Pregenerated sensors for REG3B (Mus musculus)
Ensembl gene IDs: ENSMUSG00000071356Ensembl transcript IDs: ENSMUST00000096904.6, ENSMUST00000203266.2, ENSMUST00000204873.3
Found 24 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR GCA 90 bp | GTGAGTCTTCACATTTTGTCCCTTGTCCATGATGCTCTTCAAGACAAATTCGGGACCTCCATTGGGTTCTaGACCCAGAGTGGGGTCATG | + |
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Preference number: 4 (lower is better) Translates to: VSLHILSLVHDALQDKFGTSIGF*TQSGVM Trigger: CATGACCCCACTCTGGGTGCAGAACCCAATGGAGGT...CCCGAATTTGTCTTGAAGAGCATCATGGACAAGGGACAAAATGTGAAGACTCAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000096904.6 |
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| CDS-3UTR CCA 90 bp | TTCACATTTTGTCCCTTGTCCATGATGCTCTTCAAGACAAATTCGGGATGTTTGGTTCTGCACCCAGAGTaGGGTCATGGAGCCCAATCC | + |
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Preference number: 4 (lower is better) Translates to: FTFCPLSMMLFKTNSGCLVLHPE*GHGAQS Trigger: GGATTGGGCTCCATGACCCCACTCTGGGTGCAGAAC...CAAACATCCCGAATTTGTCTTGAAGAGCATCATGGACAAGGGACAAAATGTGAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000096904.6 |
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| CDS-3UTR GCA 90 bp | AGTCTTCACATTTTGTCCCTTGTCCATGATGCTCTTCAAGACAAATTCGGGATGTTGGCAGGCCAGTTCTaGATCAAACCAGGTCTGTGG | + |
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Preference number: 4 (lower is better) Translates to: SLHILSLVHDALQDKFGMLAGQF*IKPGLW Trigger: CCACAGACCTGGTTTGATGCAGAACTGGCCTGCCAA...CATCCCGAATTTGTCTTGAAGAGCATCATGGACAAGGGACAAAATGTGAAGACT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000096904.6 |
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| CDS-3UTR TCA 90 bp | CTTCACATTTTGTCCCTTGTCCATGATGCTCTTCAAGACAAATTCGGGATGTTTAAGCCTCAGCGCTATTaGGCACAGATACGAGGTGTC | + |
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Preference number: 4 (lower is better) Translates to: LHILSLVHDALQDKFGMFKPQRY*AQIRGV Trigger: GACACCTCGTATCTGTGCTCAATAGCGCTGAGGCTT...AAACATCCCGAATTTGTCTTGAAGAGCATCATGGACAAGGGACAAAATGTGAAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000096904.6 |
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| CDS-3UTR CCA 90 bp | CTTCACATTTTGTCCCTTGTCCATGATGCTCTTCAAGACAAATTCGGGATGTTTCCCAGAGTGGGGTCATaGAGCCCAATCCAAGTGTAT | + |
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Preference number: 4 (lower is better) Translates to: LHILSLVHDALQDKFGMFPRVGS*SPIQVY Trigger: ATACACTTGGATTGGGCTCCATGACCCCACTCTGGG...AAACATCCCGAATTTGTCTTGAAGAGCATCATGGACAAGGGACAAAATGTGAAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000096904.6 |
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| CDS-3UTR TCA 90 bp | TTCACATTTTGTCCCTTGTCCATGATGCTCTTCAAGACAAATTCGGGATGTTTGCATGGAGGACAAGAATaGAGCCTCAGCGCTATTGAG | + |
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Preference number: 4 (lower is better) Translates to: FTFCPLSMMLFKTNSGCLHGGQE*SLSAIE Trigger: CTCAATAGCGCTGAGGCTTCATTCTTGTCCTCCATG...CAAACATCCCGAATTTGTCTTGAAGAGCATCATGGACAAGGGACAAAATGTGAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000096904.6 |
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| CDS-3UTR CCA 90 bp | GTGAGTCTTCACATTTTGTCCCTTGTCCATGATGCTCTTCAAGACAAATTCGGGCTGTTCTCTTCACCATaGAGGACAAGAATGAAGCCT | + |
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Preference number: 4 (lower is better) Translates to: VSLHILSLVHDALQDKFGLFSSP*RTRMKP Trigger: AGGCTTCATTCTTGTCCTCCATGGTGAAGAGAACAG...CCCGAATTTGTCTTGAAGAGCATCATGGACAAGGGACAAAATGTGAAGACTCAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000096904.6 |
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| CDS-3UTR CCA 90 bp | TTCACATTTTGTCCCTTGTCCATGATGCTCTTCAAGACAAATTCGGGATGTTTGATCAAACCAGGTCTGTaGTATCTGAAACAAGGCATA | + |
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Preference number: 4 (lower is better) Translates to: FTFCPLSMMLFKTNSGCLIKPGL*YLKQGI Trigger: TATGCCTTGTTTCAGATACCACAGACCTGGTTTGAT...CAAACATCCCGAATTTGTCTTGAAGAGCATCATGGACAAGGGACAAAATGTGAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000096904.6 |
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| CDS TCA 90 bp | CTGTTCTCTTCACCATGGAGGACAAGAATGAAGCCTCAGCGCTATTaGGCACAGATACGAGGTGTCCTCCAGGCCTCTTTTGGCAGGCCA | + |
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Preference number: 5 (lower is better) Translates to: LFSSPWRTRMKPQRY*AQIRGVLQASFGRP Trigger: TGGCCTGCCAAAAGAGGCCTGGAGGACACCTCGTATCTGTGCTCAATAGCGCTGAGGCTTCATTCTTGTCCTCCATGGTGAAGAGAACAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000096904.6 ENSMUST00000203266.2 ENSMUST00000204873.3 |
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| CDS GCA 90 bp | CATCACGTCATTGTTACTCCATTCCCATCCACCTCCATTGGGTTCTaGACCCAGAGTGGGGTCATGGAGCCCAATCCAAGTGTATTGGTA | + |
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Preference number: 5 (lower is better) Translates to: HHVIVTPFPSTSIGF*TQSGVMEPNPSVLV Trigger: TACCAATACACTTGGATTGGGCTCCATGACCCCACTCTGGGTGCAGAACCCAATGGAGGTGGATGGGAATGGAGTAACAATGACGTGATG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000096904.6 ENSMUST00000203266.2 ENSMUST00000204873.3 |
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| CDS TCA 90 bp | GTATTGGTAGCTGTTTCCTGTTCTCTTCACCATGGAGGACAAGAATaGAGCCTCAGCGCTATTGAGCACAGATACGAGGTGTCCTCCAGG | + |
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Preference number: 5 (lower is better) Translates to: VLVAVSCSLHHGGQE*SLSAIEHRYEVSSR Trigger: CCTGGAGGACACCTCGTATCTGTGCTCAATAGCGCTGAGGCTTCATTCTTGTCCTCCATGGTGAAGAGAACAGGAAACAGCTACCAATAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000096904.6 ENSMUST00000203266.2 ENSMUST00000204873.3 |
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| CDS-3UTR CAA 90 bp | CTTCACATTTTGTCCCTTGTCCATGATGCTCTTCAAGACAAATTCGGGATGTTTTCCTCCAGGCCTCTTTaGGCAGGCCAGTTCTGCATC | + |
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Preference number: 5 (lower is better) Translates to: LHILSLVHDALQDKFGMFSSRPL*AGQFCI Trigger: GATGCAGAACTGGCCTGCCAAAAGAGGCCTGGAGGA...AAACATCCCGAATTTGTCTTGAAGAGCATCATGGACAAGGGACAAAATGTGAAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000096904.6 |
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| CDS-3UTR CAA 90 bp | AGTCTTCACATTTTGTCCCTTGTCCATGATGCTCTTCAAGACAAATTCGGGATGGAAATCCAGAAGCTCTaGACAAGCTGCCACAGAAAG | + |
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Preference number: 5 (lower is better) Translates to: SLHILSLVHDALQDKFGMEIQKL*TSCHRK Trigger: CTTTCTGTGGCAGCTTGTCAAGAGCTTCTGGATTTC...CATCCCGAATTTGTCTTGAAGAGCATCATGGACAAGGGACAAAATGTGAAGACT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000096904.6 |
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| CDS GCA 72 bp | GCCATAAGCCTGGGAGCCCTTGGGGCAACTAATGCGTaGGGAGGGTATATTCTTCAGGGAGTCTTCACCTTG | + |
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Preference number: 6 (lower is better) Translates to: AISLGALGATNA*GGYILQGVFTL Trigger: CAAGGTGAAGACTCCCTGAAGAATATACCCTCCGCACGCATTAGTTGCCCCAAGGGCTCCCAGGCTTATGGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000096904.6 ENSMUST00000203266.2 ENSMUST00000204873.3 |
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| CDS CAA 90 bp | CCTGTTCTCTTCACCATGGAGGACAAGAATGAAGCCTCAGCGCTATaGAGCACAGATACGAGGTGTCCTCCAGGCCTCTTTTGGCAGGCC | + |
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Preference number: 6 (lower is better) Translates to: PVLFTMEDKNEASAL*STDTRCPPGLFWQA Trigger: GGCCTGCCAAAAGAGGCCTGGAGGACACCTCGTATCTGTGCTCAATAGCGCTGAGGCTTCATTCTTGTCCTCCATGGTGAAGAGAACAGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000096904.6 ENSMUST00000203266.2 ENSMUST00000204873.3 |
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| CDS CCA 72 bp | TTGAGCACAGATACGAGGTGTCCTCCAGGCCTCTTTTaGCAGGCCAGTTCTGCATCAAACCAGGTCTGTGGT | + |
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Preference number: 6 (lower is better) Translates to: LSTDTRCPPGLF*QASSASNQVCG Trigger: ACCACAGACCTGGTTTGATGCAGAACTGGCCTGCCAAAAGAGGCCTGGAGGACACCTCGTATCTGTGCTCAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000096904.6 ENSMUST00000203266.2 ENSMUST00000204873.3 |
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| CDS CAA 72 bp | ATTGAGCACAGATACGAGGTGTCCTCCAGGCCTCTTTaGGCAGGCCAGTTCTGCATCAAACCAGGTCTGTGG | + |
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Preference number: 6 (lower is better) Translates to: IEHRYEVSSRPL*AGQFCIKPGLW Trigger: CCACAGACCTGGTTTGATGCAGAACTGGCCTGCCAAAAGAGGCCTGGAGGACACCTCGTATCTGTGCTCAAT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000096904.6 ENSMUST00000203266.2 ENSMUST00000204873.3 |
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| CDS CAA 72 bp | ATCACGTCATTGTTACTCCATTCCCATCCACCTCCATaGGGTTCTGCACCCAGAGTGGGGTCATGGAGCCCA | + |
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Preference number: 6 (lower is better) Translates to: ITSLLLHSHPPP*GSAPRVGSWSP Trigger: TGGGCTCCATGACCCCACTCTGGGTGCAGAACCCAATGGAGGTGGATGGGAATGGAGTAACAATGACGTGAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000096904.6 ENSMUST00000203266.2 ENSMUST00000204873.3 |
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| CDS GCA 72 bp | ATTGTTACTCCATTCCCATCCACCTCCATTGGGTTCTaGACCCAGAGTGGGGTCATGGAGCCCAATCCAAGT | + |
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Preference number: 6 (lower is better) Translates to: IVTPFPSTSIGF*TQSGVMEPNPS Trigger: ACTTGGATTGGGCTCCATGACCCCACTCTGGGTGCAGAACCCAATGGAGGTGGATGGGAATGGAGTAACAAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000096904.6 ENSMUST00000203266.2 ENSMUST00000204873.3 |
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| CDS CAA 90 bp | CTCAGCGCTATTGAGCACAGATACGAGGTGTCCTCCAGGCCTCTTTaGGCAGGCCAGTTCTGCATCAAACCAGGTCTGTGGTATCTGAAA | + |
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Preference number: 6 (lower is better) Translates to: LSAIEHRYEVSSRPL*AGQFCIKPGLWYLK Trigger: TTTCAGATACCACAGACCTGGTTTGATGCAGAACTGGCCTGCCAAAAGAGGCCTGGAGGACACCTCGTATCTGTGCTCAATAGCGCTGAG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000096904.6 ENSMUST00000203266.2 ENSMUST00000204873.3 |
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| CDS TCA 72 bp | TCACCATGGAGGACAAGAATGAAGCCTCAGCGCTATTaGGCACAGATACGAGGTGTCCTCCAGGCCTCTTTT | + |
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Preference number: 6 (lower is better) Translates to: SPWRTRMKPQRY*AQIRGVLQASF Trigger: AAAAGAGGCCTGGAGGACACCTCGTATCTGTGCTCAATAGCGCTGAGGCTTCATTCTTGTCCTCCATGGTGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000096904.6 ENSMUST00000203266.2 ENSMUST00000204873.3 |
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| CDS CAA 72 bp | TTCACCATGGAGGACAAGAATGAAGCCTCAGCGCTATaGAGCACAGATACGAGGTGTCCTCCAGGCCTCTTT | + |
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Preference number: 6 (lower is better) Translates to: FTMEDKNEASAL*STDTRCPPGLF Trigger: AAAGAGGCCTGGAGGACACCTCGTATCTGTGCTCAATAGCGCTGAGGCTTCATTCTTGTCCTCCATGGTGAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000096904.6 ENSMUST00000203266.2 ENSMUST00000204873.3 |
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| CDS TCA 72 bp | GCTGTTTCCTGTTCTCTTCACCATGGAGGACAAGAATaGAGCCTCAGCGCTATTGAGCACAGATACGAGGTG | + |
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Preference number: 6 (lower is better) Translates to: AVSCSLHHGGQE*SLSAIEHRYEV Trigger: CACCTCGTATCTGTGCTCAATAGCGCTGAGGCTTCATTCTTGTCCTCCATGGTGAAGAGAACAGGAAACAGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000096904.6 ENSMUST00000203266.2 ENSMUST00000204873.3 |
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| CDS CAA 72 bp | ATGTCATATCTCTCCATTTTAGAAATCCAGAAGCTCTaGACAAGCTGCCACAGAAAGCACGGTCTAAGGCAG | + |
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Preference number: 6 (lower is better) Translates to: MSYLSILEIQKL*TSCHRKHGLRQ Trigger: CTGCCTTAGACCGTGCTTTCTGTGGCAGCTTGTCAAGAGCTTCTGGATTTCTAAAATGGAGAGATATGACAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000096904.6 |
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