Pregenerated sensors for RELL1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000047881Ensembl transcript IDs: ENSMUST00000087327.13, ENSMUST00000154169.4
Found 87 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GCACGTACGCGATGTATTCCGGGTGTCCATTCCCAGGGTTGTTGGTaGGTGACGATGGAGTGGTCTCTGCTCGGGAGTGTAACGTGTGGC | + |
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Preference number: 1 (lower is better) Translates to: ARTRCIPGVHSQGCW*VTMEWSLLGSVTCG Trigger: GCCACACGTTACACTCCCGAGCAGAGACCACTCCATCGTCACCCACCAACAACCCTGGGAATGGACACCCGGAATACATCGCGTACGTGC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087327.13 |
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| 3UTR TCA 90 bp | CCAGAGAATGACAGGGGGCAGGCTGACGGGAGCAGGAGTCAGTGCTaGATTCTTGTTGGTCCAGGAATCTTTAGTGCAGGGCGCCTGTGG | + |
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Preference number: 1 (lower is better) Translates to: PENDRGQADGSRSQC*ILVGPGIFSAGRLW Trigger: CCACAGGCGCCCTGCACTAAAGATTCCTGGACCAACAAGAATTCAGCACTGACTCCTGCTCCCGTCAGCCTGCCCCCTGTCATTCTCTGG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000087327.13 ENSMUST00000154169.4 |
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| 3UTR GCA 90 bp | CGCCGTGGCCGTCCCTCTTTGGTCTTGTTGGTGGGTTTTATGAAGTaGCATCGCTTGTGCCTGCATCGCTGGCACACATCCCGTTCAACG | + |
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Preference number: 1 (lower is better) Translates to: RRGRPSLVLLVGFMK*HRLCLHRWHTSRST Trigger: CGTTGAACGGGATGTGTGCCAGCGATGCAGGCACAAGCGATGGCACTTCATAAAACCCACCAACAAGACCAAAGAGGGACGGCCACGGCG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087327.13 |
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| 3UTR GCA 90 bp | ACTTCTGAGGGAGGAGGGAGGAGGAGGGACCCTAAACGCCAACTATaGTGGGAACCCTCAGGATTCTCACCAGGCTGTGCAAACCAGGAC | + |
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Preference number: 1 (lower is better) Translates to: TSEGGGRRRDPKRQL*WEPSGFSPGCANQD Trigger: GTCCTGGTTTGCACAGCCTGGTGAGAATCCTGAGGGTTCCCAGCATAGTTGGCGTTTAGGGTCCCTCCTCCTCCCTCCTCCCTCAGAAGT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000087327.13 ENSMUST00000154169.4 |
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| 3UTR TCA 90 bp | CTTGTCGCCGTGGCCGTCCCTCTTTGGTCTTGTTGGTGGGTTTTATaGAGTGCCATCGCTTGTGCCTGCATCGCTGGCACACATCCCGTT | + |
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Preference number: 1 (lower is better) Translates to: LVAVAVPLWSCWWVL*SAIACACIAGTHPV Trigger: AACGGGATGTGTGCCAGCGATGCAGGCACAAGCGATGGCACTTCATAAAACCCACCAACAAGACCAAAGAGGGACGGCCACGGCGACAAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087327.13 |
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| 3UTR CCA 90 bp | ATTCCGGGTGTCCATTCCCAGGGTTGTTGGTGGGTGACGATGGAGTaGTCTCTGCTCGGGAGTGTAACGTGTGGCTACCAGTGTTGTCTC | + |
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Preference number: 1 (lower is better) Translates to: IPGVHSQGCWWVTME*SLLGSVTCGYQCCL Trigger: GAGACAACACTGGTAGCCACACGTTACACTCCCGAGCAGAGACCACTCCATCGTCACCCACCAACAACCCTGGGAATGGACACCCGGAAT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087327.13 |
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| 3UTR CCA 90 bp | TCTGAGGGAGGAGGGAGGAGGAGGGACCCTAAACGCCAACTATGCTaGGAACCCTCAGGATTCTCACCAGGCTGTGCAAACCAGGACAAA | + |
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Preference number: 1 (lower is better) Translates to: SEGGGRRRDPKRQLC*EPSGFSPGCANQDK Trigger: TTTGTCCTGGTTTGCACAGCCTGGTGAGAATCCTGAGGGTTCCCAGCATAGTTGGCGTTTAGGGTCCCTCCTCCTCCCTCCTCCCTCAGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000087327.13 ENSMUST00000154169.4 |
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| 3UTR GCA 90 bp | TCGCAAGTTCGGAGTCTCTTAGAACTCTTCAAGAAAGCCAGCAGCTaGAGCTACTCCGTGTCACTCCGCTCCCTCTTCACAGGCGTCGCA | + |
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Preference number: 1 (lower is better) Translates to: SQVRSLLELFKKASS*SYSVSLRSLFTGVA Trigger: TGCGACGCCTGTGAAGAGGGAGCGGAGTGACACGGAGTAGCTGCAGCTGCTGGCTTTCTTGAAGAGTTCTAAGAGACTCCGAACTTGCGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087327.13 |
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| 3UTR CCA 90 bp | CTTAGCTGCACAAACATTACTCCCATGAGCACTCACTCTGCTTCCTaGACCACAGTGAACCTGGCATCCACACTGGCATCTCTGCTTAGT | + |
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Preference number: 1 (lower is better) Translates to: LSCTNITPMSTHSAS*TTVNLASTLASLLS Trigger: ACTAAGCAGAGATGCCAGTGTGGATGCCAGGTTCACTGTGGTCCAGGAAGCAGAGTGAGTGCTCATGGGAGTAATGTTTGTGCAGCTAAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000087327.13 ENSMUST00000154169.4 |
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| 3UTR TCA 90 bp | CTCAATGCCACTGACAGACATCAAACTTCTGCGCTCCTTCTGATTTaGCTTGTGCTCCACTTTCGTGACTCTGAACCTGCCCACAGAGAG | + |
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Preference number: 1 (lower is better) Translates to: LNATDRHQTSALLLI*LVLHFRDSEPAHRE Trigger: CTCTCTGTGGGCAGGTTCAGAGTCACGAAAGTGGAGCACAAGTCAAATCAGAAGGAGCGCAGAAGTTTGATGTCTGTCAGTGGCATTGAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087327.13 |
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| 3UTR CCA 90 bp | AAGATATCTGCATTCGCTTCATTTTTCATAATGTACTGGACAATCTaGCCGACCGTGTCACTGTTCTCATTTATACTGTCATTCAACTCT | + |
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Preference number: 1 (lower is better) Translates to: KISAFASFFIMYWTI*PTVSLFSFILSFNS Trigger: AGAGTTGAATGACAGTATAAATGAGAACAGTGACACGGTCGGCCAGATTGTCCAGTACATTATGAAAAATGAAGCGAATGCAGATATCTT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000087327.13 |
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| 3UTR CAA 90 bp | GGGACGAGCACGTACGCGATGTATTCCGGGTGTCCATTCCCAGGGTaGTTGGTGGGTGACGATGGAGTGGTCTCTGCTCGGGAGTGTAAC | + |
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Preference number: 2 (lower is better) Translates to: GTSTYAMYSGCPFPG*LVGDDGVVSARECN Trigger: GTTACACTCCCGAGCAGAGACCACTCCATCGTCACCCACCAACAACCCTGGGAATGGACACCCGGAATACATCGCGTACGTGCTCGTCCC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087327.13 |
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| 3UTR CAA 90 bp | ACGGTGACCTCGCCTTGTCGCCGTGGCCGTCCCTCTTTGGTCTTGTaGGTGGGTTTTATGAAGTGCCATCGCTTGTGCCTGCATCGCTGG | + |
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Preference number: 2 (lower is better) Translates to: TVTSPCRRGRPSLVL*VGFMKCHRLCLHRW Trigger: CCAGCGATGCAGGCACAAGCGATGGCACTTCATAAAACCCACCAACAAGACCAAAGAGGGACGGCCACGGCGACAAGGCGAGGTCACCGT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087327.13 |
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| 3UTR CAA 90 bp | AGGACGGTGACCTCGCCTTGTCGCCGTGGCCGTCCCTCTTTGGTCTaGTTGGTGGGTTTTATGAAGTGCCATCGCTTGTGCCTGCATCGC | + |
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Preference number: 2 (lower is better) Translates to: RTVTSPCRRGRPSLV*LVGFMKCHRLCLHR Trigger: GCGATGCAGGCACAAGCGATGGCACTTCATAAAACCCACCAACAAGACCAAAGAGGGACGGCCACGGCGACAAGGCGAGGTCACCGTCCT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087327.13 |
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| 3UTR CAA 90 bp | ACGAGCACGTACGCGATGTATTCCGGGTGTCCATTCCCAGGGTTGTaGGTGGGTGACGATGGAGTGGTCTCTGCTCGGGAGTGTAACGTG | + |
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Preference number: 2 (lower is better) Translates to: TSTYAMYSGCPFPGL*VGDDGVVSARECNV Trigger: CACGTTACACTCCCGAGCAGAGACCACTCCATCGTCACCCACCAACAACCCTGGGAATGGACACCCGGAATACATCGCGTACGTGCTCGT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087327.13 |
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| 3UTR CAA 90 bp | ACAGAGAGGACGGTGACCTCGCCTTGTCGCCGTGGCCGTCCCTCTTaGGTCTTGTTGGTGGGTTTTATGAAGTGCCATCGCTTGTGCCTG | + |
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Preference number: 2 (lower is better) Translates to: TERTVTSPCRRGRPS*VLLVGFMKCHRLCL Trigger: CAGGCACAAGCGATGGCACTTCATAAAACCCACCAACAAGACCAAAGAGGGACGGCCACGGCGACAAGGCGAGGTCACCGTCCTCTCTGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087327.13 |
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| 3UTR CAA 90 bp | GTGTCACTCCGCTCCCTCTTCACAGGCGTCGCAGGCACATCCCCGTaGACACTCTCAATGCCACTGACAGACATCAAACTTCTGCGCTCC | + |
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Preference number: 2 (lower is better) Translates to: VSLRSLFTGVAGTSP*TLSMPLTDIKLLRS Trigger: GGAGCGCAGAAGTTTGATGTCTGTCAGTGGCATTGAGAGTGTCAACGGGGATGTGCCTGCGACGCCTGTGAAGAGGGAGCGGAGTGACAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087327.13 |
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| 3UTR CAA 90 bp | ACAGGGGGCAGGCTGACGGGAGCAGGAGTCAGTGCTGAATTCTTGTaGGTCCAGGAATCTTTAGTGCAGGGCGCCTGTGGTTCCATTGGA | + |
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Preference number: 2 (lower is better) Translates to: TGGRLTGAGVSAEFL*VQESLVQGACGSIG Trigger: TCCAATGGAACCACAGGCGCCCTGCACTAAAGATTCCTGGACCAACAAGAATTCAGCACTGACTCCTGCTCCCGTCAGCCTGCCCCCTGT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000087327.13 ENSMUST00000154169.4 |
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| 3UTR-3UTR TCA 90 bp | AAAGCCAGCAGCTGCAGCTACTCCGTGTCACTCCGCTCCCTCTTCACAGGCGTCCACTCTCAATGCCACTaGCAGACATCAAACTTCTGC | + |
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Preference number: 2 (lower is better) Translates to: KASSCSYSVSLRSLFTGVHSQCH*QTSNFC Trigger: GCAGAAGTTTGATGTCTGTCAGTGGCATTGAGAGTG...GACGCCTGTGAAGAGGGAGCGGAGTGACACGGAGTAGCTGCAGCTGCTGGCTTT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087327.13 |
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| 3UTR-3UTR GCA 90 bp | TTCAGGAACAGATGTCAGCATGCCAACACAAGCTCAGGCTGGAAATGGCTCCTCGCCATCGCTTGTGCCTaGATCGCTGGCACACATCCC | + |
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Preference number: 2 (lower is better) Translates to: FRNRCQHANTSSGWKWLLAIACA*IAGTHP Trigger: GGGATGTGTGCCAGCGATGCAGGCACAAGCGATGGC...GAGGAGCCATTTCCAGCCTGAGCTTGTGTTGGCATGCTGACATCTGTTCCTGAA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087327.13 |
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| 3UTR-3UTR CCA 90 bp | GGGGGCAGGCTGACGGGAGCAGGAGTCAGTGCTGAATTCTTGTTGGTCCAGGAAAACACAAGCTCAGGCTaGAAATGGCTCCTCTGTTTG | + |
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Preference number: 2 (lower is better) Translates to: GGRLTGAGVSAEFLLVQENTSSG*KWLLCL Trigger: CAAACAGAGGAGCCATTTCCAGCCTGAGCTTGTGTT...TTCCTGGACCAACAAGAATTCAGCACTGACTCCTGCTCCCGTCAGCCTGCCCCC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000087327.13 ENSMUST00000154169.4 |
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| 3UTR-3UTR TCA 90 bp | TTCAGGAACAGATGTCAGCATGCCAACACAAGCTCAGGCTGGAAATGGCTCCTCCACCAAGGAGACCCATaGCGAAGAACACAGGGACGA | + |
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Preference number: 2 (lower is better) Translates to: FRNRCQHANTSSGWKWLLHQGDP*RRTQGR Trigger: TCGTCCCTGTGTTCTTCGTCATGGGTCTCCTTGGTG...GAGGAGCCATTTCCAGCCTGAGCTTGTGTTGGCATGCTGACATCTGTTCCTGAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087327.13 |
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| 3UTR-3UTR GCA 90 bp | ATCAGCTACAGCAGGATCCTGAGTAAAACAGCGGAAGTCTCAAGGGCGTGTTTGGGACAGCCAGGAATGTaGACCTGGGGACGGTTGTCT | + |
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Preference number: 2 (lower is better) Translates to: ISYSRILSKTAEVSRACLGQPGM*TWGRLS Trigger: AGACAACCGTCCCCAGGTGCACATTCCTGGCTGTCC...CAAACACGCCCTTGAGACTTCCGCTGTTTTACTCAGGATCCTGCTGTAGCTGAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000087327.13 ENSMUST00000154169.4 |
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| 3UTR-3UTR CCA 90 bp | ACAAGGCCAAGAGAGAGCCCTACCAGGCAAGAAGCCCCTAAGACTGGTAGAGCAGTGGCCGTCCCTCTTTaGTCTTGTTGGTGGGTTTTA | + |
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Preference number: 2 (lower is better) Translates to: TRPRESPTRQEAPKTGRAVAVPL*SCWWVL Trigger: TAAAACCCACCAACAAGACCAAAGAGGGACGGCCAC...TGCTCTACCAGTCTTAGGGGCTTCTTGCCTGGTAGGGCTCTCTCTTGGCCTTGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000087327.13 |
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| 3UTR-3UTR CCA 90 bp | GGGGGCAGGCTGACGGGAGCAGGAGTCAGTGCTGAATTCTTGTTGGTCCAGGAAAGCTCAGGCTGGAAATaGCTCCTCTGTTTGTTCATA | + |
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Preference number: 2 (lower is better) Translates to: GGRLTGAGVSAEFLLVQESSGWK*LLCLFI Trigger: TATGAACAAACAGAGGAGCCATTTCCAGCCTGAGCT...TTCCTGGACCAACAAGAATTCAGCACTGACTCCTGCTCCCGTCAGCCTGCCCCC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000087327.13 ENSMUST00000154169.4 |
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| 3UTR-3UTR GCA 90 bp | GCTGAATTCTTGTTGGTCCAGGAATCTTTAGTGCAGGGCGCCTGTGGTTCCATTTTCCAAGGGAGTAGCTaGCTGGGTATGGACAGCCAG | + |
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Preference number: 2 (lower is better) Translates to: AEFLLVQESLVQGACGSIFQGSS*LGMDSQ Trigger: CTGGCTGTCCATACCCAGGCAGCTACTCCCTTGGAA...AATGGAACCACAGGCGCCCTGCACTAAAGATTCCTGGACCAACAAGAATTCAGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000087327.13 ENSMUST00000154169.4 |
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| 3UTR-3UTR GCA 90 bp | TGCACAAACATTACTCCCATGAGCACTCACTCTGCTTCCTGGACCACAGTGAACGAACAGATGTCAGCATaGCAACACAAGCTCAGGCTG | + |
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Preference number: 2 (lower is better) Translates to: CTNITPMSTHSASWTTVNEQMSA*QHKLRL Trigger: CAGCCTGAGCTTGTGTTGGCATGCTGACATCTGTTC...GTTCACTGTGGTCCAGGAAGCAGAGTGAGTGCTCATGGGAGTAATGTTTGTGCA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000087327.13 ENSMUST00000154169.4 |
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| 3UTR-3UTR CCA 90 bp | CTTTCAAAGCAAGCTGAATTCTGTGTCCAGCGTAGCAAAAATATGCCCTTTTGGTGGGTGACGATGGAGTaGTCTCTGCTCGGGAGTGTA | + |
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Preference number: 2 (lower is better) Translates to: LSKQAEFCVQRSKNMPFWWVTME*SLLGSV Trigger: TACACTCCCGAGCAGAGACCACTCCATCGTCACCCA...CCAAAAGGGCATATTTTTGCTACGCTGGACACAGAATTCAGCTTGCTTTGAAAG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000087327.13 |
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| 3UTR-3UTR CCA 90 bp | TTGTTGGTGGGTTTTATGAAGTGCCATCGCTTGTGCCTGCATCGCTGGCACACATTTTTCATAATGTACTaGACAATCTGGCCGACCGTG | + |
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Preference number: 2 (lower is better) Translates to: LLVGFMKCHRLCLHRWHTFFIMY*TIWPTV Trigger: CACGGTCGGCCAGATTGTCCAGTACATTATGAAAAA...TGTGTGCCAGCGATGCAGGCACAAGCGATGGCACTTCATAAAACCCACCAACAA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000087327.13 |
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| 3UTR-3UTR TCA 90 bp | ATCAGCTACAGCAGGATCCTGAGTAAAACAGCGGAAGTCTCAAGGGCGTGTTTGTTCTTCTTAAGTAAGTaGCAGATGAGGACACCAAGG | + |
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Preference number: 2 (lower is better) Translates to: ISYSRILSKTAEVSRACLFFLSK*QMRTPR Trigger: CCTTGGTGTCCTCATCTGTCACTTACTTAAGAAGAA...CAAACACGCCCTTGAGACTTCCGCTGTTTTACTCAGGATCCTGCTGTAGCTGAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087327.13 |
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| 3UTR-3UTR GCA 90 bp | AAAATATTCCCTAGGCGACTTCATTATCTCGCAAGTTCGGAGTCTCTTAGAACTAAGAAAGCCAGCAGCTaGAGCTACTCCGTGTCACTC | + |
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Preference number: 2 (lower is better) Translates to: KIFPRRLHYLASSESLRTKKASS*SYSVSL Trigger: GAGTGACACGGAGTAGCTGCAGCTGCTGGCTTTCTT...AGTTCTAAGAGACTCCGAACTTGCGAGATAATGAAGTCGCCTAGGGAATATTTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087327.13 |
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| 3UTR-3UTR GCA 90 bp | AAAATATTCCCTAGGCGACTTCATTATCTCGCAAGTTCGGAGTCTCTTAGAACTGTGGGTTTTATGAAGTaGCATCGCTTGTGCCTGCAT | + |
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Preference number: 2 (lower is better) Translates to: KIFPRRLHYLASSESLRTVGFMK*HRLCLH Trigger: ATGCAGGCACAAGCGATGGCACTTCATAAAACCCAC...AGTTCTAAGAGACTCCGAACTTGCGAGATAATGAAGTCGCCTAGGGAATATTTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000087327.13 |
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| 3UTR CCA 72 bp | GCCCACAGAGAGGACGGTGACCTCGCCTTGTCGCCGTaGCCGTCCCTCTTTGGTCTTGTTGGTGGGTTTTAT | + |
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Preference number: 3 (lower is better) Translates to: AHREDGDLALSP*PSLFGLVGGFY Trigger: ATAAAACCCACCAACAAGACCAAAGAGGGACGGCCACGGCGACAAGGCGAGGTCACCGTCCTCTCTGTGGGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087327.13 |
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| 3UTR-3UTR CAA 90 bp | GCTGAATTCTTGTTGGTCCAGGAATCTTTAGTGCAGGGCGCCTGTGGTTCCATTGACGGTGACCTCGCCTaGTCGCCGTGGCCGTCCCTC | + |
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Preference number: 3 (lower is better) Translates to: AEFLLVQESLVQGACGSIDGDLA*SPWPSL Trigger: GAGGGACGGCCACGGCGACAAGGCGAGGTCACCGTC...AATGGAACCACAGGCGCCCTGCACTAAAGATTCCTGGACCAACAAGAATTCAGC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087327.13 |
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| 3UTR CCA 72 bp | GTCCATTCCCAGGGTTGTTGGTGGGTGACGATGGAGTaGTCTCTGCTCGGGAGTGTAACGTGTGGCTACCAG | + |
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Preference number: 3 (lower is better) Translates to: VHSQGCWWVTME*SLLGSVTCGYQ Trigger: CTGGTAGCCACACGTTACACTCCCGAGCAGAGACCACTCCATCGTCACCCACCAACAACCCTGGGAATGGAC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087327.13 |
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| 3UTR CCA 72 bp | GGAGGGAGGAGGAGGGACCCTAAACGCCAACTATGCTaGGAACCCTCAGGATTCTCACCAGGCTGTGCAAAC | + |
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Preference number: 3 (lower is better) Translates to: GGRRRDPKRQLC*EPSGFSPGCAN Trigger: GTTTGCACAGCCTGGTGAGAATCCTGAGGGTTCCCAGCATAGTTGGCGTTTAGGGTCCCTCCTCCTCCCTCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000087327.13 ENSMUST00000154169.4 |
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| 3UTR TCA 72 bp | GACAGGGGGCAGGCTGACGGGAGCAGGAGTCAGTGCTaGATTCTTGTTGGTCCAGGAATCTTTAGTGCAGGG | + |
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Preference number: 3 (lower is better) Translates to: DRGQADGSRSQC*ILVGPGIFSAG Trigger: CCCTGCACTAAAGATTCCTGGACCAACAAGAATTCAGCACTGACTCCTGCTCCCGTCAGCCTGCCCCCTGTC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000087327.13 ENSMUST00000154169.4 |
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| 3UTR CCA 72 bp | CGATGTATTCCGGGTGTCCATTCCCAGGGTTGTTGGTaGGTGACGATGGAGTGGTCTCTGCTCGGGAGTGTA | + |
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Preference number: 3 (lower is better) Translates to: RCIPGVHSQGCW*VTMEWSLLGSV Trigger: TACACTCCCGAGCAGAGACCACTCCATCGTCACCCACCAACAACCCTGGGAATGGACACCCGGAATACATCG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087327.13 |
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| 3UTR CCA 72 bp | GGTTTTATGAAGTGCCATCGCTTGTGCCTGCATCGCTaGCACACATCCCGTTCAACGACACCTCCCACTGTG | + |
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Preference number: 3 (lower is better) Translates to: GFMKCHRLCLHR*HTSRSTTPPTV Trigger: CACAGTGGGAGGTGTCGTTGAACGGGATGTGTGCCAGCGATGCAGGCACAAGCGATGGCACTTCATAAAACC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087327.13 |
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| 3UTR GCA 72 bp | CGTCCCTCTTTGGTCTTGTTGGTGGGTTTTATGAAGTaGCATCGCTTGTGCCTGCATCGCTGGCACACATCC | + |
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Preference number: 3 (lower is better) Translates to: RPSLVLLVGFMK*HRLCLHRWHTS Trigger: GGATGTGTGCCAGCGATGCAGGCACAAGCGATGGCACTTCATAAAACCCACCAACAAGACCAAAGAGGGACG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087327.13 |
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| 3UTR GCA 72 bp | CGGAGTCTCTTAGAACTCTTCAAGAAAGCCAGCAGCTaGAGCTACTCCGTGTCACTCCGCTCCCTCTTCACA | + |
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Preference number: 3 (lower is better) Translates to: RSLLELFKKASS*SYSVSLRSLFT Trigger: TGTGAAGAGGGAGCGGAGTGACACGGAGTAGCTGCAGCTGCTGGCTTTCTTGAAGAGTTCTAAGAGACTCCG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087327.13 |
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| 3UTR-3UTR CAA 90 bp | ACCAAGTCACTAGCTGCCAGTGTGGGTTCACATCAAACTGCATCTACCACACGCCGTGGCCGTCCCTCTTaGGTCTTGTTGGTGGGTTTT | + |
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Preference number: 3 (lower is better) Translates to: TKSLAASVGSHQTASTTRRGRPS*VLLVGF Trigger: AAAACCCACCAACAAGACCAAAGAGGGACGGCCACG...GCGTGTGGTAGATGCAGTTTGATGTGAACCCACACTGGCAGCTAGTGACTTGGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087327.13 |
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| 3UTR GCA 72 bp | GTCTTGTTGGTGGGTTTTATGAAGTGCCATCGCTTGTaGCTGCATCGCTGGCACACATCCCGTTCAACGACA | + |
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Preference number: 3 (lower is better) Translates to: VLLVGFMKCHRL*LHRWHTSRSTT Trigger: TGTCGTTGAACGGGATGTGTGCCAGCGATGCAGGCACAAGCGATGGCACTTCATAAAACCCACCAACAAGAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087327.13 |
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| 3UTR-3UTR CAA 90 bp | TTCAGGAACAGATGTCAGCATGCCAACACAAGCTCAGGCTGGAAATGGCTCCTCTGCGCTCCTTCTGATTaGACTTGTGCTCCACTTTCG | + |
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Preference number: 3 (lower is better) Translates to: FRNRCQHANTSSGWKWLLCAPSD*TCAPLS Trigger: CGAAAGTGGAGCACAAGTCAAATCAGAAGGAGCGCA...GAGGAGCCATTTCCAGCCTGAGCTTGTGTTGGCATGCTGACATCTGTTCCTGAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087327.13 |
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| 3UTR GCA 72 bp | AACATGGAATCTGGGGTTCAGGAACAGATGTCAGCATaGCAACACAAGCTCAGGCTGGAAATGGCTCCTCTG | + |
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Preference number: 3 (lower is better) Translates to: NMESGVQEQMSA*QHKLRLEMAPL Trigger: CAGAGGAGCCATTTCCAGCCTGAGCTTGTGTTGGCATGCTGACATCTGTTCCTGAACCCCAGATTCCATGTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000087327.13 ENSMUST00000154169.4 |
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| 3UTR CCA 72 bp | ACAAACATTACTCCCATGAGCACTCACTCTGCTTCCTaGACCACAGTGAACCTGGCATCCACACTGGCATCT | + |
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Preference number: 3 (lower is better) Translates to: TNITPMSTHSAS*TTVNLASTLAS Trigger: AGATGCCAGTGTGGATGCCAGGTTCACTGTGGTCCAGGAAGCAGAGTGAGTGCTCATGGGAGTAATGTTTGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000087327.13 ENSMUST00000154169.4 |
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| 3UTR-3UTR CAA 90 bp | TTCAGGAACAGATGTCAGCATGCCAACACAAGCTCAGGCTGGAAATGGCTCCTCCCCTCTTTGGTCTTGTaGGTGGGTTTTATGAAGTGC | + |
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Preference number: 3 (lower is better) Translates to: FRNRCQHANTSSGWKWLLPSLVL*VGFMKC Trigger: GCACTTCATAAAACCCACCAACAAGACCAAAGAGGG...GAGGAGCCATTTCCAGCCTGAGCTTGTGTTGGCATGCTGACATCTGTTCCTGAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000087327.13 |
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| 3UTR TCA 72 bp | ACTGACAGACATCAAACTTCTGCGCTCCTTCTGATTTaGCTTGTGCTCCACTTTCGTGACTCTGAACCTGCC | + |
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Preference number: 3 (lower is better) Translates to: TDRHQTSALLLI*LVLHFRDSEPA Trigger: GGCAGGTTCAGAGTCACGAAAGTGGAGCACAAGTCAAATCAGAAGGAGCGCAGAAGTTTGATGTCTGTCAGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087327.13 |
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| 3UTR-3UTR CAA 90 bp | ATCAGCTACAGCAGGATCCTGAGTAAAACAGCGGAAGTCTCAAGGGCGTGTTTGGTCAGTGCTGAATTCTaGTTGGTCCAGGAATCTTTA | + |
|
Preference number: 3 (lower is better) Translates to: ISYSRILSKTAEVSRACLVSAEF*LVQESL Trigger: TAAAGATTCCTGGACCAACAAGAATTCAGCACTGAC...CAAACACGCCCTTGAGACTTCCGCTGTTTTACTCAGGATCCTGCTGTAGCTGAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000087327.13 ENSMUST00000154169.4 |
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| 3UTR GCA 72 bp | ACTATGCTGGGAACCCTCAGGATTCTCACCAGGCTGTaGAAACCAGGACAAAGCTTATGTGTTGAATGTATT | + |
|
Preference number: 3 (lower is better) Translates to: TMLGTLRILTRL*KPGQSLCVECI Trigger: AATACATTCAACACATAAGCTTTGTCCTGGTTTGCACAGCCTGGTGAGAATCCTGAGGGTTCCCAGCATAGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000087327.13 ENSMUST00000154169.4 |
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| 3UTR CCA 72 bp | ACTGTGTGTATTAAGATCTTAGGGCCAAAGTCAACATaGAATCTGGGGTTCAGGAACAGATGTCAGCATGCC | + |
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Preference number: 3 (lower is better) Translates to: TVCIKILGPKST*NLGFRNRCQHA Trigger: GGCATGCTGACATCTGTTCCTGAACCCCAGATTCCATGTTGACTTTGGCCCTAAGATCTTAATACACACAGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000087327.13 ENSMUST00000154169.4 |
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| 3UTR CCA 72 bp | CCTAACGATTACTCAACAATCGAAGACTTAAGAAGCTaGTCCTGTAAGATGTCGCTCATTCAAGCACACTGG | + |
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Preference number: 3 (lower is better) Translates to: PNDYSTIEDLRS*SCKMSLIQAHW Trigger: CCAGTGTGCTTGAATGAGCGACATCTTACAGGACCAGCTTCTTAAGTCTTCGATTGTTGAGTAATCGTTAGG 44% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000154169.4 |
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| 3UTR CCA 72 bp | AAGATATCTGCATTCGCTTCATTTTTCATAATGTACTaGACAATCTGGCCGACCGTGTCACTGTTCTCATTT | + |
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Preference number: 3 (lower is better) Translates to: KISAFASFFIMY*TIWPTVSLFSF Trigger: AAATGAGAACAGTGACACGGTCGGCCAGATTGTCCAGTACATTATGAAAAATGAAGCGAATGCAGATATCTT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000087327.13 |
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| 3UTR TCA 72 bp | CTTTACAAAATGTTTTACATCAAGATGGCAACCGAGTaGCTCTTTCCTTTACACCAAGAAGCGATCCATCAT | + |
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Preference number: 3 (lower is better) Translates to: LYKMFYIKMATE*LFPLHQEAIHH Trigger: ATGATGGATCGCTTCTTGGTGTAAAGGAAAGAGTCACTCGGTTGCCATCTTGATGTAAAACATTTTGTAAAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000087327.13 ENSMUST00000154169.4 |
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| 3UTR CAA 72 bp | TACGCGATGTATTCCGGGTGTCCATTCCCAGGGTTGTaGGTGGGTGACGATGGAGTGGTCTCTGCTCGGGAG | + |
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Preference number: 4 (lower is better) Translates to: YAMYSGCPFPGL*VGDDGVVSARE Trigger: CTCCCGAGCAGAGACCACTCCATCGTCACCCACCAACAACCCTGGGAATGGACACCCGGAATACATCGCGTA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087327.13 |
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| 3UTR CAA 72 bp | ACGTACGCGATGTATTCCGGGTGTCCATTCCCAGGGTaGTTGGTGGGTGACGATGGAGTGGTCTCTGCTCGG | + |
|
Preference number: 4 (lower is better) Translates to: TYAMYSGCPFPG*LVGDDGVVSAR Trigger: CCGAGCAGAGACCACTCCATCGTCACCCACCAACAACCCTGGGAATGGACACCCGGAATACATCGCGTACGT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087327.13 |
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| 3UTR CAA 72 bp | ACGGTGACCTCGCCTTGTCGCCGTGGCCGTCCCTCTTaGGTCTTGTTGGTGGGTTTTATGAAGTGCCATCGC | + |
|
Preference number: 4 (lower is better) Translates to: TVTSPCRRGRPS*VLLVGFMKCHR Trigger: GCGATGGCACTTCATAAAACCCACCAACAAGACCAAAGAGGGACGGCCACGGCGACAAGGCGAGGTCACCGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087327.13 |
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| CDS-3UTR TCA 90 bp | AGGGACGAGCACGTACGCGATGTATTCCGGGTGTCCATTCCCAGGGTTGTTGGTCGCCCCTTCTCTGGCTaGAGAACCTCTTGTGCAAGT | + |
|
Preference number: 4 (lower is better) Translates to: RDEHVRDVFRVSIPRVVGRPFSG*RTSCAS Trigger: ACTTGCACAAGAGGTTCTTCAGCCAGAGAAGGGGCG...ACCAACAACCCTGGGAATGGACACCCGGAATACATCGCGTACGTGCTCGTCCCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087327.13 |
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| CDS-3UTR GCA 90 bp | CTGGGGTTCAGGAACAGATGTCAGCATGCCAACACAAGCTCAGGCTGGAAATGGGCCATCGCTTGTGCCTaGATCGCTGGCACACATCCC | + |
|
Preference number: 4 (lower is better) Translates to: LGFRNRCQHANTSSGWKWAIACA*IAGTHP Trigger: GGGATGTGTGCCAGCGATGCAGGCACAAGCGATGGC...CCATTTCCAGCCTGAGCTTGTGTTGGCATGCTGACATCTGTTCCTGAACCCCAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000154169.4 |
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| 3UTR CAA 72 bp | TCGCCTTGTCGCCGTGGCCGTCCCTCTTTGGTCTTGTaGGTGGGTTTTATGAAGTGCCATCGCTTGTGCCTG | + |
|
Preference number: 4 (lower is better) Translates to: SPCRRGRPSLVL*VGFMKCHRLCL Trigger: CAGGCACAAGCGATGGCACTTCATAAAACCCACCAACAAGACCAAAGAGGGACGGCCACGGCGACAAGGCGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087327.13 |
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| 3UTR CAA 72 bp | ACCTCGCCTTGTCGCCGTGGCCGTCCCTCTTTGGTCTaGTTGGTGGGTTTTATGAAGTGCCATCGCTTGTGC | + |
|
Preference number: 4 (lower is better) Translates to: TSPCRRGRPSLV*LVGFMKCHRLC Trigger: GCACAAGCGATGGCACTTCATAAAACCCACCAACAAGACCAAAGAGGGACGGCCACGGCGACAAGGCGAGGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087327.13 |
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| CDS-3UTR CCA 90 bp | ACAAGGCCAAGAGAGAGCCCTACCAGGCAAGAAGCCCCTAAGACTGGTAGAGCATGGGTGACGATGGAGTaGTCTCTGCTCGGGAGTGTA | + |
|
Preference number: 4 (lower is better) Translates to: TRPRESPTRQEAPKTGRAWVTME*SLLGSV Trigger: TACACTCCCGAGCAGAGACCACTCCATCGTCACCCA...TGCTCTACCAGTCTTAGGGGCTTCTTGCCTGGTAGGGCTCTCTCTTGGCCTTGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000154169.4 |
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| 3UTR CAA 72 bp | CGCTCCCTCTTCACAGGCGTCGCAGGCACATCCCCGTaGACACTCTCAATGCCACTGACAGACATCAAACTT | + |
|
Preference number: 4 (lower is better) Translates to: RSLFTGVAGTSP*TLSMPLTDIKL Trigger: AAGTTTGATGTCTGTCAGTGGCATTGAGAGTGTCAACGGGGATGTGCCTGCGACGCCTGTGAAGAGGGAGCG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087327.13 |
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| 3UTR CAA 72 bp | AGGCTGACGGGAGCAGGAGTCAGTGCTGAATTCTTGTaGGTCCAGGAATCTTTAGTGCAGGGCGCCTGTGGT | + |
|
Preference number: 4 (lower is better) Translates to: RLTGAGVSAEFL*VQESLVQGACG Trigger: ACCACAGGCGCCCTGCACTAAAGATTCCTGGACCAACAAGAATTCAGCACTGACTCCTGCTCCCGTCAGCCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000087327.13 ENSMUST00000154169.4 |
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| CDS-3UTR GCA 90 bp | GGGGGCAGGCTGACGGGAGCAGGAGTCAGTGCTGAATTCTTGTTGGTCCAGGAAGTGGGTTTTATGAAGTaGCATCGCTTGTGCCTGCAT | + |
|
Preference number: 4 (lower is better) Translates to: GGRLTGAGVSAEFLLVQEVGFMK*HRLCLH Trigger: ATGCAGGCACAAGCGATGGCACTTCATAAAACCCAC...TTCCTGGACCAACAAGAATTCAGCACTGACTCCTGCTCCCGTCAGCCTGCCCCC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000154169.4 |
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| 3UTR CAA 72 bp | TTGGTCTTGTTGGTGGGTTTTATGAAGTGCCATCGCTaGTGCCTGCATCGCTGGCACACATCCCGTTCAACG | + |
|
Preference number: 4 (lower is better) Translates to: LVLLVGFMKCHR*CLHRWHTSRST Trigger: CGTTGAACGGGATGTGTGCCAGCGATGCAGGCACAAGCGATGGCACTTCATAAAACCCACCAACAAGACCAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087327.13 |
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| CDS-3UTR TCA 90 bp | CTGGGGTTCAGGAACAGATGTCAGCATGCCAACACAAGCTCAGGCTGGAAATGGCTTCTGCGCTCCTTCTaGTTTGACTTGTGCTCCACT | + |
|
Preference number: 4 (lower is better) Translates to: LGFRNRCQHANTSSGWKWLLRSF*FDLCST Trigger: AGTGGAGCACAAGTCAAATCAGAAGGAGCGCAGAAG...CCATTTCCAGCCTGAGCTTGTGTTGGCATGCTGACATCTGTTCCTGAACCCCAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000154169.4 |
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| CDS-3UTR GCA 90 bp | ACAGATGTCAGCATGCCAACACAAGCTCAGGCTGGAAATGGCTCCTCTGTTTGTAAGTGCCATCGCTTGTaGCTGCATCGCTGGCACACA | + |
|
Preference number: 4 (lower is better) Translates to: TDVSMPTQAQAGNGSSVCKCHRL*LHRWHT Trigger: TGTGTGCCAGCGATGCAGGCACAAGCGATGGCACTT...ACAAACAGAGGAGCCATTTCCAGCCTGAGCTTGTGTTGGCATGCTGACATCTGT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000154169.4 |
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| CDS-3UTR CCA 90 bp | GCTTCCTGGACCACAGTGAACCTGGCATCCACACTGGCATCTCTGCTTAGTAGATTTTTCATAATGTACTaGACAATCTGGCCGACCGTG | + |
|
Preference number: 4 (lower is better) Translates to: ASWTTVNLASTLASLLSRFFIMY*TIWPTV Trigger: CACGGTCGGCCAGATTGTCCAGTACATTATGAAAAA...TCTACTAAGCAGAGATGCCAGTGTGGATGCCAGGTTCACTGTGGTCCAGGAAGC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000154169.4 |
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| CDS-3UTR TCA 90 bp | CTTTCAAAGCAAGCTGAATTCTGTGTCCAGCGTAGCAAAAATATGCCCTTTTGGCACCAAGGAGACCCATaGCGAAGAACACAGGGACGA | + |
|
Preference number: 4 (lower is better) Translates to: LSKQAEFCVQRSKNMPFWHQGDP*RRTQGR Trigger: TCGTCCCTGTGTTCTTCGTCATGGGTCTCCTTGGTG...CCAAAAGGGCATATTTTTGCTACGCTGGACACAGAATTCAGCTTGCTTTGAAAG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000154169.4 |
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| CDS-3UTR TCA 90 bp | ACAGATGTCAGCATGCCAACACAAGCTCAGGCTGGAAATGGCTCCTCTGTTTGTAACCTCTTGTGCAAGTaGATAGTTTCAAAACCACGC | + |
|
Preference number: 4 (lower is better) Translates to: TDVSMPTQAQAGNGSSVCNLLCK*IVSKPR Trigger: GCGTGGTTTTGAAACTATTCACTTGCACAAGAGGTT...ACAAACAGAGGAGCCATTTCCAGCCTGAGCTTGTGTTGGCATGCTGACATCTGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087327.13 |
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| CDS-3UTR TCA 90 bp | GGGACCTTTTGCAGGCAAGAGTCTTCTGTAACAGCCCAACTGTGTGTATTAAGACACTCTCAATGCCACTaGCAGACATCAAACTTCTGC | + |
|
Preference number: 4 (lower is better) Translates to: GTFCRQESSVTAQLCVLRHSQCH*QTSNFC Trigger: GCAGAAGTTTGATGTCTGTCAGTGGCATTGAGAGTG...TCTTAATACACACAGTTGGGCTGTTACAGAAGACTCTTGCCTGCAAAAGGTCCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000154169.4 |
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| CDS-3UTR TCA 90 bp | ATATTCCCTAGGCGACTTCATTATCTCGCAAGTTCGGAGTCTCTTAGAACTCTTGCGCTCCTTCTGATTTaGCTTGTGCTCCACTTTCGT | + |
|
Preference number: 4 (lower is better) Translates to: IFPRRLHYLASSESLRTLALLLI*LVLHFR Trigger: ACGAAAGTGGAGCACAAGTCAAATCAGAAGGAGCGC...AAGAGTTCTAAGAGACTCCGAACTTGCGAGATAATGAAGTCGCCTAGGGAATAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000154169.4 |
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| CDS-3UTR CCA 90 bp | CCAAAGCTTCTTTCAAAGCAAGCTGAATTCTGTGTCCAGCGTAGCAAAAATATGGTGGCCGTCCCTCTTTaGTCTTGTTGGTGGGTTTTA | + |
|
Preference number: 4 (lower is better) Translates to: PKLLSKQAEFCVQRSKNMVAVPL*SCWWVL Trigger: TAAAACCCACCAACAAGACCAAAGAGGGACGGCCAC...CATATTTTTGCTACGCTGGACACAGAATTCAGCTTGCTTTGAAAGAAGCTTTGG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000154169.4 |
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| CDS-3UTR TCA 90 bp | ATATTCCCTAGGCGACTTCATTATCTCGCAAGTTCGGAGTCTCTTAGAACTCTTTTCTTCTTAAGTAAGTaGCAGATGAGGACACCAAGG | + |
|
Preference number: 4 (lower is better) Translates to: IFPRRLHYLASSESLRTLFFLSK*QMRTPR Trigger: CCTTGGTGTCCTCATCTGTCACTTACTTAAGAAGAA...AAGAGTTCTAAGAGACTCCGAACTTGCGAGATAATGAAGTCGCCTAGGGAATAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000154169.4 |
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| CDS TCA 90 bp | GTCGGCGGCCACCAGCGGCGAACTCACAGCGCCTCCCACGAACACTaGAGCAGCAAGCACAGCGGACCCCGGGAGTCCCCACAGAGCCAT | + |
|
Preference number: 5 (lower is better) Translates to: VGGHQRRTHSASHEH*SSKHSGPRESPQSH Trigger: ATGGCTCTGTGGGGACTCCCGGGGTCCGCTGTGCTTGCTGCTTCAGTGTTCGTGGGAGGCGCTGTGAGTTCGCCGCTGGTGGCCGCCGAC 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000154169.4 |
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| CDS TCA 90 bp | ATCGGCGGCCACCAGCGGCGAACTCACAGCGCCTCCCACGAACACTaGAGCAGCAAGCACAGCGGACCCCGGGAGTCCCCACAGAGCCAT | + |
|
Preference number: 5 (lower is better) Translates to: IGGHQRRTHSASHEH*SSKHSGPRESPQSH Trigger: ATGGCTCTGTGGGGACTCCCGGGGTCCGCTGTGCTTGCTGCTTCAGTGTTCGTGGGAGGCGCTGTGAGTTCGCCGCTGGTGGCCGCCGAT 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000087327.13 |
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| CDS CCA 90 bp | TTGGTGGGTGACGATGGAGTGGTCTCTGCTCGGGAGTGTAACGTGTaGCTACCAGTGTTGTCGGCGGCCACCAGCGGCGAACTCACAGCG | + |
|
Preference number: 5 (lower is better) Translates to: LVGDDGVVSARECNV*LPVLSAATSGELTA Trigger: CGCTGTGAGTTCGCCGCTGGTGGCCGCCGACAACACTGGTAGCCACACGTTACACTCCCGAGCAGAGACCACTCCATCGTCACCCACCAA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000154169.4 |
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| CDS-3UTR CAA 90 bp | TTCAGGAACAGATGTCAGCATGCCAACACAAGCTCAGGCTGGAAATGGCTCCTCGACGGTGACCTCGCCTaGTCGCCGTGGCCGTCCCTC | + |
|
Preference number: 5 (lower is better) Translates to: FRNRCQHANTSSGWKWLLDGDLA*SPWPSL Trigger: GAGGGACGGCCACGGCGACAAGGCGAGGTCACCGTC...GAGGAGCCATTTCCAGCCTGAGCTTGTGTTGGCATGCTGACATCTGTTCCTGAA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000154169.4 |
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| CDS CCA 90 bp | ATTCCGGGTGTCCATTCCCAGGGTTGTTGGTGGGTGACGATGGAGTaGTCTCTGCTCGGGAGTGTAACGTGTGGCTACCAGTGTTGTCGG | + |
|
Preference number: 5 (lower is better) Translates to: IPGVHSQGCWWVTME*SLLGSVTCGYQCCR Trigger: CCGACAACACTGGTAGCCACACGTTACACTCCCGAGCAGAGACCACTCCATCGTCACCCACCAACAACCCTGGGAATGGACACCCGGAAT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000154169.4 |
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| CDS-3UTR CAA 90 bp | AACATTACTCCCATGAGCACTCACTCTGCTTCCTGGACCACAGTGAACCTGGCACGTGGCCGTCCCTCTTaGGTCTTGTTGGTGGGTTTT | + |
|
Preference number: 5 (lower is better) Translates to: NITPMSTHSASWTTVNLARGRPS*VLLVGF Trigger: AAAACCCACCAACAAGACCAAAGAGGGACGGCCACG...TGCCAGGTTCACTGTGGTCCAGGAAGCAGAGTGAGTGCTCATGGGAGTAATGTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000154169.4 |
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| CDS-3UTR CAA 90 bp | ACCAAGTCACTAGCTGCCAGTGTGGGTTCACATCAAACTGCATCTACCACACGCTGCGCTCCTTCTGATTaGACTTGTGCTCCACTTTCG | + |
|
Preference number: 5 (lower is better) Translates to: TKSLAASVGSHQTASTTRCAPSD*TCAPLS Trigger: CGAAAGTGGAGCACAAGTCAAATCAGAAGGAGCGCA...GCGTGTGGTAGATGCAGTTTGATGTGAACCCACACTGGCAGCTAGTGACTTGGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000154169.4 |
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| CDS-3UTR CAA 90 bp | GGGACCTTTTGCAGGCAAGAGTCTTCTGTAACAGCCCAACTGTGTGTATTAAGACCCTCTTTGGTCTTGTaGGTGGGTTTTATGAAGTGC | + |
|
Preference number: 5 (lower is better) Translates to: GTFCRQESSVTAQLCVLRPSLVL*VGFMKC Trigger: GCACTTCATAAAACCCACCAACAAGACCAAAGAGGG...TCTTAATACACACAGTTGGGCTGTTACAGAAGACTCTTGCCTGCAAAAGGTCCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000154169.4 |
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| CDS TCA 72 bp | CACCAGCGGCGAACTCACAGCGCCTCCCACGAACACTaGAGCAGCAAGCACAGCGGACCCCGGGAGTCCCCA | + |
|
Preference number: 6 (lower is better) Translates to: HQRRTHSASHEH*SSKHSGPRESP Trigger: TGGGGACTCCCGGGGTCCGCTGTGCTTGCTGCTTCAGTGTTCGTGGGAGGCGCTGTGAGTTCGCCGCTGGTG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000087327.13 ENSMUST00000154169.4 |
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| CDS CAA 72 bp | GTCTCTGCTCGGGAGTGTAACGTGTGGCTACCAGTGTaGTCGGCGGCCACCAGCGGCGAACTCACAGCGCCT | + |
|
Preference number: 6 (lower is better) Translates to: VSARECNVWLPV*SAATSGELTAP Trigger: AGGCGCTGTGAGTTCGCCGCTGGTGGCCGCCGACAACACTGGTAGCCACACGTTACACTCCCGAGCAGAGAC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000154169.4 |
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| CDS CAA 90 bp | GATGGAGTGGTCTCTGCTCGGGAGTGTAACGTGTGGCTACCAGTGTaGTCGGCGGCCACCAGCGGCGAACTCACAGCGCCTCCCACGAAC | + |
|
Preference number: 6 (lower is better) Translates to: DGVVSARECNVWLPV*SAATSGELTAPPTN Trigger: GTTCGTGGGAGGCGCTGTGAGTTCGCCGCTGGTGGCCGCCGACAACACTGGTAGCCACACGTTACACTCCCGAGCAGAGACCACTCCATC 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000154169.4 |
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| CDS TCA 72 bp | ACGCCCCTTCTCTGGCTGAAGAACCTCTTGTGCAAGTaGATAGTTTCAAAACCACGCAAATGGTATATGTAT | + |
|
Preference number: 6 (lower is better) Translates to: TPLLWLKNLLCK*IVSKPRKWYMY Trigger: ATACATATACCATTTGCGTGGTTTTGAAACTATTCACTTGCACAAGAGGTTCTTCAGCCAGAGAAGGGGCGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000087327.13 |
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