RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for REEP6 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000035504

Ensembl transcript IDs: ENSMUST00000040081.7, ENSMUST00000105354.8, ENSMUST00000105355.8, ENSMUST00000105357.2, ENSMUST00000105358.8, ENSMUST00000186864.7

Found 224 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GTCCCAAGGTCCGGCCTGCTGGCTGGGAGGCACCTCCCGAGCGCATaGGCAGCTGAGCGGAGCCCAGAGTCCCACTGGGCAGTCGGGCAC +
Preference number: 1 (lower is better)
Translates to: VPRSGLLAGRHLPSA*AAERSPESHWAVGH
Trigger: GTGCCCGACTGCCCAGTGGGACTCTGGGCTCCGCTCAGCTGCCCATGCGCTCGGGAGGTGCCTCCCAGCCAGCAGGCCGGACCTTGGGAC
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000105354.8
ENSMUST00000105355.8
ENSMUST00000186864.7
3UTR GCA 90 bp TCCCGTGTGGCGGCCTGTTGTGCGATTGTGTCCCAAGGTCCGGCCTaGTGGCTGGGAGGCACCTCCCGAGCGCATGGGCAGCTGAGCGGA +
Preference number: 1 (lower is better)
Translates to: SRVAACCAIVSQGPA*WLGGTSRAHGQLSG
Trigger: TCCGCTCAGCTGCCCATGCGCTCGGGAGGTGCCTCCCAGCCAGCAGGCCGGACCTTGGGACACAATCGCACAACAGGCCGCCACACGGGA
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000105354.8
ENSMUST00000105355.8
ENSMUST00000186864.7
3UTR CCA 90 bp CCCTGGGAGTCAAACTGCCCCGGCTGCGATGGGGCCGGGACTTGCTaGGAATCTGGGAGCCGCTGGCAGAAACAGTGGCCAGCTGACCCC +
Preference number: 1 (lower is better)
Translates to: PWESNCPGCDGAGTC*ESGSRWQKQWPADP
Trigger: GGGGTCAGCTGGCCACTGTTTCTGCCAGCGGCTCCCAGATTCCCAGCAAGTCCCGGCCCCATCGCAGCCGGGGCAGTTTGACTCCCAGGG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000040081.7
ENSMUST00000105354.8
ENSMUST00000105355.8
ENSMUST00000186864.7
3UTR GCA 90 bp GCCTCGGAGGGTGCTGAGGTGCCGGCCACCTGTGTCTTCTGGCCCTaGTTGTTCTTGGAACCTGCGTCCCCTGGCTCCACAGGAGCCTTG +
Preference number: 1 (lower is better)
Translates to: ASEGAEVPATCVFWP*LFLEPASPGSTGAL
Trigger: CAAGGCTCCTGTGGAGCCAGGGGACGCAGGTTCCAAGAACAAGCAGGGCCAGAAGACACAGGTGGCCGGCACCTCAGCACCCTCCGAGGC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000105354.8
ENSMUST00000105355.8
ENSMUST00000186864.7
3UTR TCA 90 bp GCCAGATGTGGCAAAAGCCAGCAGTGTCTGGGGCAACGCAGCTGGTaGCTATACTGTGGCCATTTACAGGTGATCTCCGTGGTAGACTCG +
Preference number: 1 (lower is better)
Translates to: ARCGKSQQCLGQRSW*LYCGHLQVISVVDS
Trigger: CGAGTCTACCACGGAGATCACCTGTAAATGGCCACAGTATAGTCACCAGCTGCGTTGCCCCAGACACTGCTGGCTTTTGCCACATCTGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000105354.8
ENSMUST00000105355.8
ENSMUST00000186864.7
3UTR GCA 90 bp TCTGGGAGTCTGAAGAACTGTCAGAGGCCTGGACATTATCAGCTGTaGGTTCCTTGTCATTGGCTGGGGAATCCGCACACAGACTGCCAG +
Preference number: 1 (lower is better)
Translates to: SGSLKNCQRPGHYQL*VPCHWLGNPHTDCQ
Trigger: CTGGCAGTCTGTGTGCGGATTCCCCAGCCAATGACAAGGAACGCACAGCTGATAATGTCCAGGCCTCTGACAGTTCTTCAGACTCCCAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040081.7
ENSMUST00000105354.8
ENSMUST00000105355.8
ENSMUST00000186864.7
3UTR GCA 90 bp ACTTGTTTTGATGACGGGCAGTTATTCGGTGAGGCTCTTGTACGGTaGTCAGGTGGTCTAGTGTTTCATGTGGCTCCTTGGGCAGGGGTC +
Preference number: 1 (lower is better)
Translates to: TCFDDGQLFGEALVR*SGGLVFHVAPWAGV
Trigger: GACCCCTGCCCAAGGAGCCACATGAAACACTAGACCACCTGAGCACCGTACAAGAGCCTCACCGAATAACTGCCCGTCATCAAAACAAGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000105354.8
ENSMUST00000105355.8
ENSMUST00000105357.2
ENSMUST00000105358.8
ENSMUST00000186864.7
3UTR-3UTR CCA 90 bp GCGGAGCCCAGAGTCCCACTGGGCAGTCGGGCACGCTGTGCAGCCCTGGGAGTCGGTCTCTCGGTCTTGTaGCCCACATGTGTGCAAGGG +
Preference number: 2 (lower is better)
Translates to: AEPRVPLGSRARCAALGVGLSVL*PTCVQG
Trigger: CCCTTGCACACATGTGGGCCACAAGACCGAGAGACC...GACTCCCAGGGCTGCACAGCGTGCCCGACTGCCCAGTGGGACTCTGGGCTCCGC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000105354.8
ENSMUST00000105355.8
ENSMUST00000186864.7
3UTR-3UTR CCA 90 bp GTGCCGGCCACCTGTGTCTTCTGGCCCTGCTTGTTCTTGGAACCTGCGTCCCCTCAAGGTCCGGCCTGCTaGCTGGGAGGCACCTCCCGA +
Preference number: 2 (lower is better)
Translates to: VPATCVFWPCLFLEPASPQGPAC*LGGTSR
Trigger: TCGGGAGGTGCCTCCCAGCCAGCAGGCCGGACCTTG...AGGGGACGCAGGTTCCAAGAACAAGCAGGGCCAGAAGACACAGGTGGCCGGCAC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000105354.8
ENSMUST00000105355.8
ENSMUST00000186864.7
3UTR CAA 90 bp TCGGAGGGTGCTGAGGTGCCGGCCACCTGTGTCTTCTGGCCCTGCTaGTTCTTGGAACCTGCGTCCCCTGGCTCCACAGGAGCCTTGCTG +
Preference number: 2 (lower is better)
Translates to: SEGAEVPATCVFWPC*FLEPASPGSTGALL
Trigger: CAGCAAGGCTCCTGTGGAGCCAGGGGACGCAGGTTCCAAGAACAAGCAGGGCCAGAAGACACAGGTGGCCGGCACCTCAGCACCCTCCGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000105354.8
ENSMUST00000105355.8
ENSMUST00000186864.7
3UTR-3UTR CCA 90 bp GCCCCGGCTGCGATGGGGCCGGGACTTGCTGGGAATCTGGGAGCCGCTGGCAGATGCGTTCCTTGTCATTaGCTGGGGAATCCGCACACA +
Preference number: 2 (lower is better)
Translates to: APAAMGPGLAGNLGAAGRCVPCH*LGNPHT
Trigger: TGTGTGCGGATTCCCCAGCCAATGACAAGGAACGCA...TCTGCCAGCGGCTCCCAGATTCCCAGCAAGTCCCGGCCCCATCGCAGCCGGGGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000040081.7
ENSMUST00000105354.8
ENSMUST00000105355.8
ENSMUST00000186864.7
3UTR-3UTR CCA 90 bp TCCCACTGGGCAGTCGGGCACGCTGTGCAGCCCTGGGAGTCAAACTGCCCCGGCTTGTGGTTGTGGTTGTaGTTGCGGTTGCGGTTGTGG +
Preference number: 2 (lower is better)
Translates to: SHWAVGHAVQPWESNCPGLWLWL*LRLRLW
Trigger: CCACAACCGCAACCGCAACCACAACCACAACCACAA...GCCGGGGCAGTTTGACTCCCAGGGCTGCACAGCGTGCCCGACTGCCCAGTGGGA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040081.7
ENSMUST00000105354.8
ENSMUST00000105355.8
ENSMUST00000186864.7
3UTR-3UTR CCA 90 bp AGAGTCCCACTGGGCAGTCGGGCACGCTGTGCAGCCCTGGGAGTCAAACTGCCCGGTCTCTCGGTCTTGTaGCCCACATGTGTGCAAGGG +
Preference number: 2 (lower is better)
Translates to: RVPLGSRARCAALGVKLPGLSVL*PTCVQG
Trigger: CCCTTGCACACATGTGGGCCACAAGACCGAGAGACC...GGGCAGTTTGACTCCCAGGGCTGCACAGCGTGCCCGACTGCCCAGTGGGACTCT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000105354.8
ENSMUST00000105355.8
ENSMUST00000186864.7
3UTR-3UTR CCA 90 bp AGAGTCCCACTGGGCAGTCGGGCACGCTGTGCAGCCCTGGGAGTCAAACTGCCCGACTTGCTGGGAATCTaGGAGCCGCTGGCAGAAACA +
Preference number: 2 (lower is better)
Translates to: RVPLGSRARCAALGVKLPDLLGI*EPLAET
Trigger: TGTTTCTGCCAGCGGCTCCCAGATTCCCAGCAAGTC...GGGCAGTTTGACTCCCAGGGCTGCACAGCGTGCCCGACTGCCCAGTGGGACTCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000040081.7
ENSMUST00000105354.8
ENSMUST00000105355.8
ENSMUST00000186864.7
3UTR-3UTR TCA 90 bp GGGACTTGCTGGGAATCTGGGAGCCGCTGGCAGAAACAGTGGCCAGCTGACCCCCTTTGTCTGGGAGTCTaGAGAACTGTCAGAGGCCTG +
Preference number: 2 (lower is better)
Translates to: GTCWESGSRWQKQWPADPLCLGV*RTVRGL
Trigger: CAGGCCTCTGACAGTTCTTCAGACTCCCAGACAAAG...GGGGTCAGCTGGCCACTGTTTCTGCCAGCGGCTCCCAGATTCCCAGCAAGTCCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000040081.7
ENSMUST00000105354.8
ENSMUST00000105355.8
ENSMUST00000186864.7
3UTR-3UTR TCA 90 bp CTGACGTGTGGAGGCCTGCCTGGTGGGTGTTTCATGTGGCACTGCGGCAGATGTCGGGCAGTTATTCGGTaGGGCTCTTGTACGGTGCTC +
Preference number: 2 (lower is better)
Translates to: LTCGGLPGGCFMWHCGRCRAVIR*GSCTVL
Trigger: GAGCACCGTACAAGAGCCTCACCGAATAACTGCCCG...ACATCTGCCGCAGTGCCACATGAAACACCCACCAGGCAGGCCTCCACACGTCAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000105354.8
ENSMUST00000105355.8
ENSMUST00000105357.2
ENSMUST00000105358.8
ENSMUST00000186864.7
3UTR-3UTR GCA 90 bp GCAGTCGGGCACGCTGTGCAGCCCTGGGAGTCAAACTGCCCCGGCTGCGATGGGATGGGTGTTTTGTGCTaGTGTGAGGGTGTTTCATGT +
Preference number: 2 (lower is better)
Translates to: AVGHAVQPWESNCPGCDGMGVLC*CEGVSC
Trigger: ACATGAAACACCCTCACAGCAGCACAAAACACCCAT...CCCATCGCAGCCGGGGCAGTTTGACTCCCAGGGCTGCACAGCGTGCCCGACTGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000105354.8
ENSMUST00000105355.8
ENSMUST00000186864.7
3UTR-3UTR CCA 90 bp CTGTGGCGGAGACCTGAGGGGTCTGGTGGTTTGTTCCCGTGTGGCGGCCTGTTGTGCGTTCCTTGTCATTaGCTGGGGAATCCGCACACA +
Preference number: 2 (lower is better)
Translates to: LWRRPEGSGGLFPCGGLLCVPCH*LGNPHT
Trigger: TGTGTGCGGATTCCCCAGCCAATGACAAGGAACGCA...CAACAGGCCGCCACACGGGAACAAACCACCAGACCCCTCAGGTCTCCGCCACAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000105354.8
ENSMUST00000105355.8
ENSMUST00000186864.7
3UTR-3UTR CCA 90 bp GCAGTCGGGCACGCTGTGCAGCCCTGGGAGTCAAACTGCCCCGGCTGCGATGGGAGTGGTGTCTTTGTCTaGGAGTCTGAAGAACTGTCA +
Preference number: 2 (lower is better)
Translates to: AVGHAVQPWESNCPGCDGSGVFV*ESEELS
Trigger: TGACAGTTCTTCAGACTCCCAGACAAAGACACCACT...CCCATCGCAGCCGGGGCAGTTTGACTCCCAGGGCTGCACAGCGTGCCCGACTGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040081.7
ENSMUST00000105354.8
ENSMUST00000105355.8
ENSMUST00000186864.7
3UTR-3UTR CCA 90 bp CCGGGACTTGCTGGGAATCTGGGAGCCGCTGGCAGAAACAGTGGCCAGCTGACCAGGCTGTGGTTGCAGTaGTGTCTTTGTCTGGGAGTC +
Preference number: 2 (lower is better)
Translates to: PGLAGNLGAAGRNSGQLTRLWLQ*CLCLGV
Trigger: GACTCCCAGACAAAGACACCACTGCAACCACAGCCT...GGTCAGCTGGCCACTGTTTCTGCCAGCGGCTCCCAGATTCCCAGCAAGTCCCGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000040081.7
ENSMUST00000105354.8
ENSMUST00000105355.8
ENSMUST00000186864.7
3UTR-3UTR CCA 90 bp GGGACTTGCTGGGAATCTGGGAGCCGCTGGCAGAAACAGTGGCCAGCTGACCCCTTGTGGTTGTGGTTGTaGTTGTGGTTGCGGTTGCGG +
Preference number: 2 (lower is better)
Translates to: GTCWESGSRWQKQWPADPLWLWL*LWLRLR
Trigger: CCGCAACCGCAACCACAACCACAACCACAACCACAA...GGGGTCAGCTGGCCACTGTTTCTGCCAGCGGCTCCCAGATTCCCAGCAAGTCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040081.7
ENSMUST00000105354.8
ENSMUST00000105355.8
ENSMUST00000186864.7
3UTR-3UTR CCA 90 bp AGGTCTGACGTGTGGAGGCCTGCCTGGTGGGTGTTTCATGTGGCACTGCGGCAGTTTCATGTGGCTCCTTaGGCAGGGGTCTCTCGGTCT +
Preference number: 2 (lower is better)
Translates to: RSDVWRPAWWVFHVALRQFHVAP*AGVSRS
Trigger: AGACCGAGAGACCCCTGCCCAAGGAGCCACATGAAA...CTGCCGCAGTGCCACATGAAACACCCACCAGGCAGGCCTCCACACGTCAGACCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000105354.8
ENSMUST00000105355.8
ENSMUST00000105357.2
ENSMUST00000105358.8
ENSMUST00000186864.7
3UTR-3UTR TCA 90 bp GCTGAGGTGCCGGCCACCTGTGTCTTCTGGCCCTGCTTGTTCTTGGAACCTGCGCTTTGTCTGGGAGTCTaGAGAACTGTCAGAGGCCTG +
Preference number: 2 (lower is better)
Translates to: AEVPATCVFWPCLFLEPALCLGV*RTVRGL
Trigger: CAGGCCTCTGACAGTTCTTCAGACTCCCAGACAAAG...CGCAGGTTCCAAGAACAAGCAGGGCCAGAAGACACAGGTGGCCGGCACCTCAGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000105354.8
ENSMUST00000105355.8
ENSMUST00000186864.7
3UTR-3UTR TCA 90 bp ACGCAGCTGGTGACTATACTGTGGCCATTTACAGGTGATCTCCGTGGTAGACTCGAGCGCATGGGCAGCTaGGCGGAGCCCAGAGTCCCA +
Preference number: 2 (lower is better)
Translates to: TQLVTILWPFTGDLRGRLERMGS*AEPRVP
Trigger: TGGGACTCTGGGCTCCGCTCAGCTGCCCATGCGCTC...GAGTCTACCACGGAGATCACCTGTAAATGGCCACAGTATAGTCACCAGCTGCGT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000105354.8
ENSMUST00000105355.8
ENSMUST00000186864.7
3UTR-3UTR CCA 90 bp GCTGAGGTGCCGGCCACCTGTGTCTTCTGGCCCTGCTTGTTCTTGGAACCTGCGAGGCTGTGGTTGCAGTaGTGTCTTTGTCTGGGAGTC +
Preference number: 2 (lower is better)
Translates to: AEVPATCVFWPCLFLEPARLWLQ*CLCLGV
Trigger: GACTCCCAGACAAAGACACCACTGCAACCACAGCCT...CGCAGGTTCCAAGAACAAGCAGGGCCAGAAGACACAGGTGGCCGGCACCTCAGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000105354.8
ENSMUST00000105355.8
ENSMUST00000186864.7
3UTR-3UTR CCA 90 bp GGGACTTGCTGGGAATCTGGGAGCCGCTGGCAGAAACAGTGGCCAGCTGACCCCTTGTGGCTGAGGCTGTaGTTGCAGTGGTGTCTTTGT +
Preference number: 2 (lower is better)
Translates to: GTCWESGSRWQKQWPADPLWLRL*LQWCLC
Trigger: ACAAAGACACCACTGCAACCACAGCCTCAGCCACAA...GGGGTCAGCTGGCCACTGTTTCTGCCAGCGGCTCCCAGATTCCCAGCAAGTCCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040081.7
ENSMUST00000105354.8
ENSMUST00000105355.8
ENSMUST00000186864.7
3UTR-3UTR CCA 90 bp GACGTGTGGAGGCCTGCCTGGTGGGTGTTTCATGTGGCACTGCGGCAGATGTTTGGTCTCTCGGTCTTGTaGCCCACATGTGTGCAAGGG +
Preference number: 2 (lower is better)
Translates to: DVWRPAWWVFHVALRQMFGLSVL*PTCVQG
Trigger: CCCTTGCACACATGTGGGCCACAAGACCGAGAGACC...AAACATCTGCCGCAGTGCCACATGAAACACCCACCAGGCAGGCCTCCACACGTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000105354.8
ENSMUST00000105355.8
ENSMUST00000105357.2
ENSMUST00000105358.8
ENSMUST00000186864.7
3UTR-3UTR CCA 90 bp GCCGGGACTTGCTGGGAATCTGGGAGCCGCTGGCAGAAACAGTGGCCAGCTGACTGTACGGTGCTCAGGTaGTCTAGTGTTTCATGTGGC +
Preference number: 2 (lower is better)
Translates to: AGTCWESGSRWQKQWPADCTVLR*SSVSCG
Trigger: GCCACATGAAACACTAGACCACCTGAGCACCGTACA...GTCAGCTGGCCACTGTTTCTGCCAGCGGCTCCCAGATTCCCAGCAAGTCCCGGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000105354.8
ENSMUST00000105355.8
ENSMUST00000186864.7
3UTR CAA 90 bp GGGACTGCCCATTCGTGGCCCGTGAGGGGCTTCCTACTGTCTTACTaGGGCTTGAGGTTCGGCGTTGTGGTTGTGGTTGTGGTTGTGGTT +
Preference number: 2 (lower is better)
Translates to: GTAHSWPVRGFLLSY*GLRFGVVVVVVVVV
Trigger: AACCACAACCACAACCACAACCACAACGCCGAACCTCAAGCCCAAGTAAGACAGTAGGAAGCCCCTCACGGGCCACGAATGGGCAGTCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040081.7
ENSMUST00000105354.8
ENSMUST00000105355.8
ENSMUST00000186864.7
3UTR-3UTR GCA 90 bp AGCCCAGAGTCCCACTGGGCAGTCGGGCACGCTGTGCAGCCCTGGGAGTCAAACTTCATGGGTGTTTTGTaGTGCTGTGAGGGTGTTTCA +
Preference number: 2 (lower is better)
Translates to: SPESHWAVGHAVQPWESNFMGVL*CCEGVS
Trigger: TGAAACACCCTCACAGCAGCACAAAACACCCATGAA...GTTTGACTCCCAGGGCTGCACAGCGTGCCCGACTGCCCAGTGGGACTCTGGGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000105354.8
ENSMUST00000105355.8
ENSMUST00000186864.7
3UTR-3UTR CCA 90 bp CTGACGTGTGGAGGCCTGCCTGGTGGGTGTTTCATGTGGCACTGCGGCAGATGTTGCGTTCCTTGTCATTaGCTGGGGAATCCGCACACA +
Preference number: 2 (lower is better)
Translates to: LTCGGLPGGCFMWHCGRCCVPCH*LGNPHT
Trigger: TGTGTGCGGATTCCCCAGCCAATGACAAGGAACGCA...ACATCTGCCGCAGTGCCACATGAAACACCCACCAGGCAGGCCTCCACACGTCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000105354.8
ENSMUST00000105355.8
ENSMUST00000186864.7
3UTR-3UTR CCA 90 bp AGAGTCCCACTGGGCAGTCGGGCACGCTGTGCAGCCCTGGGAGTCAAACTGCCCAGTGGTGTCTTTGTCTaGGAGTCTGAAGAACTGTCA +
Preference number: 2 (lower is better)
Translates to: RVPLGSRARCAALGVKLPSGVFV*ESEELS
Trigger: TGACAGTTCTTCAGACTCCCAGACAAAGACACCACT...GGGCAGTTTGACTCCCAGGGCTGCACAGCGTGCCCGACTGCCCAGTGGGACTCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000040081.7
ENSMUST00000105354.8
ENSMUST00000105355.8
ENSMUST00000186864.7
3UTR-3UTR CCA 90 bp GACGTGTGGAGGCCTGCCTGGTGGGTGTTTCATGTGGCACTGCGGCAGATGTTTTTTCATGTGGCTCCTTaGGCAGGGGTCTCTCGGTCT +
Preference number: 2 (lower is better)
Translates to: DVWRPAWWVFHVALRQMFFHVAP*AGVSRS
Trigger: AGACCGAGAGACCCCTGCCCAAGGAGCCACATGAAA...AAACATCTGCCGCAGTGCCACATGAAACACCCACCAGGCAGGCCTCCACACGTC
58% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 5 transcripts:
ENSMUST00000105354.8
ENSMUST00000105355.8
ENSMUST00000105357.2
ENSMUST00000105358.8
ENSMUST00000186864.7
3UTR-3UTR GCA 90 bp CCGGGACTTGCTGGGAATCTGGGAGCCGCTGGCAGAAACAGTGGCCAGCTGACCATGGGTGTTTTGTGCTaGTGTGAGGGTGTTTCATGT +
Preference number: 2 (lower is better)
Translates to: PGLAGNLGAAGRNSGQLTMGVLC*CEGVSC
Trigger: ACATGAAACACCCTCACAGCAGCACAAAACACCCAT...GGTCAGCTGGCCACTGTTTCTGCCAGCGGCTCCCAGATTCCCAGCAAGTCCCGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000105354.8
ENSMUST00000105355.8
ENSMUST00000186864.7
3UTR-3UTR CCA 90 bp CCGGGACTTGCTGGGAATCTGGGAGCCGCTGGCAGAAACAGTGGCCAGCTGACCAGTGGTGTCTTTGTCTaGGAGTCTGAAGAACTGTCA +
Preference number: 2 (lower is better)
Translates to: PGLAGNLGAAGRNSGQLTSGVFV*ESEELS
Trigger: TGACAGTTCTTCAGACTCCCAGACAAAGACACCACT...GGTCAGCTGGCCACTGTTTCTGCCAGCGGCTCCCAGATTCCCAGCAAGTCCCGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000040081.7
ENSMUST00000105354.8
ENSMUST00000105355.8
ENSMUST00000186864.7
3UTR-3UTR CCA 90 bp AGGGTGTTTCATGTGGGGCTGTGTAAAAGGTGTCTCACTTGGGAGTCCACGGGCGGTCTCTCGGTCTTGTaGCCCACATGTGTGCAAGGG +
Preference number: 2 (lower is better)
Translates to: RVFHVGLCKRCLTWESTGGLSVL*PTCVQG
Trigger: CCCTTGCACACATGTGGGCCACAAGACCGAGAGACC...GCCCGTGGACTCCCAAGTGAGACACCTTTTACACAGCCCCACATGAAACACCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000105354.8
ENSMUST00000105355.8
ENSMUST00000105357.2
ENSMUST00000105358.8
ENSMUST00000186864.7
3UTR-3UTR CCA 90 bp GAGCCTGAGCGGGTGGTTTTATTGCACACCTTGGAGGAGAGATGTTACACGGGGTGGAGGCCTGCCTGGTaGGTGTTTCATGTGGCACTG +
Preference number: 2 (lower is better)
Translates to: EPERVVLLHTLEERCYTGWRPAW*VFHVAL
Trigger: CAGTGCCACATGAAACACCCACCAGGCAGGCCTCCA...CCCCGTGTAACATCTCTCCTCCAAGGTGTGCAATAAAACCACCCGCTCAGGCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000105354.8
ENSMUST00000105355.8
ENSMUST00000105357.2
ENSMUST00000105358.8
ENSMUST00000186864.7
3UTR-3UTR CCA 90 bp GGGTGTTTCATGTGGGGCTGTGTAAAAGGTGTCTCACTTGGGAGTCCACGGGCATGGAGGCCTGCCTGGTaGGTGTTTCATGTGGCACTG +
Preference number: 2 (lower is better)
Translates to: GCFMWGCVKGVSLGSPRAWRPAW*VFHVAL
Trigger: CAGTGCCACATGAAACACCCACCAGGCAGGCCTCCA...TGCCCGTGGACTCCCAAGTGAGACACCTTTTACACAGCCCCACATGAAACACCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000105354.8
ENSMUST00000105355.8
ENSMUST00000105357.2
ENSMUST00000105358.8
ENSMUST00000186864.7
3UTR-3UTR GCA 90 bp CTGTGGCCATTTACAGGTGATCTCCGTGGTAGACTCGGACAAATAATCCAGAGATGCGGAGGCTGTTGCTaGGGCTGCCGATCGGCCTGT +
Preference number: 2 (lower is better)
Translates to: LWPFTGDLRGRLGQIIQRCGGCC*GCRSAC
Trigger: ACAGGCCGATCGGCAGCCGCAGCAACAGCCTCCGCA...TCTCTGGATTATTTGTCCGAGTCTACCACGGAGATCACCTGTAAATGGCCACAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000105354.8
ENSMUST00000105355.8
ENSMUST00000186864.7
3UTR-3UTR CCA 90 bp GGGTGTTTCATGTGGGGCTGTGTAAAAGGTGTCTCACTTGGGAGTCCACGGGCATTTCATGTGGCTCCTTaGGCAGGGGTCTCTCGGTCT +
Preference number: 2 (lower is better)
Translates to: GCFMWGCVKGVSLGSPRAFHVAP*AGVSRS
Trigger: AGACCGAGAGACCCCTGCCCAAGGAGCCACATGAAA...TGCCCGTGGACTCCCAAGTGAGACACCTTTTACACAGCCCCACATGAAACACCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000105354.8
ENSMUST00000105355.8
ENSMUST00000105357.2
ENSMUST00000105358.8
ENSMUST00000186864.7
3UTR CAA 90 bp GTTGCGGTTGCGGTTGTGGCTGAGGCTGTGGTTGCAGTGGTGTCTTaGTCTGGGAGTCTGAAGAACTGTCAGAGGCCTGGACATTATCAG +
Preference number: 2 (lower is better)
Translates to: VAVAVVAEAVVAVVS*SGSLKNCQRPGHYQ
Trigger: CTGATAATGTCCAGGCCTCTGACAGTTCTTCAGACTCCCAGACAAAGACACCACTGCAACCACAGCCTCAGCCACAACCGCAACCGCAAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000040081.7
ENSMUST00000105354.8
ENSMUST00000105355.8
ENSMUST00000186864.7
3UTR-3UTR GCA 90 bp GAGGGTGCTGAGGTGCCGGCCACCTGTGTCTTCTGGCCCTGCTTGTTCTTGGAAATGGGTGTTTTGTGCTaGTGTGAGGGTGTTTCATGT +
Preference number: 2 (lower is better)
Translates to: EGAEVPATCVFWPCLFLEMGVLC*CEGVSC
Trigger: ACATGAAACACCCTCACAGCAGCACAAAACACCCAT...TTCCAAGAACAAGCAGGGCCAGAAGACACAGGTGGCCGGCACCTCAGCACCCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000105354.8
ENSMUST00000105355.8
ENSMUST00000186864.7
3UTR-3UTR CCA 90 bp GTTACACGGGGGACCACGGGATGGTGTTTCACGTGCACCTTCATGGGTGTTTTGTTGTGGTTGTGGTTGTaGTTGTGGTTGCGGTTGCGG +
Preference number: 2 (lower is better)
Translates to: VTRGTTGWCFTCTFMGVLLWLWL*LWLRLR
Trigger: CCGCAACCGCAACCACAACCACAACCACAACCACAA...CAAAACACCCATGAAGGTGCACGTGAAACACCATCCCGTGGTCCCCCGTGTAAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000105354.8
ENSMUST00000105355.8
ENSMUST00000186864.7
3UTR-3UTR CCA 90 bp CTGTGGCCATTTACAGGTGATCTCCGTGGTAGACTCGGACAAATAATCCAGAGAGCCTTGCTGCCAGCCTaGTTGGGGTCAGGGGATGTG +
Preference number: 2 (lower is better)
Translates to: LWPFTGDLRGRLGQIIQRALLPA*LGSGDV
Trigger: CACATCCCCTGACCCCAACCAGGCTGGCAGCAAGGC...TCTCTGGATTATTTGTCCGAGTCTACCACGGAGATCACCTGTAAATGGCCACAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000105354.8
ENSMUST00000105355.8
ENSMUST00000186864.7
3UTR-3UTR CCA 90 bp CGGGATGGTGTTTCACGTGCACCTTCATGGGTGTTTTGTGCTGCTGTGAGGGTGGAACTGTCAGAGGCCTaGACATTATCAGCTGTGCGT +
Preference number: 2 (lower is better)
Translates to: RDGVSRAPSWVFCAAVRVELSEA*TLSAVR
Trigger: ACGCACAGCTGATAATGTCCAGGCCTCTGACAGTTC...CACCCTCACAGCAGCACAAAACACCCATGAAGGTGCACGTGAAACACCATCCCG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000105354.8
ENSMUST00000105355.8
ENSMUST00000186864.7
3UTR-3UTR CCA 90 bp GTGAGGGTGTTTCATGTGGGGCTGTGTAAAAGGTGTCTCACTTGGGAGTCCACGTTGTGGTTGTGGTTGTaGTTGTGGTTGCGGTTGCGG +
Preference number: 2 (lower is better)
Translates to: VRVFHVGLCKRCLTWESTLWLWL*LWLRLR
Trigger: CCGCAACCGCAACCACAACCACAACCACAACCACAA...CGTGGACTCCCAAGTGAGACACCTTTTACACAGCCCCACATGAAACACCCTCAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000105354.8
ENSMUST00000105355.8
ENSMUST00000186864.7
3UTR-3UTR CCA 90 bp CCTGGTGGGTGTTTCATGTGGCACTGCGGCAGATGTTTGACTTGTTTTGATGACGGTCTCTCGGTCTTGTaGCCCACATGTGTGCAAGGG +
Preference number: 2 (lower is better)
Translates to: PGGCFMWHCGRCLTCFDDGLSVL*PTCVQG
Trigger: CCCTTGCACACATGTGGGCCACAAGACCGAGAGACC...GTCATCAAAACAAGTCAAACATCTGCCGCAGTGCCACATGAAACACCCACCAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000105354.8
ENSMUST00000105355.8
ENSMUST00000105357.2
ENSMUST00000105358.8
ENSMUST00000186864.7
3UTR-3UTR CCA 90 bp AGGGTGTTTCATGTGGGGCTGTGTAAAAGGTGTCTCACTTGGGAGTCCACGGGCTGTACGGTGCTCAGGTaGTCTAGTGTTTCATGTGGC +
Preference number: 2 (lower is better)
Translates to: RVFHVGLCKRCLTWESTGCTVLR*SSVSCG
Trigger: GCCACATGAAACACTAGACCACCTGAGCACCGTACA...GCCCGTGGACTCCCAAGTGAGACACCTTTTACACAGCCCCACATGAAACACCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000105354.8
ENSMUST00000105355.8
ENSMUST00000105357.2
ENSMUST00000105358.8
ENSMUST00000186864.7
3UTR-3UTR TCA 90 bp CTACTGTCTTACTTGGGCTTGAGGTTCGGCGTTGTGGTTGTGGTTGTGGTTGTGCTTTGTCTGGGAGTCTaGAGAACTGTCAGAGGCCTG +
Preference number: 2 (lower is better)
Translates to: LLSYLGLRFGVVVVVVVVLCLGV*RTVRGL
Trigger: CAGGCCTCTGACAGTTCTTCAGACTCCCAGACAAAG...CACAACCACAACCACAACCACAACGCCGAACCTCAAGCCCAAGTAAGACAGTAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000040081.7
ENSMUST00000105354.8
ENSMUST00000105355.8
ENSMUST00000186864.7
3UTR-3UTR CCA 90 bp CTACTGTCTTACTTGGGCTTGAGGTTCGGCGTTGTGGTTGTGGTTGTGGTTGTGTTGTGGTTGTGGTTGTaGTTGCGGTTGCGGTTGTGG +
Preference number: 2 (lower is better)
Translates to: LLSYLGLRFGVVVVVVVVLWLWL*LRLRLW
Trigger: CCACAACCGCAACCGCAACCACAACCACAACCACAA...CACAACCACAACCACAACCACAACGCCGAACCTCAAGCCCAAGTAAGACAGTAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000040081.7
ENSMUST00000105354.8
ENSMUST00000105355.8
ENSMUST00000186864.7
3UTR-3UTR CCA 90 bp CCTGGTGGGTGTTTCATGTGGCACTGCGGCAGATGTTTGACTTGTTTTGATGACTTTCATGTGGCTCCTTaGGCAGGGGTCTCTCGGTCT +
Preference number: 2 (lower is better)
Translates to: PGGCFMWHCGRCLTCFDDFHVAP*AGVSRS
Trigger: AGACCGAGAGACCCCTGCCCAAGGAGCCACATGAAA...GTCATCAAAACAAGTCAAACATCTGCCGCAGTGCCACATGAAACACCCACCAGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000105354.8
ENSMUST00000105355.8
ENSMUST00000105357.2
ENSMUST00000105358.8
ENSMUST00000186864.7
3UTR-3UTR GCA 90 bp GAGCCTGAGCGGGTGGTTTTATTGCACACCTTGGAGGAGAGATGTTACACGGGGATGGGTGTTTTGTGCTaGTGTGAGGGTGTTTCATGT +
Preference number: 2 (lower is better)
Translates to: EPERVVLLHTLEERCYTGMGVLC*CEGVSC
Trigger: ACATGAAACACCCTCACAGCAGCACAAAACACCCAT...CCCCGTGTAACATCTCTCCTCCAAGGTGTGCAATAAAACCACCCGCTCAGGCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000105354.8
ENSMUST00000105355.8
ENSMUST00000105357.2
ENSMUST00000105358.8
ENSMUST00000186864.7
3UTR-3UTR CCA 90 bp CTTCCTACTGTCTTACTTGGGCTTGAGGTTCGGCGTTGTGGTTGTGGTTGTGGTGAACTGTCAGAGGCCTaGACATTATCAGCTGTGCGT +
Preference number: 2 (lower is better)
Translates to: LPTVLLGLEVRRCGCGCGELSEA*TLSAVR
Trigger: ACGCACAGCTGATAATGTCCAGGCCTCTGACAGTTC...ACCACAACCACAACCACAACGCCGAACCTCAAGCCCAAGTAAGACAGTAGGAAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000040081.7
ENSMUST00000105354.8
ENSMUST00000105355.8
ENSMUST00000186864.7
3UTR-3UTR CCA 90 bp GGGTGTTTCATGTGGGGCTGTGTAAAAGGTGTCTCACTTGGGAGTCCACGGGCAAGTGGTGTCTTTGTCTaGGAGTCTGAAGAACTGTCA +
Preference number: 2 (lower is better)
Translates to: GCFMWGCVKGVSLGSPRASGVFV*ESEELS
Trigger: TGACAGTTCTTCAGACTCCCAGACAAAGACACCACT...TGCCCGTGGACTCCCAAGTGAGACACCTTTTACACAGCCCCACATGAAACACCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000105354.8
ENSMUST00000105355.8
ENSMUST00000186864.7
3UTR-3UTR CCA 90 bp CCTGGTGGGTGTTTCATGTGGCACTGCGGCAGATGTTTGACTTGTTTTGATGACAGGCTGTGGTTGCAGTaGTGTCTTTGTCTGGGAGTC +
Preference number: 2 (lower is better)
Translates to: PGGCFMWHCGRCLTCFDDRLWLQ*CLCLGV
Trigger: GACTCCCAGACAAAGACACCACTGCAACCACAGCCT...GTCATCAAAACAAGTCAAACATCTGCCGCAGTGCCACATGAAACACCCACCAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000105354.8
ENSMUST00000105355.8
ENSMUST00000186864.7
3UTR-3UTR CCA 90 bp CTACTGTCTTACTTGGGCTTGAGGTTCGGCGTTGTGGTTGTGGTTGTGGTTGTGTTGTGGCTGAGGCTGTaGTTGCAGTGGTGTCTTTGT +
Preference number: 2 (lower is better)
Translates to: LLSYLGLRFGVVVVVVVVLWLRL*LQWCLC
Trigger: ACAAAGACACCACTGCAACCACAGCCTCAGCCACAA...CACAACCACAACCACAACCACAACGCCGAACCTCAAGCCCAAGTAAGACAGTAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000040081.7
ENSMUST00000105354.8
ENSMUST00000105355.8
ENSMUST00000186864.7
3UTR-3UTR CCA 90 bp ACGCAGCTGGTGACTATACTGTGGCCATTTACAGGTGATCTCCGTGGTAGACTCTTGTGGCTGAGGCTGTaGTTGCAGTGGTGTCTTTGT +
Preference number: 2 (lower is better)
Translates to: TQLVTILWPFTGDLRGRLLWLRL*LQWCLC
Trigger: ACAAAGACACCACTGCAACCACAGCCTCAGCCACAA...GAGTCTACCACGGAGATCACCTGTAAATGGCCACAGTATAGTCACCAGCTGCGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000105354.8
ENSMUST00000105355.8
ENSMUST00000186864.7
3UTR-3UTR GCA 90 bp ACGCAGCTGGTGACTATACTGTGGCCATTTACAGGTGATCTCCGTGGTAGACTCAGCGGGTGGTTTTATTaGACACCTTGGAGGAGAGAT +
Preference number: 2 (lower is better)
Translates to: TQLVTILWPFTGDLRGRLSGWFY*TPWRRD
Trigger: ATCTCTCCTCCAAGGTGTGCAATAAAACCACCCGCT...GAGTCTACCACGGAGATCACCTGTAAATGGCCACAGTATAGTCACCAGCTGCGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000105354.8
ENSMUST00000105355.8
ENSMUST00000186864.7
3UTR-3UTR GCA 90 bp CCTGGTGGGTGTTTCATGTGGCACTGCGGCAGATGTTTGACTTGTTTTGATGACAGCGGGTGGTTTTATTaGACACCTTGGAGGAGAGAT +
Preference number: 2 (lower is better)
Translates to: PGGCFMWHCGRCLTCFDDSGWFY*TPWRRD
Trigger: ATCTCTCCTCCAAGGTGTGCAATAAAACCACCCGCT...GTCATCAAAACAAGTCAAACATCTGCCGCAGTGCCACATGAAACACCCACCAGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000105354.8
ENSMUST00000105355.8
ENSMUST00000105357.2
ENSMUST00000105358.8
ENSMUST00000186864.7
3UTR GCA 72 bp GCAGTCGGGCACGCTGTGCAGCCCTGGGAGTCAAACTaGCCCGGCTGCGATGGGGCCGGGACTTGCTGGGAA +
Preference number: 3 (lower is better)
Translates to: AVGHAVQPWESN*PGCDGAGTCWE
Trigger: TTCCCAGCAAGTCCCGGCCCCATCGCAGCCGGGGCAGTTTGACTCCCAGGGCTGCACAGCGTGCCCGACTGC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040081.7
ENSMUST00000105354.8
ENSMUST00000105355.8
ENSMUST00000186864.7
3UTR CCA 72 bp AGCGCATGGGCAGCTGAGCGGAGCCCAGAGTCCCACTaGGCAGTCGGGCACGCTGTGCAGCCCTGGGAGTCA +
Preference number: 3 (lower is better)
Translates to: SAWAAERSPESH*AVGHAVQPWES
Trigger: TGACTCCCAGGGCTGCACAGCGTGCCCGACTGCCCAGTGGGACTCTGGGCTCCGCTCAGCTGCCCATGCGCT
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000040081.7
ENSMUST00000105354.8
ENSMUST00000105355.8
ENSMUST00000186864.7
3UTR TCA 72 bp GTTGCTGCGGCTGCCGATCGGCCTGTGGCGGAGACCTaGGGGGTCTGGTGGTTTGTTCCCGTGTGGCGGCCT +
Preference number: 3 (lower is better)
Translates to: VAAAADRPVAET*GVWWFVPVWRP
Trigger: AGGCCGCCACACGGGAACAAACCACCAGACCCCTCAGGTCTCCGCCACAGGCCGATCGGCAGCCGCAGCAAC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000105354.8
ENSMUST00000105355.8
ENSMUST00000186864.7
3UTR CCA 72 bp GCCTGTTGTGCGATTGTGTCCCAAGGTCCGGCCTGCTaGCTGGGAGGCACCTCCCGAGCGCATGGGCAGCTG +
Preference number: 3 (lower is better)
Translates to: ACCAIVSQGPAC*LGGTSRAHGQL
Trigger: CAGCTGCCCATGCGCTCGGGAGGTGCCTCCCAGCCAGCAGGCCGGACCTTGGGACACAATCGCACAACAGGC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000105354.8
ENSMUST00000105355.8
ENSMUST00000186864.7
3UTR CCA 72 bp CTGCGGAGGCTGTTGCTGCGGCTGCCGATCGGCCTGTaGCGGAGACCTGAGGGGTCTGGTGGTTTGTTCCCG +
Preference number: 3 (lower is better)
Translates to: LRRLLLRLPIGL*RRPEGSGGLFP
Trigger: CGGGAACAAACCACCAGACCCCTCAGGTCTCCGCCACAGGCCGATCGGCAGCCGCAGCAACAGCCTCCGCAG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000105354.8
ENSMUST00000105355.8
ENSMUST00000186864.7
3UTR-3UTR CAA 90 bp GCCCCGGCTGCGATGGGGCCGGGACTTGCTGGGAATCTGGGAGCCGCTGGCAGATGGCTGAGGCTGTGGTaGCAGTGGTGTCTTTGTCTG +
Preference number: 3 (lower is better)
Translates to: APAAMGPGLAGNLGAAGRWLRLW*QWCLCL
Trigger: CAGACAAAGACACCACTGCAACCACAGCCTCAGCCA...TCTGCCAGCGGCTCCCAGATTCCCAGCAAGTCCCGGCCCCATCGCAGCCGGGGC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000040081.7
ENSMUST00000105354.8
ENSMUST00000105355.8
ENSMUST00000186864.7
3UTR-3UTR CAA 90 bp GCAGTCGGGCACGCTGTGCAGCCCTGGGAGTCAAACTGCCCCGGCTGCGATGGGTGGTTGTGGTTGTGGTaGCGGTTGCGGTTGTGGCTG +
Preference number: 3 (lower is better)
Translates to: AVGHAVQPWESNCPGCDGWLWLW*RLRLWL
Trigger: CAGCCACAACCGCAACCGCAACCACAACCACAACCA...CCCATCGCAGCCGGGGCAGTTTGACTCCCAGGGCTGCACAGCGTGCCCGACTGC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040081.7
ENSMUST00000105354.8
ENSMUST00000105355.8
ENSMUST00000186864.7
3UTR-3UTR CAA 90 bp GCTGAGGTGCCGGCCACCTGTGTCTTCTGGCCCTGCTTGTTCTTGGAACCTGCGGGCTCCACAGGAGCCTaGCTGCCAGCCTGGTTGGGG +
Preference number: 3 (lower is better)
Translates to: AEVPATCVFWPCLFLEPAGSTGA*LPAWLG
Trigger: CCCCAACCAGGCTGGCAGCAAGGCTCCTGTGGAGCC...CGCAGGTTCCAAGAACAAGCAGGGCCAGAAGACACAGGTGGCCGGCACCTCAGC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000105354.8
ENSMUST00000105355.8
ENSMUST00000186864.7
3UTR GCA 72 bp GGGTCTGGTGGTTTGTTCCCGTGTGGCGGCCTGTTGTaGGATTGTGTCCCAAGGTCCGGCCTGCTGGCTGGG +
Preference number: 3 (lower is better)
Translates to: GSGGLFPCGGLL*DCVPRSGLLAG
Trigger: CCCAGCCAGCAGGCCGGACCTTGGGACACAATCGCACAACAGGCCGCCACACGGGAACAAACCACCAGACCC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000105354.8
ENSMUST00000105355.8
ENSMUST00000186864.7
3UTR CCA 72 bp GATGGGGCCGGGACTTGCTGGGAATCTGGGAGCCGCTaGCAGAAACAGTGGCCAGCTGACCCCGGGATACAG +
Preference number: 3 (lower is better)
Translates to: DGAGTCWESGSR*QKQWPADPGIQ
Trigger: CTGTATCCCGGGGTCAGCTGGCCACTGTTTCTGCCAGCGGCTCCCAGATTCCCAGCAAGTCCCGGCCCCATC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000040081.7
ENSMUST00000105354.8
ENSMUST00000105355.8
ENSMUST00000186864.7
3UTR CCA 72 bp TCAAACTGCCCCGGCTGCGATGGGGCCGGGACTTGCTaGGAATCTGGGAGCCGCTGGCAGAAACAGTGGCCA +
Preference number: 3 (lower is better)
Translates to: SNCPGCDGAGTC*ESGSRWQKQWP
Trigger: TGGCCACTGTTTCTGCCAGCGGCTCCCAGATTCCCAGCAAGTCCCGGCCCCATCGCAGCCGGGGCAGTTTGA
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000040081.7
ENSMUST00000105354.8
ENSMUST00000105355.8
ENSMUST00000186864.7
3UTR TCA 72 bp GGAATCTGGGAGCCGCTGGCAGAAACAGTGGCCAGCTaGCCCCGGGATACAGATGCAGGGCCTGGGCTGACT +
Preference number: 3 (lower is better)
Translates to: GIWEPLAETVAS*PRDTDAGPGLT
Trigger: AGTCAGCCCAGGCCCTGCATCTGTATCCCGGGGTCAGCTGGCCACTGTTTCTGCCAGCGGCTCCCAGATTCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040081.7
ENSMUST00000105354.8
ENSMUST00000105355.8
ENSMUST00000186864.7
3UTR TCA 72 bp ATCAGAGTGACAGGGGACCAGTGCCTCGGAGGGTGCTaGGGTGCCGGCCACCTGTGTCTTCTGGCCCTGCTT +
Preference number: 3 (lower is better)
Translates to: IRVTGDQCLGGC*GAGHLCLLALL
Trigger: AAGCAGGGCCAGAAGACACAGGTGGCCGGCACCTCAGCACCCTCCGAGGCACTGGTCCCCTGTCACTCTGAT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000105354.8
ENSMUST00000105355.8
ENSMUST00000186864.7
3UTR GCA 72 bp AGTGACAGGGGACCAGTGCCTCGGAGGGTGCTGAGGTaGCGGCCACCTGTGTCTTCTGGCCCTGCTTGTTCT +
Preference number: 3 (lower is better)
Translates to: SDRGPVPRRVLR*RPPVSSGPACS
Trigger: AGAACAAGCAGGGCCAGAAGACACAGGTGGCCGGCACCTCAGCACCCTCCGAGGCACTGGTCCCCTGTCACT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000105354.8
ENSMUST00000105355.8
ENSMUST00000186864.7
3UTR CCA 72 bp CTTCTGGCCCTGCTTGTTCTTGGAACCTGCGTCCCCTaGCTCCACAGGAGCCTTGCTGCCAGCCTGGTTGGG +
Preference number: 3 (lower is better)
Translates to: LLALLVLGTCVP*LHRSLAASLVG
Trigger: CCCAACCAGGCTGGCAGCAAGGCTCCTGTGGAGCCAGGGGACGCAGGTTCCAAGAACAAGCAGGGCCAGAAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000105354.8
ENSMUST00000105355.8
ENSMUST00000186864.7
3UTR CCA 72 bp TGCCGGCCACCTGTGTCTTCTGGCCCTGCTTGTTCTTaGAACCTGCGTCCCCTGGCTCCACAGGAGCCTTGC +
Preference number: 3 (lower is better)
Translates to: CRPPVSSGPACS*NLRPLAPQEPC
Trigger: GCAAGGCTCCTGTGGAGCCAGGGGACGCAGGTTCCAAGAACAAGCAGGGCCAGAAGACACAGGTGGCCGGCA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000105354.8
ENSMUST00000105355.8
ENSMUST00000186864.7
3UTR-3UTR CAA 90 bp GCCGGGACTTGCTGGGAATCTGGGAGCCGCTGGCAGAAACAGTGGCCAGCTGACGTTTCATGTGGCTCCTaGGGCAGGGGTCTCTCGGTC +
Preference number: 3 (lower is better)
Translates to: AGTCWESGSRWQKQWPADVSCGS*GRGLSV
Trigger: GACCGAGAGACCCCTGCCCAAGGAGCCACATGAAAC...GTCAGCTGGCCACTGTTTCTGCCAGCGGCTCCCAGATTCCCAGCAAGTCCCGGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000105354.8
ENSMUST00000105355.8
ENSMUST00000186864.7
3UTR-3UTR CAA 90 bp TCCCACTGGGCAGTCGGGCACGCTGTGCAGCCCTGGGAGTCAAACTGCCCCGGCGAGCGGGTGGTTTTATaGCACACCTTGGAGGAGAGA +
Preference number: 3 (lower is better)
Translates to: SHWAVGHAVQPWESNCPGERVVL*HTLEER
Trigger: TCTCTCCTCCAAGGTGTGCAATAAAACCACCCGCTC...GCCGGGGCAGTTTGACTCCCAGGGCTGCACAGCGTGCCCGACTGCCCAGTGGGA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000105354.8
ENSMUST00000105355.8
ENSMUST00000186864.7
3UTR CCA 72 bp ACTTGCTGGGAATCTGGGAGCCGCTGGCAGAAACAGTaGCCAGCTGACCCCGGGATACAGATGCAGGGCCTG +
Preference number: 3 (lower is better)
Translates to: TCWESGSRWQKQ*PADPGIQMQGL
Trigger: CAGGCCCTGCATCTGTATCCCGGGGTCAGCTGGCCACTGTTTCTGCCAGCGGCTCCCAGATTCCCAGCAAGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040081.7
ENSMUST00000105354.8
ENSMUST00000105355.8
ENSMUST00000186864.7
3UTR-3UTR CAA 90 bp CTGTGGCGGAGACCTGAGGGGTCTGGTGGTTTGTTCCCGTGTGGCGGCCTGTTGTGGCTGAGGCTGTGGTaGCAGTGGTGTCTTTGTCTG +
Preference number: 3 (lower is better)
Translates to: LWRRPEGSGGLFPCGGLLWLRLW*QWCLCL
Trigger: CAGACAAAGACACCACTGCAACCACAGCCTCAGCCA...CAACAGGCCGCCACACGGGAACAAACCACCAGACCCCTCAGGTCTCCGCCACAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000105354.8
ENSMUST00000105355.8
ENSMUST00000186864.7
3UTR-3UTR CAA 90 bp AGAGTCCCACTGGGCAGTCGGGCACGCTGTGCAGCCCTGGGAGTCAAACTGCCCGAGCGGGTGGTTTTATaGCACACCTTGGAGGAGAGA +
Preference number: 3 (lower is better)
Translates to: RVPLGSRARCAALGVKLPERVVL*HTLEER
Trigger: TCTCTCCTCCAAGGTGTGCAATAAAACCACCCGCTC...GGGCAGTTTGACTCCCAGGGCTGCACAGCGTGCCCGACTGCCCAGTGGGACTCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000105354.8
ENSMUST00000105355.8
ENSMUST00000186864.7
3UTR CCA 72 bp TCCACGGGCAGGTCTGACGTGTGGAGGCCTGCCTGGTaGGTGTTTCATGTGGCACTGCGGCAGATGTTTGAC +
Preference number: 3 (lower is better)
Translates to: STGRSDVWRPAW*VFHVALRQMFD
Trigger: GTCAAACATCTGCCGCAGTGCCACATGAAACACCCACCAGGCAGGCCTCCACACGTCAGACCTGCCCGTGGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000105354.8
ENSMUST00000105355.8
ENSMUST00000105357.2
ENSMUST00000105358.8
ENSMUST00000186864.7
3UTR-3UTR CAA 90 bp GGGTGTTTCATGTGGGGCTGTGTAAAAGGTGTCTCACTTGGGAGTCCACGGGCAGTTTCATGTGGCTCCTaGGGCAGGGGTCTCTCGGTC +
Preference number: 3 (lower is better)
Translates to: GCFMWGCVKGVSLGSPRAVSCGS*GRGLSV
Trigger: GACCGAGAGACCCCTGCCCAAGGAGCCACATGAAAC...TGCCCGTGGACTCCCAAGTGAGACACCTTTTACACAGCCCCACATGAAACACCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000105354.8
ENSMUST00000105355.8
ENSMUST00000105357.2
ENSMUST00000105358.8
ENSMUST00000186864.7
3UTR-3UTR CAA 90 bp AGGGTGTTTCATGTGGGGCTGTGTAAAAGGTGTCTCACTTGGGAGTCCACGGGCGTTTCATGTGGCTCCTaGGGCAGGGGTCTCTCGGTC +
Preference number: 3 (lower is better)
Translates to: RVFHVGLCKRCLTWESTGVSCGS*GRGLSV
Trigger: GACCGAGAGACCCCTGCCCAAGGAGCCACATGAAAC...GCCCGTGGACTCCCAAGTGAGACACCTTTTACACAGCCCCACATGAAACACCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000105354.8
ENSMUST00000105355.8
ENSMUST00000105357.2
ENSMUST00000105358.8
ENSMUST00000186864.7
3UTR-3UTR CAA 90 bp GTGCCGGCCACCTGTGTCTTCTGGCCCTGCTTGTTCTTGGAACCTGCGTCCCCTACCTTCATGGGTGTTTaGTGCTGCTGTGAGGGTGTT +
Preference number: 3 (lower is better)
Translates to: VPATCVFWPCLFLEPASPTFMGV*CCCEGV
Trigger: AACACCCTCACAGCAGCACAAAACACCCATGAAGGT...AGGGGACGCAGGTTCCAAGAACAAGCAGGGCCAGAAGACACAGGTGGCCGGCAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000105354.8
ENSMUST00000105355.8
ENSMUST00000186864.7
3UTR GCA 72 bp GTTCCTTGTCATTGGCTGGGGAATCCGCACACAGACTaGCAGCAGACCTCCTCACTTGTGGTTCAGGAGTGG +
Preference number: 3 (lower is better)
Translates to: VPCHWLGNPHTD*QQTSSLVVQEW
Trigger: CCACTCCTGAACCACAAGTGAGGAGGTCTGCTGGCAGTCTGTGTGCGGATTCCCCAGCCAATGACAAGGAAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000105354.8
ENSMUST00000105355.8
ENSMUST00000186864.7
3UTR GCA 72 bp CTTGTGGCCCACATGTGTGCAAGGGTGGTGCTAGTATaGCAGATGTGGCAAAAGCCAGCAGTGTCTGGGGCA +
Preference number: 3 (lower is better)
Translates to: LVAHMCARVVLV*QMWQKPAVSGA
Trigger: TGCCCCAGACACTGCTGGCTTTTGCCACATCTGGCATACTAGCACCACCCTTGCACACATGTGGGCCACAAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000105354.8
ENSMUST00000105355.8
ENSMUST00000186864.7
3UTR CCA 72 bp GTGTTTCATGTGGGGCTGTGTAAAAGGTGTCTCACTTaGGAGTCCACGGGCAGGTCTGACGTGTGGAGGCCT +
Preference number: 3 (lower is better)
Translates to: VFHVGLCKRCLT*ESTGRSDVWRP
Trigger: AGGCCTCCACACGTCAGACCTGCCCGTGGACTCCCAAGTGAGACACCTTTTACACAGCCCCACATGAAACAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000105354.8
ENSMUST00000105355.8
ENSMUST00000105357.2
ENSMUST00000105358.8
ENSMUST00000186864.7
3UTR CCA 72 bp CACATGTGTGCAAGGGTGGTGCTAGTATGCCAGATGTaGCAAAAGCCAGCAGTGTCTGGGGCAACGCAGCTG +
Preference number: 3 (lower is better)
Translates to: HMCARVVLVCQM*QKPAVSGATQL
Trigger: CAGCTGCGTTGCCCCAGACACTGCTGGCTTTTGCCACATCTGGCATACTAGCACCACCCTTGCACACATGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000105354.8
ENSMUST00000105355.8
ENSMUST00000186864.7
3UTR-3UTR CAA 90 bp GCTGAGGTGCCGGCCACCTGTGTCTTCTGGCCCTGCTTGTTCTTGGAACCTGCGGTTTTATTGCACACCTaGGAGGAGAGATGTTACACG +
Preference number: 3 (lower is better)
Translates to: AEVPATCVFWPCLFLEPAVLLHT*EERCYT
Trigger: CGTGTAACATCTCTCCTCCAAGGTGTGCAATAAAAC...CGCAGGTTCCAAGAACAAGCAGGGCCAGAAGACACAGGTGGCCGGCACCTCAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000105354.8
ENSMUST00000105355.8
ENSMUST00000186864.7
3UTR GCA 72 bp TGTGGAGGCCTGCCTGGTGGGTGTTTCATGTGGCACTaGGGCAGATGTTTGACTTGTTTTGATGACGGGCAG +
Preference number: 3 (lower is better)
Translates to: CGGLPGGCFMWH*GRCLTCFDDGQ
Trigger: CTGCCCGTCATCAAAACAAGTCAAACATCTGCCGCAGTGCCACATGAAACACCCACCAGGCAGGCCTCCACA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000105354.8
ENSMUST00000105355.8
ENSMUST00000105357.2
ENSMUST00000105358.8
ENSMUST00000186864.7
3UTR CCA 72 bp CCTTGGAGGAGAGATGTTACACGGGGGACCACGGGATaGTGTTTCACGTGCACCTTCATGGGTGTTTTGTGC +
Preference number: 3 (lower is better)
Translates to: PWRRDVTRGTTG*CFTCTFMGVLC
Trigger: GCACAAAACACCCATGAAGGTGCACGTGAAACACCATCCCGTGGTCCCCCGTGTAACATCTCTCCTCCAAGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000105354.8
ENSMUST00000105355.8
ENSMUST00000105357.2
ENSMUST00000105358.8
ENSMUST00000186864.7
3UTR CCA 72 bp GCAGTGTCTGGGGCAACGCAGCTGGTGACTATACTGTaGCCATTTACAGGTGATCTCCGTGGTAGACTCGGA +
Preference number: 3 (lower is better)
Translates to: AVSGATQLVTIL*PFTGDLRGRLG
Trigger: TCCGAGTCTACCACGGAGATCACCTGTAAATGGCCACAGTATAGTCACCAGCTGCGTTGCCCCAGACACTGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000105354.8
ENSMUST00000105355.8
ENSMUST00000186864.7
3UTR-3UTR CAA 90 bp CTACTGTCTTACTTGGGCTTGAGGTTCGGCGTTGTGGTTGTGGTTGTGGTTGTGTGGTTGTGGTTGTGGTaGCGGTTGCGGTTGTGGCTG +
Preference number: 3 (lower is better)
Translates to: LLSYLGLRFGVVVVVVVVWLWLW*RLRLWL
Trigger: CAGCCACAACCGCAACCGCAACCACAACCACAACCA...CACAACCACAACCACAACCACAACGCCGAACCTCAAGCCCAAGTAAGACAGTAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000040081.7
ENSMUST00000105354.8
ENSMUST00000105355.8
ENSMUST00000186864.7
3UTR-3UTR CAA 90 bp GGGAGTCTGAAGAACTGTCAGAGGCCTGGACATTATCAGCTGTGCGTTCCTTGTAGCAGACCTCCTCACTaGTGGTTCAGGAGTGGGGTC +
Preference number: 3 (lower is better)
Translates to: GSLKNCQRPGHYQLCVPCSRPPH*WFRSGV
Trigger: GACCCCACTCCTGAACCACAAGTGAGGAGGTCTGCT...ACAAGGAACGCACAGCTGATAATGTCCAGGCCTCTGACAGTTCTTCAGACTCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000105354.8
ENSMUST00000105355.8
ENSMUST00000186864.7
3UTR-3UTR CAA 90 bp ACGCAGCTGGTGACTATACTGTGGCCATTTACAGGTGATCTCCGTGGTAGACTCAGCAGACCTCCTCACTaGTGGTTCAGGAGTGGGGTC +
Preference number: 3 (lower is better)
Translates to: TQLVTILWPFTGDLRGRLSRPPH*WFRSGV
Trigger: GACCCCACTCCTGAACCACAAGTGAGGAGGTCTGCT...GAGTCTACCACGGAGATCACCTGTAAATGGCCACAGTATAGTCACCAGCTGCGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000105354.8
ENSMUST00000105355.8
ENSMUST00000186864.7
3UTR-3UTR CAA 90 bp CTACTGTCTTACTTGGGCTTGAGGTTCGGCGTTGTGGTTGTGGTTGTGGTTGTGTGGTTGTGGTTGTGGTaGTGGTTGCGGTTGCGGTTG +
Preference number: 3 (lower is better)
Translates to: LLSYLGLRFGVVVVVVVVWLWLW*WLRLRL
Trigger: CAACCGCAACCGCAACCACAACCACAACCACAACCA...CACAACCACAACCACAACCACAACGCCGAACCTCAAGCCCAAGTAAGACAGTAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000040081.7
ENSMUST00000105354.8
ENSMUST00000105355.8
ENSMUST00000186864.7
3UTR TCA 72 bp CTGGTGGGTGTTTCATGTGGCACTGCGGCAGATGTTTaGCTTGTTTTGATGACGGGCAGTTATTCGGTGAGG +
Preference number: 3 (lower is better)
Translates to: LVGVSCGTAADV*LVLMTGSYSVR
Trigger: CCTCACCGAATAACTGCCCGTCATCAAAACAAGTCAAACATCTGCCGCAGTGCCACATGAAACACCCACCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000105354.8
ENSMUST00000105355.8
ENSMUST00000105357.2
ENSMUST00000105358.8
ENSMUST00000186864.7
3UTR CCA 72 bp GTCTTTGTCTGGGAGTCTGAAGAACTGTCAGAGGCCTaGACATTATCAGCTGTGCGTTCCTTGTCATTGGCT +
Preference number: 3 (lower is better)
Translates to: VFVWESEELSEA*TLSAVRSLSLA
Trigger: AGCCAATGACAAGGAACGCACAGCTGATAATGTCCAGGCCTCTGACAGTTCTTCAGACTCCCAGACAAAGAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000040081.7
ENSMUST00000105354.8
ENSMUST00000105355.8
ENSMUST00000186864.7
3UTR-3UTR CAA 90 bp CCTGGTGGGTGTTTCATGTGGCACTGCGGCAGATGTTTGACTTGTTTTGATGACGTTTTATTGCACACCTaGGAGGAGAGATGTTACACG +
Preference number: 3 (lower is better)
Translates to: PGGCFMWHCGRCLTCFDDVLLHT*EERCYT
Trigger: CGTGTAACATCTCTCCTCCAAGGTGTGCAATAAAAC...GTCATCAAAACAAGTCAAACATCTGCCGCAGTGCCACATGAAACACCCACCAGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000105354.8
ENSMUST00000105355.8
ENSMUST00000105357.2
ENSMUST00000105358.8
ENSMUST00000186864.7
CDS-3UTR TCA 90 bp CTGACGTGTGGAGGCCTGCCTGGTGGGTGTTTCATGTGGCACTGCGGCAGATGTGAGCGCATGGGCAGCTaGGCGGAGCCCAGAGTCCCA +
Preference number: 4 (lower is better)
Translates to: LTCGGLPGGCFMWHCGRCERMGS*AEPRVP
Trigger: TGGGACTCTGGGCTCCGCTCAGCTGCCCATGCGCTC...ACATCTGCCGCAGTGCCACATGAAACACCCACCAGGCAGGCCTCCACACGTCAG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105357.2
ENSMUST00000105358.8
CDS-3UTR GCA 90 bp GCTCCTTGGGCAGGGGTCTCTCGGTCTTGTGGCCCACATGTGTGCAAGGGTGGTTGCGGAGGCTGTTGCTaGGGCTGCCGATCGGCCTGT +
Preference number: 4 (lower is better)
Translates to: APWAGVSRSCGPHVCKGGCGGCC*GCRSAC
Trigger: ACAGGCCGATCGGCAGCCGCAGCAACAGCCTCCGCA...ACCACCCTTGCACACATGTGGGCCACAAGACCGAGAGACCCCTGCCCAAGGAGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000105357.2
ENSMUST00000105358.8
CDS-3UTR GCA 90 bp GCTCCTTGGGCAGGGGTCTCTCGGTCTTGTGGCCCACATGTGTGCAAGGGTGGTGGGTGCAGTTGTGGCTaGTGGCGCTGCTGCTGCTGG +
Preference number: 4 (lower is better)
Translates to: APWAGVSRSCGPHVCKGGGCSCG*WRCCCW
Trigger: CCAGCAGCAGCAGCGCCAGCAGCCACAACTGCACCC...ACCACCCTTGCACACATGTGGGCCACAAGACCGAGAGACCCCTGCCCAAGGAGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000105357.2
ENSMUST00000105358.8
3UTR CAA 72 bp GAGGGGTCTGGTGGTTTGTTCCCGTGTGGCGGCCTGTaGTGCGATTGTGTCCCAAGGTCCGGCCTGCTGGCT +
Preference number: 4 (lower is better)
Translates to: EGSGGLFPCGGL*CDCVPRSGLLA
Trigger: AGCCAGCAGGCCGGACCTTGGGACACAATCGCACAACAGGCCGCCACACGGGAACAAACCACCAGACCCCTC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000105354.8
ENSMUST00000105355.8
ENSMUST00000186864.7
3UTR CAA 72 bp GTGCCGGCCACCTGTGTCTTCTGGCCCTGCTTGTTCTaGGAACCTGCGTCCCCTGGCTCCACAGGAGCCTTG +
Preference number: 4 (lower is better)
Translates to: VPATCVFWPCLF*EPASPGSTGAL
Trigger: CAAGGCTCCTGTGGAGCCAGGGGACGCAGGTTCCAAGAACAAGCAGGGCCAGAAGACACAGGTGGCCGGCAC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000105354.8
ENSMUST00000105355.8
ENSMUST00000186864.7
CDS-3UTR TCA 90 bp GTGTTTCATGTGGCTCCTTGGGCAGGGGTCTCTCGGTCTTGTGGCCCACATGTGTGCCTCGGAGGGTGCTaGGGTGCCGGCCACCTGTGT +
Preference number: 4 (lower is better)
Translates to: VFHVAPWAGVSRSCGPHVCLGGC*GAGHLC
Trigger: ACACAGGTGGCCGGCACCTCAGCACCCTCCGAGGCA...CACATGTGGGCCACAAGACCGAGAGACCCCTGCCCAAGGAGCCACATGAAACAC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000105357.2
ENSMUST00000105358.8
CDS-3UTR GCA 90 bp AGGTCTGACGTGTGGAGGCCTGCCTGGTGGGTGTTTCATGTGGCACTGCGGCAGCCACAGGAGCCTTGCTaGCAGCCTGGTTGGGGTCAG +
Preference number: 4 (lower is better)
Translates to: RSDVWRPAWWVFHVALRQPQEPC*QPGWGQ
Trigger: CTGACCCCAACCAGGCTGGCAGCAAGGCTCCTGTGG...CTGCCGCAGTGCCACATGAAACACCCACCAGGCAGGCCTCCACACGTCAGACCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000105357.2
ENSMUST00000105358.8
CDS-3UTR CCA 90 bp GTGTTTCATGTGGCTCCTTGGGCAGGGGTCTCTCGGTCTTGTGGCCCACATGTGCAAGGTCCGGCCTGCTaGCTGGGAGGCACCTCCCGA +
Preference number: 4 (lower is better)
Translates to: VFHVAPWAGVSRSCGPHVQGPAC*LGGTSR
Trigger: TCGGGAGGTGCCTCCCAGCCAGCAGGCCGGACCTTG...CACATGTGGGCCACAAGACCGAGAGACCCCTGCCCAAGGAGCCACATGAAACAC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000105357.2
ENSMUST00000105358.8
CDS-3UTR CCA 90 bp GACGTGTGGAGGCCTGCCTGGTGGGTGTTTCATGTGGCACTGCGGCAGATGTTTCAAGGTCCGGCCTGCTaGCTGGGAGGCACCTCCCGA +
Preference number: 4 (lower is better)
Translates to: DVWRPAWWVFHVALRQMFQGPAC*LGGTSR
Trigger: TCGGGAGGTGCCTCCCAGCCAGCAGGCCGGACCTTG...AAACATCTGCCGCAGTGCCACATGAAACACCCACCAGGCAGGCCTCCACACGTC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105357.2
ENSMUST00000105358.8
CDS-3UTR TCA 90 bp GCGGAGCCCAGAGTCCCACTGGGCAGTCGGGCACGCTGTGCAGCCCTGGGAGTCCTCGATAGCTTTGACTaGAGCATATGCGGGGTATAC +
Preference number: 4 (lower is better)
Translates to: AEPRVPLGSRARCAALGVLDSFD*SICGVY
Trigger: GTATACCCCGCATATGCTTCAGTCAAAGCTATCGAG...GACTCCCAGGGCTGCACAGCGTGCCCGACTGCCCAGTGGGACTCTGGGCTCCGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040081.7
ENSMUST00000105354.8
ENSMUST00000105355.8
ENSMUST00000186864.7
CDS-3UTR TCA 90 bp GCTCCTTGGGCAGGGGTCTCTCGGTCTTGTGGCCCACATGTGTGCAAGGGTGGTCCTGTGGCGGAGACCTaGGGGGTCTGGTGGTTTGTT +
Preference number: 4 (lower is better)
Translates to: APWAGVSRSCGPHVCKGGPVAET*GVWWFV
Trigger: AACAAACCACCAGACCCCTCAGGTCTCCGCCACAGG...ACCACCCTTGCACACATGTGGGCCACAAGACCGAGAGACCCCTGCCCAAGGAGC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000105357.2
ENSMUST00000105358.8
CDS-3UTR GCA 90 bp TGGTCTAGTGTTTCATGTGGCTCCTTGGGCAGGGGTCTCTCGGTCTTGTGGCCCTGCGGAGGCTGTTGCTaGGGCTGCCGATCGGCCTGT +
Preference number: 4 (lower is better)
Translates to: WSSVSCGSLGRGLSVLWPCGGCC*GCRSAC
Trigger: ACAGGCCGATCGGCAGCCGCAGCAACAGCCTCCGCA...GGGCCACAAGACCGAGAGACCCCTGCCCAAGGAGCCACATGAAACACTAGACCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000105357.2
ENSMUST00000105358.8
CDS-3UTR GCA 90 bp CTGACGTGTGGAGGCCTGCCTGGTGGGTGTTTCATGTGGCACTGCGGCAGATGTCCACAGGAGCCTTGCTaGCAGCCTGGTTGGGGTCAG +
Preference number: 4 (lower is better)
Translates to: LTCGGLPGGCFMWHCGRCPQEPC*QPGWGQ
Trigger: CTGACCCCAACCAGGCTGGCAGCAAGGCTCCTGTGG...ACATCTGCCGCAGTGCCACATGAAACACCCACCAGGCAGGCCTCCACACGTCAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000105357.2
ENSMUST00000105358.8
CDS-3UTR CCA 90 bp GTTACACGGGGGACCACGGGATGGTGTTTCACGTGCACCTTCATGGGTGTTTTGGGCGGACAAAGGAGGTaGGGCCTGCCCCGTCTCCCC +
Preference number: 4 (lower is better)
Translates to: VTRGTTGWCFTCTFMGVLGGQRR*GLPRLP
Trigger: GGGGAGACGGGGCAGGCCCCACCTCCTTTGTCCGCC...CAAAACACCCATGAAGGTGCACGTGAAACACCATCCCGTGGTCCCCCGTGTAAC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000105357.2
ENSMUST00000105358.8
CDS-3UTR TCA 90 bp GTCCCACTGGGCAGTCGGGCACGCTGTGCAGCCCTGGGAGTCAAACTGCCCCGGCTCGATAGCTTTGACTaGAGCATATGCGGGGTATAC +
Preference number: 4 (lower is better)
Translates to: VPLGSRARCAALGVKLPRLDSFD*SICGVY
Trigger: GTATACCCCGCATATGCTTCAGTCAAAGCTATCGAG...CCGGGGCAGTTTGACTCCCAGGGCTGCACAGCGTGCCCGACTGCCCAGTGGGAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000040081.7
ENSMUST00000105354.8
ENSMUST00000105355.8
ENSMUST00000186864.7
CDS-3UTR TCA 90 bp GGGTGTTTCATGTGGGGCTGTGTAAAAGGTGTCTCACTTGGGAGTCCACGGGCAGAGCGCATGGGCAGCTaGGCGGAGCCCAGAGTCCCA +
Preference number: 4 (lower is better)
Translates to: GCFMWGCVKGVSLGSPRAERMGS*AEPRVP
Trigger: TGGGACTCTGGGCTCCGCTCAGCTGCCCATGCGCTC...TGCCCGTGGACTCCCAAGTGAGACACCTTTTACACAGCCCCACATGAAACACCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000105357.2
ENSMUST00000105358.8
CDS-3UTR TCA 90 bp GTTACACGGGGGACCACGGGATGGTGTTTCACGTGCACCTTCATGGGTGTTTTGTGCCTCGGAGGGTGCTaGGGTGCCGGCCACCTGTGT +
Preference number: 4 (lower is better)
Translates to: VTRGTTGWCFTCTFMGVLCLGGC*GAGHLC
Trigger: ACACAGGTGGCCGGCACCTCAGCACCCTCCGAGGCA...CAAAACACCCATGAAGGTGCACGTGAAACACCATCCCGTGGTCCCCCGTGTAAC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000105357.2
ENSMUST00000105358.8
CDS-3UTR GCA 90 bp GAGGCTCTTGTACGGTGCTCAGGTGGTCTAGTGTTTCATGTGGCTCCTTGGGCATGGGGCTGCTGGGGCTaGTGCGGAGGCTGTTGCTGC +
Preference number: 4 (lower is better)
Translates to: EALVRCSGGLVFHVAPWAWGCWG*CGGCCC
Trigger: GCAGCAACAGCCTCCGCAGCAGCCCCAGCAGCCCCA...TGCCCAAGGAGCCACATGAAACACTAGACCACCTGAGCACCGTACAAGAGCCTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000105357.2
ENSMUST00000105358.8
CDS-3UTR CCA 90 bp TTACACGGGGGACCACGGGATGGTGTTTCACGTGCACCTTCATGGGTGTTTTGTGGCGGACAAAGGAGGTaGGGCCTGCCCCGTCTCCCC +
Preference number: 4 (lower is better)
Translates to: LHGGPRDGVSRAPSWVFCGGQRR*GLPRLP
Trigger: GGGGAGACGGGGCAGGCCCCACCTCCTTTGTCCGCC...ACAAAACACCCATGAAGGTGCACGTGAAACACCATCCCGTGGTCCCCCGTGTAA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000105357.2
ENSMUST00000105358.8
CDS-3UTR CCA 90 bp GCTCTTGTACGGTGCTCAGGTGGTCTAGTGTTTCATGTGGCTCCTTGGGCAGGGCACGCTGTGCAGCCCTaGGAGTCAAACTGCCCCGGC +
Preference number: 4 (lower is better)
Translates to: ALVRCSGGLVFHVAPWAGHAVQP*ESNCPG
Trigger: GCCGGGGCAGTTTGACTCCCAGGGCTGCACAGCGTG...CCCTGCCCAAGGAGCCACATGAAACACTAGACCACCTGAGCACCGTACAAGAGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000105357.2
ENSMUST00000105358.8
CDS-3UTR CCA 90 bp GTGTTTCATGTGGCTCCTTGGGCAGGGGTCTCTCGGTCTTGTGGCCCACATGTGGCCTTGCTGCCAGCCTaGTTGGGGTCAGGGGATGTG +
Preference number: 4 (lower is better)
Translates to: VFHVAPWAGVSRSCGPHVALLPA*LGSGDV
Trigger: CACATCCCCTGACCCCAACCAGGCTGGCAGCAAGGC...CACATGTGGGCCACAAGACCGAGAGACCCCTGCCCAAGGAGCCACATGAAACAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000105357.2
ENSMUST00000105358.8
CDS-3UTR TCA 90 bp AGCCCAGAGTCCCACTGGGCAGTCGGGCACGCTGTGCAGCCCTGGGAGTCAAACACAGGAGTAGATCGCTaGAGAATTCGACCAGACCGA +
Preference number: 4 (lower is better)
Translates to: SPESHWAVGHAVQPWESNTGVDR*RIRPDR
Trigger: TCGGTCTGGTCGAATTCTTCAGCGATCTACTCCTGT...GTTTGACTCCCAGGGCTGCACAGCGTGCCCGACTGCCCAGTGGGACTCTGGGCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000040081.7
ENSMUST00000105354.8
ENSMUST00000105355.8
ENSMUST00000186864.7
CDS-3UTR TCA 90 bp TGGTCTAGTGTTTCATGTGGCTCCTTGGGCAGGGGTCTCTCGGTCTTGTGGCCCCCTGTGGCGGAGACCTaGGGGGTCTGGTGGTTTGTT +
Preference number: 4 (lower is better)
Translates to: WSSVSCGSLGRGLSVLWPPVAET*GVWWFV
Trigger: AACAAACCACCAGACCCCTCAGGTCTCCGCCACAGG...GGGCCACAAGACCGAGAGACCCCTGCCCAAGGAGCCACATGAAACACTAGACCA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000105357.2
ENSMUST00000105358.8
CDS-3UTR GCA 90 bp GTGAGGGTGTTTCATGTGGGGCTGTGTAAAAGGTGTCTCACTTGGGAGTCCACGTGGGGCTGCTGGGGCTaGTGCGGAGGCTGTTGCTGC +
Preference number: 4 (lower is better)
Translates to: VRVFHVGLCKRCLTWESTWGCWG*CGGCCC
Trigger: GCAGCAACAGCCTCCGCAGCAGCCCCAGCAGCCCCA...CGTGGACTCCCAAGTGAGACACCTTTTACACAGCCCCACATGAAACACCCTCAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000105357.2
ENSMUST00000105358.8
CDS-3UTR GCA 90 bp GTTACACGGGGGACCACGGGATGGTGTTTCACGTGCACCTTCATGGGTGTTTTGGGGTGCAGTTGTGGCTaGTGGCGCTGCTGCTGCTGG +
Preference number: 4 (lower is better)
Translates to: VTRGTTGWCFTCTFMGVLGCSCG*WRCCCW
Trigger: CCAGCAGCAGCAGCGCCAGCAGCCACAACTGCACCC...CAAAACACCCATGAAGGTGCACGTGAAACACCATCCCGTGGTCCCCCGTGTAAC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000105357.2
ENSMUST00000105358.8
CDS-3UTR GCA 90 bp TCATGTGGCTCCTTGGGCAGGGGTCTCTCGGTCTTGTGGCCCACATGTGTGCAACTGTGTGGAAGTGGGTaGAGTTGTGGCTGCTGGCGC +
Preference number: 4 (lower is better)
Translates to: SCGSLGRGLSVLWPTCVQLCGSG*SCGCWR
Trigger: GCGCCAGCAGCCACAACTGCACCCACTTCCACACAG...TTGCACACATGTGGGCCACAAGACCGAGAGACCCCTGCCCAAGGAGCCACATGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000105357.2
ENSMUST00000105358.8
CDS-3UTR GCA 90 bp GACGTGTGGAGGCCTGCCTGGTGGGTGTTTCATGTGGCACTGCGGCAGATGTTTCTGTGTGGAAGTGGGTaGAGTTGTGGCTGCTGGCGC +
Preference number: 4 (lower is better)
Translates to: DVWRPAWWVFHVALRQMFLCGSG*SCGCWR
Trigger: GCGCCAGCAGCCACAACTGCACCCACTTCCACACAG...AAACATCTGCCGCAGTGCCACATGAAACACCCACCAGGCAGGCCTCCACACGTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105357.2
ENSMUST00000105358.8
CDS-3UTR GCA 90 bp GTACGGTGCTCAGGTGGTCTAGTGTTTCATGTGGCTCCTTGGGCAGGGGTCTCTGCTCCACAGGAGCCTTaGTGCCAGCCTGGTTGGGGT +
Preference number: 4 (lower is better)
Translates to: VRCSGGLVFHVAPWAGVSAPQEP*CQPGWG
Trigger: ACCCCAACCAGGCTGGCAGCAAGGCTCCTGTGGAGC...AGAGACCCCTGCCCAAGGAGCCACATGAAACACTAGACCACCTGAGCACCGTAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000105357.2
ENSMUST00000105358.8
CDS-3UTR CCA 90 bp AGCCCAGAGTCCCACTGGGCAGTCGGGCACGCTGTGCAGCCCTGGGAGTCAAACGTCGTCTTCCTTGCTTaGGCTCTCGATAGCTTTGAC +
Preference number: 4 (lower is better)
Translates to: SPESHWAVGHAVQPWESNVVFLA*ALDSFD
Trigger: GTCAAAGCTATCGAGAGCCCAAGCAAGGAAGACGAC...GTTTGACTCCCAGGGCTGCACAGCGTGCCCGACTGCCCAGTGGGACTCTGGGCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000040081.7
ENSMUST00000105354.8
ENSMUST00000105355.8
ENSMUST00000186864.7
CDS-3UTR CCA 90 bp GGGACCACGGGATGGTGTTTCACGTGCACCTTCATGGGTGTTTTGTGCTGCTGTCACGCTGTGCAGCCCTaGGAGTCAAACTGCCCCGGC +
Preference number: 4 (lower is better)
Translates to: GTTGWCFTCTFMGVLCCCHAVQP*ESNCPG
Trigger: GCCGGGGCAGTTTGACTCCCAGGGCTGCACAGCGTG...ACAGCAGCACAAAACACCCATGAAGGTGCACGTGAAACACCATCCCGTGGTCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000105357.2
ENSMUST00000105358.8
CDS-3UTR TCA 90 bp GTGTTTCATGTGGCTCCTTGGGCAGGGGTCTCTCGGTCTTGTGGCCCACATGTGAGAGAGGAATCAGAGTaGCAGGGGACCAGTGCCTCG +
Preference number: 4 (lower is better)
Translates to: VFHVAPWAGVSRSCGPHVREESE*QGTSAS
Trigger: CGAGGCACTGGTCCCCTGTCACTCTGATTCCTCTCT...CACATGTGGGCCACAAGACCGAGAGACCCCTGCCCAAGGAGCCACATGAAACAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000105357.2
ENSMUST00000105358.8
CDS-3UTR GCA 90 bp GGGACCACGGGATGGTGTTTCACGTGCACCTTCATGGGTGTTTTGTGCTGCTGTGCTCCACAGGAGCCTTaGTGCCAGCCTGGTTGGGGT +
Preference number: 4 (lower is better)
Translates to: GTTGWCFTCTFMGVLCCCAPQEP*CQPGWG
Trigger: ACCCCAACCAGGCTGGCAGCAAGGCTCCTGTGGAGC...ACAGCAGCACAAAACACCCATGAAGGTGCACGTGAAACACCATCCCGTGGTCCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000105357.2
ENSMUST00000105358.8
CDS-3UTR GCA 90 bp TCATGTGGCTCCTTGGGCAGGGGTCTCTCGGTCTTGTGGCCCACATGTGTGCAACTTGTTCTTGGAACCTaGGTCCCCTGGCTCCACAGG +
Preference number: 4 (lower is better)
Translates to: SCGSLGRGLSVLWPTCVQLVLGT*VPWLHR
Trigger: CCTGTGGAGCCAGGGGACGCAGGTTCCAAGAACAAG...TTGCACACATGTGGGCCACAAGACCGAGAGACCCCTGCCCAAGGAGCCACATGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000105357.2
ENSMUST00000105358.8
CDS-3UTR GCA 90 bp GCTCCTTGGGCAGGGGTCTCTCGGTCTTGTGGCCCACATGTGTGCAAGGGTGGTTGTGTCTTCTGGCCCTaGTTGTTCTTGGAACCTGCG +
Preference number: 4 (lower is better)
Translates to: APWAGVSRSCGPHVCKGGCVFWP*LFLEPA
Trigger: CGCAGGTTCCAAGAACAAGCAGGGCCAGAAGACACA...ACCACCCTTGCACACATGTGGGCCACAAGACCGAGAGACCCCTGCCCAAGGAGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000105357.2
ENSMUST00000105358.8
CDS-3UTR CCA 90 bp CCGGGACTTGCTGGGAATCTGGGAGCCGCTGGCAGAAACAGTGGCCAGCTGACCGTCGTCTTCCTTGCTTaGGCTCTCGATAGCTTTGAC +
Preference number: 4 (lower is better)
Translates to: PGLAGNLGAAGRNSGQLTVVFLA*ALDSFD
Trigger: GTCAAAGCTATCGAGAGCCCAAGCAAGGAAGACGAC...GGTCAGCTGGCCACTGTTTCTGCCAGCGGCTCCCAGATTCCCAGCAAGTCCCGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000040081.7
ENSMUST00000105354.8
ENSMUST00000105355.8
ENSMUST00000186864.7
CDS-3UTR CCA 90 bp CGGGATGGTGTTTCACGTGCACCTTCATGGGTGTTTTGTGCTGCTGTGAGGGTGGCCTTGCTGCCAGCCTaGTTGGGGTCAGGGGATGTG +
Preference number: 4 (lower is better)
Translates to: RDGVSRAPSWVFCAAVRVALLPA*LGSGDV
Trigger: CACATCCCCTGACCCCAACCAGGCTGGCAGCAAGGC...CACCCTCACAGCAGCACAAAACACCCATGAAGGTGCACGTGAAACACCATCCCG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000105357.2
ENSMUST00000105358.8
CDS-3UTR CCA 90 bp GCTCCTTGGGCAGGGGTCTCTCGGTCTTGTGGCCCACATGTGTGCAAGGGTGGTTTGTGGCTGAGGCTGTaGTTGCAGTGGTGTCTTTGT +
Preference number: 4 (lower is better)
Translates to: APWAGVSRSCGPHVCKGGLWLRL*LQWCLC
Trigger: ACAAAGACACCACTGCAACCACAGCCTCAGCCACAA...ACCACCCTTGCACACATGTGGGCCACAAGACCGAGAGACCCCTGCCCAAGGAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000105357.2
ENSMUST00000105358.8
CDS-3UTR CCA 90 bp GACGTGTGGAGGCCTGCCTGGTGGGTGTTTCATGTGGCACTGCGGCAGATGTTTGACTTGCTGGGAATCTaGGAGCCGCTGGCAGAAACA +
Preference number: 4 (lower is better)
Translates to: DVWRPAWWVFHVALRQMFDLLGI*EPLAET
Trigger: TGTTTCTGCCAGCGGCTCCCAGATTCCCAGCAAGTC...AAACATCTGCCGCAGTGCCACATGAAACACCCACCAGGCAGGCCTCCACACGTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105357.2
ENSMUST00000105358.8
CDS-3UTR TCA 90 bp AGGTCTGACGTGTGGAGGCCTGCCTGGTGGGTGTTTCATGTGGCACTGCGGCAGCTCGATAGCTTTGACTaGAGCATATGCGGGGTATAC +
Preference number: 4 (lower is better)
Translates to: RSDVWRPAWWVFHVALRQLDSFD*SICGVY
Trigger: GTATACCCCGCATATGCTTCAGTCAAAGCTATCGAG...CTGCCGCAGTGCCACATGAAACACCCACCAGGCAGGCCTCCACACGTCAGACCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000105354.8
ENSMUST00000105355.8
ENSMUST00000105357.2
ENSMUST00000105358.8
ENSMUST00000186864.7
CDS-3UTR TCA 90 bp GGCTGGGGAATCCGCACACAGACTGCCAGCAGACCTCCTCACTTGTGGTTCAGGACAGGAGTAGATCGCTaGAGAATTCGACCAGACCGA +
Preference number: 4 (lower is better)
Translates to: GWGIRTQTASRPPHLWFRTGVDR*RIRPDR
Trigger: TCGGTCTGGTCGAATTCTTCAGCGATCTACTCCTGT...CCTGAACCACAAGTGAGGAGGTCTGCTGGCAGTCTGTGTGCGGATTCCCCAGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000105354.8
ENSMUST00000105355.8
ENSMUST00000186864.7
CDS-3UTR TCA 90 bp GACGTGTGGAGGCCTGCCTGGTGGGTGTTTCATGTGGCACTGCGGCAGATGTTTCTTTGTCTGGGAGTCTaGAGAACTGTCAGAGGCCTG +
Preference number: 4 (lower is better)
Translates to: DVWRPAWWVFHVALRQMFLCLGV*RTVRGL
Trigger: CAGGCCTCTGACAGTTCTTCAGACTCCCAGACAAAG...AAACATCTGCCGCAGTGCCACATGAAACACCCACCAGGCAGGCCTCCACACGTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105357.2
ENSMUST00000105358.8
CDS-3UTR TCA 90 bp AGGGTGTTTCATGTGGGGCTGTGTAAAAGGTGTCTCACTTGGGAGTCCACGGGCAGAGAGGAATCAGAGTaGCAGGGGACCAGTGCCTCG +
Preference number: 4 (lower is better)
Translates to: RVFHVGLCKRCLTWESTGREESE*QGTSAS
Trigger: CGAGGCACTGGTCCCCTGTCACTCTGATTCCTCTCT...GCCCGTGGACTCCCAAGTGAGACACCTTTTACACAGCCCCACATGAAACACCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000105357.2
ENSMUST00000105358.8
CDS-3UTR GCA 90 bp AGCCCAGAGTCCCACTGGGCAGTCGGGCACGCTGTGCAGCCCTGGGAGTCAAACTCTAGAGCCATGTGGTaGTTTAGAAAGAGTGGTCTT +
Preference number: 4 (lower is better)
Translates to: SPESHWAVGHAVQPWESNSRAMW*FRKSGL
Trigger: AAGACCACTCTTTCTAAAGCACCACATGGCTCTAGA...GTTTGACTCCCAGGGCTGCACAGCGTGCCCGACTGCCCAGTGGGACTCTGGGCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000105354.8
ENSMUST00000105355.8
ENSMUST00000186864.7
CDS-3UTR GCA 90 bp GGGTGTTTCATGTGGGGCTGTGTAAAAGGTGTCTCACTTGGGAGTCCACGGGCACTTGTTCTTGGAACCTaGGTCCCCTGGCTCCACAGG +
Preference number: 4 (lower is better)
Translates to: GCFMWGCVKGVSLGSPRALVLGT*VPWLHR
Trigger: CCTGTGGAGCCAGGGGACGCAGGTTCCAAGAACAAG...TGCCCGTGGACTCCCAAGTGAGACACCTTTTACACAGCCCCACATGAAACACCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000105357.2
ENSMUST00000105358.8
CDS-3UTR GCA 90 bp GACGTGTGGAGGCCTGCCTGGTGGGTGTTTCATGTGGCACTGCGGCAGATGTTTTGTGTCTTCTGGCCCTaGTTGTTCTTGGAACCTGCG +
Preference number: 4 (lower is better)
Translates to: DVWRPAWWVFHVALRQMFCVFWP*LFLEPA
Trigger: CGCAGGTTCCAAGAACAAGCAGGGCCAGAAGACACA...AAACATCTGCCGCAGTGCCACATGAAACACCCACCAGGCAGGCCTCCACACGTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000105357.2
ENSMUST00000105358.8
CDS-3UTR CCA 90 bp CTGACGTGTGGAGGCCTGCCTGGTGGGTGTTTCATGTGGCACTGCGGCAGATGTGTCGTCTTCCTTGCTTaGGCTCTCGATAGCTTTGAC +
Preference number: 4 (lower is better)
Translates to: LTCGGLPGGCFMWHCGRCVVFLA*ALDSFD
Trigger: GTCAAAGCTATCGAGAGCCCAAGCAAGGAAGACGAC...ACATCTGCCGCAGTGCCACATGAAACACCCACCAGGCAGGCCTCCACACGTCAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000105354.8
ENSMUST00000105355.8
ENSMUST00000105357.2
ENSMUST00000105358.8
ENSMUST00000186864.7
CDS-3UTR CCA 90 bp AGTGTTTCATGTGGCTCCTTGGGCAGGGGTCTCTCGGTCTTGTGGCCCACATGTGACTTGCTGGGAATCTaGGAGCCGCTGGCAGAAACA +
Preference number: 4 (lower is better)
Translates to: SVSCGSLGRGLSVLWPTCDLLGI*EPLAET
Trigger: TGTTTCTGCCAGCGGCTCCCAGATTCCCAGCAAGTC...ACATGTGGGCCACAAGACCGAGAGACCCCTGCCCAAGGAGCCACATGAAACACT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000105357.2
ENSMUST00000105358.8
3UTR CAA 72 bp GCGGTTGTGGCTGAGGCTGTGGTTGCAGTGGTGTCTTaGTCTGGGAGTCTGAAGAACTGTCAGAGGCCTGGA +
Preference number: 4 (lower is better)
Translates to: AVVAEAVVAVVS*SGSLKNCQRPG
Trigger: TCCAGGCCTCTGACAGTTCTTCAGACTCCCAGACAAAGACACCACTGCAACCACAGCCTCAGCCACAACCGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000040081.7
ENSMUST00000105354.8
ENSMUST00000105355.8
ENSMUST00000186864.7
3UTR CAA 72 bp TGGCCCGTGAGGGGCTTCCTACTGTCTTACTTGGGCTaGAGGTTCGGCGTTGTGGTTGTGGTTGTGGTTGTG +
Preference number: 4 (lower is better)
Translates to: WPVRGFLLSYLG*RFGVVVVVVVV
Trigger: CACAACCACAACCACAACCACAACGCCGAACCTCAAGCCCAAGTAAGACAGTAGGAAGCCCCTCACGGGCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040081.7
ENSMUST00000105354.8
ENSMUST00000105355.8
ENSMUST00000186864.7
CDS-3UTR TCA 90 bp TCATGTGGCTCCTTGGGCAGGGGTCTCTCGGTCTTGTGGCCCACATGTGTGCAAACAGGAGTAGATCGCTaGAGAATTCGACCAGACCGA +
Preference number: 4 (lower is better)
Translates to: SCGSLGRGLSVLWPTCVQTGVDR*RIRPDR
Trigger: TCGGTCTGGTCGAATTCTTCAGCGATCTACTCCTGT...TTGCACACATGTGGGCCACAAGACCGAGAGACCCCTGCCCAAGGAGCCACATGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000105354.8
ENSMUST00000105355.8
ENSMUST00000105357.2
ENSMUST00000105358.8
ENSMUST00000186864.7
CDS-3UTR CCA 90 bp GAGCCTGAGCGGGTGGTTTTATTGCACACCTTGGAGGAGAGATGTTACACGGGGGGGTCTGACTTTACTTaGGGTCCAGTTCCAGAGCGG +
Preference number: 4 (lower is better)
Translates to: EPERVVLLHTLEERCYTGGSDFT*GPVPER
Trigger: CCGCTCTGGAACTGGACCCCAAGTAAAGTCAGACCC...CCCCGTGTAACATCTCTCCTCCAAGGTGTGCAATAAAACCACCCGCTCAGGCTC
56% GC, longest homopolymer 7 nt, total homopolymer stretches 11 nt.
Matches the following 1 transcripts:
ENSMUST00000105358.8
CDS-3UTR CCA 90 bp AGTGTTTCATGTGGCTCCTTGGGCAGGGGTCTCTCGGTCTTGTGGCCCACATGTTGCGTTCCTTGTCATTaGCTGGGGAATCCGCACACA +
Preference number: 4 (lower is better)
Translates to: SVSCGSLGRGLSVLWPTCCVPCH*LGNPHT
Trigger: TGTGTGCGGATTCCCCAGCCAATGACAAGGAACGCA...ACATGTGGGCCACAAGACCGAGAGACCCCTGCCCAAGGAGCCACATGAAACACT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000105357.2
ENSMUST00000105358.8
CDS-3UTR CCA 90 bp GCTCCTTGGGCAGGGGTCTCTCGGTCTTGTGGCCCACATGTGTGCAAGGGTGGTAGTGGTGTCTTTGTCTaGGAGTCTGAAGAACTGTCA +
Preference number: 4 (lower is better)
Translates to: APWAGVSRSCGPHVCKGGSGVFV*ESEELS
Trigger: TGACAGTTCTTCAGACTCCCAGACAAAGACACCACT...ACCACCCTTGCACACATGTGGGCCACAAGACCGAGAGACCCCTGCCCAAGGAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000105357.2
ENSMUST00000105358.8
CDS-3UTR CCA 90 bp GCTCTTGTACGGTGCTCAGGTGGTCTAGTGTTTCATGTGGCTCCTTGGGCAGGGAGGCTGTGGTTGCAGTaGTGTCTTTGTCTGGGAGTC +
Preference number: 4 (lower is better)
Translates to: ALVRCSGGLVFHVAPWAGRLWLQ*CLCLGV
Trigger: GACTCCCAGACAAAGACACCACTGCAACCACAGCCT...CCCTGCCCAAGGAGCCACATGAAACACTAGACCACCTGAGCACCGTACAAGAGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105357.2
ENSMUST00000105358.8
CDS-3UTR TCA 90 bp GTTACACGGGGGACCACGGGATGGTGTTTCACGTGCACCTTCATGGGTGTTTTGCTTTGTCTGGGAGTCTaGAGAACTGTCAGAGGCCTG +
Preference number: 4 (lower is better)
Translates to: VTRGTTGWCFTCTFMGVLLCLGV*RTVRGL
Trigger: CAGGCCTCTGACAGTTCTTCAGACTCCCAGACAAAG...CAAAACACCCATGAAGGTGCACGTGAAACACCATCCCGTGGTCCCCCGTGTAAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000105357.2
ENSMUST00000105358.8
CDS-3UTR CCA 90 bp GCTCTTGTACGGTGCTCAGGTGGTCTAGTGTTTCATGTGGCTCCTTGGGCAGGGGAACTGTCAGAGGCCTaGACATTATCAGCTGTGCGT +
Preference number: 4 (lower is better)
Translates to: ALVRCSGGLVFHVAPWAGELSEA*TLSAVR
Trigger: ACGCACAGCTGATAATGTCCAGGCCTCTGACAGTTC...CCCTGCCCAAGGAGCCACATGAAACACTAGACCACCTGAGCACCGTACAAGAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000105357.2
ENSMUST00000105358.8
CDS-3UTR CCA 90 bp AGGGTGTTTCATGTGGGGCTGTGTAAAAGGTGTCTCACTTGGGAGTCCACGGGCAGGCTGTGGTTGCAGTaGTGTCTTTGTCTGGGAGTC +
Preference number: 4 (lower is better)
Translates to: RVFHVGLCKRCLTWESTGRLWLQ*CLCLGV
Trigger: GACTCCCAGACAAAGACACCACTGCAACCACAGCCT...GCCCGTGGACTCCCAAGTGAGACACCTTTTACACAGCCCCACATGAAACACCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000105357.2
ENSMUST00000105358.8
CDS-3UTR CCA 90 bp GAGGCTCTTGTACGGTGCTCAGGTGGTCTAGTGTTTCATGTGGCTCCTTGGGCATTGTGGTTGTGGTTGTaGTTGCGGTTGCGGTTGTGG +
Preference number: 4 (lower is better)
Translates to: EALVRCSGGLVFHVAPWALWLWL*LRLRLW
Trigger: CCACAACCGCAACCGCAACCACAACCACAACCACAA...TGCCCAAGGAGCCACATGAAACACTAGACCACCTGAGCACCGTACAAGAGCCTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105357.2
ENSMUST00000105358.8
CDS-3UTR CCA 90 bp CGGGATGGTGTTTCACGTGCACCTTCATGGGTGTTTTGTGCTGCTGTGAGGGTGGCCACCTGTGTCTTCTaGCCCTGCTTGTTCTTGGAA +
Preference number: 4 (lower is better)
Translates to: RDGVSRAPSWVFCAAVRVATCVF*PCLFLE
Trigger: TTCCAAGAACAAGCAGGGCCAGAAGACACAGGTGGC...CACCCTCACAGCAGCACAAAACACCCATGAAGGTGCACGTGAAACACCATCCCG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000105357.2
ENSMUST00000105358.8
CDS-3UTR CCA 90 bp GTTACACGGGGGACCACGGGATGGTGTTTCACGTGCACCTTCATGGGTGTTTTGGCCACCTGTGTCTTCTaGCCCTGCTTGTTCTTGGAA +
Preference number: 4 (lower is better)
Translates to: VTRGTTGWCFTCTFMGVLATCVF*PCLFLE
Trigger: TTCCAAGAACAAGCAGGGCCAGAAGACACAGGTGGC...CAAAACACCCATGAAGGTGCACGTGAAACACCATCCCGTGGTCCCCCGTGTAAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000105357.2
ENSMUST00000105358.8
3UTR CAA 72 bp ACGGGATGGTGTTTCACGTGCACCTTCATGGGTGTTTaGTGCTGCTGTGAGGGTGTTTCATGTGGGGCTGTG +
Preference number: 4 (lower is better)
Translates to: TGWCFTCTFMGV*CCCEGVSCGAV
Trigger: CACAGCCCCACATGAAACACCCTCACAGCAGCACAAAACACCCATGAAGGTGCACGTGAAACACCATCCCGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000105354.8
ENSMUST00000105355.8
ENSMUST00000105357.2
ENSMUST00000105358.8
ENSMUST00000186864.7
CDS-3UTR TCA 90 bp AGTGTTTCATGTGGCTCCTTGGGCAGGGGTCTCTCGGTCTTGTGGCCCACATGTCTCGATAGCTTTGACTaGAGCATATGCGGGGTATAC +
Preference number: 4 (lower is better)
Translates to: SVSCGSLGRGLSVLWPTCLDSFD*SICGVY
Trigger: GTATACCCCGCATATGCTTCAGTCAAAGCTATCGAG...ACATGTGGGCCACAAGACCGAGAGACCCCTGCCCAAGGAGCCACATGAAACACT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000105354.8
ENSMUST00000105355.8
ENSMUST00000105357.2
ENSMUST00000105358.8
ENSMUST00000186864.7
CDS-3UTR CCA 90 bp GGGACCACGGGATGGTGTTTCACGTGCACCTTCATGGGTGTTTTGTGCTGCTGTGTCGTCTTCCTTGCTTaGGCTCTCGATAGCTTTGAC +
Preference number: 4 (lower is better)
Translates to: GTTGWCFTCTFMGVLCCCVVFLA*ALDSFD
Trigger: GTCAAAGCTATCGAGAGCCCAAGCAAGGAAGACGAC...ACAGCAGCACAAAACACCCATGAAGGTGCACGTGAAACACCATCCCGTGGTCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000105354.8
ENSMUST00000105355.8
ENSMUST00000105357.2
ENSMUST00000105358.8
ENSMUST00000186864.7
CDS-3UTR CCA 90 bp GTGAGGGTGTTTCATGTGGGGCTGTGTAAAAGGTGTCTCACTTGGGAGTCCACGTGCGTTCCTTGTCATTaGCTGGGGAATCCGCACACA +
Preference number: 4 (lower is better)
Translates to: VRVFHVGLCKRCLTWESTCVPCH*LGNPHT
Trigger: TGTGTGCGGATTCCCCAGCCAATGACAAGGAACGCA...CGTGGACTCCCAAGTGAGACACCTTTTACACAGCCCCACATGAAACACCCTCAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000105357.2
ENSMUST00000105358.8
CDS-3UTR CCA 90 bp GGGACCACGGGATGGTGTTTCACGTGCACCTTCATGGGTGTTTTGTGCTGCTGTGAACTGTCAGAGGCCTaGACATTATCAGCTGTGCGT +
Preference number: 4 (lower is better)
Translates to: GTTGWCFTCTFMGVLCCCELSEA*TLSAVR
Trigger: ACGCACAGCTGATAATGTCCAGGCCTCTGACAGTTC...ACAGCAGCACAAAACACCCATGAAGGTGCACGTGAAACACCATCCCGTGGTCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000105357.2
ENSMUST00000105358.8
CDS-3UTR CCA 90 bp TGGTCTAGTGTTTCATGTGGCTCCTTGGGCAGGGGTCTCTCGGTCTTGTGGCCCAGTGGTGTCTTTGTCTaGGAGTCTGAAGAACTGTCA +
Preference number: 4 (lower is better)
Translates to: WSSVSCGSLGRGLSVLWPSGVFV*ESEELS
Trigger: TGACAGTTCTTCAGACTCCCAGACAAAGACACCACT...GGGCCACAAGACCGAGAGACCCCTGCCCAAGGAGCCACATGAAACACTAGACCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000105357.2
ENSMUST00000105358.8
CDS-3UTR CCA 90 bp GGGTGTTTCATGTGGGGCTGTGTAAAAGGTGTCTCACTTGGGAGTCCACGGGCATTGTGGCTGAGGCTGTaGTTGCAGTGGTGTCTTTGT +
Preference number: 4 (lower is better)
Translates to: GCFMWGCVKGVSLGSPRALWLRL*LQWCLC
Trigger: ACAAAGACACCACTGCAACCACAGCCTCAGCCACAA...TGCCCGTGGACTCCCAAGTGAGACACCTTTTACACAGCCCCACATGAAACACCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000105357.2
ENSMUST00000105358.8
CDS-3UTR CCA 90 bp TTACACGGGGGACCACGGGATGGTGTTTCACGTGCACCTTCATGGGTGTTTTGTTTGTGGTTGTGGTTGTaGTTGCGGTTGCGGTTGTGG +
Preference number: 4 (lower is better)
Translates to: LHGGPRDGVSRAPSWVFCLWLWL*LRLRLW
Trigger: CCACAACCGCAACCGCAACCACAACCACAACCACAA...ACAAAACACCCATGAAGGTGCACGTGAAACACCATCCCGTGGTCCCCCGTGTAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000105357.2
ENSMUST00000105358.8
CDS-3UTR TCA 90 bp GCTGTGGTTGCAGTGGTGTCTTTGTCTGGGAGTCTGAAGAACTGTCAGAGGCCTACAGGAGTAGATCGCTaGAGAATTCGACCAGACCGA +
Preference number: 4 (lower is better)
Translates to: AVVAVVSLSGSLKNCQRPTGVDR*RIRPDR
Trigger: TCGGTCTGGTCGAATTCTTCAGCGATCTACTCCTGT...AGGCCTCTGACAGTTCTTCAGACTCCCAGACAAAGACACCACTGCAACCACAGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000040081.7
ENSMUST00000105354.8
ENSMUST00000105355.8
ENSMUST00000186864.7
CDS-3UTR TCA 90 bp GTGAGGGTGTTTCATGTGGGGCTGTGTAAAAGGTGTCTCACTTGGGAGTCCACGACAGGAGTAGATCGCTaGAGAATTCGACCAGACCGA +
Preference number: 4 (lower is better)
Translates to: VRVFHVGLCKRCLTWESTTGVDR*RIRPDR
Trigger: TCGGTCTGGTCGAATTCTTCAGCGATCTACTCCTGT...CGTGGACTCCCAAGTGAGACACCTTTTACACAGCCCCACATGAAACACCCTCAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000105354.8
ENSMUST00000105355.8
ENSMUST00000105357.2
ENSMUST00000105358.8
ENSMUST00000186864.7
CDS-3UTR CCA 90 bp GGAGGCCTGCCTGGTGGGTGTTTCATGTGGCACTGCGGCAGATGTTTGACTTGTCTGGTGACTATACTGTaGCCATTTACAGGTGATCTC +
Preference number: 4 (lower is better)
Translates to: GGLPGGCFMWHCGRCLTCLVTIL*PFTGDL
Trigger: GAGATCACCTGTAAATGGCCACAGTATAGTCACCAG...ACAAGTCAAACATCTGCCGCAGTGCCACATGAAACACCCACCAGGCAGGCCTCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105357.2
ENSMUST00000105358.8
CDS-3UTR GCA 90 bp GTACGGTGCTCAGGTGGTCTAGTGTTTCATGTGGCTCCTTGGGCAGGGGTCTCTTCTAGAGCCATGTGGTaGTTTAGAAAGAGTGGTCTT +
Preference number: 4 (lower is better)
Translates to: VRCSGGLVFHVAPWAGVSSRAMW*FRKSGL
Trigger: AAGACCACTCTTTCTAAAGCACCACATGGCTCTAGA...AGAGACCCCTGCCCAAGGAGCCACATGAAACACTAGACCACCTGAGCACCGTAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000105354.8
ENSMUST00000105355.8
ENSMUST00000105357.2
ENSMUST00000105358.8
ENSMUST00000186864.7
CDS-3UTR GCA 90 bp AGTGTTTCATGTGGCTCCTTGGGCAGGGGTCTCTCGGTCTTGTGGCCCACATGTTCTAGAGCCATGTGGTaGTTTAGAAAGAGTGGTCTT +
Preference number: 4 (lower is better)
Translates to: SVSCGSLGRGLSVLWPTCSRAMW*FRKSGL
Trigger: AAGACCACTCTTTCTAAAGCACCACATGGCTCTAGA...ACATGTGGGCCACAAGACCGAGAGACCCCTGCCCAAGGAGCCACATGAAACACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000105354.8
ENSMUST00000105355.8
ENSMUST00000105357.2
ENSMUST00000105358.8
ENSMUST00000186864.7
CDS-3UTR CCA 90 bp GGGAGTCTGAAGAACTGTCAGAGGCCTGGACATTATCAGCTGTGCGTTCCTTGTGTCGTCTTCCTTGCTTaGGCTCTCGATAGCTTTGAC +
Preference number: 4 (lower is better)
Translates to: GSLKNCQRPGHYQLCVPCVVFLA*ALDSFD
Trigger: GTCAAAGCTATCGAGAGCCCAAGCAAGGAAGACGAC...ACAAGGAACGCACAGCTGATAATGTCCAGGCCTCTGACAGTTCTTCAGACTCCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000040081.7
ENSMUST00000105354.8
ENSMUST00000105355.8
ENSMUST00000186864.7
CDS-3UTR CCA 90 bp CGGGATGGTGTTTCACGTGCACCTTCATGGGTGTTTTGTGCTGCTGTGAGGGTGCTGGTGACTATACTGTaGCCATTTACAGGTGATCTC +
Preference number: 4 (lower is better)
Translates to: RDGVSRAPSWVFCAAVRVLVTIL*PFTGDL
Trigger: GAGATCACCTGTAAATGGCCACAGTATAGTCACCAG...CACCCTCACAGCAGCACAAAACACCCATGAAGGTGCACGTGAAACACCATCCCG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000105357.2
ENSMUST00000105358.8
3UTR CAA 72 bp CCTGGTGGGTGTTTCATGTGGCACTGCGGCAGATGTTaGACTTGTTTTGATGACGGGCAGTTATTCGGTGAG +
Preference number: 4 (lower is better)
Translates to: PGGCFMWHCGRC*TCFDDGQLFGE
Trigger: CTCACCGAATAACTGCCCGTCATCAAAACAAGTCAAACATCTGCCGCAGTGCCACATGAAACACCCACCAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000105354.8
ENSMUST00000105355.8
ENSMUST00000105357.2
ENSMUST00000105358.8
ENSMUST00000186864.7
CDS-3UTR TCA 90 bp CCTGGTGGGTGTTTCATGTGGCACTGCGGCAGATGTTTGACTTGTTTTGATGACACAGGAGTAGATCGCTaGAGAATTCGACCAGACCGA +
Preference number: 4 (lower is better)
Translates to: PGGCFMWHCGRCLTCFDDTGVDR*RIRPDR
Trigger: TCGGTCTGGTCGAATTCTTCAGCGATCTACTCCTGT...GTCATCAAAACAAGTCAAACATCTGCCGCAGTGCCACATGAAACACCCACCAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000105354.8
ENSMUST00000105355.8
ENSMUST00000105357.2
ENSMUST00000105358.8
ENSMUST00000186864.7
CDS-3UTR GCA 90 bp AGGGTGTTTCATGTGGGGCTGTGTAAAAGGTGTCTCACTTGGGAGTCCACGGGCTCTAGAGCCATGTGGTaGTTTAGAAAGAGTGGTCTT +
Preference number: 4 (lower is better)
Translates to: RVFHVGLCKRCLTWESTGSRAMW*FRKSGL
Trigger: AAGACCACTCTTTCTAAAGCACCACATGGCTCTAGA...GCCCGTGGACTCCCAAGTGAGACACCTTTTACACAGCCCCACATGAAACACCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000105354.8
ENSMUST00000105355.8
ENSMUST00000105357.2
ENSMUST00000105358.8
ENSMUST00000186864.7
CDS-3UTR GCA 90 bp GGGACCACGGGATGGTGTTTCACGTGCACCTTCATGGGTGTTTTGTGCTGCTGTTCTAGAGCCATGTGGTaGTTTAGAAAGAGTGGTCTT +
Preference number: 4 (lower is better)
Translates to: GTTGWCFTCTFMGVLCCCSRAMW*FRKSGL
Trigger: AAGACCACTCTTTCTAAAGCACCACATGGCTCTAGA...ACAGCAGCACAAAACACCCATGAAGGTGCACGTGAAACACCATCCCGTGGTCCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000105354.8
ENSMUST00000105355.8
ENSMUST00000105357.2
ENSMUST00000105358.8
ENSMUST00000186864.7
CDS-3UTR TCA 90 bp CCTGGTGGGTGTTTCATGTGGCACTGCGGCAGATGTTTGACTTGTTTTGATGACCTCGATAGCTTTGACTaGAGCATATGCGGGGTATAC +
Preference number: 4 (lower is better)
Translates to: PGGCFMWHCGRCLTCFDDLDSFD*SICGVY
Trigger: GTATACCCCGCATATGCTTCAGTCAAAGCTATCGAG...GTCATCAAAACAAGTCAAACATCTGCCGCAGTGCCACATGAAACACCCACCAGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000105354.8
ENSMUST00000105355.8
ENSMUST00000105357.2
ENSMUST00000105358.8
ENSMUST00000186864.7
CDS TCA 90 bp CTGGCGCAGACCGTCCATGGCAGCGGCGGGCGCGGGGCAGGCCACTaGAGCACGCCCGCAACCTCGCGCACCGGCGCCGCCGAGAGCGCA +
Preference number: 5 (lower is better)
Translates to: LAQTVHGSGGRGAGH*STPATSRTGAAESA
Trigger: TGCGCTCTCGGCGGCGCCGGTGCGCGAGGTTGCGGGCGTGCTTCAGTGGCCTGCCCCGCGCCCGCCGCTGCCATGGACGGTCTGCGCCAG
78% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000105357.2
ENSMUST00000105358.8
CDS GCA 90 bp GGCGAGGGCTCCCGCGGCGAGATACCGCTTCTCTACACCGGTCCTTaGTTCGAGCGCCCCGAGCGCTTCGGTGGCCACGTTCTTCTGTTC +
Preference number: 5 (lower is better)
Translates to: GEGSRGEIPLLYTGP*FERPERFGGHVLLF
Trigger: GAACAGAAGAACGTGGCCACCGAAGCGCTCGGGGCGCTCGAAGCAAGGACCGGTGTAGAGAAGCGGTATCTCGCCGCGGGAGCCCTCGCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000040081.7
ENSMUST00000105354.8
ENSMUST00000105355.8
ENSMUST00000105357.2
ENSMUST00000105358.8
ENSMUST00000186864.7
CDS CCA 90 bp TCTTCTGTTCCAGAAAACGTTCGAAGCGCTGGCGCAGACCGTCCATaGCAGCGGCGGGCGCGGGGCAGGCCACTGAAGCACGCCCGCAAC +
Preference number: 5 (lower is better)
Translates to: SSVPENVRSAGADRP*QRRARGRPLKHARN
Trigger: GTTGCGGGCGTGCTTCAGTGGCCTGCCCCGCGCCCGCCGCTGCCATGGACGGTCTGCGCCAGCGCTTCGAACGTTTTCTGGAACAGAAGA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000105357.2
ENSMUST00000105358.8
CDS CCA 90 bp GCTTCGGTGGCCACGTTCTTCTGTTCCAGAAAACGTTCGAAGCGCTaGCGCAGACCGTCCATGGCAGCGGCGGGCGCGGGGCAGGCCACT +
Preference number: 5 (lower is better)
Translates to: ASVATFFCSRKRSKR*RRPSMAAAGAGQAT
Trigger: AGTGGCCTGCCCCGCGCCCGCCGCTGCCATGGACGGTCTGCGCCAGCGCTTCGAACGTTTTCTGGAACAGAAGAACGTGGCCACCGAAGC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000105357.2
ENSMUST00000105358.8
CDS-3UTR CAA 90 bp GCCCCGGCTGCGATGGGGCCGGGACTTGCTGGGAATCTGGGAGCCGCTGGCAGAACAAATCCGATGACATaGCACAGTAGAGAGGCCCCG +
Preference number: 5 (lower is better)
Translates to: APAAMGPGLAGNLGAAGRTNPMT*HSREAP
Trigger: CGGGGCCTCTCTACTGTGCAATGTCATCGGATTTGT...TCTGCCAGCGGCTCCCAGATTCCCAGCAAGTCCCGGCCCCATCGCAGCCGGGGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000040081.7
ENSMUST00000105354.8
ENSMUST00000105355.8
ENSMUST00000186864.7
CDS-3UTR CAA 90 bp GTCCCACTGGGCAGTCGGGCACGCTGTGCAGCCCTGGGAGTCAAACTGCCCCGGACAGTGTCGTCTTCCTaGCTTGGGCTCTCGATAGCT +
Preference number: 5 (lower is better)
Translates to: VPLGSRARCAALGVKLPRTVSSS*LGLSIA
Trigger: AGCTATCGAGAGCCCAAGCAAGGAAGACGACACTGT...CCGGGGCAGTTTGACTCCCAGGGCTGCACAGCGTGCCCGACTGCCCAGTGGGAC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040081.7
ENSMUST00000105354.8
ENSMUST00000105355.8
ENSMUST00000186864.7
CDS-3UTR CAA 90 bp GTGTTTCATGTGGCTCCTTGGGCAGGGGTCTCTCGGTCTTGTGGCCCACATGTGGGCTCCACAGGAGCCTaGCTGCCAGCCTGGTTGGGG +
Preference number: 5 (lower is better)
Translates to: VFHVAPWAGVSRSCGPHVGSTGA*LPAWLG
Trigger: CCCCAACCAGGCTGGCAGCAAGGCTCCTGTGGAGCC...CACATGTGGGCCACAAGACCGAGAGACCCCTGCCCAAGGAGCCACATGAAACAC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000105357.2
ENSMUST00000105358.8
CDS-3UTR CAA 90 bp GTACGGTGCTCAGGTGGTCTAGTGTTTCATGTGGCTCCTTGGGCAGGGGTCTCTGGCTCCACAGGAGCCTaGCTGCCAGCCTGGTTGGGG +
Preference number: 5 (lower is better)
Translates to: VRCSGGLVFHVAPWAGVSGSTGA*LPAWLG
Trigger: CCCCAACCAGGCTGGCAGCAAGGCTCCTGTGGAGCC...AGAGACCCCTGCCCAAGGAGCCACATGAAACACTAGACCACCTGAGCACCGTAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000105357.2
ENSMUST00000105358.8
CDS TCA 90 bp GATGTTGATGCTGGGGTGACGAGAGCCCGGCCCCGAGCCAAGGCCTaGAGTACGTCCCGGGTTATCCCAGCTGCTAGGTCCAATGCTCTT +
Preference number: 5 (lower is better)
Translates to: DVDAGVTRARPRAKA*STSRVIPAARSNAL
Trigger: AAGAGCATTGGACCTAGCAGCTGGGATAACCCGGGACGTACTTCAGGCCTTGGCTCGGGGCCGGGCTCTCGTCACCCCAGCATCAACATC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000105354.8
ENSMUST00000105358.8
ENSMUST00000186864.7
CDS-3UTR CAA 90 bp CCCAGAGTCCCACTGGGCAGTCGGGCACGCTGTGCAGCCCTGGGAGTCAAACTGACAGTGTCGTCTTCCTaGCTTGGGCTCTCGATAGCT +
Preference number: 5 (lower is better)
Translates to: PRVPLGSRARCAALGVKLTVSSS*LGLSIA
Trigger: AGCTATCGAGAGCCCAAGCAAGGAAGACGACACTGT...CAGTTTGACTCCCAGGGCTGCACAGCGTGCCCGACTGCCCAGTGGGACTCTGGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000040081.7
ENSMUST00000105354.8
ENSMUST00000105355.8
ENSMUST00000186864.7
CDS-3UTR CAA 90 bp AGCCCAGAGTCCCACTGGGCAGTCGGGCACGCTGTGCAGCCCTGGGAGTCAAACACAGTGTCGTCTTCCTaGCTTGGGCTCTCGATAGCT +
Preference number: 5 (lower is better)
Translates to: SPESHWAVGHAVQPWESNTVSSS*LGLSIA
Trigger: AGCTATCGAGAGCCCAAGCAAGGAAGACGACACTGT...GTTTGACTCCCAGGGCTGCACAGCGTGCCCGACTGCCCAGTGGGACTCTGGGCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000040081.7
ENSMUST00000105354.8
ENSMUST00000105355.8
ENSMUST00000186864.7
CDS-3UTR CAA 90 bp GCCGGGACTTGCTGGGAATCTGGGAGCCGCTGGCAGAAACAGTGGCCAGCTGACACAAATCCGATGACATaGCACAGTAGAGAGGCCCCG +
Preference number: 5 (lower is better)
Translates to: AGTCWESGSRWQKQWPADTNPMT*HSREAP
Trigger: CGGGGCCTCTCTACTGTGCAATGTCATCGGATTTGT...GTCAGCTGGCCACTGTTTCTGCCAGCGGCTCCCAGATTCCCAGCAAGTCCCGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040081.7
ENSMUST00000105354.8
ENSMUST00000105355.8
ENSMUST00000186864.7
CDS-3UTR CAA 90 bp GTACGGTGCTCAGGTGGTCTAGTGTTTCATGTGGCTCCTTGGGCAGGGGTCTCTTTGCTGCCAGCCTGGTaGGGGTCAGGGGATGTGCTG +
Preference number: 5 (lower is better)
Translates to: VRCSGGLVFHVAPWAGVSLLPAW*GSGDVL
Trigger: CAGCACATCCCCTGACCCCAACCAGGCTGGCAGCAA...AGAGACCCCTGCCCAAGGAGCCACATGAAACACTAGACCACCTGAGCACCGTAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000105357.2
ENSMUST00000105358.8
CDS-3UTR CAA 90 bp CTGACGTGTGGAGGCCTGCCTGGTGGGTGTTTCATGTGGCACTGCGGCAGATGTGTCTTCTGGCCCTGCTaGTTCTTGGAACCTGCGTCC +
Preference number: 5 (lower is better)
Translates to: LTCGGLPGGCFMWHCGRCVFWPC*FLEPAS
Trigger: GGACGCAGGTTCCAAGAACAAGCAGGGCCAGAAGAC...ACATCTGCCGCAGTGCCACATGAAACACCCACCAGGCAGGCCTCCACACGTCAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105357.2
ENSMUST00000105358.8
CDS-3UTR CAA 90 bp GCTGAGGTGCCGGCCACCTGTGTCTTCTGGCCCTGCTTGTTCTTGGAACCTGCGACAAATCCGATGACATaGCACAGTAGAGAGGCCCCG +
Preference number: 5 (lower is better)
Translates to: AEVPATCVFWPCLFLEPATNPMT*HSREAP
Trigger: CGGGGCCTCTCTACTGTGCAATGTCATCGGATTTGT...CGCAGGTTCCAAGAACAAGCAGGGCCAGAAGACACAGGTGGCCGGCACCTCAGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000105354.8
ENSMUST00000105355.8
ENSMUST00000186864.7
CDS-3UTR CAA 90 bp GACGTGTGGAGGCCTGCCTGGTGGGTGTTTCATGTGGCACTGCGGCAGATGTTTTGGTTGTGGTTGTGGTaGCGGTTGCGGTTGTGGCTG +
Preference number: 5 (lower is better)
Translates to: DVWRPAWWVFHVALRQMFWLWLW*RLRLWL
Trigger: CAGCCACAACCGCAACCGCAACCACAACCACAACCA...AAACATCTGCCGCAGTGCCACATGAAACACCCACCAGGCAGGCCTCCACACGTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000105357.2
ENSMUST00000105358.8
CDS CCA 90 bp GCAGACCTCCTCACTTGTGGTTCAGGAGTGGGGTCTGACTTTACTTaGCGTCCCGGGTTATCCCAGCTGCTAGGTCCAATGCTCTTCCGC +
Preference number: 5 (lower is better)
Translates to: ADLLTCGSGVGSDFT*RPGLSQLLGPMLFR
Trigger: GCGGAAGAGCATTGGACCTAGCAGCTGGGATAACCCGGGACGCCAAGTAAAGTCAGACCCCACTCCTGAACCACAAGTGAGGAGGTCTGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105357.2
CDS-3UTR CAA 90 bp GGAGGCCTGCCTGGTGGGTGTTTCATGTGGCACTGCGGCAGATGTTTGACTTGTAGCAGACCTCCTCACTaGTGGTTCAGGAGTGGGGTC +
Preference number: 5 (lower is better)
Translates to: GGLPGGCFMWHCGRCLTCSRPPH*WFRSGV
Trigger: GACCCCACTCCTGAACCACAAGTGAGGAGGTCTGCT...ACAAGTCAAACATCTGCCGCAGTGCCACATGAAACACCCACCAGGCAGGCCTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000105357.2
ENSMUST00000105358.8
CDS-3UTR CAA 90 bp TCATGTGGCTCCTTGGGCAGGGGTCTCTCGGTCTTGTGGCCCACATGTGTGCAATGGCTGAGGCTGTGGTaGCAGTGGTGTCTTTGTCTG +
Preference number: 5 (lower is better)
Translates to: SCGSLGRGLSVLWPTCVQWLRLW*QWCLCL
Trigger: CAGACAAAGACACCACTGCAACCACAGCCTCAGCCA...TTGCACACATGTGGGCCACAAGACCGAGAGACCCCTGCCCAAGGAGCCACATGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000105357.2
ENSMUST00000105358.8
CDS-3UTR CAA 90 bp TTACACGGGGGACCACGGGATGGTGTTTCACGTGCACCTTCATGGGTGTTTTGTTTGCTGCCAGCCTGGTaGGGGTCAGGGGATGTGCTG +
Preference number: 5 (lower is better)
Translates to: LHGGPRDGVSRAPSWVFCLLPAW*GSGDVL
Trigger: CAGCACATCCCCTGACCCCAACCAGGCTGGCAGCAA...ACAAAACACCCATGAAGGTGCACGTGAAACACCATCCCGTGGTCCCCCGTGTAA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000105357.2
ENSMUST00000105358.8
CDS CCA 90 bp TCCCGGGTTATCCCAGCTGCTAGGTCCAATGCTCTTCCGCTTAGCTaGCTCGCGGCGCTGTCTAGAGCCATGTGGTGCTTTAGAAAGAGT +
Preference number: 5 (lower is better)
Translates to: SRVIPAARSNALPLS*LAALSRAMWCFRKS
Trigger: ACTCTTTCTAAAGCACCACATGGCTCTAGACAGCGCCGCGAGCCAGCTAAGCGGAAGAGCATTGGACCTAGCAGCTGGGATAACCCGGGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000105354.8
ENSMUST00000105355.8
ENSMUST00000105357.2
ENSMUST00000105358.8
ENSMUST00000186864.7
CDS-3UTR CAA 90 bp GACGTGTGGAGGCCTGCCTGGTGGGTGTTTCATGTGGCACTGCGGCAGATGTTTACAGTGTCGTCTTCCTaGCTTGGGCTCTCGATAGCT +
Preference number: 5 (lower is better)
Translates to: DVWRPAWWVFHVALRQMFTVSSS*LGLSIA
Trigger: AGCTATCGAGAGCCCAAGCAAGGAAGACGACACTGT...AAACATCTGCCGCAGTGCCACATGAAACACCCACCAGGCAGGCCTCCACACGTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000105354.8
ENSMUST00000105355.8
ENSMUST00000105357.2
ENSMUST00000105358.8
ENSMUST00000186864.7
CDS-3UTR CAA 90 bp GGGACCACGGGATGGTGTTTCACGTGCACCTTCATGGGTGTTTTGTGCTGCTGTAGCAGACCTCCTCACTaGTGGTTCAGGAGTGGGGTC +
Preference number: 5 (lower is better)
Translates to: GTTGWCFTCTFMGVLCCCSRPPH*WFRSGV
Trigger: GACCCCACTCCTGAACCACAAGTGAGGAGGTCTGCT...ACAGCAGCACAAAACACCCATGAAGGTGCACGTGAAACACCATCCCGTGGTCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000105357.2
ENSMUST00000105358.8
CDS-3UTR CAA 90 bp GGGACCACGGGATGGTGTTTCACGTGCACCTTCATGGGTGTTTTGTGCTGCTGTTGGTTGTGGTTGTGGTaGCGGTTGCGGTTGTGGCTG +
Preference number: 5 (lower is better)
Translates to: GTTGWCFTCTFMGVLCCCWLWLW*RLRLWL
Trigger: CAGCCACAACCGCAACCGCAACCACAACCACAACCA...ACAGCAGCACAAAACACCCATGAAGGTGCACGTGAAACACCATCCCGTGGTCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000105357.2
ENSMUST00000105358.8
CDS-3UTR CAA 90 bp AGGGTGTTTCATGTGGGGCTGTGTAAAAGGTGTCTCACTTGGGAGTCCACGGGCGTCTTCTGGCCCTGCTaGTTCTTGGAACCTGCGTCC +
Preference number: 5 (lower is better)
Translates to: RVFHVGLCKRCLTWESTGVFWPC*FLEPAS
Trigger: GGACGCAGGTTCCAAGAACAAGCAGGGCCAGAAGAC...GCCCGTGGACTCCCAAGTGAGACACCTTTTACACAGCCCCACATGAAACACCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000105357.2
ENSMUST00000105358.8
CDS TCA 90 bp GCTTGCCCGCGTAGTAGAAAGGGAACCAGAACAGGAGTAGATCGCTaGAGAATTCGACCAGACCGAACAGGGCGTACACCACCCAGTAGG +
Preference number: 5 (lower is better)
Translates to: ACPRSRKGTRTGVDR*RIRPDRTGRTPPSR
Trigger: CCTACTGGGTGGTGTACGCCCTGTTCGGTCTGGTCGAATTCTTCAGCGATCTACTCCTGTTCTGGTTCCCTTTCTACTACGCGGGCAAGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040081.7
CDS GCA 90 bp CGCGATGGTATAGTAGTAATGCCCCGTTCCAGGGTCCGGGCGTCATaGAAAATAACAGGAAGGCGCACTTGCCCGCGTAGTAGAAAGGGA +
Preference number: 5 (lower is better)
Translates to: RDGIVVMPRSRVRAS*KITGRRTCPRSRKG
Trigger: TCCCTTTCTACTACGCGGGCAAGTGCGCCTTCCTGTTATTTTGCATGACGCCCGGACCCTGGAACGGGGCATTACTACTATACCATCGCG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000105354.8
ENSMUST00000105355.8
ENSMUST00000105357.2
ENSMUST00000105358.8
ENSMUST00000186864.7
CDS-3UTR CAA 90 bp GGAGGCCTGCCTGGTGGGTGTTTCATGTGGCACTGCGGCAGATGTTTGACTTGTACAGTGTCGTCTTCCTaGCTTGGGCTCTCGATAGCT +
Preference number: 5 (lower is better)
Translates to: GGLPGGCFMWHCGRCLTCTVSSS*LGLSIA
Trigger: AGCTATCGAGAGCCCAAGCAAGGAAGACGACACTGT...ACAAGTCAAACATCTGCCGCAGTGCCACATGAAACACCCACCAGGCAGGCCTCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000105354.8
ENSMUST00000105355.8
ENSMUST00000105357.2
ENSMUST00000105358.8
ENSMUST00000186864.7
CDS-3UTR CAA 90 bp AGGGTGTTTCATGTGGGGCTGTGTAAAAGGTGTCTCACTTGGGAGTCCACGGGCTGGCTGAGGCTGTGGTaGCAGTGGTGTCTTTGTCTG +
Preference number: 5 (lower is better)
Translates to: RVFHVGLCKRCLTWESTGWLRLW*QWCLCL
Trigger: CAGACAAAGACACCACTGCAACCACAGCCTCAGCCA...GCCCGTGGACTCCCAAGTGAGACACCTTTTACACAGCCCCACATGAAACACCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000105357.2
ENSMUST00000105358.8
CDS-3UTR CAA 90 bp GGGTGTTTCATGTGGGGCTGTGTAAAAGGTGTCTCACTTGGGAGTCCACGGGCATGGTTGTGGTTGTGGTaGTGGTTGCGGTTGCGGTTG +
Preference number: 5 (lower is better)
Translates to: GCFMWGCVKGVSLGSPRAWLWLW*WLRLRL
Trigger: CAACCGCAACCGCAACCACAACCACAACCACAACCA...TGCCCGTGGACTCCCAAGTGAGACACCTTTTACACAGCCCCACATGAAACACCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000105357.2
ENSMUST00000105358.8
CDS TCA 90 bp ACTTGCCCGCGTAGTAGAAAGGGAACCAGAACAGGAGTAGATCGCTaGAGAATTCGACCAGACCGAACAGGGCGTACACCACCCAGTAGG +
Preference number: 5 (lower is better)
Translates to: TCPRSRKGTRTGVDR*RIRPDRTGRTPPSR
Trigger: CCTACTGGGTGGTGTACGCCCTGTTCGGTCTGGTCGAATTCTTCAGCGATCTACTCCTGTTCTGGTTCCCTTTCTACTACGCGGGCAAGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000105354.8
ENSMUST00000105355.8
ENSMUST00000105357.2
ENSMUST00000105358.8
ENSMUST00000186864.7
CDS-3UTR CAA 90 bp AGGGTGTTTCATGTGGGGCTGTGTAAAAGGTGTCTCACTTGGGAGTCCACGGGCACAAATCCGATGACATaGCACAGTAGAGAGGCCCCG +
Preference number: 5 (lower is better)
Translates to: RVFHVGLCKRCLTWESTGTNPMT*HSREAP
Trigger: CGGGGCCTCTCTACTGTGCAATGTCATCGGATTTGT...GCCCGTGGACTCCCAAGTGAGACACCTTTTACACAGCCCCACATGAAACACCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000105354.8
ENSMUST00000105355.8
ENSMUST00000105357.2
ENSMUST00000105358.8
ENSMUST00000186864.7
CDS-3UTR CAA 90 bp GGGTGTTTCATGTGGGGCTGTGTAAAAGGTGTCTCACTTGGGAGTCCACGGGCAACAAATCCGATGACATaGCACAGTAGAGAGGCCCCG +
Preference number: 5 (lower is better)
Translates to: GCFMWGCVKGVSLGSPRATNPMT*HSREAP
Trigger: CGGGGCCTCTCTACTGTGCAATGTCATCGGATTTGT...TGCCCGTGGACTCCCAAGTGAGACACCTTTTACACAGCCCCACATGAAACACCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000105354.8
ENSMUST00000105355.8
ENSMUST00000105357.2
ENSMUST00000105358.8
ENSMUST00000186864.7
CDS CCA 90 bp TCTAGAGCCATGTGGTGCTTTAGAAAGAGTGGTCTTATGACGCGATaGTATAGTAGTAATGCCCCGTTCCAGGGTCCGGGCGTCATGCAA +
Preference number: 5 (lower is better)
Translates to: SRAMWCFRKSGLMTR*YSSNAPFQGPGVMQ
Trigger: TTGCATGACGCCCGGACCCTGGAACGGGGCATTACTACTATACCATCGCGTCATAAGACCACTCTTTCTAAAGCACCACATGGCTCTAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000105354.8
ENSMUST00000105355.8
ENSMUST00000105357.2
ENSMUST00000105358.8
ENSMUST00000186864.7
CDS-3UTR CAA 90 bp CCTGGTGGGTGTTTCATGTGGCACTGCGGCAGATGTTTGACTTGTTTTGATGACACAGTGTCGTCTTCCTaGCTTGGGCTCTCGATAGCT +
Preference number: 5 (lower is better)
Translates to: PGGCFMWHCGRCLTCFDDTVSSS*LGLSIA
Trigger: AGCTATCGAGAGCCCAAGCAAGGAAGACGACACTGT...GTCATCAAAACAAGTCAAACATCTGCCGCAGTGCCACATGAAACACCCACCAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000105354.8
ENSMUST00000105355.8
ENSMUST00000105357.2
ENSMUST00000105358.8
ENSMUST00000186864.7
CDS CCA 72 bp CCAGAAAACGTTCGAAGCGCTGGCGCAGACCGTCCATaGCAGCGGCGGGCGCGGGGCAGGCCACTGAAGCAC +
Preference number: 6 (lower is better)
Translates to: PENVRSAGADRP*QRRARGRPLKH
Trigger: GTGCTTCAGTGGCCTGCCCCGCGCCCGCCGCTGCCATGGACGGTCTGCGCCAGCGCTTCGAACGTTTTCTGG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000105357.2
ENSMUST00000105358.8
CDS CAA 72 bp CTCCCGCGGCGAGATACCGCTTCTCTACACCGGTCCTaGCTTCGAGCGCCCCGAGCGCTTCGGTGGCCACGT +
Preference number: 6 (lower is better)
Translates to: LPRRDTASLHRS*LRAPRALRWPR
Trigger: ACGTGGCCACCGAAGCGCTCGGGGCGCTCGAAGCAAGGACCGGTGTAGAGAAGCGGTATCTCGCCGCGGGAG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000040081.7
ENSMUST00000105354.8
ENSMUST00000105355.8
ENSMUST00000105357.2
ENSMUST00000105358.8
ENSMUST00000186864.7
CDS CAA 90 bp GGGCGAGGGCTCCCGCGGCGAGATACCGCTTCTCTACACCGGTCCTaGCTTCGAGCGCCCCGAGCGCTTCGGTGGCCACGTTCTTCTGTT +
Preference number: 6 (lower is better)
Translates to: GRGLPRRDTASLHRS*LRAPRALRWPRSSV
Trigger: AACAGAAGAACGTGGCCACCGAAGCGCTCGGGGCGCTCGAAGCAAGGACCGGTGTAGAGAAGCGGTATCTCGCCGCGGGAGCCCTCGCCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000040081.7
ENSMUST00000105354.8
ENSMUST00000105355.8
ENSMUST00000105357.2
ENSMUST00000105358.8
ENSMUST00000186864.7
CDS GCA 72 bp TCCCGCGGCGAGATACCGCTTCTCTACACCGGTCCTTaGTTCGAGCGCCCCGAGCGCTTCGGTGGCCACGTT +
Preference number: 6 (lower is better)
Translates to: SRGEIPLLYTGP*FERPERFGGHV
Trigger: AACGTGGCCACCGAAGCGCTCGGGGCGCTCGAAGCAAGGACCGGTGTAGAGAAGCGGTATCTCGCCGCGGGA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000040081.7
ENSMUST00000105354.8
ENSMUST00000105355.8
ENSMUST00000105357.2
ENSMUST00000105358.8
ENSMUST00000186864.7
CDS CCA 72 bp GCCACGTTCTTCTGTTCCAGAAAACGTTCGAAGCGCTaGCGCAGACCGTCCATGGCAGCGGCGGGCGCGGGG +
Preference number: 6 (lower is better)
Translates to: ATFFCSRKRSKR*RRPSMAAAGAG
Trigger: CCCCGCGCCCGCCGCTGCCATGGACGGTCTGCGCCAGCGCTTCGAACGTTTTCTGGAACAGAAGAACGTGGC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000105357.2
ENSMUST00000105358.8
CDS CCA 72 bp ATCCCAGCTGCTAGGTCCAATGCTCTTCCGCTTAGCTaGCTCGCGGCGCTGTCTAGAGCCATGTGGTGCTTT +
Preference number: 6 (lower is better)
Translates to: IPAARSNALPLS*LAALSRAMWCF
Trigger: AAAGCACCACATGGCTCTAGACAGCGCCGCGAGCCAGCTAAGCGGAAGAGCATTGGACCTAGCAGCTGGGAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000105354.8
ENSMUST00000105355.8
ENSMUST00000105357.2
ENSMUST00000105358.8
ENSMUST00000186864.7
CDS GCA 72 bp ATAGTAGTAATGCCCCGTTCCAGGGTCCGGGCGTCATaGAAAATAACAGGAAGGCGCACTTGCCCGCGTAGT +
Preference number: 6 (lower is better)
Translates to: IVVMPRSRVRAS*KITGRRTCPRS
Trigger: ACTACGCGGGCAAGTGCGCCTTCCTGTTATTTTGCATGACGCCCGGACCCTGGAACGGGGCATTACTACTAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000105354.8
ENSMUST00000105355.8
ENSMUST00000105357.2
ENSMUST00000105358.8
ENSMUST00000186864.7
CDS TCA 72 bp CGTAGTAGAAAGGGAACCAGAACAGGAGTAGATCGCTaGAGAATTCGACCAGACCGAACAGGGCGTACACCA +
Preference number: 6 (lower is better)
Translates to: RSRKGTRTGVDR*RIRPDRTGRTP
Trigger: TGGTGTACGCCCTGTTCGGTCTGGTCGAATTCTTCAGCGATCTACTCCTGTTCTGGTTCCCTTTCTACTACG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000040081.7
ENSMUST00000105354.8
ENSMUST00000105355.8
ENSMUST00000105357.2
ENSMUST00000105358.8
ENSMUST00000186864.7
CDS CCA 72 bp ATGTGGTGCTTTAGAAAGAGTGGTCTTATGACGCGATaGTATAGTAGTAATGCCCCGTTCCAGGGTCCGGGC +
Preference number: 6 (lower is better)
Translates to: MWCFRKSGLMTR*YSSNAPFQGPG
Trigger: GCCCGGACCCTGGAACGGGGCATTACTACTATACCATCGCGTCATAAGACCACTCTTTCTAAAGCACCACAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000105354.8
ENSMUST00000105355.8
ENSMUST00000105357.2
ENSMUST00000105358.8
ENSMUST00000186864.7
CDS TCA 72 bp CTAGAGCCATGTGGTGCTTTAGAAAGAGTGGTCTTATaGCGCGATGGTATAGTAGTAATGCCCCGTTCCAGG +
Preference number: 6 (lower is better)
Translates to: LEPCGALERVVL*RDGIVVMPRSR
Trigger: CCTGGAACGGGGCATTACTACTATACCATCGCGTCATAAGACCACTCTTTCTAAAGCACCACATGGCTCTAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000105354.8
ENSMUST00000105355.8
ENSMUST00000105357.2
ENSMUST00000105358.8
ENSMUST00000186864.7