Pregenerated sensors for REM1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000000359Ensembl transcript IDs: ENSMUST00000000369.4, ENSMUST00000150913.2
Found 81 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CTTTCGCCCGGCAGGAAGGGTTCCCAAAGCTCTGGTTCCTGGCGATaGTATTGCCATCCTGGCAATACGCAAGGTCGACCACGAGGACTC | + |
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Preference number: 1 (lower is better) Translates to: LSPGRKGSQSSGSWR*YCHPGNTQGRPRGL Trigger: GAGTCCTCGTGGTCGACCTTGCGTATTGCCAGGATGGCAATAGCATCGCCAGGAACCAGAGCTTTGGGAACCCTTCCTGCCGGGCGAAAG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000369.4 |
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| 3UTR CCA 90 bp | ATCTGGGCCAGCAGGCCAAGCCAGTCTACAGTCAAGTTAGATGTTTaGGGAGAGAGTGGAGATGCCTGGAAGAGCCCACGGAGAGACCTC | + |
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Preference number: 1 (lower is better) Translates to: IWASRPSQSTVKLDV*GESGDAWKSPRRDL Trigger: GAGGTCTCTCCGTGGGCTCTTCCAGGCATCTCCACTCTCTCCCCAAACATCTAACTTGACTGTAGACTGGCTTGGCCTGCTGGCCCAGAT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000369.4 |
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| 3UTR CCA 90 bp | CAGGCCAAGCCAGTCTACAGTCAAGTTAGATGTTTGGGGAGAGAGTaGAGATGCCTGGAAGAGCCCACGGAGAGACCTCCACACATCAGA | + |
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Preference number: 1 (lower is better) Translates to: QAKPVYSQVRCLGRE*RCLEEPTERPPHIR Trigger: TCTGATGTGTGGAGGTCTCTCCGTGGGCTCTTCCAGGCATCTCCACTCTCTCCCCAAACATCTAACTTGACTGTAGACTGGCTTGGCCTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000369.4 |
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| 3UTR CCA 90 bp | CAGTCTACAGTCAAGTTAGATGTTTGGGGAGAGAGTGGAGATGCCTaGAAGAGCCCACGGAGAGACCTCCACACATCAGACAGGACATCC | + |
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Preference number: 1 (lower is better) Translates to: QSTVKLDVWGESGDA*KSPRRDLHTSDRTS Trigger: GGATGTCCTGTCTGATGTGTGGAGGTCTCTCCGTGGGCTCTTCCAGGCATCTCCACTCTCTCCCCAAACATCTAACTTGACTGTAGACTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000369.4 |
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| 3UTR GCA 90 bp | AGCCCACGGAGAGACCTCCACACATCAGACAGGACATCCTGGACCTaGTTATTGTGGTACATTCTGAGAGTTGGTCATATCCCAGGGACA | + |
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Preference number: 1 (lower is better) Translates to: SPRRDLHTSDRTSWT*LLWYILRVGHIPGT Trigger: TGTCCCTGGGATATGACCAACTCTCAGAATGTACCACAATAAGCAGGTCCAGGATGTCCTGTCTGATGTGTGGAGGTCTCTCCGTGGGCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000369.4 |
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| 3UTR CCA 90 bp | TGGAAGAGCCCACGGAGAGACCTCCACACATCAGACAGGACATCCTaGACCTGCTTATTGTGGTACATTCTGAGAGTTGGTCATATCCCA | + |
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Preference number: 1 (lower is better) Translates to: WKSPRRDLHTSDRTS*TCLLWYILRVGHIP Trigger: TGGGATATGACCAACTCTCAGAATGTACCACAATAAGCAGGTCCAGGATGTCCTGTCTGATGTGTGGAGGTCTCTCCGTGGGCTCTTCCA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000369.4 |
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| 3UTR TCA 90 bp | ACACATCAGACAGGACATCCTGGACCTGCTTATTGTGGTACATTCTaGGAGTTGGTCATATCCCAGGGACAAGAAAGATTTGTTTTGTTT | + |
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Preference number: 1 (lower is better) Translates to: THQTGHPGPAYCGTF*ELVISQGQERFVLF Trigger: AAACAAAACAAATCTTTCTTGTCCCTGGGATATGACCAACTCTCAGAATGTACCACAATAAGCAGGTCCAGGATGTCCTGTCTGATGTGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000369.4 |
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| 3UTR CCA 90 bp | AGACAGGACATCCTGGACCTGCTTATTGTGGTACATTCTGAGAGTTaGTCATATCCCAGGGACAAGAAAGATTTGTTTTGTTTTGTTTTT | + |
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Preference number: 1 (lower is better) Translates to: RQDILDLLIVVHSES*SYPRDKKDLFCFVF Trigger: AAAAACAAAACAAAACAAATCTTTCTTGTCCCTGGGATATGACCAACTCTCAGAATGTACCACAATAAGCAGGTCCAGGATGTCCTGTCT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000000369.4 |
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| 3UTR CAA 90 bp | CATCTGGGCCAGCAGGCCAAGCCAGTCTACAGTCAAGTTAGATGTTaGGGGAGAGAGTGGAGATGCCTGGAAGAGCCCACGGAGAGACCT | + |
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Preference number: 2 (lower is better) Translates to: HLGQQAKPVYSQVRC*GREWRCLEEPTERP Trigger: AGGTCTCTCCGTGGGCTCTTCCAGGCATCTCCACTCTCTCCCCAAACATCTAACTTGACTGTAGACTGGCTTGGCCTGCTGGCCCAGATG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000369.4 |
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| 3UTR-3UTR CCA 90 bp | TGGGGAGAGAGTGGAGATGCCTGGAAGAGCCCACGGAGAGACCTCCACACATCAGGGTTCCCAAAGCTCTaGTTCCTGGCGATGCTATTG | + |
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Preference number: 2 (lower is better) Translates to: WGESGDAWKSPRRDLHTSGFPKL*FLAMLL Trigger: CAATAGCATCGCCAGGAACCAGAGCTTTGGGAACCC...TGATGTGTGGAGGTCTCTCCGTGGGCTCTTCCAGGCATCTCCACTCTCTCCCCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000369.4 |
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| 3UTR-3UTR CCA 90 bp | GAGAGTGGAGATGCCTGGAAGAGCCCACGGAGAGACCTCCACACATCAGACAGGACCTTGTGCCTAGCTTaGGTTTATAGCCCCATAGTC | + |
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Preference number: 2 (lower is better) Translates to: ESGDAWKSPRRDLHTSDRTLCLA*VYSPIV Trigger: GACTATGGGGCTATAAACCCAAGCTAGGCACAAGGT...CCTGTCTGATGTGTGGAGGTCTCTCCGTGGGCTCTTCCAGGCATCTCCACTCTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000369.4 |
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| 3UTR-3UTR GCA 90 bp | CATAGTCTGCCTATTCATCCTTTCGCCCGGCAGGAAGGGTTCCCAAAGCTCTGGTCCTGGCGATGCTATTaGCATCCTGGCAATACGCAA | + |
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Preference number: 2 (lower is better) Translates to: HSLPIHPFARQEGFPKLWSWRCY*HPGNTQ Trigger: TTGCGTATTGCCAGGATGGCAATAGCATCGCCAGGA...CCAGAGCTTTGGGAACCCTTCCTGCCGGGCGAAAGGATGAATAGGCAGACTATG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000369.4 |
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| 3UTR-3UTR CCA 90 bp | CATAGTCTGCCTATTCATCCTTTCGCCCGGCAGGAAGGGTTCCCAAAGCTCTGGACCTTTTCTCCTCAGTaGCACCATAGTGTCCCATCA | + |
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Preference number: 2 (lower is better) Translates to: HSLPIHPFARQEGFPKLWTFSPQ*HHSVPS Trigger: TGATGGGACACTATGGTGCCACTGAGGAGAAAAGGT...CCAGAGCTTTGGGAACCCTTCCTGCCGGGCGAAAGGATGAATAGGCAGACTATG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000369.4 |
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| 3UTR-3UTR CCA 90 bp | ACAGTCAAGTTAGATGTTTGGGGAGAGAGTGGAGATGCCTGGAAGAGCCCACGGTCAGACAGGACATCCTaGACCTGCTTATTGTGGTAC | + |
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Preference number: 2 (lower is better) Translates to: TVKLDVWGESGDAWKSPRSDRTS*TCLLWY Trigger: GTACCACAATAAGCAGGTCCAGGATGTCCTGTCTGA...CCGTGGGCTCTTCCAGGCATCTCCACTCTCTCCCCAAACATCTAACTTGACTGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000369.4 |
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| 3UTR-3UTR TCA 90 bp | ACAGTCAAGTTAGATGTTTGGGGAGAGAGTGGAGATGCCTGGAAGAGCCCACGGTATTGTGGTACATTCTaGGAGTTGGTCATATCCCAG | + |
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Preference number: 2 (lower is better) Translates to: TVKLDVWGESGDAWKSPRYCGTF*ELVISQ Trigger: CTGGGATATGACCAACTCTCAGAATGTACCACAATA...CCGTGGGCTCTTCCAGGCATCTCCACTCTCTCCCCAAACATCTAACTTGACTGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000369.4 |
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| 3UTR GCA 72 bp | GGCAGGAAGGGTTCCCAAAGCTCTGGTTCCTGGCGATaGTATTGCCATCCTGGCAATACGCAAGGTCGACCA | + |
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Preference number: 3 (lower is better) Translates to: GRKGSQSSGSWR*YCHPGNTQGRP Trigger: TGGTCGACCTTGCGTATTGCCAGGATGGCAATAGCATCGCCAGGAACCAGAGCTTTGGGAACCCTTCCTGCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000369.4 |
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| 3UTR CCA 72 bp | CCACGAGGACTCCAACAACGTACCTTTTCTCCTCAGTaGCACCATAGTGTCCCATCACCCCAGAGAGAGGCG | + |
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Preference number: 3 (lower is better) Translates to: PRGLQQRTFSPQ*HHSVPSPQREA Trigger: CGCCTCTCTCTGGGGTGATGGGACACTATGGTGCCACTGAGGAGAAAAGGTACGTTGTTGGAGTCCTCGTGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000000369.4 |
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| 3UTR CCA 72 bp | CATCCTTTCGCCCGGCAGGAAGGGTTCCCAAAGCTCTaGTTCCTGGCGATGCTATTGCCATCCTGGCAATAC | + |
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Preference number: 3 (lower is better) Translates to: HPFARQEGFPKL*FLAMLLPSWQY Trigger: GTATTGCCAGGATGGCAATAGCATCGCCAGGAACCAGAGCTTTGGGAACCCTTCCTGCCGGGCGAAAGGATG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000369.4 |
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| 3UTR GCA 72 bp | AAGGGTTCCCAAAGCTCTGGTTCCTGGCGATGCTATTaGCATCCTGGCAATACGCAAGGTCGACCACGAGGA | + |
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Preference number: 3 (lower is better) Translates to: KGSQSSGSWRCY*HPGNTQGRPRG Trigger: TCCTCGTGGTCGACCTTGCGTATTGCCAGGATGGCAATAGCATCGCCAGGAACCAGAGCTTTGGGAACCCTT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000369.4 |
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| 3UTR CCA 72 bp | AGCAGGCCAAGCCAGTCTACAGTCAAGTTAGATGTTTaGGGAGAGAGTGGAGATGCCTGGAAGAGCCCACGG | + |
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Preference number: 3 (lower is better) Translates to: SRPSQSTVKLDV*GESGDAWKSPR Trigger: CCGTGGGCTCTTCCAGGCATCTCCACTCTCTCCCCAAACATCTAACTTGACTGTAGACTGGCTTGGCCTGCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000369.4 |
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| 3UTR CCA 72 bp | GTCAAGTTAGATGTTTGGGGAGAGAGTGGAGATGCCTaGAAGAGCCCACGGAGAGACCTCCACACATCAGAC | + |
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Preference number: 3 (lower is better) Translates to: VKLDVWGESGDA*KSPRRDLHTSD Trigger: GTCTGATGTGTGGAGGTCTCTCCGTGGGCTCTTCCAGGCATCTCCACTCTCTCCCCAAACATCTAACTTGAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000369.4 |
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| 3UTR CCA 72 bp | CCACGGAGAGACCTCCACACATCAGACAGGACATCCTaGACCTGCTTATTGTGGTACATTCTGAGAGTTGGT | + |
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Preference number: 3 (lower is better) Translates to: PRRDLHTSDRTS*TCLLWYILRVG Trigger: ACCAACTCTCAGAATGTACCACAATAAGCAGGTCCAGGATGTCCTGTCTGATGTGTGGAGGTCTCTCCGTGG 51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000369.4 |
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| 3UTR CCA 72 bp | CACACATCAGACAGGACATCCTGGACCTGCTTATTGTaGTACATTCTGAGAGTTGGTCATATCCCAGGGACA | + |
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Preference number: 3 (lower is better) Translates to: HTSDRTSWTCLL*YILRVGHIPGT Trigger: TGTCCCTGGGATATGACCAACTCTCAGAATGTACCACAATAAGCAGGTCCAGGATGTCCTGTCTGATGTGTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000369.4 |
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| 3UTR CCA 72 bp | ATCCTGGACCTGCTTATTGTGGTACATTCTGAGAGTTaGTCATATCCCAGGGACAAGAAAGATTTGTTTTGT | + |
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Preference number: 3 (lower is better) Translates to: ILDLLIVVHSES*SYPRDKKDLFC Trigger: ACAAAACAAATCTTTCTTGTCCCTGGGATATGACCAACTCTCAGAATGTACCACAATAAGCAGGTCCAGGAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000369.4 |
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| CDS-3UTR CCA 90 bp | GTTTGGGGAGAGAGTGGAGATGCCTGGAAGAGCCCACGGAGAGACCTCCACACAAGGCGGCCAGGCTGGTaGCCCCTGGACGACAGGGGT | + |
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Preference number: 4 (lower is better) Translates to: VWGESGDAWKSPRRDLHTRRPGW*PLDDRG Trigger: ACCCCTGTCGTCCAGGGGCCACCAGCCTGGCCGCCT...TGTGTGGAGGTCTCTCCGTGGGCTCTTCCAGGCATCTCCACTCTCTCCCCAAAC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000000369.4 |
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| CDS-3UTR CCA 90 bp | GGCCAGCAGGCCAAGCCAGTCTACAGTCAAGTTAGATGTTTGGGGAGAGAGTGGCGGCGCAGGCGCAGTTaGCGCACCACGCCCTCGAAG | + |
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Preference number: 4 (lower is better) Translates to: GQQAKPVYSQVRCLGREWRRRRS*RTTPSK Trigger: CTTCGAGGGCGTGGTGCGCCAACTGCGCCTGCGCCG...CCACTCTCTCCCCAAACATCTAACTTGACTGTAGACTGGCTTGGCCTGCTGGCC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000369.4 |
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| CDS-3UTR TCA 90 bp | CTTTCGCCCGGCAGGAAGGGTTCCCAAAGCTCTGGTTCCTGGCGATGCTATTGCTGTTGCCCACCAGGATaGTGGGCACGTGGTTGGCCT | + |
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Preference number: 4 (lower is better) Translates to: LSPGRKGSQSSGSWRCYCCCPPG*WARGWP Trigger: AGGCCAACCACGTGCCCATCATCCTGGTGGGCAACA...GCAATAGCATCGCCAGGAACCAGAGCTTTGGGAACCCTTCCTGCCGGGCGAAAG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000369.4 |
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| CDS-3UTR CCA 90 bp | CCCAAAGCTCTGGTTCCTGGCGATGCTATTGCCATCCTGGCAATACGCAAGGTCCAGGCTGGTGGCCCCTaGACGACAGGGGTAGTGGTG | + |
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Preference number: 4 (lower is better) Translates to: PKALVPGDAIAILAIRKVQAGGP*TTGVVV Trigger: CACCACTACCCCTGTCGTCCAGGGGCCACCAGCCTG...GACCTTGCGTATTGCCAGGATGGCAATAGCATCGCCAGGAACCAGAGCTTTGGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000000369.4 |
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| CDS-3UTR CCA 90 bp | CATAGTCTGCCTATTCATCCTTTCGCCCGGCAGGAAGGGTTCCCAAAGCTCTGGGAGGACCACCCATCCTaGGCAGGGGAGGGTTTCCGG | + |
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Preference number: 4 (lower is better) Translates to: HSLPIHPFARQEGFPKLWEDHPS*AGEGFR Trigger: CCGGAAACCCTCCCCTGCCCAGGATGGGTGGTCCTC...CCAGAGCTTTGGGAACCCTTCCTGCCGGGCGAAAGGATGAATAGGCAGACTATG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000369.4 |
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| CDS-3UTR CCA 90 bp | CTTTCGCCCGGCAGGAAGGGTTCCCAAAGCTCTGGTTCCTGGCGATGCTATTGCAGCACAGCCAGGTTGTaGCAGGACTTGGAGCGGGCT | + |
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Preference number: 4 (lower is better) Translates to: LSPGRKGSQSSGSWRCYCSTARL*QDLERA Trigger: AGCCCGCTCCAAGTCCTGCCACAACCTGGCTGTGCT...GCAATAGCATCGCCAGGAACCAGAGCTTTGGGAACCCTTCCTGCCGGGCGAAAG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000369.4 |
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| CDS-3UTR GCA 90 bp | ACAGTCAAGTTAGATGTTTGGGGAGAGAGTGGAGATGCCTGGAAGAGCCCACGGGAGCAGAGGGTGCTGTaGACAGGCGGCCAGGCTGGT | + |
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Preference number: 4 (lower is better) Translates to: TVKLDVWGESGDAWKSPREQRVL*TGGQAG Trigger: ACCAGCCTGGCCGCCTGTGCACAGCACCCTCTGCTC...CCGTGGGCTCTTCCAGGCATCTCCACTCTCTCCCCAAACATCTAACTTGACTGT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000369.4 |
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| CDS-3UTR GCA 90 bp | GAGGACTCCAACAACGTACCTTTTCTCCTCAGTGGCACCATAGTGTCCCATCACGGAGCGGGCTTTAAGTaGCCGGCGTCGTGCGCTGCG | + |
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Preference number: 4 (lower is better) Translates to: EDSNNVPFLLSGTIVSHHGAGFK*PASCAA Trigger: CGCAGCGCACGACGCCGGGCACTTAAAGCCCGCTCC...GTGATGGGACACTATGGTGCCACTGAGGAGAAAAGGTACGTTGTTGGAGTCCTC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000369.4 |
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| CDS-3UTR CCA 90 bp | CTTTCGCCCGGCAGGAAGGGTTCCCAAAGCTCTGGTTCCTGGCGATGCTATTGCCTCGACGTCGCAGAGTaGTCTTTGCTTCCTGCTGGG | + |
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Preference number: 4 (lower is better) Translates to: LSPGRKGSQSSGSWRCYCLDVAE*SLLPAG Trigger: CCCAGCAGGAAGCAAAGACCACTCTGCGACGTCGAG...GCAATAGCATCGCCAGGAACCAGAGCTTTGGGAACCCTTCCTGCCGGGCGAAAG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000369.4 |
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| CDS-3UTR TCA 90 bp | CCCAAAGCTCTGGTTCCTGGCGATGCTATTGCCATCCTGGCAATACGCAAGGTCCCTCCCAGGTGTCCATaGCCACCAGAGTGGTGTCCT | + |
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Preference number: 4 (lower is better) Translates to: PKALVPGDAIAILAIRKVPPRCP*PPEWCP Trigger: AGGACACCACTCTGGTGGTCATGGACACCTGGGAGG...GACCTTGCGTATTGCCAGGATGGCAATAGCATCGCCAGGAACCAGAGCTTTGGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000369.4 |
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| CDS-3UTR TCA 90 bp | AGCCAGTCTACAGTCAAGTTAGATGTTTGGGGAGAGAGTGGAGATGCCTGGAAGGGCACGTGGTTGGCCTaGTGCGTGCGCCTCAGCTGG | + |
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Preference number: 4 (lower is better) Translates to: SQSTVKLDVWGESGDAWKGTWLA*CVRLSW Trigger: CCAGCTGAGGCGCACGCATCAGGCCAACCACGTGCC...CTTCCAGGCATCTCCACTCTCTCCCCAAACATCTAACTTGACTGTAGACTGGCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000369.4 |
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| CDS-3UTR TCA 90 bp | CATAGTCTGCCTATTCATCCTTTCGCCCGGCAGGAAGGGTTCCCAAAGCTCTGGTTGAGAGAGACTGACTaGCCCAGTCGGGGATGCTGG | + |
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Preference number: 4 (lower is better) Translates to: HSLPIHPFARQEGFPKLWLRETD*PSRGCW Trigger: CCAGCATCCCCGACTGGGTCAGTCAGTCTCTCTCAA...CCAGAGCTTTGGGAACCCTTCCTGCCGGGCGAAAGGATGAATAGGCAGACTATG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000369.4 |
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| CDS-3UTR GCA 90 bp | CTTTCGCCCGGCAGGAAGGGTTCCCAAAGCTCTGGTTCCTGGCGATGCTATTGCTCGGTCTTGTTTCTCTaGGAAGAGGCTAGCCAGGCT | + |
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Preference number: 4 (lower is better) Translates to: LSPGRKGSQSSGSWRCYCSVLFL*EEASQA Trigger: AGCCTGGCTAGCCTCTTCGCAGAGAAACAAGACCGA...GCAATAGCATCGCCAGGAACCAGAGCTTTGGGAACCCTTCCTGCCGGGCGAAAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000369.4 |
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| CDS-3UTR GCA 90 bp | GGGAGAGAGTGGAGATGCCTGGAAGAGCCCACGGAGAGACCTCCACACATCAGAAGCTCTGTCACATTGTaGTGCAGAGTGGCCGAAGTC | + |
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Preference number: 4 (lower is better) Translates to: GREWRCLEEPTERPPHIRSSVTL*CRVAEV Trigger: GACTTCGGCCACTCTGCAGCACAATGTGACAGAGCT...TCTGATGTGTGGAGGTCTCTCCGTGGGCTCTTCCAGGCATCTCCACTCTCTCCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000369.4 |
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| 3UTR CAA 72 bp | GAAGGGTTCCCAAAGCTCTGGTTCCTGGCGATGCTATaGCCATCCTGGCAATACGCAAGGTCGACCACGAGG | + |
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Preference number: 4 (lower is better) Translates to: EGFPKLWFLAML*PSWQYARSTTR Trigger: CCTCGTGGTCGACCTTGCGTATTGCCAGGATGGCAATAGCATCGCCAGGAACCAGAGCTTTGGGAACCCTTC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000369.4 |
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| CDS-3UTR GCA 90 bp | AGCCAGTCTACAGTCAAGTTAGATGTTTGGGGAGAGAGTGGAGATGCCTGGAAGGCGTCGTGCGCTGCGTaGTGTCAGACGTGCCAGGAA | + |
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Preference number: 4 (lower is better) Translates to: SQSTVKLDVWGESGDAWKASCAA*CQTCQE Trigger: TTCCTGGCACGTCTGACAGCACGCAGCGCACGACGC...CTTCCAGGCATCTCCACTCTCTCCCCAAACATCTAACTTGACTGTAGACTGGCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000369.4 |
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| 3UTR CAA 72 bp | CAGCAGGCCAAGCCAGTCTACAGTCAAGTTAGATGTTaGGGGAGAGAGTGGAGATGCCTGGAAGAGCCCACG | + |
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Preference number: 4 (lower is better) Translates to: QQAKPVYSQVRC*GREWRCLEEPT Trigger: CGTGGGCTCTTCCAGGCATCTCCACTCTCTCCCCAAACATCTAACTTGACTGTAGACTGGCTTGGCCTGCTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000369.4 |
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| CDS-3UTR TCA 90 bp | AGCCAGTCTACAGTCAAGTTAGATGTTTGGGGAGAGAGTGGAGATGCCTGGAAGAGGGTTGAGAGAGACTaGCTGACCCAGTCGGGGATG | + |
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Preference number: 4 (lower is better) Translates to: SQSTVKLDVWGESGDAWKRVERD*LTQSGM Trigger: CATCCCCGACTGGGTCAGTCAGTCTCTCTCAACCCT...CTTCCAGGCATCTCCACTCTCTCCCCAAACATCTAACTTGACTGTAGACTGGCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000000369.4 |
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| CDS-3UTR GCA 90 bp | ACAGTCAAGTTAGATGTTTGGGGAGAGAGTGGAGATGCCTGGAAGAGCCCACGGCGCTCTCAAAGCTGCTaGGATCCGCTATGGAGTACA | + |
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Preference number: 4 (lower is better) Translates to: TVKLDVWGESGDAWKSPRRSQSC*DPLWST Trigger: TGTACTCCATAGCGGATCGCAGCAGCTTTGAGAGCG...CCGTGGGCTCTTCCAGGCATCTCCACTCTCTCCCCAAACATCTAACTTGACTGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000369.4 |
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| CDS-3UTR CCA 90 bp | ACAGTCAAGTTAGATGTTTGGGGAGAGAGTGGAGATGCCTGGAAGAGCCCACGGTGCAGGCATGACTCCTaGCACCAGCTTTCATCCAGT | + |
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Preference number: 4 (lower is better) Translates to: TVKLDVWGESGDAWKSPRCRHDS*HQLSSS Trigger: ACTGGATGAAAGCTGGTGCCAGGAGTCATGCCTGCA...CCGTGGGCTCTTCCAGGCATCTCCACTCTCTCCCCAAACATCTAACTTGACTGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000369.4 |
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| CDS-3UTR TCA 90 bp | CGAGGACTCCAACAACGTACCTTTTCTCCTCAGTGGCACCATAGTGTCCCATCATGGCCGAAGTCTCGATaGACTTGCAGTCGAACACCA | + |
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Preference number: 4 (lower is better) Translates to: RGLQQRTFSPQWHHSVPSWPKSR*TCSRTP Trigger: TGGTGTTCGACTGCAAGTTCATCGAGACTTCGGCCA...TGATGGGACACTATGGTGCCACTGAGGAGAAAAGGTACGTTGTTGGAGTCCTCG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000369.4 |
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| CDS GCA 90 bp | GCGGGCTTTAAGTGCCCGGCGTCGTGCGCTGCGTGCTGTCAGACGTaGCAGGAATCGGCGGGCGCGCTGGCCCAAGCTGGCCCGTCGTCG | + |
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Preference number: 5 (lower is better) Translates to: AGFKCPASCAACCQT*QESAGALAQAGPSS Trigger: CGACGACGGGCCAGCTTGGGCCAGCGCGCCCGCCGATTCCTGGCACGTCTGACAGCACGCAGCGCACGACGCCGGGCACTTAAAGCCCGC 72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000369.4 |
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| CDS CCA 90 bp | CGTGCGCTGCGTGCTGTCAGACGTGCCAGGAATCGGCGGGCGCGCTaGCCCAAGCTGGCCCGTCGTCGAGGTGAAGGTGTCTCCGGGGCT | + |
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Preference number: 5 (lower is better) Translates to: RALRAVRRARNRRAR*PKLARRRGEGVSGA Trigger: AGCCCCGGAGACACCTTCACCTCGACGACGGGCCAGCTTGGGCCAGCGCGCCCGCCGATTCCTGGCACGTCTGACAGCACGCAGCGCACG 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000369.4 |
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| CDS GCA 90 bp | GCAGGACTTGGAGCGGGCTTTAAGTGCCCGGCGTCGTGCGCTGCGTaGTGTCAGACGTGCCAGGAATCGGCGGGCGCGCTGGCCCAAGCT | + |
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Preference number: 5 (lower is better) Translates to: AGLGAGFKCPASCAA*CQTCQESAGALAQA Trigger: AGCTTGGGCCAGCGCGCCCGCCGATTCCTGGCACGTCTGACAGCACGCAGCGCACGACGCCGGGCACTTAAAGCCCGCTCCAAGTCCTGC 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000369.4 |
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| CDS GCA 90 bp | CAGGTTGTGGCAGGACTTGGAGCGGGCTTTAAGTGCCCGGCGTCGTaGGCTGCGTGCTGTCAGACGTGCCAGGAATCGGCGGGCGCGCTG | + |
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Preference number: 5 (lower is better) Translates to: QVVAGLGAGFKCPAS*AACCQTCQESAGAL Trigger: CAGCGCGCCCGCCGATTCCTGGCACGTCTGACAGCACGCAGCGCACGACGCCGGGCACTTAAAGCCCGCTCCAAGTCCTGCCACAACCTG 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000369.4 |
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| CDS CCA 90 bp | GTGCTGTCAGACGTGCCAGGAATCGGCGGGCGCGCTGGCCCAAGCTaGCCCGTCGTCGAGGTGAAGGTGTCTCCGGGGCTGCATTGTCCT | + |
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Preference number: 5 (lower is better) Translates to: VLSDVPGIGGRAGPS*PVVEVKVSPGLHCP Trigger: AGGACAATGCAGCCCCGGAGACACCTTCACCTCGACGACGGGCCAGCTTGGGCCAGCGCGCCCGCCGATTCCTGGCACGTCTGACAGCAC 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000369.4 |
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| CDS CCA 90 bp | ATGGAGCAGAGGGTGCTGTGCACAGGCGGCCAGGCTGGTGGCCCCTaGACGACAGGGGTAGTGGTGTGCTTGCTCGACGTCGCAGAGTGG | + |
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Preference number: 5 (lower is better) Translates to: MEQRVLCTGGQAGGP*TTGVVVCLLDVAEW Trigger: CCACTCTGCGACGTCGAGCAAGCACACCACTACCCCTGTCGTCCAGGGGCCACCAGCCTGGCCGCCTGTGCACAGCACCCTCTGCTCCAT 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000000369.4 ENSMUST00000150913.2 |
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| CDS TCA 90 bp | AGGACCACCCATCCTGGGCAGGGGAGGGTTTCCGGACGGGAGGGTTaGGAGAGACTGACTGACCCAGTCGGGGATGCTGGGATGGAGCAG | + |
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Preference number: 5 (lower is better) Translates to: RTTHPGQGRVSGREG*ERLTDPVGDAGMEQ Trigger: CTGCTCCATCCCAGCATCCCCGACTGGGTCAGTCAGTCTCTCTCAACCCTCCCGTCCGGAAACCCTCCCCTGCCCAGGATGGGTGGTCCT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000000369.4 ENSMUST00000150913.2 |
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| CDS GCA 90 bp | ACAGGCGGCCAGGCTGGTGGCCCCTGGACGACAGGGGTAGTGGTGTaGTTGCTCGACGTCGCAGAGTGGTCTTTGCTTCCTGCTGGGTGT | + |
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Preference number: 5 (lower is better) Translates to: TGGQAGGPWTTGVVV*LLDVAEWSLLPAGC Trigger: ACACCCAGCAGGAAGCAAAGACCACTCTGCGACGTCGAGCAAGCACACCACTACCCCTGTCGTCCAGGGGCCACCAGCCTGGCCGCCTGT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000000369.4 ENSMUST00000150913.2 |
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| CDS GCA 90 bp | TCAGAGCACAGCCAGGTTGTGGCAGGACTTGGAGCGGGCTTTAAGTaGCCGGCGTCGTGCGCTGCGTGCTGTCAGACGTGCCAGGAATCG | + |
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Preference number: 5 (lower is better) Translates to: SEHSQVVAGLGAGFK*PASCAACCQTCQES Trigger: CGATTCCTGGCACGTCTGACAGCACGCAGCGCACGACGCCGGGCACTTAAAGCCCGCTCCAAGTCCTGCCACAACCTGGCTGTGCTCTGA 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000369.4 |
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| CDS CCA 90 bp | GAAGCACCACCCGGTAGAGTGCCTCCCAAGAGCCTTCGGAGTCGCTaGATTCAGAGGACCACCCATCCTGGGCAGGGGAGGGTTTCCGGA | + |
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Preference number: 5 (lower is better) Translates to: EAPPGRVPPKSLRSR*IQRTTHPGQGRVSG Trigger: TCCGGAAACCCTCCCCTGCCCAGGATGGGTGGTCCTCTGAATCCAGCGACTCCGAAGGCTCTTGGGAGGCACTCTACCGGGTGGTGCTTC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000369.4 |
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| CDS-3UTR CAA 90 bp | ACAGTCAAGTTAGATGTTTGGGGAGAGAGTGGAGATGCCTGGAAGAGCCCACGGGCGGCGCAGGCGCAGTaGGCGCACCACGCCCTCGAA | + |
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Preference number: 5 (lower is better) Translates to: TVKLDVWGESGDAWKSPRAAQAQ*AHHALE Trigger: TTCGAGGGCGTGGTGCGCCAACTGCGCCTGCGCCGC...CCGTGGGCTCTTCCAGGCATCTCCACTCTCTCCCCAAACATCTAACTTGACTGT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000369.4 |
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| CDS TCA 90 bp | CTCCCAGGTGTCCATGACCACCAGAGTGGTGTCCTCTCCGTCCACTaGCAGCGTTCTCTCGTACACACCTCCCAGCTGCTCGTGAGGGTC | + |
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Preference number: 5 (lower is better) Translates to: LPGVHDHQSGVLSVH*QRSLVHTSQLLVRV Trigger: GACCCTCACGAGCAGCTGGGAGGTGTGTACGAGAGAACGCTGTCAGTGGACGGAGAGGACACCACTCTGGTGGTCATGGACACCTGGGAG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000369.4 |
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| CDS TCA 90 bp | CCGTCCACTGACAGCGTTCTCTCGTACACACCTCCCAGCTGCTCGTaGGGGTCTCGGTCTTGTTTCTCTGCGAAGAGGCTAGCCAGGCTA | + |
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Preference number: 5 (lower is better) Translates to: PSTDSVLSYTPPSCS*GSRSCFSAKRLARL Trigger: TAGCCTGGCTAGCCTCTTCGCAGAGAAACAAGACCGAGACCCTCACGAGCAGCTGGGAGGTGTGTACGAGAGAACGCTGTCAGTGGACGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000369.4 |
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| CDS TCA 90 bp | CGCTATGGAGTACACGATGACGTAGGCGCTGCCTGCCTGCAGGCATaGCTCCTGGCACCAGCTTTCATCCAGTTTCTCAGCCTCCCAGGT | + |
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Preference number: 5 (lower is better) Translates to: RYGVHDDVGAACLQA*LLAPAFIQFLSLPG Trigger: ACCTGGGAGGCTGAGAAACTGGATGAAAGCTGGTGCCAGGAGTCATGCCTGCAGGCAGGCAGCGCCTACGTCATCGTGTACTCCATAGCG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000369.4 |
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| CDS TCA 90 bp | CGAAGAGCTCTGTCACATTGTGCTGCAGAGTGGCCGAAGTCTCGATaGACTTGCAGTCGAACACCACGGCGCAGGCGCGACCCTCTTCTA | + |
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Preference number: 5 (lower is better) Translates to: RRALSHCAAEWPKSR*TCSRTPRRRRDPLL Trigger: TAGAAGAGGGTCGCGCCTGCGCCGTGGTGTTCGACTGCAAGTTCATCGAGACTTCGGCCACTCTGCAGCACAATGTGACAGAGCTCTTCG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000369.4 |
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| CDS-3UTR CAA 90 bp | AGCCAGTCTACAGTCAAGTTAGATGTTTGGGGAGAGAGTGGAGATGCCTGGAAGCAGAGCACAGCCAGGTaGTGGCAGGACTTGGAGCGG | + |
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Preference number: 5 (lower is better) Translates to: SQSTVKLDVWGESGDAWKQSTAR*WQDLER Trigger: CCGCTCCAAGTCCTGCCACAACCTGGCTGTGCTCTG...CTTCCAGGCATCTCCACTCTCTCCCCAAACATCTAACTTGACTGTAGACTGGCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000369.4 |
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| CDS-3UTR CAA 90 bp | TGGGCCAGCAGGCCAAGCCAGTCTACAGTCAAGTTAGATGTTTGGGGAGAGAGTAAGAGCTCTGTCACATaGTGCTGCAGAGTGGCCGAA | + |
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Preference number: 5 (lower is better) Translates to: WASRPSQSTVKLDVWGESKSSVT*CCRVAE Trigger: TTCGGCCACTCTGCAGCACAATGTGACAGAGCTCTT...ACTCTCTCCCCAAACATCTAACTTGACTGTAGACTGGCTTGGCCTGCTGGCCCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000369.4 |
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| CDS-3UTR CAA 90 bp | AGCCAGTCTACAGTCAAGTTAGATGTTTGGGGAGAGAGTGGAGATGCCTGGAAGAGGTTGTGGCAGGACTaGGAGCGGGCTTTAAGTGCC | + |
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Preference number: 5 (lower is better) Translates to: SQSTVKLDVWGESGDAWKRLWQD*ERALSA Trigger: GGCACTTAAAGCCCGCTCCAAGTCCTGCCACAACCT...CTTCCAGGCATCTCCACTCTCTCCCCAAACATCTAACTTGACTGTAGACTGGCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000369.4 |
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| CDS TCA 72 bp | GCGGGCGCGCTGGCCCAAGCTGGCCCGTCGTCGAGGTaGAGGTGTCTCCGGGGCTGCATTGTCCTGGCGGCG | + |
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Preference number: 6 (lower is better) Translates to: AGALAQAGPSSR*RCLRGCIVLAA Trigger: CGCCGCCAGGACAATGCAGCCCCGGAGACACCTTCACCTCGACGACGGGCCAGCTTGGGCCAGCGCGCCCGC 74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000369.4 |
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| CDS GCA 72 bp | AAGTGCCCGGCGTCGTGCGCTGCGTGCTGTCAGACGTaGCAGGAATCGGCGGGCGCGCTGGCCCAAGCTGGC | + |
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Preference number: 6 (lower is better) Translates to: KCPASCAACCQT*QESAGALAQAG Trigger: GCCAGCTTGGGCCAGCGCGCCCGCCGATTCCTGGCACGTCTGACAGCACGCAGCGCACGACGCCGGGCACTT 72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000369.4 |
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| CDS CCA 72 bp | GACGTGCCAGGAATCGGCGGGCGCGCTGGCCCAAGCTaGCCCGTCGTCGAGGTGAAGGTGTCTCCGGGGCTG | + |
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Preference number: 6 (lower is better) Translates to: DVPGIGGRAGPS*PVVEVKVSPGL Trigger: CAGCCCCGGAGACACCTTCACCTCGACGACGGGCCAGCTTGGGCCAGCGCGCCCGCCGATTCCTGGCACGTC 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000369.4 |
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| CDS GCA 72 bp | GGAGCGGGCTTTAAGTGCCCGGCGTCGTGCGCTGCGTaGTGTCAGACGTGCCAGGAATCGGCGGGCGCGCTG | + |
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Preference number: 6 (lower is better) Translates to: GAGFKCPASCAA*CQTCQESAGAL Trigger: CAGCGCGCCCGCCGATTCCTGGCACGTCTGACAGCACGCAGCGCACGACGCCGGGCACTTAAAGCCCGCTCC 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000369.4 |
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| CDS CCA 72 bp | CGTGCTGTCAGACGTGCCAGGAATCGGCGGGCGCGCTaGCCCAAGCTGGCCCGTCGTCGAGGTGAAGGTGTC | + |
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Preference number: 6 (lower is better) Translates to: RAVRRARNRRAR*PKLARRRGEGV Trigger: GACACCTTCACCTCGACGACGGGCCAGCTTGGGCCAGCGCGCCCGCCGATTCCTGGCACGTCTGACAGCACG 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000369.4 |
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| CDS CCA 72 bp | GGAGCAGAGGGTGCTGTGCACAGGCGGCCAGGCTGGTaGCCCCTGGACGACAGGGGTAGTGGTGTGCTTGCT | + |
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Preference number: 6 (lower is better) Translates to: GAEGAVHRRPGW*PLDDRGSGVLA Trigger: AGCAAGCACACCACTACCCCTGTCGTCCAGGGGCCACCAGCCTGGCCGCCTGTGCACAGCACCCTCTGCTCC 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000000369.4 ENSMUST00000150913.2 |
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| CDS GCA 72 bp | GCAGGACTTGGAGCGGGCTTTAAGTGCCCGGCGTCGTaGGCTGCGTGCTGTCAGACGTGCCAGGAATCGGCG | + |
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Preference number: 6 (lower is better) Translates to: AGLGAGFKCPAS*AACCQTCQESA Trigger: CGCCGATTCCTGGCACGTCTGACAGCACGCAGCGCACGACGCCGGGCACTTAAAGCCCGCTCCAAGTCCTGC 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000369.4 |
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| CDS GCA 72 bp | AGCCAGGTTGTGGCAGGACTTGGAGCGGGCTTTAAGTaGCCGGCGTCGTGCGCTGCGTGCTGTCAGACGTGC | + |
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Preference number: 6 (lower is better) Translates to: SQVVAGLGAGFK*PASCAACCQTC Trigger: GCACGTCTGACAGCACGCAGCGCACGACGCCGGGCACTTAAAGCCCGCTCCAAGTCCTGCCACAACCTGGCT 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000369.4 |
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| CDS CCA 72 bp | CCCGGTAGAGTGCCTCCCAAGAGCCTTCGGAGTCGCTaGATTCAGAGGACCACCCATCCTGGGCAGGGGAGG | + |
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Preference number: 6 (lower is better) Translates to: PGRVPPKSLRSR*IQRTTHPGQGR Trigger: CCTCCCCTGCCCAGGATGGGTGGTCCTCTGAATCCAGCGACTCCGAAGGCTCTTGGGAGGCACTCTACCGGG 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000369.4 |
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| CDS TCA 72 bp | GAGGGTTTCCGGACGGGAGGGTTGAGAGAGACTGACTaGCCCAGTCGGGGATGCTGGGATGGAGCAGAGGGT | + |
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Preference number: 6 (lower is better) Translates to: EGFRTGGLRETD*PSRGCWDGAEG Trigger: ACCCTCTGCTCCATCCCAGCATCCCCGACTGGGTCAGTCAGTCTCTCTCAACCCTCCCGTCCGGAAACCCTC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000000369.4 ENSMUST00000150913.2 |
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| CDS GCA 72 bp | CAGGCTGGTGGCCCCTGGACGACAGGGGTAGTGGTGTaGTTGCTCGACGTCGCAGAGTGGTCTTTGCTTCCT | + |
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Preference number: 6 (lower is better) Translates to: QAGGPWTTGVVV*LLDVAEWSLLP Trigger: AGGAAGCAAAGACCACTCTGCGACGTCGAGCAAGCACACCACTACCCCTGTCGTCCAGGGGCCACCAGCCTG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000000369.4 ENSMUST00000150913.2 |
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| CDS CAA 72 bp | GCTGGTGGCCCCTGGACGACAGGGGTAGTGGTGTGCTaGCTCGACGTCGCAGAGTGGTCTTTGCTTCCTGCT | + |
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Preference number: 6 (lower is better) Translates to: AGGPWTTGVVVC*LDVAEWSLLPA Trigger: AGCAGGAAGCAAAGACCACTCTGCGACGTCGAGCAAGCACACCACTACCCCTGTCGTCCAGGGGCCACCAGC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000000369.4 ENSMUST00000150913.2 |
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| CDS TCA 72 bp | GTCCATGACCACCAGAGTGGTGTCCTCTCCGTCCACTaGCAGCGTTCTCTCGTACACACCTCCCAGCTGCTC | + |
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Preference number: 6 (lower is better) Translates to: VHDHQSGVLSVH*QRSLVHTSQLL Trigger: GAGCAGCTGGGAGGTGTGTACGAGAGAACGCTGTCAGTGGACGGAGAGGACACCACTCTGGTGGTCATGGAC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000369.4 |
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| CDS TCA 72 bp | CTGTCACATTGTGCTGCAGAGTGGCCGAAGTCTCGATaGACTTGCAGTCGAACACCACGGCGCAGGCGCGAC | + |
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Preference number: 6 (lower is better) Translates to: LSHCAAEWPKSR*TCSRTPRRRRD Trigger: GTCGCGCCTGCGCCGTGGTGTTCGACTGCAAGTTCATCGAGACTTCGGCCACTCTGCAGCACAATGTGACAG 60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000369.4 |
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| CDS TCA 72 bp | TCTCAAAGCTGCTGCGATCCGCTATGGAGTACACGATaGCGTAGGCGCTGCCTGCCTGCAGGCATGACTCCT | + |
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Preference number: 6 (lower is better) Translates to: SQSCCDPLWSTR*RRRCLPAGMTP Trigger: AGGAGTCATGCCTGCAGGCAGGCAGCGCCTACGTCATCGTGTACTCCATAGCGGATCGCAGCAGCTTTGAGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000369.4 |
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| CDS GCA 72 bp | AACACCAGGGTCTCCAAGAAGCACCACCCGGTAGAGTaGCTCCCAAGAGCCTTCGGAGTCGCTGGATTCAGA | + |
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Preference number: 6 (lower is better) Translates to: NTRVSKKHHPVE*LPRAFGVAGFR Trigger: TCTGAATCCAGCGACTCCGAAGGCTCTTGGGAGGCACTCTACCGGGTGGTGCTTCTTGGAGACCCTGGTGTT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000369.4 |
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| CDS GCA 72 bp | TCCCAGCTGCTCGTGAGGGTCTCGGTCTTGTTTCTCTaGGAAGAGGCTAGCCAGGCTAGTCTTCCCAACACC | + |
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Preference number: 6 (lower is better) Translates to: SQLLVRVSVLFL*EEASQASLPNT Trigger: GGTGTTGGGAAGACTAGCCTGGCTAGCCTCTTCGCAGAGAAACAAGACCGAGACCCTCACGAGCAGCTGGGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000369.4 |
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| CDS TCA 72 bp | GACAGCGTTCTCTCGTACACACCTCCCAGCTGCTCGTaGGGGTCTCGGTCTTGTTTCTCTGCGAAGAGGCTA | + |
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Preference number: 6 (lower is better) Translates to: DSVLSYTPPSCS*GSRSCFSAKRL Trigger: TAGCCTCTTCGCAGAGAAACAAGACCGAGACCCTCACGAGCAGCTGGGAGGTGTGTACGAGAGAACGCTGTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000369.4 |
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