RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for REG4 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000027876

Ensembl transcript IDs: ENSMUST00000029469.5

Found 31 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp TGCTACAGTGTTTACTCTGGGATAATGATTAGATCAGCCACCAGGTaGGAGGGAAGTGGGAAGAGTTTGTGCAAGGCTGGTAGACGCTTG +
Preference number: 1 (lower is better)
Translates to: CYSVYSGIMIRSATR*EGSGKSLCKAGRRL
Trigger: CAAGCGTCTACCAGCCTTGCACAAACTCTTCCCACTTCCCTCTCACCTGGTGGCTGATCTAATCATTATCCCAGAGTAAACACTGTAGCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029469.5
3UTR-3UTR TCA 90 bp TTGATAGCCAGTGCCCTGGAGGCCTCCTCAATGTTTGCTACAGTGTTTACTCTGAGATCAGCCACCAGGTaGGAGGGAAGTGGGAAGAGT +
Preference number: 2 (lower is better)
Translates to: LIASALEASSMFATVFTLRSATR*EGSGKS
Trigger: ACTCTTCCCACTTCCCTCTCACCTGGTGGCTGATCT...CAGAGTAAACACTGTAGCAAACATTGAGGAGGCCTCCAGGGCACTGGCTATCAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029469.5
3UTR-3UTR TCA 90 bp AGAAAGGATTGTAGAGTGAACACGGAGACCAGAAGCCCTTGTCCCACCATGCTACACCATGCTAAACTCTaGGACCGGAAGCCACTGTCC +
Preference number: 2 (lower is better)
Translates to: RKDCRVNTETRSPCPTMLHHAKL*DRKPLS
Trigger: GGACAGTGGCTTCCGGTCTCAGAGTTTAGCATGGTG...TAGCATGGTGGGACAAGGGCTTCTGGTCTCCGTGTTCACTCTACAATCCTTTCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029469.5
3UTR-3UTR CCA 90 bp ACCAGAAAGGATTGTAGAGTGAACACGGAGACCAGAAGCCCTTGTCCCACCATGCAGGTGAGAGGGAAGTaGGAAGAGTTTGTGCAAGGC +
Preference number: 2 (lower is better)
Translates to: TRKDCRVNTETRSPCPTMQVRGK*EEFVQG
Trigger: GCCTTGCACAAACTCTTCCCACTTCCCTCTCACCTG...CATGGTGGGACAAGGGCTTCTGGTCTCCGTGTTCACTCTACAATCCTTTCTGGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029469.5
3UTR-3UTR CAA 90 bp CTCAATGTTTGCTACAGTGTTTACTCTGGGATAATGATTAGATCAGCCACCAGGGGAAGTGGGAAGAGTTaGTGCAAGGCTGGTAGACGC +
Preference number: 3 (lower is better)
Translates to: LNVCYSVYSGIMIRSATRGSGKS*CKAGRR
Trigger: GCGTCTACCAGCCTTGCACAAACTCTTCCCACTTCC...CCTGGTGGCTGATCTAATCATTATCCCAGAGTAAACACTGTAGCAAACATTGAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029469.5
CDS-3UTR CCA 90 bp AGAAAGGATTGTAGAGTGAACACGGAGACCAGAAGCCCTTGTCCCACCATGCTAATCCTGGGGCACAGCTaGGTCTCAAGATATCGCTCA +
Preference number: 4 (lower is better)
Translates to: RKDCRVNTETRSPCPTMLILGHS*VSRYRS
Trigger: TGAGCGATATCTTGAGACCCAGCTGTGCCCCAGGAT...TAGCATGGTGGGACAAGGGCTTCTGGTCTCCGTGTTCACTCTACAATCCTTTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029469.5
CDS-3UTR CCA 90 bp AGAAAGGATTGTAGAGTGAACACGGAGACCAGAAGCCCTTGTCCCACCATGCTATCTCAGCGCAATGCCTaGCTTCACTCTTTGTCCTGG +
Preference number: 4 (lower is better)
Translates to: RKDCRVNTETRSPCPTMLSQRNA*LHSLSW
Trigger: CCAGGACAAAGAGTGAAGCCAGGCATTGCGCTGAGA...TAGCATGGTGGGACAAGGGCTTCTGGTCTCCGTGTTCACTCTACAATCCTTTCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029469.5
CDS-3UTR CCA 90 bp AGAAAGGATTGTAGAGTGAACACGGAGACCAGAAGCCCTTGTCCCACCATGCTACTTCACTCTTTGTCCTaGGATTCCAGCGTCTGTACA +
Preference number: 4 (lower is better)
Translates to: RKDCRVNTETRSPCPTMLLHSLS*DSSVCT
Trigger: TGTACAGACGCTGGAATCCCAGGACAAAGAGTGAAG...TAGCATGGTGGGACAAGGGCTTCTGGTCTCCGTGTTCACTCTACAATCCTTTCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029469.5
CDS-3UTR CCA 90 bp AGAAAGGATTGTAGAGTGAACACGGAGACCAGAAGCCCTTGTCCCACCATGCTATTGCACAGGAAGTGTTaGCGGTTGGCACATCCATTT +
Preference number: 4 (lower is better)
Translates to: RKDCRVNTETRSPCPTMLLHRKC*RLAHPF
Trigger: AAATGGATGTGCCAACCGCCAACACTTCCTGTGCAA...TAGCATGGTGGGACAAGGGCTTCTGGTCTCCGTGTTCACTCTACAATCCTTTCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029469.5
CDS-3UTR CCA 90 bp AAGACAATGAGAGGGAAGGGGAGTACCAGAAAGGATTGTAGAGTGAACACGGAGATAGTAAAACCATCCTaGGGCACAGCTGGGTCTCAA +
Preference number: 4 (lower is better)
Translates to: KTMRGKGSTRKDCRVNTEIVKPS*GTAGSQ
Trigger: TTGAGACCCAGCTGTGCCCCAGGATGGTTTTACTAT...CTCCGTGTTCACTCTACAATCCTTTCTGGTACTCCCCTTCCCTCTCATTGTCTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000029469.5
CDS-3UTR GCA 90 bp AGAAAGGATTGTAGAGTGAACACGGAGACCAGAAGCCCTTGTCCCACCATGCTATTGATTCAAGACAGATaGCAGATGGGATCCATTTCC +
Preference number: 4 (lower is better)
Translates to: RKDCRVNTETRSPCPTMLLIQDR*QMGSIS
Trigger: GGAAATGGATCCCATCTGGCATCTGTCTTGAATCAA...TAGCATGGTGGGACAAGGGCTTCTGGTCTCCGTGTTCACTCTACAATCCTTTCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029469.5
CDS-3UTR GCA 90 bp AAGACAATGAGAGGGAAGGGGAGTACCAGAAAGGATTGTAGAGTGAACACGGAGGACCCATCAGTCCACTaGCATAATTGCTTCTTTTGT +
Preference number: 4 (lower is better)
Translates to: KTMRGKGSTRKDCRVNTEDPSVH*HNCFFC
Trigger: ACAAAAGAAGCAATTATGGCAGTGGACTGATGGGTC...CTCCGTGTTCACTCTACAATCCTTTCTGGTACTCCCCTTCCCTCTCATTGTCTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000029469.5
CDS-3UTR CCA 90 bp CTCAATGTTTGCTACAGTGTTTACTCTGGGATAATGATTAGATCAGCCACCAGGGGAAGTGTTGGCGGTTaGCACATCCATTTTTGTTCC +
Preference number: 4 (lower is better)
Translates to: LNVCYSVYSGIMIRSATRGSVGG*HIHFCS
Trigger: GGAACAAAAATGGATGTGCCAACCGCCAACACTTCC...CCTGGTGGCTGATCTAATCATTATCCCAGAGTAAACACTGTAGCAAACATTGAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000029469.5
CDS-3UTR CCA 90 bp AAGACAATGAGAGGGAAGGGGAGTACCAGAAAGGATTGTAGAGTGAACACGGAGTTAAGAATTTATCCTTaGGGTTCATCTCAGCGCAAT +
Preference number: 4 (lower is better)
Translates to: KTMRGKGSTRKDCRVNTELRIYP*GSSQRN
Trigger: ATTGCGCTGAGATGAACCCCAAGGATAAATTCTTAA...CTCCGTGTTCACTCTACAATCCTTTCTGGTACTCCCCTTCCCTCTCATTGTCTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029469.5
CDS-3UTR TCA 90 bp CTCAATGTTTGCTACAGTGTTTACTCTGGGATAATGATTAGATCAGCCACCAGGGCCAGTTATGTACTTTaGTATGACACTGGCTTCCTT +
Preference number: 4 (lower is better)
Translates to: LNVCYSVYSGIMIRSATRASYVL*YDTGFL
Trigger: AAGGAAGCCAGTGTCATATCAAAGTACATAACTGGC...CCTGGTGGCTGATCTAATCATTATCCCAGAGTAAACACTGTAGCAAACATTGAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029469.5
CDS CCA 90 bp CTTCCGGAAGTACCCATAGCAGTGGGACCTATAGTAAAACCATCCTaGGGCACAGCTGGGTCTCAAGATATCGCTCAGGACTTCGGGGCC +
Preference number: 5 (lower is better)
Translates to: LPEVPIAVGPIVKPS*GTAGSQDIAQDFGA
Trigger: GGCCCCGAAGTCCTGAGCGATATCTTGAGACCCAGCTGTGCCCCAGGATGGTTTTACTATAGGTCCCACTGCTATGGGTACTTCCGGAAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000029469.5
CDS-3UTR CAA 90 bp TTGATAGCCAGTGCCCTGGAGGCCTCCTCAATGTTTGCTACAGTGTTTACTCTGCTTGCACAGGAAGTGTaGGCGGTTGGCACATCCATT +
Preference number: 5 (lower is better)
Translates to: LIASALEASSMFATVFTLLAQEV*AVGTSI
Trigger: AATGGATGTGCCAACCGCCAACACTTCCTGTGCAAG...CAGAGTAAACACTGTAGCAAACATTGAGGAGGCCTCCAGGGCACTGGCTATCAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029469.5
CDS-3UTR CAA 90 bp ACCAGAAAGGATTGTAGAGTGAACACGGAGACCAGAAGCCCTTGTCCCACCATGGACACTGGCTTCCTTTaGATTCAAGACAGATGCCAG +
Preference number: 5 (lower is better)
Translates to: TRKDCRVNTETRSPCPTMDTGFL*IQDRCQ
Trigger: CTGGCATCTGTCTTGAATCAAAAGGAAGCCAGTGTC...CATGGTGGGACAAGGGCTTCTGGTCTCCGTGTTCACTCTACAATCCTTTCTGGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029469.5
CDS-3UTR CAA 90 bp ATGAGAGGGAAGGGGAGTACCAGAAAGGATTGTAGAGTGAACACGGAGACCAGAAGGAAGTGTTGGCGGTaGGCACATCCATTTTTGTTC +
Preference number: 5 (lower is better)
Translates to: MRGKGSTRKDCRVNTETRRKCWR*AHPFLF
Trigger: GAACAAAAATGGATGTGCCAACCGCCAACACTTCCT...TCTGGTCTCCGTGTTCACTCTACAATCCTTTCTGGTACTCCCCTTCCCTCTCAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000029469.5
CDS GCA 90 bp TTGTTCCAAGTTAAGAATTTATCCTTGGGGTTCATCTCAGCGCAATaGCTGGCTTCACTCTTTGTCCTGGGATTCCAGCGTCTGTACAGG +
Preference number: 5 (lower is better)
Translates to: LFQVKNLSLGFISAQ*LASLFVLGFQRLYR
Trigger: CCTGTACAGACGCTGGAATCCCAGGACAAAGAGTGAAGCCAGGCATTGCGCTGAGATGAACCCCAAGGATAAATTCTTAACTTGGAACAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029469.5
CDS CCA 90 bp GGCGGTTGGCACATCCATTTTTGTTCCAAGTTAAGAATTTATCCTTaGGGTTCATCTCAGCGCAATGCCTGGCTTCACTCTTTGTCCTGG +
Preference number: 5 (lower is better)
Translates to: GGWHIHFCSKLRIYP*GSSQRNAWLHSLSW
Trigger: CCAGGACAAAGAGTGAAGCCAGGCATTGCGCTGAGATGAACCCCAAGGATAAATTCTTAACTTGGAACAAAAATGGATGTGCCAACCGCC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000029469.5
CDS-3UTR CAA 90 bp AAGACAATGAGAGGGAAGGGGAGTACCAGAAAGGATTGTAGAGTGAACACGGAGGTTAAGAATTTATCCTaGGGGTTCATCTCAGCGCAA +
Preference number: 5 (lower is better)
Translates to: KTMRGKGSTRKDCRVNTEVKNLS*GFISAQ
Trigger: TTGCGCTGAGATGAACCCCAAGGATAAATTCTTAAC...CTCCGTGTTCACTCTACAATCCTTTCTGGTACTCCCCTTCCCTCTCATTGTCTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000029469.5
CDS TCA 90 bp GCCAATCCACACAGGCAGGTTTCTCTGATAGCCAGTTATGTACTTTaGTATGACACTGGCTTCCTTTTGATTCAAGACAGATGCCAGATG +
Preference number: 5 (lower is better)
Translates to: ANPHRQVSLIASYVL*YDTGFLLIQDRCQM
Trigger: CATCTGGCATCTGTCTTGAATCAAAAGGAAGCCAGTGTCATATCAAAGTACATAACTGGCTATCAGAGAAACCTGCCTGTGTGGATTGGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029469.5
CDS CCA 72 bp GTACCCATAGCAGTGGGACCTATAGTAAAACCATCCTaGGGCACAGCTGGGTCTCAAGATATCGCTCAGGAC +
Preference number: 6 (lower is better)
Translates to: VPIAVGPIVKPS*GTAGSQDIAQD
Trigger: GTCCTGAGCGATATCTTGAGACCCAGCTGTGCCCCAGGATGGTTTTACTATAGGTCCCACTGCTATGGGTAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029469.5
CDS CCA 72 bp AGAATTTATCCTTGGGGTTCATCTCAGCGCAATGCCTaGCTTCACTCTTTGTCCTGGGATTCCAGCGTCTGT +
Preference number: 6 (lower is better)
Translates to: RIYPWGSSQRNA*LHSLSWDSSVC
Trigger: ACAGACGCTGGAATCCCAGGACAAAGAGTGAAGCCAGGCATTGCGCTGAGATGAACCCCAAGGATAAATTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029469.5
CDS GCA 72 bp GTTAAGAATTTATCCTTGGGGTTCATCTCAGCGCAATaGCTGGCTTCACTCTTTGTCCTGGGATTCCAGCGT +
Preference number: 6 (lower is better)
Translates to: VKNLSLGFISAQ*LASLFVLGFQR
Trigger: ACGCTGGAATCCCAGGACAAAGAGTGAAGCCAGGCATTGCGCTGAGATGAACCCCAAGGATAAATTCTTAAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029469.5
CDS CAA 90 bp TGGCGGTTGGCACATCCATTTTTGTTCCAAGTTAAGAATTTATCCTaGGGGTTCATCTCAGCGCAATGCCTGGCTTCACTCTTTGTCCTG +
Preference number: 6 (lower is better)
Translates to: WRLAHPFLFQVKNLS*GFISAQCLASLFVL
Trigger: CAGGACAAAGAGTGAAGCCAGGCATTGCGCTGAGATGAACCCCAAGGATAAATTCTTAACTTGGAACAAAAATGGATGTGCCAACCGCCA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000029469.5
CDS CAA 72 bp GCACATCCATTTTTGTTCCAAGTTAAGAATTTATCCTaGGGGTTCATCTCAGCGCAATGCCTGGCTTCACTC +
Preference number: 6 (lower is better)
Translates to: AHPFLFQVKNLS*GFISAQCLASL
Trigger: GAGTGAAGCCAGGCATTGCGCTGAGATGAACCCCAAGGATAAATTCTTAACTTGGAACAAAAATGGATGTGC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000029469.5
CDS CCA 72 bp CACATCCATTTTTGTTCCAAGTTAAGAATTTATCCTTaGGGTTCATCTCAGCGCAATGCCTGGCTTCACTCT +
Preference number: 6 (lower is better)
Translates to: HIHFCSKLRIYP*GSSQRNAWLHS
Trigger: AGAGTGAAGCCAGGCATTGCGCTGAGATGAACCCCAAGGATAAATTCTTAACTTGGAACAAAAATGGATGTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000029469.5
CDS CAA 72 bp TTGCACAGGAAGTGTTGGCGGTTGGCACATCCATTTTaGTTCCAAGTTAAGAATTTATCCTTGGGGTTCATC +
Preference number: 6 (lower is better)
Translates to: LHRKCWRLAHPF*FQVKNLSLGFI
Trigger: GATGAACCCCAAGGATAAATTCTTAACTTGGAACAAAAATGGATGTGCCAACCGCCAACACTTCCTGTGCAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000029469.5
CDS TCA 72 bp CACAGGCAGGTTTCTCTGATAGCCAGTTATGTACTTTaGTATGACACTGGCTTCCTTTTGATTCAAGACAGA +
Preference number: 6 (lower is better)
Translates to: HRQVSLIASYVL*YDTGFLLIQDR
Trigger: TCTGTCTTGAATCAAAAGGAAGCCAGTGTCATATCAAAGTACATAACTGGCTATCAGAGAAACCTGCCTGTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029469.5