Pregenerated sensors for REN1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000070645Ensembl transcript IDs: ENSMUST00000094556.3
Found 42 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 72 bp | CACTCGTTAGGGTCTCTGTGTCCAGTGTCCCTATGTTaGGGACAAAGCCAGACAAAATGGCCCCCAGGACTG | + |
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Preference number: 3 (lower is better) Translates to: HSLGSLCPVSLC*GQSQTKWPPGL Trigger: CAGTCCTGGGGGCCATTTTGTCTGGCTTTGTCCCCAACATAGGGACACTGGACACAGAGACCCTAACGAGTG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000094556.3 |
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| CDS-3UTR CCA 90 bp | GGACAAAGCCAGACAAAATGGCCCCCAGGACTGCCAGCTTGGCTTGGCCTAGGGCCCAGACAGGCCCAGTaGGTGGTGGGATGTCCATGG | + |
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Preference number: 4 (lower is better) Translates to: GQSQTKWPPGLPAWLGLGPRQAQ*VVGCPW Trigger: CCATGGACATCCCACCACCCACTGGGCCTGTCTGGG...CCCTAGGCCAAGCCAAGCTGGCAGTCCTGGGGGCCATTTTGTCTGGCTTTGTCC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000094556.3 |
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| CDS-3UTR TCA 90 bp | ATGGCCCCCAGGACTGCCAGCTTGGCTTGGCCTAGGGTTACTGGGTGGCAGAGGCAAACTTGGCCAGCATaGAAGGGATCAGGGGCAGCT | + |
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Preference number: 4 (lower is better) Translates to: MAPRTASLAWPRVTGWQRQTWPA*KGSGAA Trigger: AGCTGCCCCTGATCCCTTTCATGCTGGCCAAGTTTG...CCTCTGCCACCCAGTAACCCTAGGCCAAGCCAAGCTGGCAGTCCTGGGGGCCAT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000094556.3 |
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| CDS-3UTR CCA 90 bp | ATGGCCCCCAGGACTGCCAGCTTGGCTTGGCCTAGGGTTACTGGGTGGCAGAGGCTTCACATAGCAGGGTaGAAGACCCCACAGACACCC | + |
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Preference number: 4 (lower is better) Translates to: MAPRTASLAWPRVTGWQRLHIAG*KTPQTP Trigger: GGGTGTCTGTGGGGTCTTCCACCCTGCTATGTGAAG...CCTCTGCCACCCAGTAACCCTAGGCCAAGCCAAGCTGGCAGTCCTGGGGGCCAT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000094556.3 |
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| 3UTR CAA 72 bp | ACAAAGCCAGACAAAATGGCCCCCAGGACTGCCAGCTaGGCTTGGCCTAGGGTTACTGGGTGGCAGAGGGCC | + |
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Preference number: 4 (lower is better) Translates to: TKPDKMAPRTAS*AWPRVTGWQRA Trigger: GGCCCTCTGCCACCCAGTAACCCTAGGCCAAGCCAAGCTGGCAGTCCTGGGGGCCATTTTGTCTGGCTTTGT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000094556.3 |
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| CDS-3UTR GCA 90 bp | CAAAGCCAGACAAAATGGCCCCCAGGACTGCCAGCTTGGCTTGGCCTAGGGTTACAAGGTAGAGGCGGCTaGACTTGGTGGAGGGCACCC | + |
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Preference number: 4 (lower is better) Translates to: QSQTKWPPGLPAWLGLGLQGRGG*TWWRAP Trigger: GGGTGCCCTCCACCAAGTGCAGCCGCCTCTACCTTG...TAACCCTAGGCCAAGCCAAGCTGGCAGTCCTGGGGGCCATTTTGTCTGGCTTTG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000094556.3 |
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| CDS-3UTR CCA 90 bp | AGCCAGACAAAATGGCCCCCAGGACTGCCAGCTTGGCTTGGCCTAGGGTTACTGAGGCCCAGTGGGTGGTaGGATGTCCATGGCATGGAG | + |
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Preference number: 4 (lower is better) Translates to: SQTKWPPGLPAWLGLGLLRPSGW*DVHGME Trigger: CTCCATGCCATGGACATCCCACCACCCACTGGGCCT...CAGTAACCCTAGGCCAAGCCAAGCTGGCAGTCCTGGGGGCCATTTTGTCTGGCT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000094556.3 |
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| CDS-3UTR TCA 90 bp | GGACAAAGCCAGACAAAATGGCCCCCAGGACTGCCAGCTTGGCTTGGCCTAGGGAGGAAGGCCTCTTTGTaGATACGCCCCATTCAGCAC | + |
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Preference number: 4 (lower is better) Translates to: GQSQTKWPPGLPAWLGLGRKASL*IRPIQH Trigger: GTGCTGAATGGGGCGTATTCACAAAGAGGCCTTCCT...CCCTAGGCCAAGCCAAGCTGGCAGTCCTGGGGGCCATTTTGTCTGGCTTTGTCC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000094556.3 |
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| CDS-3UTR TCA 90 bp | AGCCAGACAAAATGGCCCCCAGGACTGCCAGCTTGGCTTGGCCTAGGGTTACTGCACCCAGAGGTTGGCTaGACCCGTGTCAAAGATGAC | + |
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Preference number: 4 (lower is better) Translates to: SQTKWPPGLPAWLGLGLLHPEVG*TRVKDD Trigger: GTCATCTTTGACACGGGTTCAGCCAACCTCTGGGTG...CAGTAACCCTAGGCCAAGCCAAGCTGGCAGTCCTGGGGGCCATTTTGTCTGGCT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000094556.3 |
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| CDS-3UTR CCA 90 bp | GGACAAAGCCAGACAAAATGGCCCCCAGGACTGCCAGCTTGGCTTGGCCTAGGGATGACTTTGAAGGTCTaGGGTGGGGTACCGATGCCA | + |
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Preference number: 4 (lower is better) Translates to: GQSQTKWPPGLPAWLGLGMTLKV*GGVPMP Trigger: TGGCATCGGTACCCCACCCCAGACCTTCAAAGTCAT...CCCTAGGCCAAGCCAAGCTGGCAGTCCTGGGGGCCATTTTGTCTGGCTTTGTCC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000094556.3 |
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| CDS-3UTR CCA 90 bp | AGCCAGACAAAATGGCCCCCAGGACTGCCAGCTTGGCTTGGCCTAGGGTTACTGAGGGCACCCAGAGGTTaGCTGAACCCGTGTCAAAGA | + |
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Preference number: 4 (lower is better) Translates to: SQTKWPPGLPAWLGLGLLRAPRG*LNPCQR Trigger: TCTTTGACACGGGTTCAGCCAACCTCTGGGTGCCCT...CAGTAACCCTAGGCCAAGCCAAGCTGGCAGTCCTGGGGGCCATTTTGTCTGGCT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000094556.3 |
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| CDS-3UTR CCA 90 bp | CAAAGCCAGACAAAATGGCCCCCAGGACTGCCAGCTTGGCTTGGCCTAGGGTTAGTGGTGGGATGTCCATaGCATGGAGAGCCAGTGTGC | + |
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Preference number: 4 (lower is better) Translates to: QSQTKWPPGLPAWLGLGLVVGCP*HGEPVC Trigger: GCACACTGGCTCTCCATGCCATGGACATCCCACCAC...TAACCCTAGGCCAAGCCAAGCTGGCAGTCCTGGGGGCCATTTTGTCTGGCTTTG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000094556.3 |
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| CDS-3UTR GCA 90 bp | AGCCAGACAAAATGGCCCCCAGGACTGCCAGCTTGGCTTGGCCTAGGGTTACTGCCCTTCATCGTGATCTaGCAGGAGTCAGTCTTGCTG | + |
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Preference number: 4 (lower is better) Translates to: SQTKWPPGLPAWLGLGLLPFIVI*QESVLL Trigger: CAGCAAGACTGACTCCTGGCAGATCACGATGAAGGG...CAGTAACCCTAGGCCAAGCCAAGCTGGCAGTCCTGGGGGCCATTTTGTCTGGCT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000094556.3 |
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| CDS-3UTR CCA 90 bp | GGACAAAGCCAGACAAAATGGCCCCCAGGACTGCCAGCTTGGCTTGGCCTAGGGGCTTGTCTCTCCTGTTaGGATACTGTAGCACGTAGT | + |
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Preference number: 4 (lower is better) Translates to: GQSQTKWPPGLPAWLGLGACLSC*DTVARS Trigger: ACTACGTGCTACAGTATCCCAACAGGAGAGACAAGC...CCCTAGGCCAAGCCAAGCTGGCAGTCCTGGGGGCCATTTTGTCTGGCTTTGTCC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000094556.3 |
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| CDS-3UTR CCA 90 bp | CAAAGCCAGACAAAATGGCCCCCAGGACTGCCAGCTTGGCTTGGCCTAGGGTTATCCTTTAGCACCCCCTaGGAGAGAATGTGGTCAAAG | + |
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Preference number: 4 (lower is better) Translates to: QSQTKWPPGLPAWLGLGLSFSTP*ERMWSK Trigger: CTTTGACCACATTCTCTCCCAGGGGGTGCTAAAGGA...TAACCCTAGGCCAAGCCAAGCTGGCAGTCCTGGGGGCCATTTTGTCTGGCTTTG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000094556.3 |
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| CDS-3UTR CCA 90 bp | GATTTTTCCTTAAAGCAGGGAAGGGTGAGTGCAGGTGAAGGGGCAAACACTCGTGACAGGCCCAGTGGGTaGTGGGATGTCCATGGCATG | + |
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Preference number: 4 (lower is better) Translates to: DFSLKQGRVSAGEGANTRDRPSG*WDVHGM Trigger: CATGCCATGGACATCCCACCACCCACTGGGCCTGTC...ACGAGTGTTTGCCCCTTCACCTGCACTCACCCTTCCCTGCTTTAAGGAAAAATC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000094556.3 |
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| CDS-3UTR TCA 90 bp | GATTTTTCCTTAAAGCAGGGAAGGGTGAGTGCAGGTGAAGGGGCAAACACTCGTAGGTCTGTGTCACAGTaGTTCCACCCACAGTCACCG | + |
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Preference number: 4 (lower is better) Translates to: DFSLKQGRVSAGEGANTRRSVSQ*FHPQSP Trigger: CGGTGACTGTGGGTGGAATCACTGTGACACAGACCT...ACGAGTGTTTGCCCCTTCACCTGCACTCACCCTTCCCTGCTTTAAGGAAAAATC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000094556.3 |
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| CDS-3UTR GCA 90 bp | GATTTTTCCTTAAAGCAGGGAAGGGTGAGTGCAGGTGAAGGGGCAAACACTCGTCCAGAGCAACAAGAGTaGCCAGAGAGGCATCCTCCT | + |
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Preference number: 4 (lower is better) Translates to: DFSLKQGRVSAGEGANTRPEQQE*PERHPP Trigger: AGGAGGATGCCTCTCTGGGCACTCTTGTTGCTCTGG...ACGAGTGTTTGCCCCTTCACCTGCACTCACCCTTCCCTGCTTTAAGGAAAAATC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000094556.3 |
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| CDS-3UTR CCA 90 bp | GATTTTTCCTTAAAGCAGGGAAGGGTGAGTGCAGGTGAAGGGGCAAACACTCGTAAATGTCGGGGAGGGTaGGCACCTGGCTACAGTTCA | + |
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Preference number: 4 (lower is better) Translates to: DFSLKQGRVSAGEGANTRKCRGG*APGYSS Trigger: TGAACTGTAGCCAGGTGCCCACCCTCCCCGACATTT...ACGAGTGTTTGCCCCTTCACCTGCACTCACCCTTCCCTGCTTTAAGGAAAAATC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000094556.3 |
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| CDS-3UTR GCA 90 bp | GATTTTTCCTTAAAGCAGGGAAGGGTGAGTGCAGGTGAAGGGGCAAACACTCGTTTGGCTCCCAGGGCTTaGATGATCAACTTCAGGGAG | + |
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Preference number: 4 (lower is better) Translates to: DFSLKQGRVSAGEGANTRLAPRA*MINFRE Trigger: CTCCCTGAAGTTGATCATGCAAGCCCTGGGAGCCAA...ACGAGTGTTTGCCCCTTCACCTGCACTCACCCTTCCCTGCTTTAAGGAAAAATC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000094556.3 |
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| CDS-3UTR GCA 90 bp | GATTTTTCCTTAAAGCAGGGAAGGGTGAGTGCAGGTGAAGGGGCAAACACTCGTCATGGAGAGCCAGTGTaGACAGCTTGTCTCTCCTGT | + |
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Preference number: 4 (lower is better) Translates to: DFSLKQGRVSAGEGANTRHGEPV*TACLSC Trigger: ACAGGAGAGACAAGCTGTGCACACTGGCTCTCCATG...ACGAGTGTTTGCCCCTTCACCTGCACTCACCCTTCCCTGCTTTAAGGAAAAATC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000094556.3 |
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| CDS-3UTR TCA 90 bp | GATTTTTCCTTAAAGCAGGGAAGGGTGAGTGCAGGTGAAGGGGCAAACACTCGTCAGAAGGCATTTTCTTaGGCGGGATTCGTTCAAAGG | + |
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Preference number: 4 (lower is better) Translates to: DFSLKQGRVSAGEGANTRQKAFS*AGFVQR Trigger: CCTTTGAACGAATCCCGCTCAAGAAAATGCCTTCTG...ACGAGTGTTTGCCCCTTCACCTGCACTCACCCTTCCCTGCTTTAAGGAAAAATC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000094556.3 |
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| CDS-3UTR TCA 90 bp | ATGAAATCTTTATTCGATTTTTCCTTAAAGCAGGGAAGGGTGAGTGCAGGTGAATCAGGGGCAGCTCGGTaGCCTCTCCAAAGGTCTGTG | + |
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Preference number: 4 (lower is better) Translates to: MKSLFDFSLKQGRVSAGESGAAR*PLQRSV Trigger: CACAGACCTTTGGAGAGGTCACCGAGCTGCCCCTGA...TTCACCTGCACTCACCCTTCCCTGCTTTAAGGAAAAATCGAATAAAGATTTCAT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000094556.3 |
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| CDS-3UTR TCA 90 bp | ATGAAATCTTTATTCGATTTTTCCTTAAAGCAGGGAAGGGTGAGTGCAGGTGAACGTAGTCCGTACTGCTaGGTGTGTAGGCCCTGCCTC | + |
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Preference number: 4 (lower is better) Translates to: MKSLFDFSLKQGRVSAGERSPYC*VCRPCL Trigger: GAGGCAGGGCCTACACACTCAGCAGTACGGACTACG...TTCACCTGCACTCACCCTTCCCTGCTTTAAGGAAAAATCGAATAAAGATTTCAT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000094556.3 |
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| CDS-3UTR CCA 90 bp | ATGAAATCTTTATTCGATTTTTCCTTAAAGCAGGGAAGGGTGAGTGCAGGTGAAGGGAGGGTGGGCACCTaGCTACAGTTCACAACATAT | + |
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Preference number: 4 (lower is better) Translates to: MKSLFDFSLKQGRVSAGEGRVGT*LQFTTY Trigger: ATATGTTGTGAACTGTAGCCAGGTGCCCACCCTCCC...TTCACCTGCACTCACCCTTCCCTGCTTTAAGGAAAAATCGAATAAAGATTTCAT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000094556.3 |
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| CDS-3UTR CAA 90 bp | ATGGCCCCCAGGACTGCCAGCTTGGCTTGGCCTAGGGTTACTGGGTGGCAGAGGACGGGGGAGGTAAGATaGGTCAAGGAAGGCCTCTTT | + |
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Preference number: 5 (lower is better) Translates to: MAPRTASLAWPRVTGWQRTGEVR*VKEGLF Trigger: AAAGAGGCCTTCCTTGACCAATCTTACCTCCCCCGT...CCTCTGCCACCCAGTAACCCTAGGCCAAGCCAAGCTGGCAGTCCTGGGGGCCAT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000094556.3 |
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| CDS-3UTR CAA 90 bp | ATGGCCCCCAGGACTGCCAGCTTGGCTTGGCCTAGGGTTACTGGGTGGCAGAGGTCTATTCTCTTCTCCTaGGCTCCCAGGGCTTGCATG | + |
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Preference number: 5 (lower is better) Translates to: MAPRTASLAWPRVTGWQRSILFS*APRACM Trigger: CATGCAAGCCCTGGGAGCCAAGGAGAAGAGAATAGA...CCTCTGCCACCCAGTAACCCTAGGCCAAGCCAAGCTGGCAGTCCTGGGGGCCAT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000094556.3 |
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| CDS TCA 90 bp | TGGGAGAGAATGTGGTCAAAGACAGGGGTAACCCCGCCAACGGCCTaGGCGGGAAAGCCCATGCCTAGAACACCGTCAAACTTGGCCAGC | + |
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Preference number: 5 (lower is better) Translates to: WERMWSKTGVTPPTA*AGKPMPRTPSNLAS Trigger: GCTGGCCAAGTTTGACGGTGTTCTAGGCATGGGCTTTCCCGCTCAGGCCGTTGGCGGGGTTACCCCTGTCTTTGACCACATTCTCTCCCA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000094556.3 |
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| CDS GCA 90 bp | CAGGCCCAGTGGGTGGTGGGATGTCCATGGCATGGAGAGCCAGTGTaGACAGCTTGTCTCTCCTGTTGGGATACTGTAGCACGTAGTCCG | + |
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Preference number: 5 (lower is better) Translates to: QAQWVVGCPWHGEPV*TACLSCWDTVARSP Trigger: CGGACTACGTGCTACAGTATCCCAACAGGAGAGACAAGCTGTGCACACTGGCTCTCCATGCCATGGACATCCCACCACCCACTGGGCCTG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094556.3 |
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| CDS-3UTR CAA 90 bp | ATGGCCCCCAGGACTGCCAGCTTGGCTTGGCCTAGGGTTACTGGGTGGCAGAGGAGAACACCGTCAAACTaGGCCAGCATGAAAGGGATC | + |
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Preference number: 5 (lower is better) Translates to: MAPRTASLAWPRVTGWQRRTPSN*ASMKGI Trigger: GATCCCTTTCATGCTGGCCAAGTTTGACGGTGTTCT...CCTCTGCCACCCAGTAACCCTAGGCCAAGCCAAGCTGGCAGTCCTGGGGGCCAT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000094556.3 |
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| CDS TCA 90 bp | GCTTGTCTCTCCTGTTGGGATACTGTAGCACGTAGTCCGTACTGCTaGGTGTGTAGGCCCTGCCTCCCAGGTCAAAGGAAATGTCGGGGA | + |
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Preference number: 5 (lower is better) Translates to: ACLSCWDTVARSPYC*VCRPCLPGQRKCRG Trigger: TCCCCGACATTTCCTTTGACCTGGGAGGCAGGGCCTACACACTCAGCAGTACGGACTACGTGCTACAGTATCCCAACAGGAGAGACAAGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094556.3 |
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| CDS-3UTR CAA 90 bp | AGCCAGACAAAATGGCCCCCAGGACTGCCAGCTTGGCTTGGCCTAGGGTTACTGGTGTCAAAGATGACTTaGAAGGTCTGGGGTGGGGTA | + |
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Preference number: 5 (lower is better) Translates to: SQTKWPPGLPAWLGLGLLVSKMT*KVWGGV Trigger: TACCCCACCCCAGACCTTCAAAGTCATCTTTGACAC...CAGTAACCCTAGGCCAAGCCAAGCTGGCAGTCCTGGGGGCCATTTTGTCTGGCT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000094556.3 |
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| CDS-3UTR CAA 90 bp | GGACAAAGCCAGACAAAATGGCCCCCAGGACTGCCAGCTTGGCTTGGCCTAGGGGCGAATCCAATGCGATaGTTATGCCGATCAAACTCT | + |
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Preference number: 5 (lower is better) Translates to: GQSQTKWPPGLPAWLGLGANPMR*LCRSNS Trigger: AGAGTTTGATCGGCATAACAATCGCATTGGATTCGC...CCCTAGGCCAAGCCAAGCTGGCAGTCCTGGGGGCCATTTTGTCTGGCTTTGTCC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000094556.3 |
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| CDS TCA 72 bp | ATGTGGTCAAAGACAGGGGTAACCCCGCCAACGGCCTaGGCGGGAAAGCCCATGCCTAGAACACCGTCAAAC | + |
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Preference number: 6 (lower is better) Translates to: MWSKTGVTPPTA*AGKPMPRTPSN Trigger: GTTTGACGGTGTTCTAGGCATGGGCTTTCCCGCTCAGGCCGTTGGCGGGGTTACCCCTGTCTTTGACCACAT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000094556.3 |
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| CDS CAA 90 bp | TCCACTCCCCGCTCCTCCAGGATTTCCCGGACAGAAGGCATTTTCTaGAGCGGGATTCGTTCAAAGGTAGCGGTGCGTGTTGGGAGACTG | + |
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Preference number: 6 (lower is better) Translates to: STPRSSRISRTEGIF*SGIRSKVAVRVGRL Trigger: CAGTCTCCCAACACGCACCGCTACCTTTGAACGAATCCCGCTCAAGAAAATGCCTTCTGTCCGGGAAATCCTGGAGGAGCGGGGAGTGGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000094556.3 |
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| CDS TCA 72 bp | CACCGAGTCCTGGCTGAGGAAACCTTTGACTCTCCCTaGTCCGTAGTGGATGGTGAAGTCGGACCCGTTCTC | + |
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Preference number: 6 (lower is better) Translates to: HRVLAEETFDSP*SVVDGEVGPVL Trigger: GAGAACGGGTCCGACTTCACCATCCACTACGGATCAGGGAGAGTCAAAGGTTTCCTCAGCCAGGACTCGGTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094556.3 |
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| CDS TCA 72 bp | TCCTGTTGGGATACTGTAGCACGTAGTCCGTACTGCTaGGTGTGTAGGCCCTGCCTCCCAGGTCAAAGGAAA | + |
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Preference number: 6 (lower is better) Translates to: SCWDTVARSPYC*VCRPCLPGQRK Trigger: TTTCCTTTGACCTGGGAGGCAGGGCCTACACACTCAGCAGTACGGACTACGTGCTACAGTATCCCAACAGGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094556.3 |
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| CDS TCA 72 bp | TGTTATGCCGATCAAACTCTGTATAGAACTTGCGGATaGAGGTGGCACCCAGGACCCAGACAGGCCCAGTGG | + |
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Preference number: 6 (lower is better) Translates to: CYADQTLYRTCG*RWHPGPRQAQW Trigger: CCACTGGGCCTGTCTGGGTCCTGGGTGCCACCTTCATCCGCAAGTTCTATACAGAGTTTGATCGGCATAACA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094556.3 |
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| CDS CCA 72 bp | CCCTGCCTCCCAGGTCAAAGGAAATGTCGGGGAGGGTaGGCACCTGGCTACAGTTCACAACATATTCTTCTA | + |
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Preference number: 6 (lower is better) Translates to: PCLPGQRKCRGG*APGYSSQHILL Trigger: TAGAAGAATATGTTGTGAACTGTAGCCAGGTGCCCACCCTCCCCGACATTTCCTTTGACCTGGGAGGCAGGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094556.3 |
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| CDS CAA 72 bp | CGCTCCTCCAGGATTTCCCGGACAGAAGGCATTTTCTaGAGCGGGATTCGTTCAAAGGTAGCGGTGCGTGTT | + |
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Preference number: 6 (lower is better) Translates to: RSSRISRTEGIF*SGIRSKVAVRV Trigger: AACACGCACCGCTACCTTTGAACGAATCCCGCTCAAGAAAATGCCTTCTGTCCGGGAAATCCTGGAGGAGCG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094556.3 |
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| CDS GCA 72 bp | TATTCTTCTATTCTCTTCTCCTTGGCTCCCAGGGCTTaGATGATCAACTTCAGGGAGCTCGTAGGAGCCGAG | + |
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Preference number: 6 (lower is better) Translates to: YSSILFSLAPRA*MINFRELVGAE Trigger: CTCGGCTCCTACGAGCTCCCTGAAGTTGATCATGCAAGCCCTGGGAGCCAAGGAGAAGAGAATAGAAGAATA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094556.3 |
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| CDS CAA 72 bp | ATATTCTTCTATTCTCTTCTCCTTGGCTCCCAGGGCTaGCATGATCAACTTCAGGGAGCTCGTAGGAGCCGA | + |
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Preference number: 6 (lower is better) Translates to: IFFYSLLLGSQG*HDQLQGARRSR Trigger: TCGGCTCCTACGAGCTCCCTGAAGTTGATCATGCAAGCCCTGGGAGCCAAGGAGAAGAGAATAGAAGAATAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094556.3 |
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