDVCGGAAAPC Trigger: ACAAGGCGCCGCAGCTCCACCACACACGTCAAGCAAGCGATTAACAAGATGCTCACCAAAATCAGTAGTTAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000032347.11 ENSMUST00000117919.8 ENSMUST00000119610.4 |
||
| CDS TCA 72 bp | GGTAGGTTGATTCGAGGGTTGGATCGTACTCCCAGATaGACCGTTTGGTCAGAAATCTCACTACAATCGCTG | + |
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Preference number: 6 (lower is better) Translates to: GRLIRGLDRTPR*TVWSEISLQSL Trigger: CAGCGATTGTAGTGAGATTTCTGACCAAACGGTTCATCTGGGAGTACGATCCAACCCTCGAATCAACCTACC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032347.11 ENSMUST00000117919.8 |
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| CDS CAA 90 bp | TCGGCTTTGTTTCCGACCAAGATGAGAGTCACGTTTTTGGGTTTTTaGACTTCATCTAAGATGTTCTTCAGCGGCAGCACTTCTTCGAAG | + |
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Preference number: 6 (lower is better) Translates to: SALFPTKMRVTFLGF*TSSKMFFSGSTSSK Trigger: CTTCGAAGAAGTGCTGCCGCTGAAGAACATCTTAGATGAAGTCAAAAAACCCAAAAACGTGACTCTCATCTTGGTCGGAAACAAAGCCGA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 3 transcripts: ENSMUST00000032347.11 ENSMUST00000117919.8 ENSMUST00000119610.4 |
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