Pregenerated sensors for REG3D (Mus musculus)
Ensembl gene IDs: ENSMUSG00000068341Ensembl transcript IDs: ENSMUST00000089667.8, ENSMUST00000167492.4, ENSMUST00000205240.2
Found 37 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | TTGTTCTCCGAATCCTTAGGCCAGAGTCCCCAGAGAATACACTTATaGAAGAACAGCAGAGATGAGATGAGGAATTCGGTGTCGGGGTGT | + |
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Preference number: 1 (lower is better) Translates to: LFSESLGQSPQRIHL*KNSRDEMRNSVSGC Trigger: ACACCCCGACACCGAATTCCTCATCTCATCTCTGCTGTTCTTCCATAAGTGTATTCTCTGGGGACTCTGGCCTAAGGATTCGGAGAACAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000089667.8 ENSMUST00000167492.4 |
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| 3UTR-3UTR TCA 90 bp | TGGAAGAACAGCAGAGATGAGATGAGGAATTCGGTGTCGGGGTGTGAGAAGGACGCTCCTTTGTCTATGTaGTCTTCAGGATACTTTCAG | + |
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Preference number: 2 (lower is better) Translates to: WKNSRDEMRNSVSGCEKDAPLSM*SSGYFQ Trigger: CTGAAAGTATCCTGAAGATCACATAGACAAAGGAGC...GTCCTTCTCACACCCCGACACCGAATTCCTCATCTCATCTCTGCTGTTCTTCCA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000089667.8 ENSMUST00000167492.4 ENSMUST00000205240.2 |
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| 3UTR-3UTR GCA 90 bp | ATACACTTATGGAAGAACAGCAGAGATGAGATGAGGAATTCGGTGTCGGGGTGTCTTGGTGAGCCATCATaGTTGCTCCTTTGTCTATGT | + |
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Preference number: 2 (lower is better) Translates to: IHLWKNSRDEMRNSVSGCLGEPS*LLLCLC Trigger: ACATAGACAAAGGAGCAAGCATGATGGCTCACCAAG...ACACCCCGACACCGAATTCCTCATCTCATCTCTGCTGTTCTTCCATAAGTGTAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000089667.8 ENSMUST00000167492.4 ENSMUST00000205240.2 |
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| 3UTR-3UTR TCA 90 bp | ATTTTATTATTGTTCTCCGAATCCTTAGGCCAGAGTCCCCAGAGAATACACTTAACAGCAGAGATGAGATaGGGAATTCGGTGTCGGGGT | + |
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Preference number: 2 (lower is better) Translates to: ILLLFSESLGQSPQRIHLTAEMR*GIRCRG Trigger: ACCCCGACACCGAATTCCTCATCTCATCTCTGCTGT...TAAGTGTATTCTCTGGGGACTCTGGCCTAAGGATTCGGAGAACAATAATAAAAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000089667.8 ENSMUST00000167492.4 |
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| 3UTR-3UTR GCA 90 bp | ATTTTATTATTGTTCTCCGAATCCTTAGGCCAGAGTCCCCAGAGAATACACTTACTTGGTGAGCCATCATaGTTGCTCCTTTGTCTATGT | + |
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Preference number: 2 (lower is better) Translates to: ILLLFSESLGQSPQRIHLLGEPS*LLLCLC Trigger: ACATAGACAAAGGAGCAAGCATGATGGCTCACCAAG...TAAGTGTATTCTCTGGGGACTCTGGCCTAAGGATTCGGAGAACAATAATAAAAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000089667.8 ENSMUST00000167492.4 |
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| CDS-3UTR GCA 90 bp | CGGGGTGTGAGAAGGACTTTCTTGGTGAGCCATCATGCTTGCTCCTTTGTCTATGGCCTGAGACAAAGCTaGACAGTAGCCGTGGTGTGC | + |
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Preference number: 4 (lower is better) Translates to: RGVRRTFLVSHHACSFVYGLRQS*TVAVVC Trigger: GCACACCACGGCTACTGTGCAGCTTTGTCTCAGGCC...ATAGACAAAGGAGCAAGCATGATGGCTCACCAAGAAAGTCCTTCTCACACCCCG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000089667.8 ENSMUST00000167492.4 ENSMUST00000205240.2 |
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| CDS-3UTR GCA 90 bp | CGGGGTGTGAGAAGGACTTTCTTGGTGAGCCATCATGCTTGCTCCTTTGTCTATGGGCAAACTCCCCTCTaGATTAGCCCAGGTCTGTGG | + |
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Preference number: 4 (lower is better) Translates to: RGVRRTFLVSHHACSFVYGQTPL*ISPGLW Trigger: CCACAGACCTGGGCTAATGCAGAGGGGAGTTTGCCC...ATAGACAAAGGAGCAAGCATGATGGCTCACCAAGAAAGTCCTTCTCACACCCCG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000167492.4 ENSMUST00000205240.2 |
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| CDS-3UTR TCA 90 bp | GTGTCGGGGTGTGAGAAGGACTTTCTTGGTGAGCCATCATGCTTGCTCCTTTGTCTTCTTGGGGACAGCTaGTGCGTGGAGAAGACAGTT | + |
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Preference number: 4 (lower is better) Translates to: VSGCEKDFLGEPSCLLLCLLGDS*CVEKTV Trigger: AACTGTCTTCTCCACGCATCAGCTGTCCCCAAGAAG...ACAAAGGAGCAAGCATGATGGCTCACCAAGAAAGTCCTTCTCACACCCCGACAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000089667.8 ENSMUST00000167492.4 ENSMUST00000205240.2 |
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| CDS-3UTR GCA 90 bp | TTATGGAAGAACAGCAGAGATGAGATGAGGAATTCGGTGTCGGGGTGTGAGAAGGGGCAAACTCCCCTCTaGATTAGCCCAGGTCTGTGG | + |
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Preference number: 4 (lower is better) Translates to: LWKNSRDEMRNSVSGCEKGQTPL*ISPGLW Trigger: CCACAGACCTGGGCTAATGCAGAGGGGAGTTTGCCC...CTTCTCACACCCCGACACCGAATTCCTCATCTCATCTCTGCTGTTCTTCCATAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000167492.4 ENSMUST00000205240.2 |
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| CDS-3UTR GCA 90 bp | ATACACTTATGGAAGAACAGCAGAGATGAGATGAGGAATTCGGTGTCGGGGTGTGGCCTGAGACAAAGCTaGACAGTAGCCGTGGTGTGC | + |
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Preference number: 4 (lower is better) Translates to: IHLWKNSRDEMRNSVSGCGLRQS*TVAVVC Trigger: GCACACCACGGCTACTGTGCAGCTTTGTCTCAGGCC...ACACCCCGACACCGAATTCCTCATCTCATCTCTGCTGTTCTTCCATAAGTGTAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000089667.8 ENSMUST00000167492.4 ENSMUST00000205240.2 |
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| CDS-3UTR TCA 90 bp | GGTGTGAGAAGGACTTTCTTGGTGAGCCATCATGCTTGCTCCTTTGTCTATGTGCTTCTTGGGGACAGCTaGTGCGTGGAGAAGACAGTT | + |
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Preference number: 4 (lower is better) Translates to: GVRRTFLVSHHACSFVYVLLGDS*CVEKTV Trigger: AACTGTCTTCTCCACGCATCAGCTGTCCCCAAGAAG...CACATAGACAAAGGAGCAAGCATGATGGCTCACCAAGAAAGTCCTTCTCACACC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000089667.8 ENSMUST00000167492.4 ENSMUST00000205240.2 |
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| CDS-3UTR GCA 90 bp | GGTGTGAGAAGGACTTTCTTGGTGAGCCATCATGCTTGCTCCTTTGTCTATGTGGTAGCATCCAGGACATaGTATGAAGGGTCTTGTGAG | + |
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Preference number: 4 (lower is better) Translates to: GVRRTFLVSHHACSFVYVVASRT*YEGSCE Trigger: CTCACAAGACCCTTCATAGCATGTCCTGGATGCTAC...CACATAGACAAAGGAGCAAGCATGATGGCTCACCAAGAAAGTCCTTCTCACACC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000089667.8 ENSMUST00000167492.4 ENSMUST00000205240.2 |
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| CDS-3UTR GCA 90 bp | TTATGGAAGAACAGCAGAGATGAGATGAGGAATTCGGTGTCGGGGTGTGAGAAGTCAGAGGGTCAGAGCTaGTCCACTTCCATCCATTTT | + |
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Preference number: 4 (lower is better) Translates to: LWKNSRDEMRNSVSGCEKSEGQS*STSIHF Trigger: AAAATGGATGGAAGTGGAGCAGCTCTGACCCTCTGA...CTTCTCACACCCCGACACCGAATTCCTCATCTCATCTCTGCTGTTCTTCCATAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000089667.8 ENSMUST00000167492.4 ENSMUST00000205240.2 |
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| CDS-3UTR GCA 90 bp | TCATGCTTGCTCCTTTGTCTATGTGATCTTCAGGATACTTTCAGGCAGTTGAAAGGCCTGAGACAAAGCTaGACAGTAGCCGTGGTGTGC | + |
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Preference number: 4 (lower is better) Translates to: SCLLLCLCDLQDTFRQLKGLRQS*TVAVVC Trigger: GCACACCACGGCTACTGTGCAGCTTTGTCTCAGGCC...TTTCAACTGCCTGAAAGTATCCTGAAGATCACATAGACAAAGGAGCAAGCATGA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000089667.8 ENSMUST00000167492.4 ENSMUST00000205240.2 |
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| CDS-3UTR TCA 90 bp | TGCTTGCTCCTTTGTCTATGTGATCTTCAGGATACTTTCAGGCAGTTGAAATCACTTCTTGGGGACAGCTaGTGCGTGGAGAAGACAGTT | + |
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Preference number: 4 (lower is better) Translates to: CLLLCLCDLQDTFRQLKSLLGDS*CVEKTV Trigger: AACTGTCTTCTCCACGCATCAGCTGTCCCCAAGAAG...TGATTTCAACTGCCTGAAAGTATCCTGAAGATCACATAGACAAAGGAGCAAGCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000089667.8 ENSMUST00000167492.4 ENSMUST00000205240.2 |
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| CDS-3UTR CCA 90 bp | GGTGTGAGAAGGACTTTCTTGGTGAGCCATCATGCTTGCTCCTTTGTCTATGTGCCAAGTGACAGATCATaGAGTCCAATCCAGATGTAT | + |
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Preference number: 4 (lower is better) Translates to: GVRRTFLVSHHACSFVYVPSDRS*SPIQMY Trigger: ATACATCTGGATTGGACTCCATGATCTGTCACTTGG...CACATAGACAAAGGAGCAAGCATGATGGCTCACCAAGAAAGTCCTTCTCACACC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089667.8 |
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| CDS-3UTR GCA 90 bp | ATTATTGTTCTCCGAATCCTTAGGCCAGAGTCCCCAGAGAATACACTTATGGAAGTAGCATCCAGGACATaGTATGAAGGGTCTTGTGAG | + |
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Preference number: 4 (lower is better) Translates to: IIVLRILRPESPENTLMEVASRT*YEGSCE Trigger: CTCACAAGACCCTTCATAGCATGTCCTGGATGCTAC...TTCCATAAGTGTATTCTCTGGGGACTCTGGCCTAAGGATTCGGAGAACAATAAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000089667.8 ENSMUST00000167492.4 |
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| CDS-3UTR CCA 90 bp | AGAAGGACTTTCTTGGTGAGCCATCATGCTTGCTCCTTTGTCTATGTGATCTTCCCTGAGAAATGCTTCTaGCAGTGGATCTCTGCATTA | + |
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Preference number: 4 (lower is better) Translates to: RRTFLVSHHACSFVYVIFPEKCF*QWISAL Trigger: TAATGCAGAGATCCACTGCCAGAAGCATTTCTCAGG...GAAGATCACATAGACAAAGGAGCAAGCATGATGGCTCACCAAGAAAGTCCTTCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089667.8 |
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| CDS-3UTR TCA 90 bp | ATTTTATTATTGTTCTCCGAATCCTTAGGCCAGAGTCCCCAGAGAATACACTTAAAATGCCAGGTGTCCTaGGAAATGCTTCTGGCAGTG | + |
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Preference number: 4 (lower is better) Translates to: ILLLFSESLGQSPQRIHLKCQVS*EMLLAV Trigger: CACTGCCAGAAGCATTTCTCAGGACACCTGGCATTT...TAAGTGTATTCTCTGGGGACTCTGGCCTAAGGATTCGGAGAACAATAATAAAAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000089667.8 |
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| CDS-3UTR GCA 90 bp | TGCTTGCTCCTTTGTCTATGTGATCTTCAGGATACTTTCAGGCAGTTGAAATCAAGGTGTCCTGAGAAATaGTTCTGGCAGTGGATCTCT | + |
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Preference number: 4 (lower is better) Translates to: CLLLCLCDLQDTFRQLKSRCPEK*FWQWIS Trigger: AGAGATCCACTGCCAGAAGCATTTCTCAGGACACCT...TGATTTCAACTGCCTGAAAGTATCCTGAAGATCACATAGACAAAGGAGCAAGCA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089667.8 |
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| CDS-3UTR GCA 90 bp | ATTTTATTATTGTTCTCCGAATCCTTAGGCCAGAGTCCCCAGAGAATACACTTAGTAGCATCCAGGACATaGTATGAAGGGTCTTGTGAG | + |
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Preference number: 4 (lower is better) Translates to: ILLLFSESLGQSPQRIHLVASRT*YEGSCE Trigger: CTCACAAGACCCTTCATAGCATGTCCTGGATGCTAC...TAAGTGTATTCTCTGGGGACTCTGGCCTAAGGATTCGGAGAACAATAATAAAAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000089667.8 ENSMUST00000167492.4 |
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| CDS-3UTR CCA 90 bp | TCATGCTTGCTCCTTTGTCTATGTGATCTTCAGGATACTTTCAGGCAGTTGAAAAGATGTATGGGAATGTaGTCAAACTGTTTTTCACCA | + |
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Preference number: 4 (lower is better) Translates to: SCLLLCLCDLQDTFRQLKRCMGM*SNCFSP Trigger: TGGTGAAAAACAGTTTGACCACATTCCCATACATCT...TTTCAACTGCCTGAAAGTATCCTGAAGATCACATAGACAAAGGAGCAAGCATGA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000089667.8 |
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| CDS-3UTR CAA 90 bp | AAGGACTTTCTTGGTGAGCCATCATGCTTGCTCCTTTGTCTATGTGATCTTCAGATAAGCTTGGGCTTCTaGGGGACAGCTGATGCGTGG | + |
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Preference number: 5 (lower is better) Translates to: KDFLGEPSCLLLCLCDLQISLGF*GTADAW Trigger: CCACGCATCAGCTGTCCCCAAGAAGCCCAAGCTTAT...CTGAAGATCACATAGACAAAGGAGCAAGCATGATGGCTCACCAAGAAAGTCCTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000089667.8 ENSMUST00000167492.4 ENSMUST00000205240.2 |
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| CDS-3UTR CAA 90 bp | CCATCATGCTTGCTCCTTTGTCTATGTGATCTTCAGGATACTTTCAGGCAGTTGATAAGCTTGGGCTTCTaGGGGACAGCTGATGCGTGG | + |
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Preference number: 5 (lower is better) Translates to: PSCLLLCLCDLQDTFRQLISLGF*GTADAW Trigger: CCACGCATCAGCTGTCCCCAAGAAGCCCAAGCTTAT...CAACTGCCTGAAAGTATCCTGAAGATCACATAGACAAAGGAGCAAGCATGATGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000089667.8 ENSMUST00000167492.4 ENSMUST00000205240.2 |
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| CDS-3UTR CAA 90 bp | TCGGGGTGTGAGAAGGACTTTCTTGGTGAGCCATCATGCTTGCTCCTTTGTCTATTCCATCCATTTTCATaGGGCAAACTCCCCTCTGCA | + |
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Preference number: 5 (lower is better) Translates to: SGCEKDFLGEPSCLLLCLFHPFS*GKLPSA Trigger: TGCAGAGGGGAGTTTGCCCAATGAAAATGGATGGAA...TAGACAAAGGAGCAAGCATGATGGCTCACCAAGAAAGTCCTTCTCACACCCCGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000167492.4 ENSMUST00000205240.2 |
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| CDS TCA 90 bp | AGAGCTGCTCCACTTCCATCCATTTTCATTGGGCAAACTCCCAAGTaGCAGATCATGGAGTCCAATCCAGATGTATGGGAATGTGGTCAA | + |
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Preference number: 5 (lower is better) Translates to: RAAPLPSIFIGQTPK*QIMESNPDVWECGQ Trigger: TTGACCACATTCCCATACATCTGGATTGGACTCCATGATCTGTCACTTGGGAGTTTGCCCAATGAAAATGGATGGAAGTGGAGCAGCTCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000089667.8 |
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| CDS TCA 90 bp | GGGAAATATTGTGTCACAATAATAATCTCTCCACTTCTGATAACCTaGGGCCTGAGACAAAGCTGCACAGTAGCCGTGGTGTGCAGACAT | + |
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Preference number: 5 (lower is better) Translates to: GKYCVTIIISPLLIT*GLRQSCTVAVVCRH Trigger: ATGTCTGCACACCACGGCTACTGTGCAGCTTTGTCTCAGGCCTCAGGTTATCAGAAGTGGAGAGATTATTATTGTGACACAATATTTCCC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000089667.8 ENSMUST00000167492.4 ENSMUST00000205240.2 |
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| CDS-3UTR CAA 90 bp | GGTGAGCCATCATGCTTGCTCCTTTGTCTATGTGATCTTCAGGATACTTTCAGGTTCCATCCATTTTCATaGGGCAAACTCCCAAGTGAC | + |
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Preference number: 5 (lower is better) Translates to: GEPSCLLLCLCDLQDTFRFHPFS*GKLPSD Trigger: GTCACTTGGGAGTTTGCCCAATGAAAATGGATGGAA...CCTGAAAGTATCCTGAAGATCACATAGACAAAGGAGCAAGCATGATGGCTCACC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000089667.8 |
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| CDS-3UTR CAA 90 bp | CTTGGTGAGCCATCATGCTTGCTCCTTTGTCTATGTGATCTTCAGGATACTTTCTTCCATCCATTTTCATaGGGCAAACTCCCCTCTGCA | + |
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Preference number: 5 (lower is better) Translates to: LGEPSCLLLCLCDLQDTFFHPFS*GKLPSA Trigger: TGCAGAGGGGAGTTTGCCCAATGAAAATGGATGGAA...GAAAGTATCCTGAAGATCACATAGACAAAGGAGCAAGCATGATGGCTCACCAAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000167492.4 ENSMUST00000205240.2 |
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| CDS CCA 72 bp | AGCTGCACAGTAGCCGTGGTGTGCAGACATGGAGGGTaGTATCTCCCAGTTATAGAAGGTCAGAGGGTCAGA | + |
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Preference number: 6 (lower is better) Translates to: SCTVAVVCRHGG*YLPVIEGQRVR Trigger: TCTGACCCTCTGACCTTCTATAACTGGGAGATACCACCCTCCATGTCTGCACACCACGGCTACTGTGCAGCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000089667.8 ENSMUST00000167492.4 ENSMUST00000205240.2 |
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| CDS CCA 72 bp | GTGAGCAGAAATGCCAGGTGTCCTGAGAAATGCTTCTaGCAGTGGATCTCTGCATTAGCCCAGGTCTGTGGT | + |
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Preference number: 6 (lower is better) Translates to: VSRNARCPEKCF*QWISALAQVCG Trigger: ACCACAGACCTGGGCTAATGCAGAGATCCACTGCCAGAAGCATTTCTCAGGACACCTGGCATTTCTGCTCAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089667.8 |
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| CDS CCA 72 bp | GAGACAAAGCTGCACAGTAGCCGTGGTGTGCAGACATaGAGGGTGGTATCTCCCAGTTATAGAAGGTCAGAG | + |
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Preference number: 6 (lower is better) Translates to: ETKLHSSRGVQT*RVVSPSYRRSE Trigger: CTCTGACCTTCTATAACTGGGAGATACCACCCTCCATGTCTGCACACCACGGCTACTGTGCAGCTTTGTCTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000089667.8 ENSMUST00000167492.4 ENSMUST00000205240.2 |
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| CDS CCA 72 bp | AGAAATGCCAGGTGTCCTGAGAAATGCTTCTGGCAGTaGATCTCTGCATTAGCCCAGGTCTGTGGTTCCAGA | + |
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Preference number: 6 (lower is better) Translates to: RNARCPEKCFWQ*ISALAQVCGSR Trigger: TCTGGAACCACAGACCTGGGCTAATGCAGAGATCCACTGCCAGAAGCATTTCTCAGGACACCTGGCATTTCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089667.8 |
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| CDS GCA 72 bp | GTATCTCCCAGTTATAGAAGGTCAGAGGGTCAGAGCTaGTCCACTTCCATCCATTTTCATTGGGCAAACTCC | + |
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Preference number: 6 (lower is better) Translates to: VSPSYRRSEGQS*STSIHFHWANS Trigger: GGAGTTTGCCCAATGAAAATGGATGGAAGTGGAGCAGCTCTGACCCTCTGACCTTCTATAACTGGGAGATAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000089667.8 ENSMUST00000167492.4 ENSMUST00000205240.2 |
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| CDS TCA 72 bp | TGTGTCACAATAATAATCTCTCCACTTCTGATAACCTaGGGCCTGAGACAAAGCTGCACAGTAGCCGTGGTG | + |
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Preference number: 6 (lower is better) Translates to: CVTIIISPLLIT*GLRQSCTVAVV Trigger: CACCACGGCTACTGTGCAGCTTTGTCTCAGGCCTCAGGTTATCAGAAGTGGAGAGATTATTATTGTGACACA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000089667.8 ENSMUST00000167492.4 ENSMUST00000205240.2 |
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| CDS TCA 72 bp | CCACTTCCATCCATTTTCATTGGGCAAACTCCCAAGTaGCAGATCATGGAGTCCAATCCAGATGTATGGGAA | + |
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Preference number: 6 (lower is better) Translates to: PLPSIFIGQTPK*QIMESNPDVWE Trigger: TTCCCATACATCTGGATTGGACTCCATGATCTGTCACTTGGGAGTTTGCCCAATGAAAATGGATGGAAGTGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000089667.8 |
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| CDS CCA 72 bp | CCATTTTCATTGGGCAAACTCCCAAGTGACAGATCATaGAGTCCAATCCAGATGTATGGGAATGTGGTCAAA | + |
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Preference number: 6 (lower is better) Translates to: PFSLGKLPSDRS*SPIQMYGNVVK Trigger: TTTGACCACATTCCCATACATCTGGATTGGACTCCATGATCTGTCACTTGGGAGTTTGCCCAATGAAAATGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000089667.8 |
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