Pregenerated sensors for REG3A (Mus musculus)
Ensembl gene IDs: ENSMUSG00000079516Ensembl transcript IDs: ENSMUST00000101272.3
Found 20 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR TCA 90 bp | GCAAGATTGCAAAGCAGGAACTATATTGAAAAGCCTGAAGTAAGGGGAAGGAGATCCAGGAAATACTGTTaGGGACCAGGTGAGGCAGCA | + |
|
Preference number: 4 (lower is better) Translates to: ARLQSRNYIEKPEVRGRRSRKYC*GPGEAA Trigger: TGCTGCCTCACCTGGTCCTCAACAGTATTTCCTGGA...TCTCCTTCCCCTTACTTCAGGCTTTTCAATATAGTTCCTGCTTTGCAATCTTGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000101272.3 |
||
| CDS-3UTR TCA 90 bp | ATAAGTCTGATGCACAACTGTAAAGCAAGTACAGCCTTGCCGGGTGAATTCTTGCCTCCATTGGGTTGTTaGCCCATTGTTGGATCATGG | + |
|
Preference number: 4 (lower is better) Translates to: ISLMHNCKASTALPGEFLPPLGC*PIVGSW Trigger: CCATGATCCAACAATGGGTCAACAACCCAATGGAGG...CAAGAATTCACCCGGCAAGGCTGTACTTGCTTTACAGTTGTGCATCAGACTTAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000101272.3 |
||
| CDS-3UTR TCA 90 bp | ATAAGTCTGATGCACAACTGTAAAGCAAGTACAGCCTTGCCGGGTGAATTCTTGCAGACCAGATCTGCTTaGAACCAGGATTTAGGTGTC | + |
|
Preference number: 4 (lower is better) Translates to: ISLMHNCKASTALPGEFLQTRSA*NQDLGV Trigger: GACACCTAAATCCTGGTTTCAAGCAGATCTGGTCTG...CAAGAATTCACCCGGCAAGGCTGTACTTGCTTTACAGTTGTGCATCAGACTTAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000101272.3 |
||
| CDS-3UTR GCA 90 bp | AGTCTGATGCACAACTGTAAAGCAAGTACAGCCTTGCCGGGTGAATTCTTGTATCTGGCAGACCAGATCTaGTTGAAACCAGGATTTAGG | + |
|
Preference number: 4 (lower is better) Translates to: SLMHNCKASTALPGEFLYLADQI*LKPGFR Trigger: CCTAAATCCTGGTTTCAAGCAGATCTGGTCTGCCAG...ATACAAGAATTCACCCGGCAAGGCTGTACTTGCTTTACAGTTGTGCATCAGACT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000101272.3 |
||
| CDS-3UTR CCA 90 bp | AGAGGACAGAAAACCAGAATAAGTCTGATGCACAACTGTAAAGCAAGTACAGCCGAGGGCACTTCCTTCTaGAAGTCTTCACCTTGTACC | + |
|
Preference number: 4 (lower is better) Translates to: RGQKTRISLMHNCKASTAEGTSF*KSSPCT Trigger: GGTACAAGGTGAAGACTTCCAGAAGGAAGTGCCCTC...GGCTGTACTTGCTTTACAGTTGTGCATCAGACTTATTCTGGTTTTCTGTCCTCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000101272.3 |
||
| CDS-3UTR CCA 90 bp | AGTCTGATGCACAACTGTAAAGCAAGTACAGCCTTGCCGGGTGAATTCTTGTATTTGTTGACCCATTGTTaGATCATGGAGCCCAATCCA | + |
|
Preference number: 4 (lower is better) Translates to: SLMHNCKASTALPGEFLYLLTHC*IMEPNP Trigger: TGGATTGGGCTCCATGATCCAACAATGGGTCAACAA...ATACAAGAATTCACCCGGCAAGGCTGTACTTGCTTTACAGTTGTGCATCAGACT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000101272.3 |
||
| CDS-3UTR TCA 90 bp | GCAAGATTGCAAAGCAGGAACTATATTGAAAAGCCTGAAGTAAGGGGAAGGAGATCTTCACCTTGTACCTaGAATACAAACAACAGGCAG | + |
|
Preference number: 4 (lower is better) Translates to: ARLQSRNYIEKPEVRGRRSSPCT*NTNNRQ Trigger: CTGCCTGTTGTTTGTATTTCAGGTACAAGGTGAAGA...TCTCCTTCCCCTTACTTCAGGCTTTTCAATATAGTTCCTGCTTTGCAATCTTGC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000101272.3 |
||
| 3UTR CAA 72 bp | ATAAGTCTGATGCACAACTGTAAAGCAAGTACAGCCTaGCCGGGTGAATTCTTGTATTTCATCCCTTGTCAT | + |
|
Preference number: 4 (lower is better) Translates to: ISLMHNCKASTA*PGEFLYFIPCH Trigger: ATGACAAGGGATGAAATACAAGAATTCACCCGGCAAGGCTGTACTTGCTTTACAGTTGTGCATCAGACTTAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000101272.3 |
||
| CDS CCA 90 bp | GCAGTGGGAGCGATAAGCCTTGTAACCCATGGGGCAGCTGGTACGTaGAGAGGGCACTTCCTTCTGGAAGTCTTCACCTTGTACCTGAAA | + |
|
Preference number: 5 (lower is better) Translates to: AVGAISLVTHGAAGT*RGHFLLEVFTLYLK Trigger: TTTCAGGTACAAGGTGAAGACTTCCAGAAGGAAGTGCCCTCTCCACGTACCAGCTGCCCCATGGGTTACAAGGCTTATCGCTCCCACTGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000101272.3 |
||
| CDS TCA 90 bp | TCTCCCCACTTCAGAAACCCTGAACTTGCTGTCAGACTCCCACAGTaGCCACGGTTGACAGTAGAGGAAGGATCCCCATCCCAGTTAAGA | + |
|
Preference number: 5 (lower is better) Translates to: SPHFRNPELAVRLPQ*PRLTVEEGSPSQLR Trigger: TCTTAACTGGGATGGGGATCCTTCCTCTACTGTCAACCGTGGTCACTGTGGGAGTCTGACAGCAAGTTCAGGGTTTCTGAAGTGGGGAGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000101272.3 |
||
| CDS TCA 90 bp | CACAAAGGAAGCCTCACCTCCACTAAGAATAGACACGAGATGTCCTaGGGGTCTCTTCTGGCAGACCAGATCTGCTTGAAACCAGGATTT | + |
|
Preference number: 5 (lower is better) Translates to: HKGSLTSTKNRHEMS*GSLLADQICLKPGF Trigger: AAATCCTGGTTTCAAGCAGATCTGGTCTGCCAGAAGAGACCCTCAGGACATCTCGTGTCTATTCTTAGTGGAGGTGAGGCTTCCTTTGTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000101272.3 |
||
| CDS-3UTR CAA 90 bp | AGTCTGATGCACAACTGTAAAGCAAGTACAGCCTTGCCGGGTGAATTCTTGTATTCAGAAACCCTGAACTaGCTGTCAGACTCCCACAGT | + |
|
Preference number: 5 (lower is better) Translates to: SLMHNCKASTALPGEFLYSETLN*LSDSHS Trigger: ACTGTGGGAGTCTGACAGCAAGTTCAGGGTTTCTGA...ATACAAGAATTCACCCGGCAAGGCTGTACTTGCTTTACAGTTGTGCATCAGACT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000101272.3 |
||
| CDS-3UTR CAA 90 bp | GCAAGATTGCAAAGCAGGAACTATATTGAAAAGCCTGAAGTAAGGGGAAGGAGAGTTGTTGACCCATTGTaGGATCATGGAGCCCAATCC | + |
|
Preference number: 5 (lower is better) Translates to: ARLQSRNYIEKPEVRGRRVVDPL*DHGAQS Trigger: GGATTGGGCTCCATGATCCAACAATGGGTCAACAAC...TCTCCTTCCCCTTACTTCAGGCTTTTCAATATAGTTCCTGCTTTGCAATCTTGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000101272.3 |
||
| CDS-3UTR CAA 90 bp | AGAGGACAGAAAACCAGAATAAGTCTGATGCACAACTGTAAAGCAAGTACAGCCGCAGACCAGATCTGCTaGAAACCAGGATTTAGGTGT | + |
|
Preference number: 5 (lower is better) Translates to: RGQKTRISLMHNCKASTAADQIC*KPGFRC Trigger: ACACCTAAATCCTGGTTTCAAGCAGATCTGGTCTGC...GGCTGTACTTGCTTTACAGTTGTGCATCAGACTTATTCTGGTTTTCTGTCCTCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000101272.3 |
||
| CDS CCA 72 bp | GCGATAAGCCTTGTAACCCATGGGGCAGCTGGTACGTaGAGAGGGCACTTCCTTCTGGAAGTCTTCACCTTG | + |
|
Preference number: 6 (lower is better) Translates to: AISLVTHGAAGT*RGHFLLEVFTL Trigger: CAAGGTGAAGACTTCCAGAAGGAAGTGCCCTCTCCACGTACCAGCTGCCCCATGGGTTACAAGGCTTATCGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000101272.3 |
||
| CDS CCA 72 bp | AGTGGGAGCGATAAGCCTTGTAACCCATGGGGCAGCTaGTACGTGGAGAGGGCACTTCCTTCTGGAAGTCTT | + |
|
Preference number: 6 (lower is better) Translates to: SGSDKPCNPWGS*YVERALPSGSL Trigger: AAGACTTCCAGAAGGAAGTGCCCTCTCCACGTACCAGCTGCCCCATGGGTTACAAGGCTTATCGCTCCCACT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000101272.3 |
||
| CDS TCA 72 bp | TTCAGAAACCCTGAACTTGCTGTCAGACTCCCACAGTaGCCACGGTTGACAGTAGAGGAAGGATCCCCATCC | + |
|
Preference number: 6 (lower is better) Translates to: FRNPELAVRLPQ*PRLTVEEGSPS Trigger: GGATGGGGATCCTTCCTCTACTGTCAACCGTGGTCACTGTGGGAGTCTGACAGCAAGTTCAGGGTTTCTGAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000101272.3 |
||
| CDS CCA 72 bp | GCACATCGGAGTTACTCCACTCCCATCCACCTCCATTaGGTTGTTGACCCATTGTTGGATCATGGAGCCCAA | + |
|
Preference number: 6 (lower is better) Translates to: AHRSYSTPIHLH*VVDPLLDHGAQ Trigger: TTGGGCTCCATGATCCAACAATGGGTCAACAACCCAATGGAGGTGGATGGGAGTGGAGTAACTCCGATGTGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000101272.3 |
||
| CDS TCA 72 bp | GAGGGCACTTCCTTCTGGAAGTCTTCACCTTGTACCTaGAATACAAACAACAGGCAGGAGAGCAGCATCCAG | + |
|
Preference number: 6 (lower is better) Translates to: EGTSFWKSSPCT*NTNNRQESSIQ Trigger: CTGGATGCTGCTCTCCTGCCTGTTGTTTGTATTTCAGGTACAAGGTGAAGACTTCCAGAAGGAAGTGCCCTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000101272.3 |
||
| CDS TCA 72 bp | AGCCTCACCTCCACTAAGAATAGACACGAGATGTCCTaGGGGTCTCTTCTGGCAGACCAGATCTGCTTGAAA | + |
|
Preference number: 6 (lower is better) Translates to: SLTSTKNRHEMS*GSLLADQICLK Trigger: TTTCAAGCAGATCTGGTCTGCCAGAAGAGACCCTCAGGACATCTCGTGTCTATTCTTAGTGGAGGTGAGGCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000101272.3 |
||