RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for RER1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000029048

Ensembl transcript IDs: ENSMUST00000030914.4

Found 34 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp CAGGAAGGCAGCTCTCCAGGGCCGCACTCCCGTCCTCCCTCTCGGTaGTTGCCACCCACCTCGCCTCCCAAGCCTACGGTTCACTACAAT +
Preference number: 1 (lower is better)
Translates to: QEGSSPGPHSRPPSR*LPPTSPPKPTVHYN
Trigger: ATTGTAGTGAACCGTAGGCTTGGGAGGCGAGGTGGGTGGCAACCACCGAGAGGGAGGACGGGAGTGCGGCCCTGGAGAGCTGCCTTCCTG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030914.4
3UTR GCA 90 bp AAGGCAGCTCTCCAGGGCCGCACTCCCGTCCTCCCTCTCGGTGGTTaGCACCCACCTCGCCTCCCAAGCCTACGGTTCACTACAATCTGT +
Preference number: 1 (lower is better)
Translates to: KAALQGRTPVLPLGG*HPPRLPSLRFTTIC
Trigger: ACAGATTGTAGTGAACCGTAGGCTTGGGAGGCGAGGTGGGTGGCAACCACCGAGAGGGAGGACGGGAGTGCGGCCCTGGAGAGCTGCCTT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030914.4
3UTR CCA 90 bp ATCACCCTCAAAGCGGTACAGTCTTTTTCACAGCAGGAAGCAGGCTaGCTTGTCCCTCTGGCACAGAGGAGTGGCCTCAGCGGGGTCAGG +
Preference number: 1 (lower is better)
Translates to: ITLKAVQSFSQQEAG*LVPLAQRSGLSGVR
Trigger: CCTGACCCCGCTGAGGCCACTCCTCTGTGCCAGAGGGACAAGCCAGCCTGCTTCCTGCTGTGAAAAAGACTGTACCGCTTTGAGGGTGAT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000030914.4
3UTR CAA 90 bp GAAGGCAGCTCTCCAGGGCCGCACTCCCGTCCTCCCTCTCGGTGGTaGCCACCCACCTCGCCTCCCAAGCCTACGGTTCACTACAATCTG +
Preference number: 2 (lower is better)
Translates to: EGSSPGPHSRPPSRW*PPTSPPKPTVHYNL
Trigger: CAGATTGTAGTGAACCGTAGGCTTGGGAGGCGAGGTGGGTGGCAACCACCGAGAGGGAGGACGGGAGTGCGGCCCTGGAGAGCTGCCTTC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030914.4
3UTR-3UTR CCA 90 bp GATTCAGACACTGGCATGAGAACCCCACAGAGCTCTGTGAAATCACCCTCAAAGTCTGGCACAGAGGAGTaGCCTCAGCGGGGTCAGGAA +
Preference number: 2 (lower is better)
Translates to: DSDTGMRTPQSSVKSPSKSGTEE*PQRGQE
Trigger: TTCCTGACCCCGCTGAGGCCACTCCTCTGTGCCAGA...CTTTGAGGGTGATTTCACAGAGCTCTGTGGGGTTCTCATGCCAGTGTCTGAATC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000030914.4
3UTR-3UTR GCA 90 bp AGGCCCTCAAAAGCAATCATGGTAGTTAAGAACATAGTTTTGAGTCATTATGATCTCCCTCTCGGTGGTTaGCACCCACCTCGCCTCCCA +
Preference number: 2 (lower is better)
Translates to: RPSKAIMVVKNIVLSHYDLPLGG*HPPRLP
Trigger: TGGGAGGCGAGGTGGGTGGCAACCACCGAGAGGGAG...ATCATAATGACTCAAAACTATGTTCTTAACTACCATGATTGCTTTTGAGGGCCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000030914.4
3UTR-3UTR CCA 90 bp ATCATGGTAGTTAAGAACATAGTTTTGAGTCATTATGATCGAGGCCAATTCGAGATGAGATTCAGACACTaGCATGAGAACCCCACAGAG +
Preference number: 2 (lower is better)
Translates to: IMVVKNIVLSHYDRGQFEMRFRH*HENPTE
Trigger: CTCTGTGGGGTTCTCATGCCAGTGTCTGAATCTCAT...CTCGAATTGGCCTCGATCATAATGACTCAAAACTATGTTCTTAACTACCATGAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000030914.4
3UTR-3UTR TCA 90 bp ATCATGGTAGTTAAGAACATAGTTTTGAGTCATTATGATCGAGGCCAATTCGAGACATCTCTAGTGAGATaGGATTCAGACACTGGCATG +
Preference number: 2 (lower is better)
Translates to: IMVVKNIVLSHYDRGQFETSLVR*DSDTGM
Trigger: CATGCCAGTGTCTGAATCTCATCTCACTAGAGATGT...CTCGAATTGGCCTCGATCATAATGACTCAAAACTATGTTCTTAACTACCATGAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030914.4
3UTR CAA 90 bp CAGACTTGGTGTGCTCTGGCCCATTCTCTTTCCTTAAAGAGCTTGTaGCATGAGAACAAGTTTAAATTAATCAAAAGCAAATGTTATATA +
Preference number: 2 (lower is better)
Translates to: QTWCALAHSLSLKSL*HENKFKLIKSKCYI
Trigger: TATATAACATTTGCTTTTGATTAATTTAAACTTGTTCTCATGCAACAAGCTCTTTAAGGAAAGAGAATGGGCCAGAGCACACCAAGTCTG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030914.4
3UTR CCA 72 bp AGCTCTCCAGGGCCGCACTCCCGTCCTCCCTCTCGGTaGTTGCCACCCACCTCGCCTCCCAAGCCTACGGTT +
Preference number: 3 (lower is better)
Translates to: SSPGPHSRPPSR*LPPTSPPKPTV
Trigger: AACCGTAGGCTTGGGAGGCGAGGTGGGTGGCAACCACCGAGAGGGAGGACGGGAGTGCGGCCCTGGAGAGCT
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030914.4
3UTR CCA 72 bp GGAAGCAGGCTGGCTTGTCCCTCTGGCACAGAGGAGTaGCCTCAGCGGGGTCAGGAAGGCAGCTCTCCAGGG +
Preference number: 3 (lower is better)
Translates to: GSRLACPSGTEE*PQRGQEGSSPG
Trigger: CCCTGGAGAGCTGCCTTCCTGACCCCGCTGAGGCCACTCCTCTGTGCCAGAGGGACAAGCCAGCCTGCTTCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030914.4
3UTR CCA 72 bp AAAGCGGTACAGTCTTTTTCACAGCAGGAAGCAGGCTaGCTTGTCCCTCTGGCACAGAGGAGTGGCCTCAGC +
Preference number: 3 (lower is better)
Translates to: KAVQSFSQQEAG*LVPLAQRSGLS
Trigger: GCTGAGGCCACTCCTCTGTGCCAGAGGGACAAGCCAGCCTGCTTCCTGCTGTGAAAAAGACTGTACCGCTTT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000030914.4
3UTR-3UTR CAA 90 bp ATGAGATTCAGACACTGGCATGAGAACCCCACAGAGCTCTGTGAAATCACCCTCGTGAAGAAAAAGGCATaGTTACAATGGCTCAAAACC +
Preference number: 3 (lower is better)
Translates to: MRFRHWHENPTELCEITLVKKKA*LQWLKT
Trigger: GGTTTTGAGCCATTGTAACAATGCCTTTTTCTTCAC...GAGGGTGATTTCACAGAGCTCTGTGGGGTTCTCATGCCAGTGTCTGAATCTCAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000030914.4
3UTR CAA 72 bp CGGTACAGTCTTTTTCACAGCAGGAAGCAGGCTGGCTaGTCCCTCTGGCACAGAGGAGTGGCCTCAGCGGGG +
Preference number: 4 (lower is better)
Translates to: RYSLFHSRKQAG*SLWHRGVASAG
Trigger: CCCCGCTGAGGCCACTCCTCTGTGCCAGAGGGACAAGCCAGCCTGCTTCCTGCTGTGAAAAAGACTGTACCG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000030914.4
CDS-3UTR TCA 90 bp AGGGCCGCACTCCCGTCCTCCCTCTCGGTGGTTGCCACCCACCTCGCCTCCCAAAATCTGTCCAAGCCGTaGGAAAAATCTGTACACCAC +
Preference number: 4 (lower is better)
Translates to: RAALPSSLSVVATHLASQNLSKP*EKSVHH
Trigger: GTGGTGTACAGATTTTTCTCACGGCTTGGACAGATT...TTGGGAGGCGAGGTGGGTGGCAACCACCGAGAGGGAGGACGGGAGTGCGGCCCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000030914.4
CDS-3UTR CCA 90 bp GAAGCAGGCTGGCTTGTCCCTCTGGCACAGAGGAGTGGCCTCAGCGGGGTCAGGGATCGGCCAGAACACTaGGACGTTAAAAGCCTCGAA +
Preference number: 4 (lower is better)
Translates to: EAGWLVPLAQRSGLSGVRDRPEH*DVKSLE
Trigger: TTCGAGGCTTTTAACGTCCCAGTGTTCTGGCCGATC...CCTGACCCCGCTGAGGCCACTCCTCTGTGCCAGAGGGACAAGCCAGCCTGCTTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000030914.4
CDS-3UTR CCA 90 bp AGGGCCGCACTCCCGTCCTCCCTCTCGGTGGTTGCCACCCACCTCGCCTCCCAACTTCCCGTGTGTGAATaGTATGTACCGGTATTTAAT +
Preference number: 4 (lower is better)
Translates to: RAALPSSLSVVATHLASQLPVCE*YVPVFN
Trigger: ATTAAATACCGGTACATACCATTCACACACGGGAAG...TTGGGAGGCGAGGTGGGTGGCAACCACCGAGAGGGAGGACGGGAGTGCGGCCCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030914.4
CDS-3UTR GCA 90 bp TTGTCCCTCTGGCACAGAGGAGTGGCCTCAGCGGGGTCAGGAAGGCAGCTCTCCATCATGTGCTTGATTTaGCTCTTCATTGTGATACAG +
Preference number: 4 (lower is better)
Translates to: LSLWHRGVASAGSGRQLSIMCLI*LFIVIQ
Trigger: CTGTATCACAATGAAGAGGCAAATCAAGCACATGAT...GGAGAGCTGCCTTCCTGACCCCGCTGAGGCCACTCCTCTGTGCCAGAGGGACAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030914.4
CDS-3UTR TCA 90 bp GATTCAGACACTGGCATGAGAACCCCACAGAGCTCTGTGAAATCACCCTCAAAGTCCTCTTCCCGTGTGTaGATGGTATGTACCGGTATT +
Preference number: 4 (lower is better)
Translates to: DSDTGMRTPQSSVKSPSKSSSRV*MVCTGI
Trigger: AATACCGGTACATACCATTCACACACGGGAAGAGGA...CTTTGAGGGTGATTTCACAGAGCTCTGTGGGGTTCTCATGCCAGTGTCTGAATC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030914.4
CDS-3UTR CCA 90 bp GATTCAGACACTGGCATGAGAACCCCACAGAGCTCTGTGAAATCACCCTCAAAGATTCCTCATTCTGTTTaGTTGGTAATGAAGGGCCGT +
Preference number: 4 (lower is better)
Translates to: DSDTGMRTPQSSVKSPSKIPHSV*LVMKGR
Trigger: ACGGCCCTTCATTACCAACCAAACAGAATGAGGAAT...CTTTGAGGGTGATTTCACAGAGCTCTGTGGGGTTCTCATGCCAGTGTCTGAATC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030914.4
CDS-3UTR GCA 90 bp ATGAGATTCAGACACTGGCATGAGAACCCCACAGAGCTCTGTGAAATCACCCTCCCTTTTGTAGCTGCGTaGCAAAATTTGAATTCTGGA +
Preference number: 4 (lower is better)
Translates to: MRFRHWHENPTELCEITLPFVAA*QNLNSG
Trigger: TCCAGAATTCAAATTTTGGCACGCAGCTACAAAAGG...GAGGGTGATTTCACAGAGCTCTGTGGGGTTCTCATGCCAGTGTCTGAATCTCAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000030914.4
CDS-3UTR GCA 90 bp ATGAGATTCAGACACTGGCATGAGAACCCCACAGAGCTCTGTGAAATCACCCTCCGGTATTTAATCATGTaGTTGATTTGCCTCTTCATT +
Preference number: 4 (lower is better)
Translates to: MRFRHWHENPTELCEITLRYLIM*LICLFI
Trigger: AATGAAGAGGCAAATCAAGCACATGATTAAATACCG...GAGGGTGATTTCACAGAGCTCTGTGGGGTTCTCATGCCAGTGTCTGAATCTCAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030914.4
CDS-3UTR TCA 90 bp AGGCCCTCAAAAGCAATCATGGTAGTTAAGAACATAGTTTTGAGTCATTATGATCTGGAAGCCTTCGAATaGAGGGACGAAATTCCTCAT +
Preference number: 4 (lower is better)
Translates to: RPSKAIMVVKNIVLSHYDLEAFE*RDEIPH
Trigger: ATGAGGAATTTCGTCCCTTCATTCGAAGGCTTCCAG...ATCATAATGACTCAAAACTATGTTCTTAACTACCATGATTGCTTTTGAGGGCCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000030914.4
CDS-3UTR CAA 90 bp CCAGGGCCGCACTCCCGTCCTCCCTCTCGGTGGTTGCCACCCACCTCGCCTCCCAAGGAAGGATCCACTTaGGGAGAAAGGAACGCAATG +
Preference number: 5 (lower is better)
Translates to: PGPHSRPPSRWLPPTSPPKEGST*GERNAM
Trigger: CATTGCGTTCCTTTCTCCCAAAGTGGATCCTTCCTT...GGGAGGCGAGGTGGGTGGCAACCACCGAGAGGGAGGACGGGAGTGCGGCCCTGG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030914.4
CDS-3UTR CAA 90 bp TTGTCCCTCTGGCACAGAGGAGTGGCCTCAGCGGGGTCAGGAAGGCAGCTCTCCACGTCCTCCTTCCCTTaGTATCTCCTCTTCCCGTGT +
Preference number: 5 (lower is better)
Translates to: LSLWHRGVASAGSGRQLSTSSFP*YLLFPC
Trigger: ACACGGGAAGAGGAGATACAAAGGGAAGGAGGACGT...GGAGAGCTGCCTTCCTGACCCCGCTGAGGCCACTCCTCTGTGCCAGAGGGACAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030914.4
CDS-3UTR CAA 90 bp ATCTCTAGTGAGATGAGATTCAGACACTGGCATGAGAACCCCACAGAGCTCTGTGCTGCGTGCCAAAATTaGAATTCTGGAAGCCTTCGA +
Preference number: 5 (lower is better)
Translates to: ISSEMRFRHWHENPTELCAACQN*NSGSLR
Trigger: TCGAAGGCTTCCAGAATTCAAATTTTGGCACGCAGC...ACAGAGCTCTGTGGGGTTCTCATGCCAGTGTCTGAATCTCATCTCACTAGAGAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000030914.4
CDS CCA 90 bp ACAGAAAAGCATGATGAAGTACATCACCAGGATCGGCCAGAACACTaGGACGTTAAAAGCCTCGAAGAAGGTACAGATCATAGCCACAAG +
Preference number: 5 (lower is better)
Translates to: TEKHDEVHHQDRPEH*DVKSLEEGTDHSHK
Trigger: CTTGTGGCTATGATCTGTACCTTCTTCGAGGCTTTTAACGTCCCAGTGTTCTGGCCGATCCTGGTGATGTACTTCATCATGCTTTTCTGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000030914.4
CDS TCA 90 bp AGTCTTCCATCAAGGAAGGATCCACTTTGGGAGAAAGGAACGCAATaGAAAGGTTTAGGTGGTAAATTCCCAAGGCGTAGGTCACAATGT +
Preference number: 5 (lower is better)
Translates to: SLPSRKDPLWEKGTQ*KGLGGKFPRRRSQC
Trigger: ACATTGTGACCTACGCCTTGGGAATTTACCACCTAAACCTTTTCATTGCGTTCCTTTCTCCCAAAGTGGATCCTTCCTTGATGGAAGACT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030914.4
CDS-3UTR CAA 90 bp CTTTATGTGAAGAAAAAGGCATTGTTACAATGGCTCAAAACCGTTCTTGAGTCCAATCATGTGCTTGATTaGCCTCTTCATTGTGATACA +
Preference number: 5 (lower is better)
Translates to: LYVKKKALLQWLKTVLESNHVLD*PLHCDT
Trigger: TGTATCACAATGAAGAGGCAAATCAAGCACATGATT...GGACTCAAGAACGGTTTTGAGCCATTGTAACAATGCCTTTTTCTTCACATAAAG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000030914.4
CDS CCA 72 bp CATGATGAAGTACATCACCAGGATCGGCCAGAACACTaGGACGTTAAAAGCCTCGAAGAAGGTACAGATCAT +
Preference number: 6 (lower is better)
Translates to: HDEVHHQDRPEH*DVKSLEEGTDH
Trigger: ATGATCTGTACCTTCTTCGAGGCTTTTAACGTCCCAGTGTTCTGGCCGATCCTGGTGATGTACTTCATCATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030914.4
CDS CAA 72 bp CCGTCATCTGAGTCTTCCATCAAGGAAGGATCCACTTaGGGAGAAAGGAACGCAATGAAAAGGTTTAGGTGG +
Preference number: 6 (lower is better)
Translates to: PSSESSIKEGST*GERNAMKRFRW
Trigger: CCACCTAAACCTTTTCATTGCGTTCCTTTCTCCCAAAGTGGATCCTTCCTTGATGGAAGACTCAGATGACGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030914.4
CDS CAA 72 bp AGCCTTCGAATGAAGGGACGAAATTCCTCATTCTGTTaGGTTGGTAATGAAGGGCCGTCATCTGAGTCTTCC +
Preference number: 6 (lower is better)
Translates to: SLRMKGRNSSFC*VGNEGPSSESS
Trigger: GGAAGACTCAGATGACGGCCCTTCATTACCAACCAAACAGAATGAGGAATTTCGTCCCTTCATTCGAAGGCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030914.4
CDS TCA 72 bp TCAAGGAAGGATCCACTTTGGGAGAAAGGAACGCAATaGAAAGGTTTAGGTGGTAAATTCCCAAGGCGTAGG +
Preference number: 6 (lower is better)
Translates to: SRKDPLWEKGTQ*KGLGGKFPRRR
Trigger: CCTACGCCTTGGGAATTTACCACCTAAACCTTTTCATTGCGTTCCTTTCTCCCAAAGTGGATCCTTCCTTGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030914.4
CDS CAA 90 bp AATTCTGGAAGCCTTCGAATGAAGGGACGAAATTCCTCATTCTGTTaGGTTGGTAATGAAGGGCCGTCATCTGAGTCTTCCATCAAGGAA +
Preference number: 6 (lower is better)
Translates to: NSGSLRMKGRNSSFC*VGNEGPSSESSIKE
Trigger: TTCCTTGATGGAAGACTCAGATGACGGCCCTTCATTACCAACCAAACAGAATGAGGAATTTCGTCCCTTCATTCGAAGGCTTCCAGAATT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030914.4