Pregenerated sensors for REEP4 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000033589Ensembl transcript IDs: ENSMUST00000047218.5, ENSMUST00000226563.2
Found 60 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | GGAATGAACACAGCTGGTTGGACTTTTGGTTTCGTCGGTAGGGACTGGTGGGGCAGGCCTGGGCTGCTTTaGTATAGTGAATGTCTCCCT | + |
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Preference number: 2 (lower is better) Translates to: GMNTAGWTFGFVGRDWWGRPGLL*YSECLP Trigger: AGGGAGACATTCACTATACCAAAGCAGCCCAGGCCT...GCCCCACCAGTCCCTACCGACGAAACCAAAAGTCCAACCAGCTGTGTTCATTCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000047218.5 |
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| 3UTR-3UTR GCA 90 bp | ATATTCATAAGCCTGACCTCACTCACCAACACGAAACATGCAGCTAGTGTACGTGCCCCAGGCCTGGGCTaGTTTGGTATAGTGAATGTC | + |
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Preference number: 2 (lower is better) Translates to: IFISLTSLTNTKHAASVRAPGLG*FGIVNV Trigger: GACATTCACTATACCAAAGCAGCCCAGGCCTGGGGC...ACGTACACTAGCTGCATGTTTCGTGTTGGTGAGTGAGGTCAGGCTTATGAATAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047218.5 |
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| 3UTR-3UTR CCA 90 bp | CACACACACACACACACCAGGCCTTGGAAAAGGCTGTCAAGTATTTTGAAGGACAGGAATGAACACAGCTaGTTGGACTTTTGGTTTCGT | + |
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Preference number: 2 (lower is better) Translates to: HTHTHTRPWKRLSSILKDRNEHS*LDFWFR Trigger: ACGAAACCAAAAGTCCAACCAGCTGTGTTCATTCCT...GTCCTTCAAAATACTTGACAGCCTTTTCCAAGGCCTGGTGTGTGTGTGTGTGTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000047218.5 |
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| 3UTR-3UTR TCA 90 bp | AAGTATTTTGAAGGACAAGAAGGAATGAACACAGCTGGTTGGACTTTTGGTTTCCTCTGGTCCCGTGTCTaGGAAAGTAAAAGGCAGAGG | + |
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Preference number: 2 (lower is better) Translates to: KYFEGQEGMNTAGWTFGFLWSRV*ESKRQR Trigger: CCTCTGCCTTTTACTTTCTCAGACACGGGACCAGAG...GAAACCAAAAGTCCAACCAGCTGTGTTCATTCCTTCTTGTCCTTCAAAATACTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000047218.5 |
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| 3UTR CCA 72 bp | TTAGGCACAAGCCAGACGGAGCAGAACCCCGGTAGCTaGTGTAGCAGCGAAAGGTCCCCTGCTGGCTCCAGA | + |
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Preference number: 3 (lower is better) Translates to: LGTSQTEQNPGS*CSSERSPAGSR Trigger: TCTGGAGCCAGCAGGGGACCTTTCGCTGCTACACCAGCTACCGGGGTTCTGCTCCGTCTGGCTTGTGCCTAA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000047218.5 ENSMUST00000226563.2 |
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| CDS-3UTR GCA 90 bp | CCCGGTAGCTGGTGTAGCAGCGAAAGGTCCCCTGCTGGCTCCAGAGGTAAGGTGCATCCTCTGTGTCACTaGCCTGCAGGCCGCCTGGCC | + |
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Preference number: 4 (lower is better) Translates to: PGSWCSSERSPAGSRGKVHPLCH*PAGRLA Trigger: GGCCAGGCGGCCTGCAGGGCAGTGACACAGAGGATG...CACCTTACCTCTGGAGCCAGCAGGGGACCTTTCGCTGCTACACCAGCTACCGGG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000047218.5 ENSMUST00000226563.2 |
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| CDS-3UTR CCA 90 bp | CAGAACCCCGGTAGCTGGTGTAGCAGCGAAAGGTCCCCTGCTGGCTCCAGAGGTGCAGGCTGGCCCCCTTaGTGTAAGGTGAGAGCAGCC | + |
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Preference number: 4 (lower is better) Translates to: QNPGSWCSSERSPAGSRGAGWPP*CKVRAA Trigger: GGCTGCTCTCACCTTACACCAAGGGGGCCAGCCTGC...ACCTCTGGAGCCAGCAGGGGACCTTTCGCTGCTACACCAGCTACCGGGGTTCTG 63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000047218.5 ENSMUST00000226563.2 |
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| CDS-3UTR TCA 90 bp | GGTGTAGCAGCGAAAGGTCCCCTGCTGGCTCCAGAGGTAAGGTGGCCTCAATCTGGGGAGGGGTTTGTGTaGGCCAGAGGCCAGGTGGTG | + |
|
Preference number: 4 (lower is better) Translates to: GVAAKGPLLAPEVRWPQSGEGFV*ARGQVV Trigger: CACCACCTGGCCTCTGGCTCACACAAACCCCTCCCC...AGATTGAGGCCACCTTACCTCTGGAGCCAGCAGGGGACCTTTCGCTGCTACACC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000226563.2 |
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| CDS-3UTR GCA 90 bp | GGTAGCTGGTGTAGCAGCGAAAGGTCCCCTGCTGGCTCCAGAGGTAAGGTGGCCCTCTTGGTAGCAGCCTaGACAGCAGCTGAGGCAGCG | + |
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Preference number: 4 (lower is better) Translates to: GSWCSSERSPAGSRGKVALLVAA*TAAEAA Trigger: CGCTGCCTCAGCTGCTGTGCAGGCTGCTACCAAGAG...GGCCACCTTACCTCTGGAGCCAGCAGGGGACCTTTCGCTGCTACACCAGCTACC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000047218.5 ENSMUST00000226563.2 |
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| CDS-3UTR GCA 90 bp | CCCGGTAGCTGGTGTAGCAGCGAAAGGTCCCCTGCTGGCTCCAGAGGTAAGGTGCTCTTGGTAGCAGCCTaGACAGCAGCTGAGGCAGCG | + |
|
Preference number: 4 (lower is better) Translates to: PGSWCSSERSPAGSRGKVLLVAA*TAAEAA Trigger: CGCTGCCTCAGCTGCTGTGCAGGCTGCTACCAAGAG...CACCTTACCTCTGGAGCCAGCAGGGGACCTTTCGCTGCTACACCAGCTACCGGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000047218.5 ENSMUST00000226563.2 |
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| CDS-3UTR GCA 90 bp | GCAGCGAAAGGTCCCCTGCTGGCTCCAGAGGTAAGGTGGCCTCAATCTGCAGACCCCGAAGGCTCTGGCTaGGGCCTAGAGGCTTCTCTC | + |
|
Preference number: 4 (lower is better) Translates to: AAKGPLLAPEVRWPQSADPEGSG*GLEASL Trigger: GAGAGAAGCCTCTAGGCCGCAGCCAGAGCCTTCGGG...GTCTGCAGATTGAGGCCACCTTACCTCTGGAGCCAGCAGGGGACCTTTCGCTGC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000047218.5 ENSMUST00000226563.2 |
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| CDS-3UTR CCA 90 bp | CAGAACCCCGGTAGCTGGTGTAGCAGCGAAAGGTCCCCTGCTGGCTCCAGAGGTGGGGATCTTGGTAGGTaGGGACAGGGGTGTCAGGGA | + |
|
Preference number: 4 (lower is better) Translates to: QNPGSWCSSERSPAGSRGGDLGR*GQGCQG Trigger: TCCCTGACACCCCTGTCCCCACCTACCAAGATCCCC...ACCTCTGGAGCCAGCAGGGGACCTTTCGCTGCTACACCAGCTACCGGGGTTCTG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 2 transcripts: ENSMUST00000047218.5 ENSMUST00000226563.2 |
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| CDS-3UTR TCA 90 bp | CCCGGTAGCTGGTGTAGCAGCGAAAGGTCCCCTGCTGGCTCCAGAGGTAAGGTGTCAATGGCTTCCTCTTaGCCACCCGAAGGCTCTGGC | + |
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Preference number: 4 (lower is better) Translates to: PGSWCSSERSPAGSRGKVSMASS*PPEGSG Trigger: GCCAGAGCCTTCGGGTGGTCAAGAGGAAGCCATTGA...CACCTTACCTCTGGAGCCAGCAGGGGACCTTTCGCTGCTACACCAGCTACCGGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000047218.5 ENSMUST00000226563.2 |
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| CDS-3UTR CCA 90 bp | AACCCCGGTAGCTGGTGTAGCAGCGAAAGGTCCCCTGCTGGCTCCAGAGGTAAGGGGGATCTTGGTAGGTaGGGACAGGGGTGTCAGGGA | + |
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Preference number: 4 (lower is better) Translates to: NPGSWCSSERSPAGSRGKGDLGR*GQGCQG Trigger: TCCCTGACACCCCTGTCCCCACCTACCAAGATCCCC...CTTACCTCTGGAGCCAGCAGGGGACCTTTCGCTGCTACACCAGCTACCGGGGTT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 2 transcripts: ENSMUST00000047218.5 ENSMUST00000226563.2 |
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| CDS-3UTR TCA 90 bp | TGTAGCAGCGAAAGGTCCCCTGCTGGCTCCAGAGGTAAGGTGGCCTCAATCTGCAGCCTGCACAGCAGCTaGGGCAGCGATGTTGAGGCT | + |
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Preference number: 4 (lower is better) Translates to: CSSERSPAGSRGKVASICSLHSS*GSDVEA Trigger: AGCCTCAACATCGCTGCCTCAGCTGCTGTGCAGGCT...GCAGATTGAGGCCACCTTACCTCTGGAGCCAGCAGGGGACCTTTCGCTGCTACA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000047218.5 ENSMUST00000226563.2 |
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| CDS-3UTR TCA 90 bp | GCAGCGAAAGGTCCCCTGCTGGCTCCAGAGGTAAGGTGGCCTCAATCTGCAGACTCAATGGCTTCCTCTTaGCCACCCGAAGGCTCTGGC | + |
|
Preference number: 4 (lower is better) Translates to: AAKGPLLAPEVRWPQSADSMASS*PPEGSG Trigger: GCCAGAGCCTTCGGGTGGTCAAGAGGAAGCCATTGA...GTCTGCAGATTGAGGCCACCTTACCTCTGGAGCCAGCAGGGGACCTTTCGCTGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000047218.5 ENSMUST00000226563.2 |
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| CDS-3UTR TCA 90 bp | GGTAGCTGGTGTAGCAGCGAAAGGTCCCCTGCTGGCTCCAGAGGTAAGGTGGCCCTAGCTGTCCATGTCTaGGGGCATGGCCTTTTTCCG | + |
|
Preference number: 4 (lower is better) Translates to: GSWCSSERSPAGSRGKVALAVHV*GHGLFP Trigger: CGGAAAAAGGCCATGCCCTCAGACATGGACAGCTAG...GGCCACCTTACCTCTGGAGCCAGCAGGGGACCTTTCGCTGCTACACCAGCTACC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000047218.5 ENSMUST00000226563.2 |
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| CDS-3UTR GCA 90 bp | CCCGGTAGCTGGTGTAGCAGCGAAAGGTCCCCTGCTGGCTCCAGAGGTAAGGTGATAGCTGCGCTCCTTTaGCTGCACGATACACGCGTC | + |
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Preference number: 4 (lower is better) Translates to: PGSWCSSERSPAGSRGKVIAALL*LHDTRV Trigger: GACGCGTGTATCGTGCAGGCAAAGGAGCGCAGCTAT...CACCTTACCTCTGGAGCCAGCAGGGGACCTTTCGCTGCTACACCAGCTACCGGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000047218.5 ENSMUST00000226563.2 |
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| CDS-3UTR TCA 90 bp | GCAGCGAAAGGTCCCCTGCTGGCTCCAGAGGTAAGGTGGCCTCAATCTGCAGACCCCCTTGGTGTAAGGTaGGAGCAGCCACAGCACAAA | + |
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Preference number: 4 (lower is better) Translates to: AAKGPLLAPEVRWPQSADPLGVR*EQPQHK Trigger: TTTGTGCTGTGGCTGCTCTCACCTTACACCAAGGGG...GTCTGCAGATTGAGGCCACCTTACCTCTGGAGCCAGCAGGGGACCTTTCGCTGC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000047218.5 ENSMUST00000226563.2 |
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| CDS-3UTR GCA 90 bp | AGCAGCGAAAGGTCCCCTGCTGGCTCCAGAGGTAAGGTGGCCTCAATCTGCAGACTGCGCTCCTTTGCCTaGACGATACACGCGTCGATC | + |
|
Preference number: 4 (lower is better) Translates to: SSERSPAGSRGKVASICRLRSFA*TIHASI Trigger: GATCGACGCGTGTATCGTGCAGGCAAAGGAGCGCAG...TCTGCAGATTGAGGCCACCTTACCTCTGGAGCCAGCAGGGGACCTTTCGCTGCT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000047218.5 ENSMUST00000226563.2 |
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| CDS-3UTR GCA 90 bp | GGTAGCTGGTGTAGCAGCGAAAGGTCCCCTGCTGGCTCCAGAGGTAAGGTGGCCGCATGGTTTCATAGCTaGGCTCCTTTGCCTGCACGA | + |
|
Preference number: 4 (lower is better) Translates to: GSWCSSERSPAGSRGKVAAWFHS*APLPAR Trigger: TCGTGCAGGCAAAGGAGCGCAGCTATGAAACCATGC...GGCCACCTTACCTCTGGAGCCAGCAGGGGACCTTTCGCTGCTACACCAGCTACC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000047218.5 ENSMUST00000226563.2 |
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| CDS-3UTR CCA 90 bp | TGGTGTAGCAGCGAAAGGTCCCCTGCTGGCTCCAGAGGTAAGGTGGCCTCAATCCCATGTCTGAGGGCATaGCCTTTTTCCGGGTTCGGA | + |
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Preference number: 4 (lower is better) Translates to: WCSSERSPAGSRGKVASIPCLRA*PFSGFG Trigger: TCCGAACCCGGAAAAAGGCCATGCCCTCAGACATGG...GATTGAGGCCACCTTACCTCTGGAGCCAGCAGGGGACCTTTCGCTGCTACACCA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000047218.5 ENSMUST00000226563.2 |
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| CDS-3UTR TCA 90 bp | GCAGCGAAAGGTCCCCTGCTGGCTCCAGAGGTAAGGTGGCCTCAATCTGCAGACACAGCATGCCAAATATaGGCACTACCAGGCGACAGA | + |
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Preference number: 4 (lower is better) Translates to: AAKGPLLAPEVRWPQSADTACQI*ALPGDR Trigger: TCTGTCGCCTGGTAGTGCTCATATTTGGCATGCTGT...GTCTGCAGATTGAGGCCACCTTACCTCTGGAGCCAGCAGGGGACCTTTCGCTGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000047218.5 ENSMUST00000226563.2 |
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| CDS-3UTR GCA 90 bp | GTAGCTGGTGTAGCAGCGAAAGGTCCCCTGCTGGCTCCAGAGGTAAGGTGGCCTATAGAGCGCAGGTCTTaGATAGAGAAACTCCGCAGC | + |
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Preference number: 4 (lower is better) Translates to: VAGVAAKGPLLAPEVRWPIERRS*IEKLRS Trigger: GCTGCGGAGTTTCTCTATGCAAGACCTGCGCTCTAT...AGGCCACCTTACCTCTGGAGCCAGCAGGGGACCTTTCGCTGCTACACCAGCTAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000047218.5 ENSMUST00000226563.2 |
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| CDS-3UTR TCA 90 bp | TGGTGTAGCAGCGAAAGGTCCCCTGCTGGCTCCAGAGGTAAGGTGGCCTCAATCACAGCATGCCAAATATaGGCACTACCAGGCGACAGA | + |
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Preference number: 4 (lower is better) Translates to: WCSSERSPAGSRGKVASITACQI*ALPGDR Trigger: TCTGTCGCCTGGTAGTGCTCATATTTGGCATGCTGT...GATTGAGGCCACCTTACCTCTGGAGCCAGCAGGGGACCTTTCGCTGCTACACCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000047218.5 ENSMUST00000226563.2 |
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| CDS-3UTR TCA 90 bp | GCAGCGAAAGGTCCCCTGCTGGCTCCAGAGGTAAGGTGGCCTCAATCTGCAGACAGGTTTCTGCTGCCATaGAGATCGCAAAGACAATCC | + |
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Preference number: 4 (lower is better) Translates to: AAKGPLLAPEVRWPQSADRFLLP*RSQRQS Trigger: GGATTGTCTTTGCGATCTTCATGGCAGCAGAAACCT...GTCTGCAGATTGAGGCCACCTTACCTCTGGAGCCAGCAGGGGACCTTTCGCTGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000047218.5 ENSMUST00000226563.2 |
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| CDS-3UTR GCA 90 bp | CCTCACTCACCAACACGAAACATGCAGCTAGTGTACGTAAACACACACACACACCATCCTCTGTGTCACTaGCCTGCAGGCCGCCTGGCC | + |
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Preference number: 4 (lower is better) Translates to: PHSPTRNMQLVYVNTHTHHPLCH*PAGRLA Trigger: GGCCAGGCGGCCTGCAGGGCAGTGACACAGAGGATG...GTGTGTGTGTGTGTTTACGTACACTAGCTGCATGTTTCGTGTTGGTGAGTGAGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047218.5 |
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| CDS-3UTR GCA 90 bp | CCTCACTCACCAACACGAAACATGCAGCTAGTGTACGTAAACACACACACACACCCCGAAGGCTCTGGCTaGGGCCTAGAGGCTTCTCTC | + |
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Preference number: 4 (lower is better) Translates to: PHSPTRNMQLVYVNTHTHPEGSG*GLEASL Trigger: GAGAGAAGCCTCTAGGCCGCAGCCAGAGCCTTCGGG...GTGTGTGTGTGTGTTTACGTACACTAGCTGCATGTTTCGTGTTGGTGAGTGAGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047218.5 |
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| CDS-3UTR TCA 90 bp | AACCCCGGTAGCTGGTGTAGCAGCGAAAGGTCCCCTGCTGGCTCCAGAGGTAAGGCACAAAAGCCATCTTaGACTCGTAATAAAACGGGA | + |
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Preference number: 4 (lower is better) Translates to: NPGSWCSSERSPAGSRGKAQKPS*TRNKTG Trigger: TCCCGTTTTATTACGAGTTCAAGATGGCTTTTGTGC...CTTACCTCTGGAGCCAGCAGGGGACCTTTCGCTGCTACACCAGCTACCGGGGTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 2 transcripts: ENSMUST00000047218.5 ENSMUST00000226563.2 |
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| CDS-3UTR GCA 90 bp | TGGTGTAGCAGCGAAAGGTCCCCTGCTGGCTCCAGAGGTAAGGTGGCCTCAATCATTCTCGAATGTTCTTaGTCTTCACGGCCTTGTAGG | + |
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Preference number: 4 (lower is better) Translates to: WCSSERSPAGSRGKVASIILECS*SSRPCR Trigger: CCTACAAGGCCGTGAAGAGCAAGAACATTCGAGAAT...GATTGAGGCCACCTTACCTCTGGAGCCAGCAGGGGACCTTTCGCTGCTACACCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000047218.5 ENSMUST00000226563.2 |
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| CDS-3UTR TCA 90 bp | CCTCACTCACCAACACGAAACATGCAGCTAGTGTACGTAAACACACACACACACCCCCTTGGTGTAAGGTaGGAGCAGCCACAGCACAAA | + |
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Preference number: 4 (lower is better) Translates to: PHSPTRNMQLVYVNTHTHPLGVR*EQPQHK Trigger: TTTGTGCTGTGGCTGCTCTCACCTTACACCAAGGGG...GTGTGTGTGTGTGTTTACGTACACTAGCTGCATGTTTCGTGTTGGTGAGTGAGG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000047218.5 |
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| CDS-3UTR GCA 90 bp | GGAATGAACACAGCTGGTTGGACTTTTGGTTTCGTCGGTAGGGACTGGTGGGGCATTCTCGAATGTTCTTaGTCTTCACGGCCTTGTAGG | + |
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Preference number: 4 (lower is better) Translates to: GMNTAGWTFGFVGRDWWGILECS*SSRPCR Trigger: CCTACAAGGCCGTGAAGAGCAAGAACATTCGAGAAT...GCCCCACCAGTCCCTACCGACGAAACCAAAAGTCCAACCAGCTGTGTTCATTCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000047218.5 |
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| CDS-3UTR GCA 90 bp | ACACACACACACACACACACCAGGCCTTGGAAAAGGCTGTCAAGTATTTTGAAGCTGCGCTCCTTTGCCTaGACGATACACGCGTCGATC | + |
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Preference number: 4 (lower is better) Translates to: THTHTHTRPWKRLSSILKLRSFA*TIHASI Trigger: GATCGACGCGTGTATCGTGCAGGCAAAGGAGCGCAG...CTTCAAAATACTTGACAGCCTTTTCCAAGGCCTGGTGTGTGTGTGTGTGTGTGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000047218.5 |
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| CDS-3UTR GCA 90 bp | CCTCACTCACCAACACGAAACATGCAGCTAGTGTACGTAAACACACACACACACGCATGGTTTCATAGCTaGGCTCCTTTGCCTGCACGA | + |
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Preference number: 4 (lower is better) Translates to: PHSPTRNMQLVYVNTHTHAWFHS*APLPAR Trigger: TCGTGCAGGCAAAGGAGCGCAGCTATGAAACCATGC...GTGTGTGTGTGTGTTTACGTACACTAGCTGCATGTTTCGTGTTGGTGAGTGAGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047218.5 |
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| CDS-3UTR TCA 90 bp | GCTGTCAAGTATTTTGAAGGACAAGAAGGAATGAACACAGCTGGTTGGACTTTTAGCCTGCACAGCAGCTaGGGCAGCGATGTTGAGGCT | + |
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Preference number: 4 (lower is better) Translates to: AVKYFEGQEGMNTAGWTFSLHSS*GSDVEA Trigger: AGCCTCAACATCGCTGCCTCAGCTGCTGTGCAGGCT...AAAAGTCCAACCAGCTGTGTTCATTCCTTCTTGTCCTTCAAAATACTTGACAGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000047218.5 |
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| CDS-3UTR CCA 90 bp | AAGTATTTTGAAGGACAAGAAGGAATGAACACAGCTGGTTGGACTTTTGGTTTCGCAGGCTGGCCCCCTTaGTGTAAGGTGAGAGCAGCC | + |
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Preference number: 4 (lower is better) Translates to: KYFEGQEGMNTAGWTFGFAGWPP*CKVRAA Trigger: GGCTGCTCTCACCTTACACCAAGGGGGCCAGCCTGC...GAAACCAAAAGTCCAACCAGCTGTGTTCATTCCTTCTTGTCCTTCAAAATACTT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000047218.5 |
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| CDS-3UTR TCA 90 bp | CACACACACACACACACCAGGCCTTGGAAAAGGCTGTCAAGTATTTTGAAGGACAGGTTTCTGCTGCCATaGAGATCGCAAAGACAATCC | + |
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Preference number: 4 (lower is better) Translates to: HTHTHTRPWKRLSSILKDRFLLP*RSQRQS Trigger: GGATTGTCTTTGCGATCTTCATGGCAGCAGAAACCT...GTCCTTCAAAATACTTGACAGCCTTTTCCAAGGCCTGGTGTGTGTGTGTGTGTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000047218.5 |
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| CDS-3UTR GCA 90 bp | ACACACACACACACACACACCAGGCCTTGGAAAAGGCTGTCAAGTATTTTGAAGATAGAGCGCAGGTCTTaGATAGAGAAACTCCGCAGC | + |
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Preference number: 4 (lower is better) Translates to: THTHTHTRPWKRLSSILKIERRS*IEKLRS Trigger: GCTGCGGAGTTTCTCTATGCAAGACCTGCGCTCTAT...CTTCAAAATACTTGACAGCCTTTTCCAAGGCCTGGTGTGTGTGTGTGTGTGTGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000047218.5 |
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| CDS-3UTR TCA 90 bp | ATAAAAATATTCATAAGCCTGACCTCACTCACCAACACGAAACATGCAGCTAGTCTAGCTGTCCATGTCTaGGGGCATGGCCTTTTTCCG | + |
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Preference number: 4 (lower is better) Translates to: IKIFISLTSLTNTKHAASLAVHV*GHGLFP Trigger: CGGAAAAAGGCCATGCCCTCAGACATGGACAGCTAG...ACTAGCTGCATGTTTCGTGTTGGTGAGTGAGGTCAGGCTTATGAATATTTTTAT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000047218.5 |
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| CDS TCA 90 bp | AGGGGTTTGTGTGAGCCAGAGGCCAGGTGGTGGTGGTGGTGGTGGTaGGGCCCTTCCCAACCCCATGGCCTGCCAATCCTTGGGCCGGAC | + |
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Preference number: 5 (lower is better) Translates to: RGLCEPEARWWWWWW*GPSQPHGLPILGPD Trigger: GTCCGGCCCAAGGATTGGCAGGCCATGGGGTTGGGAAGGGCCTCACCACCACCACCACCACCACCTGGCCTCTGGCTCACACAAACCCCT 66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000226563.2 |
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| CDS CCA 90 bp | GTGCCCTCTCGAGTCAATGGCTTCCTCTTGACCACCCGAAGGCTCTaGCTGCGGCCTAGAGGCTTCTCTCGGGGCCGAACAGGTGGCTGG | + |
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Preference number: 5 (lower is better) Translates to: VPSRVNGFLLTTRRL*LRPRGFSRGRTGGW Trigger: CCAGCCACCTGTTCGGCCCCGAGAGAAGCCTCTAGGCCGCAGCCAGAGCCTTCGGGTGGTCAAGAGGAAGCCATTGACTCGAGAGGGCAC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000047218.5 ENSMUST00000226563.2 |
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| CDS TCA 90 bp | CCTTCAGGGAGCGTGAGGTGCCCTCTCGAGTCAATGGCTTCCTCTTaGCCACCCGAAGGCTCTGGCTGCGGCCTAGAGGCTTCTCTCGGG | + |
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Preference number: 5 (lower is better) Translates to: PSGSVRCPLESMASS*PPEGSGCGLEASLG Trigger: CCCGAGAGAAGCCTCTAGGCCGCAGCCAGAGCCTTCGGGTGGTCAAGAGGAAGCCATTGACTCGAGAGGGCACCTCACGCTCCCTGAAGG 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000047218.5 ENSMUST00000226563.2 |
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| CDS TCA 90 bp | CTTCTCTCGGGGCCGAACAGGTGGCTGGGGGACGATCTCATTGTCTaGCCAACACTCATCCTCTGTGTCACTGCCCTGCAGGCCGCCTGG | + |
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Preference number: 5 (lower is better) Translates to: LLSGPNRWLGDDLIV*PTLILCVTALQAAW Trigger: CCAGGCGGCCTGCAGGGCAGTGACACAGAGGATGAGTGTTGGTCAGACAATGAGATCGTCCCCCAGCCACCTGTTCGGCCCCGAGAGAAG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000047218.5 ENSMUST00000226563.2 |
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| CDS-3UTR CAA 90 bp | GGTAGCTGGTGTAGCAGCGAAAGGTCCCCTGCTGGCTCCAGAGGTAAGGTGGCCCATAGCTGCGCTCCTTaGCCTGCACGATACACGCGT | + |
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Preference number: 5 (lower is better) Translates to: GSWCSSERSPAGSRGKVAHSCAP*PARYTR Trigger: ACGCGTGTATCGTGCAGGCAAAGGAGCGCAGCTATG...GGCCACCTTACCTCTGGAGCCAGCAGGGGACCTTTCGCTGCTACACCAGCTACC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000047218.5 ENSMUST00000226563.2 |
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| CDS-3UTR CAA 90 bp | AACCCCGGTAGCTGGTGTAGCAGCGAAAGGTCCCCTGCTGGCTCCAGAGGTAAGGTCAATGGCTTCCTCTaGACCACCCGAAGGCTCTGG | + |
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Preference number: 5 (lower is better) Translates to: NPGSWCSSERSPAGSRGKVNGFL*TTRRLW Trigger: CCAGAGCCTTCGGGTGGTCAAGAGGAAGCCATTGAC...CTTACCTCTGGAGCCAGCAGGGGACCTTTCGCTGCTACACCAGCTACCGGGGTT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000047218.5 ENSMUST00000226563.2 |
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| CDS-3UTR CAA 90 bp | GGTAGCTGGTGTAGCAGCGAAAGGTCCCCTGCTGGCTCCAGAGGTAAGGTGGCCGATAGAGCGCAGGTCTaGCATAGAGAAACTCCGCAG | + |
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Preference number: 5 (lower is better) Translates to: GSWCSSERSPAGSRGKVADRAQV*HRETPQ Trigger: CTGCGGAGTTTCTCTATGCAAGACCTGCGCTCTATC...GGCCACCTTACCTCTGGAGCCAGCAGGGGACCTTTCGCTGCTACACCAGCTACC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000047218.5 ENSMUST00000226563.2 |
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| CDS-3UTR CAA 90 bp | CCCGGTAGCTGGTGTAGCAGCGAAAGGTCCCCTGCTGGCTCCAGAGGTAAGGTGTGGGGGACGATCTCATaGTCTGACCAACACTCATCC | + |
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Preference number: 5 (lower is better) Translates to: PGSWCSSERSPAGSRGKVWGTIS*SDQHSS Trigger: GGATGAGTGTTGGTCAGACAATGAGATCGTCCCCCA...CACCTTACCTCTGGAGCCAGCAGGGGACCTTTCGCTGCTACACCAGCTACCGGG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000047218.5 ENSMUST00000226563.2 |
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| CDS-3UTR CAA 90 bp | CAGAACCCCGGTAGCTGGTGTAGCAGCGAAAGGTCCCCTGCTGGCTCCAGAGGTTGGGGGACGATCTCATaGTCTGACCAACACTCATCC | + |
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Preference number: 5 (lower is better) Translates to: QNPGSWCSSERSPAGSRGWGTIS*SDQHSS Trigger: GGATGAGTGTTGGTCAGACAATGAGATCGTCCCCCA...ACCTCTGGAGCCAGCAGGGGACCTTTCGCTGCTACACCAGCTACCGGGGTTCTG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000047218.5 ENSMUST00000226563.2 |
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| CDS-3UTR CAA 90 bp | TGTAGCAGCGAAAGGTCCCCTGCTGGCTCCAGAGGTAAGGTGGCCTCAATCTGCGATAGAGCGCAGGTCTaGCATAGAGAAACTCCGCAG | + |
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Preference number: 5 (lower is better) Translates to: CSSERSPAGSRGKVASICDRAQV*HRETPQ Trigger: CTGCGGAGTTTCTCTATGCAAGACCTGCGCTCTATC...GCAGATTGAGGCCACCTTACCTCTGGAGCCAGCAGGGGACCTTTCGCTGCTACA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000047218.5 ENSMUST00000226563.2 |
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| CDS-3UTR CAA 90 bp | ACACACACACACACACACACCAGGCCTTGGAAAAGGCTGTCAAGTATTTTGAAGGTCAATGGCTTCCTCTaGACCACCCGAAGGCTCTGG | + |
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Preference number: 5 (lower is better) Translates to: THTHTHTRPWKRLSSILKVNGFL*TTRRLW Trigger: CCAGAGCCTTCGGGTGGTCAAGAGGAAGCCATTGAC...CTTCAAAATACTTGACAGCCTTTTCCAAGGCCTGGTGTGTGTGTGTGTGTGTGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000047218.5 |
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| CDS CAA 90 bp | ACCTTCAGGGAGCGTGAGGTGCCCTCTCGAGTCAATGGCTTCCTCTaGACCACCCGAAGGCTCTGGCTGCGGCCTAGAGGCTTCTCTCGG | + |
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Preference number: 6 (lower is better) Translates to: TFREREVPSRVNGFL*TTRRLWLRPRGFSR Trigger: CCGAGAGAAGCCTCTAGGCCGCAGCCAGAGCCTTCGGGTGGTCAAGAGGAAGCCATTGACTCGAGAGGGCACCTCACGCTCCCTGAAGGT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000047218.5 ENSMUST00000226563.2 |
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| CDS CCA 72 bp | ACACTCATCCTCTGTGTCACTGCCCTGCAGGCCGCCTaGCCGGTATCCAATAGGGGGTCTACGTCGGGGTAC | + |
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Preference number: 6 (lower is better) Translates to: TLILCVTALQAA*PVSNRGSTSGY Trigger: GTACCCCGACGTAGACCCCCTATTGGATACCGGCCAGGCGGCCTGCAGGGCAGTGACACAGAGGATGAGTGT 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000047218.5 ENSMUST00000226563.2 |
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| CDS CCA 72 bp | CGAGTCAATGGCTTCCTCTTGACCACCCGAAGGCTCTaGCTGCGGCCTAGAGGCTTCTCTCGGGGCCGAACA | + |
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Preference number: 6 (lower is better) Translates to: RVNGFLLTTRRL*LRPRGFSRGRT Trigger: TGTTCGGCCCCGAGAGAAGCCTCTAGGCCGCAGCCAGAGCCTTCGGGTGGTCAAGAGGAAGCCATTGACTCG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000047218.5 ENSMUST00000226563.2 |
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| CDS CAA 90 bp | AGAGGCTTCTCTCGGGGCCGAACAGGTGGCTGGGGGACGATCTCATaGTCTGACCAACACTCATCCTCTGTGTCACTGCCCTGCAGGCCG | + |
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Preference number: 6 (lower is better) Translates to: RGFSRGRTGGWGTIS*SDQHSSSVSLPCRP Trigger: CGGCCTGCAGGGCAGTGACACAGAGGATGAGTGTTGGTCAGACAATGAGATCGTCCCCCAGCCACCTGTTCGGCCCCGAGAGAAGCCTCT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000047218.5 ENSMUST00000226563.2 |
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| CDS CCA 72 bp | CGGCCTAGAGGCTTCTCTCGGGGCCGAACAGGTGGCTaGGGGACGATCTCATTGTCTGACCAACACTCATCC | + |
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Preference number: 6 (lower is better) Translates to: RPRGFSRGRTGG*GTISLSDQHSS Trigger: GGATGAGTGTTGGTCAGACAATGAGATCGTCCCCCAGCCACCTGTTCGGCCCCGAGAGAAGCCTCTAGGCCG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000047218.5 ENSMUST00000226563.2 |
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| CDS GCA 72 bp | GTGGGGACAGGGGTGTCAGGGATAGAGCGCAGGTCTTaGATAGAGAAACTCCGCAGCCTTCCAGCTAGAGCG | + |
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Preference number: 6 (lower is better) Translates to: VGTGVSGIERRS*IEKLRSLPARA Trigger: CGCTCTAGCTGGAAGGCTGCGGAGTTTCTCTATGCAAGACCTGCGCTCTATCCCTGACACCCCTGTCCCCAC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000047218.5 ENSMUST00000226563.2 |
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| CDS TCA 72 bp | AGCGCCTTGACTCTTGGTAGCAGCCTGCACAGCAGCTaGGGCAGCGATGTTGAGGCTCCGCTTCCCAAAACT | + |
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Preference number: 6 (lower is better) Translates to: SALTLGSSLHSS*GSDVEAPLPKT Trigger: AGTTTTGGGAAGCGGAGCCTCAACATCGCTGCCTCAGCTGCTGTGCAGGCTGCTACCAAGAGTCAAGGCGCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000047218.5 ENSMUST00000226563.2 |
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| CDS GCA 72 bp | TTGTCTGACCAACACTCATCCTCTGTGTCACTGCCCTaGAGGCCGCCTGGCCGGTATCCAATAGGGGGTCTA | + |
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Preference number: 6 (lower is better) Translates to: LSDQHSSSVSLP*RPPGRYPIGGL Trigger: TAGACCCCCTATTGGATACCGGCCAGGCGGCCTGCAGGGCAGTGACACAGAGGATGAGTGTTGGTCAGACAA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000047218.5 ENSMUST00000226563.2 |
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| CDS TCA 72 bp | ATAGAGAAACTCCGCAGCCTTCCAGCTAGAGCGCCTTaGCTCTTGGTAGCAGCCTGCACAGCAGCTGAGGCA | + |
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Preference number: 6 (lower is better) Translates to: IEKLRSLPARAP*LLVAACTAAEA Trigger: TGCCTCAGCTGCTGTGCAGGCTGCTACCAAGAGTCAAGGCGCTCTAGCTGGAAGGCTGCGGAGTTTCTCTAT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000047218.5 ENSMUST00000226563.2 |
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| CDS CAA 72 bp | TTGGTAGCAGCCTGCACAGCAGCTGAGGCAGCGATGTaGAGGCTCCGCTTCCCAAAACTGAGCATGGTTTCA | + |
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Preference number: 6 (lower is better) Translates to: LVAACTAAEAAM*RLRFPKLSMVS Trigger: TGAAACCATGCTCAGTTTTGGGAAGCGGAGCCTCAACATCGCTGCCTCAGCTGCTGTGCAGGCTGCTACCAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000047218.5 ENSMUST00000226563.2 |
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