Pregenerated sensors for REEP2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000038555Ensembl transcript IDs: ENSMUST00000043484.8
Found 64 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GGGGACGGCCATGGTCAGCAAGGCACTGGATGGGCAGCGTGGGACTaGAGCAGCAAAAAGAGCAGCGCTGGCTGGCCACGGAGCCTCCAC | + |
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Preference number: 1 (lower is better) Translates to: GDGHGQQGTGWAAWD*SSKKSSAGWPRSLH Trigger: GTGGAGGCTCCGTGGCCAGCCAGCGCTGCTCTTTTTGCTGCTCCAGTCCCACGCTGCCCATCCAGTGCCTTGCTGACCATGGCCGTCCCC 67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000043484.8 |
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| 3UTR CCA 90 bp | CTGAGAGGGGACGGCCATGGTCAGCAAGGCACTGGATGGGCAGCGTaGGACTGGAGCAGCAAAAAGAGCAGCGCTGGCTGGCCACGGAGC | + |
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Preference number: 1 (lower is better) Translates to: LRGDGHGQQGTGWAA*DWSSKKSSAGWPRS Trigger: GCTCCGTGGCCAGCCAGCGCTGCTCTTTTTGCTGCTCCAGTCCCACGCTGCCCATCCAGTGCCTTGCTGACCATGGCCGTCCCCTCTCAG 66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000043484.8 |
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| 3UTR GCA 90 bp | CAAGGTCCAGTGTGGGCACCGTGGAGTTGGGAGCCTCCCAGCTCCTaGATCTCCTTCCCTGCACAGGTACCACTTGGCCCCATTGAGGCT | + |
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Preference number: 1 (lower is better) Translates to: QGPVWAPWSWEPPSS*ISFPAQVPLGPIEA Trigger: AGCCTCAATGGGGCCAAGTGGTACCTGTGCAGGGAAGGAGATGCAGGAGCTGGGAGGCTCCCAACTCCACGGTGCCCACACTGGACCTTG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043484.8 |
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| 3UTR CCA 90 bp | GGATGGGCAGCGTGGGACTGGAGCAGCAAAAAGAGCAGCGCTGGCTaGCCACGGAGCCTCCACCTCCTCAAGGGCTTAGTCATCACCTCT | + |
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Preference number: 1 (lower is better) Translates to: GWAAWDWSSKKSSAG*PRSLHLLKGLVITS Trigger: AGAGGTGATGACTAAGCCCTTGAGGAGGTGGAGGCTCCGTGGCCAGCCAGCGCTGCTCTTTTTGCTGCTCCAGTCCCACGCTGCCCATCC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000043484.8 |
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| 3UTR CCA 90 bp | CACTGGATGGGCAGCGTGGGACTGGAGCAGCAAAAAGAGCAGCGCTaGCTGGCCACGGAGCCTCCACCTCCTCAAGGGCTTAGTCATCAC | + |
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Preference number: 1 (lower is better) Translates to: HWMGSVGLEQQKEQR*LATEPPPPQGLSHH Trigger: GTGATGACTAAGCCCTTGAGGAGGTGGAGGCTCCGTGGCCAGCCAGCGCTGCTCTTTTTGCTGCTCCAGTCCCACGCTGCCCATCCAGTG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000043484.8 |
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| 3UTR GCA 90 bp | CAATGCTGGCCTGGCCGTGCTGCTTATTCAAAGCCCTTGTCTCCATaGATAGCTGCGCCTGAGGAACACCCTCCTCCCAGGCCTGCCCAG | + |
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Preference number: 1 (lower is better) Translates to: QCWPGRAAYSKPLSP*IAAPEEHPPPRPAQ Trigger: CTGGGCAGGCCTGGGAGGAGGGTGTTCCTCAGGCGCAGCTATGCATGGAGACAAGGGCTTTGAATAAGCAGCACGGCCAGGCCAGCATTG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043484.8 |
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| 3UTR TCA 90 bp | TCCCCTTTACAGGAGAGGAAAGGAGCCATCTTGGCAGGCCCTCTGTaGTGGAGCCTAGGAGCAGAGGAGTCCAGCTTACGTGGGCATGAA | + |
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Preference number: 1 (lower is better) Translates to: SPLQERKGAILAGPL*WSLGAEESSLRGHE Trigger: TTCATGCCCACGTAAGCTGGACTCCTCTGCTCCTAGGCTCCATCACAGAGGGCCTGCCAAGATGGCTCCTTTCCTCTCCTGTAAAGGGGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043484.8 |
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| 3UTR TCA 90 bp | TCTGTGATGGAGCCTAGGAGCAGAGGAGTCCAGCTTACGTGGGCATaGATGTGTAAAAGGGATCAAGGATGGAAGGGTAGGGAGGAGTCC | + |
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Preference number: 1 (lower is better) Translates to: SVMEPRSRGVQLTWA*MCKRDQGWKGREES Trigger: GGACTCCTCCCTACCCTTCCATCCTTGATCCCTTTTACACATTCATGCCCACGTAAGCTGGACTCCTCTGCTCCTAGGCTCCATCACAGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043484.8 |
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| 3UTR CCA 90 bp | TCTCTTTTGGTAGAATACACAGCCCTACCAGCTGCAATGCTGGCCTaGCCGTGCTGCTTATTCAAAGCCCTTGTCTCCATGCATAGCTGC | + |
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Preference number: 1 (lower is better) Translates to: SLLVEYTALPAAMLA*PCCLFKALVSMHSC Trigger: GCAGCTATGCATGGAGACAAGGGCTTTGAATAAGCAGCACGGCCAGGCCAGCATTGCAGCTGGTAGGGCTGTGTATTCTACCAAAAGAGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043484.8 |
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| 3UTR CCA 90 bp | GAATGTGTAAAAGGGATCAAGGATGGAAGGGTAGGGAGGAGTCCCTaGGAGCCTCGTTCTGTCAAGGGCTTGAGTTCTGAGGTTCAGAGA | + |
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Preference number: 1 (lower is better) Translates to: ECVKGIKDGRVGRSP*EPRSVKGLSSEVQR Trigger: TCTCTGAACCTCAGAACTCAAGCCCTTGACAGAACGAGGCTCCCAGGGACTCCTCCCTACCCTTCCATCCTTGATCCCTTTTACACATTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043484.8 |
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| 3UTR-3UTR CCA 90 bp | GGTGGGATGCATCCCCTTTACAGGAGAGGAAAGGAGCCATCTTGGCAGGCCCTCCCGGAGGCATGTTCATaGGAAGGGGGTGCTGGGGAC | + |
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Preference number: 2 (lower is better) Translates to: GGMHPLYRRGKEPSWQALPEACS*EGGAGD Trigger: GTCCCCAGCACCCCCTTCCCATGAACATGCCTCCGG...GAGGGCCTGCCAAGATGGCTCCTTTCCTCTCCTGTAAAGGGGATGCATCCCACC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000043484.8 |
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| 3UTR-3UTR CCA 90 bp | CCCTCTCACCCAACCTCCCTAACACGCACACCCTTAGCATCTCACCTCTCTTTTCTAGTGGCTCACTGTTaGAGGGGCCAGGGCTGCAGC | + |
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Preference number: 2 (lower is better) Translates to: PSHPTSLTRTPLASHLSFLVAHC*RGQGCS Trigger: GCTGCAGCCCTGGCCCCTCCAACAGTGAGCCACTAG...AAAAGAGAGGTGAGATGCTAAGGGTGTGCGTGTTAGGGAGGTTGGGTGAGAGGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043484.8 |
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| 3UTR-3UTR TCA 90 bp | GGCTTGAGTTCTGAGGTTCAGAGACCAGCAGGGGTGGATAAAGAGGAAGAAAGAATGCATAGCTGCGCCTaGGGAACACCCTCCTCCCAG | + |
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Preference number: 2 (lower is better) Translates to: GLSSEVQRPAGVDKEEERMHSCA*GTPSSQ Trigger: CTGGGAGGAGGGTGTTCCTCAGGCGCAGCTATGCAT...TCTTTCTTCCTCTTTATCCACCCCTGCTGGTCTCTGAACCTCAGAACTCAAGCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043484.8 |
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| 3UTR CCA 72 bp | GGCAGCGTGGGACTGGAGCAGCAAAAAGAGCAGCGCTaGCTGGCCACGGAGCCTCCACCTCCTCAAGGGCTT | + |
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Preference number: 3 (lower is better) Translates to: GSVGLEQQKEQR*LATEPPPPQGL Trigger: AAGCCCTTGAGGAGGTGGAGGCTCCGTGGCCAGCCAGCGCTGCTCTTTTTGCTGCTCCAGTCCCACGCTGCC 65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000043484.8 |
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| 3UTR CCA 72 bp | CATGGTCAGCAAGGCACTGGATGGGCAGCGTGGGACTaGAGCAGCAAAAAGAGCAGCGCTGGCTGGCCACGG | + |
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Preference number: 3 (lower is better) Translates to: HGQQGTGWAAWD*SSKKSSAGWPR Trigger: CCGTGGCCAGCCAGCGCTGCTCTTTTTGCTGCTCCAGTCCCACGCTGCCCATCCAGTGCCTTGCTGACCATG 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000043484.8 |
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| 3UTR CCA 72 bp | GACGGCCATGGTCAGCAAGGCACTGGATGGGCAGCGTaGGACTGGAGCAGCAAAAAGAGCAGCGCTGGCTGG | + |
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Preference number: 3 (lower is better) Translates to: DGHGQQGTGWAA*DWSSKKSSAGW Trigger: CCAGCCAGCGCTGCTCTTTTTGCTGCTCCAGTCCCACGCTGCCCATCCAGTGCCTTGCTGACCATGGCCGTC 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000043484.8 |
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| 3UTR CCA 72 bp | GCGGGTCTGAAACACTTGGGGCTAGTGGCTCACTGTTaGAGGGGCCAGGGCTGCAGCTCTTCTCCGTGCTTG | + |
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Preference number: 3 (lower is better) Translates to: AGLKHLGLVAHC*RGQGCSSSPCL Trigger: CAAGCACGGAGAAGAGCTGCAGCCCTGGCCCCTCCAACAGTGAGCCACTAGCCCCAAGTGTTTCAGACCCGC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043484.8 |
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| 3UTR CCA 72 bp | CTGAGAGGGGACGGCCATGGTCAGCAAGGCACTGGATaGGCAGCGTGGGACTGGAGCAGCAAAAAGAGCAGC | + |
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Preference number: 3 (lower is better) Translates to: LRGDGHGQQGTG*AAWDWSSKKSS Trigger: GCTGCTCTTTTTGCTGCTCCAGTCCCACGCTGCCCATCCAGTGCCTTGCTGACCATGGCCGTCCCCTCTCAG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000043484.8 |
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| 3UTR-3UTR CAA 90 bp | TACCAGCTGCAATGCTGGCCTGGCCGTGCTGCTTATTCAAAGCCCTTGTCTCCAGCTAGTGGCTCACTGTaGGAGGGGCCAGGGCTGCAG | + |
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Preference number: 3 (lower is better) Translates to: YQLQCWPGRAAYSKPLSPASGSL*EGPGLQ Trigger: CTGCAGCCCTGGCCCCTCCAACAGTGAGCCACTAGC...TGGAGACAAGGGCTTTGAATAAGCAGCACGGCCAGGCCAGCATTGCAGCTGGTA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043484.8 |
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| 3UTR TCA 72 bp | CAGGAGAGGAAAGGAGCCATCTTGGCAGGCCCTCTGTaGTGGAGCCTAGGAGCAGAGGAGTCCAGCTTACGT | + |
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Preference number: 3 (lower is better) Translates to: QERKGAILAGPL*WSLGAEESSLR Trigger: ACGTAAGCTGGACTCCTCTGCTCCTAGGCTCCATCACAGAGGGCCTGCCAAGATGGCTCCTTTCCTCTCCTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043484.8 |
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| 3UTR GCA 72 bp | ACAGCCCTACCAGCTGCAATGCTGGCCTGGCCGTGCTaGTTATTCAAAGCCCTTGTCTCCATGCATAGCTGC | + |
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Preference number: 3 (lower is better) Translates to: TALPAAMLAWPC*LFKALVSMHSC Trigger: GCAGCTATGCATGGAGACAAGGGCTTTGAATAAGCAGCACGGCCAGGCCAGCATTGCAGCTGGTAGGGCTGT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043484.8 |
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| 3UTR GCA 72 bp | TACACAGCCCTACCAGCTGCAATGCTGGCCTGGCCGTaGTGCTTATTCAAAGCCCTTGTCTCCATGCATAGC | + |
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Preference number: 3 (lower is better) Translates to: YTALPAAMLAWP*CLFKALVSMHS Trigger: GCTATGCATGGAGACAAGGGCTTTGAATAAGCAGCACGGCCAGGCCAGCATTGCAGCTGGTAGGGCTGTGTA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043484.8 |
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| 3UTR GCA 72 bp | AGGAGGTGTCAGAGTTTCGTTTATTGGCTCATCCAGTaGCAAGGTCCAGTGTGGGCACCGTGGAGTTGGGAG | + |
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Preference number: 3 (lower is better) Translates to: RRCQSFVYWLIQ*QGPVWAPWSWE Trigger: CTCCCAACTCCACGGTGCCCACACTGGACCTTGGCACTGGATGAGCCAATAAACGAAACTCTGACACCTCCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043484.8 |
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| 3UTR CCA 72 bp | AAAGGGATCAAGGATGGAAGGGTAGGGAGGAGTCCCTaGGAGCCTCGTTCTGTCAAGGGCTTGAGTTCTGAG | + |
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Preference number: 3 (lower is better) Translates to: KGIKDGRVGRSP*EPRSVKGLSSE Trigger: CTCAGAACTCAAGCCCTTGACAGAACGAGGCTCCCAGGGACTCCTCCCTACCCTTCCATCCTTGATCCCTTT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043484.8 |
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| 3UTR TCA 72 bp | GAGCCTAGGAGCAGAGGAGTCCAGCTTACGTGGGCATaGATGTGTAAAAGGGATCAAGGATGGAAGGGTAGG | + |
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Preference number: 3 (lower is better) Translates to: EPRSRGVQLTWA*MCKRDQGWKGR Trigger: CCTACCCTTCCATCCTTGATCCCTTTTACACATTCATGCCCACGTAAGCTGGACTCCTCTGCTCCTAGGCTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043484.8 |
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| 3UTR CAA 72 bp | TGCGGGTCTGAAACACTTGGGGCTAGTGGCTCACTGTaGGAGGGGCCAGGGCTGCAGCTCTTCTCCGTGCTT | + |
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Preference number: 4 (lower is better) Translates to: CGSETLGASGSL*EGPGLQLFSVL Trigger: AAGCACGGAGAAGAGCTGCAGCCCTGGCCCCTCCAACAGTGAGCCACTAGCCCCAAGTGTTTCAGACCCGCA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043484.8 |
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| CDS-3UTR TCA 90 bp | AGTTCTGACCAGGGTTTGCTTGGCACAGGAAGGGGACCCCATGGCAAGGTGGGACCTTGGCAGCAGCTGTaGCTGCAGCATTGGCAGCCA | + |
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Preference number: 4 (lower is better) Translates to: SSDQGLLGTGRGPHGKVGPWQQL*LQHWQP Trigger: TGGCTGCCAATGCTGCAGTCACAGCTGCTGCCAAGG...TCCCACCTTGCCATGGGGTCCCCTTCCTGTGCCAAGCAAACCCTGGTCAGAACT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043484.8 |
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| CDS-3UTR GCA 90 bp | GGTCAGCAAGGCACTGGATGGGCAGCGTGGGACTGGAGCAGCAAAAAGAGCAGCGGCAGCAGCTGTGACTaGAGCATTGGCAGCCAGGTT | + |
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Preference number: 4 (lower is better) Translates to: GQQGTGWAAWDWSSKKSSGSSCD*SIGSQV Trigger: AACCTGGCTGCCAATGCTGCAGTCACAGCTGCTGCC...GCTGCTCTTTTTGCTGCTCCAGTCCCACGCTGCCCATCCAGTGCCTTGCTGACC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000043484.8 |
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| 3UTR CAA 72 bp | GGGAGGAGTCCCTGGGAGCCTCGTTCTGTCAAGGGCTaGAGTTCTGAGGTTCAGAGACCAGCAGGGGTGGAT | + |
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Preference number: 4 (lower is better) Translates to: GRSPWEPRSVKG*SSEVQRPAGVD Trigger: ATCCACCCCTGCTGGTCTCTGAACCTCAGAACTCAAGCCCTTGACAGAACGAGGCTCCCAGGGACTCCTCCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043484.8 |
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| CDS-3UTR TCA 90 bp | GGTGGGATGCATCCCCTTTACAGGAGAGGAAAGGAGCCATCTTGGCAGGCCCTCACAGGGTGCCAAAGATaGGCACCACCAGGCGAGAGA | + |
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Preference number: 4 (lower is better) Translates to: GGMHPLYRRGKEPSWQALTGCQR*APPGER Trigger: TCTCTCGCCTGGTGGTGCTCATCTTTGGCACCCTGT...GAGGGCCTGCCAAGATGGCTCCTTTCCTCTCCTGTAAAGGGGATGCATCCCACC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043484.8 |
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| CDS-3UTR GCA 90 bp | GGTGGGATGCATCCCCTTTACAGGAGAGGAAAGGAGCCATCTTGGCAGGCCCTCGGTTCAGGCCCCTCTTaGCCACCCTCATCATCGTCT | + |
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Preference number: 4 (lower is better) Translates to: GGMHPLYRRGKEPSWQALGSGPS*PPSSSS Trigger: AGACGATGATGAGGGTGGGCAAGAGGGGCCTGAACC...GAGGGCCTGCCAAGATGGCTCCTTTCCTCTCCTGTAAAGGGGATGCATCCCACC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043484.8 |
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| CDS-3UTR CCA 90 bp | ATGGTCAGCAAGGCACTGGATGGGCAGCGTGGGACTGGAGCAGCAAAAAGAGCAGGGTCTTCAGTGTCTTaGAAGCCGGCGGCTCAGCTC | + |
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Preference number: 4 (lower is better) Translates to: MVSKALDGQRGTGAAKRAGSSVS*KPAAQL Trigger: GAGCTGAGCCGCCGGCTTCCAAGACACTGAAGACCC...TGCTCTTTTTGCTGCTCCAGTCCCACGCTGCCCATCCAGTGCCTTGCTGACCAT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000043484.8 |
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| CDS-3UTR CCA 90 bp | GGCAGGCCCTCTGTGATGGAGCCTAGGAGCAGAGGAGTCCAGCTTACGTGGGCACTTGTTGGACAGTGTTaGGTGCACGAACTTGCGGTA | + |
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Preference number: 4 (lower is better) Translates to: GRPSVMEPRSRGVQLTWALVGQC*VHELAV Trigger: TACCGCAAGTTCGTGCACCCAACACTGTCCAACAAG...TGCCCACGTAAGCTGGACTCCTCTGCTCCTAGGCTCCATCACAGAGGGCCTGCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043484.8 |
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| CDS-3UTR CCA 90 bp | GCAGCTCTTCTCCGTGCTTGTCCTAGAGATGGAGGGGTGCGGGGAGCCGAGCCTTCTCCTTTTCCTTGTTaGACAGTGTTGGGTGCACGA | + |
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Preference number: 4 (lower is better) Translates to: AALLRACPRDGGVRGAEPSPFPC*TVLGAR Trigger: TCGTGCACCCAACACTGTCCAACAAGGAAAAGGAGA...AGGCTCGGCTCCCCGCACCCCTCCATCTCTAGGACAAGCACGGAGAAGAGCTGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000043484.8 |
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| CDS-3UTR CCA 90 bp | GGTCAGCAAGGCACTGGATGGGCAGCGTGGGACTGGAGCAGCAAAAAGAGCAGCCAGAACTCTTCTTCTTaGGCCGGGTCTTCAGTGTCT | + |
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Preference number: 4 (lower is better) Translates to: GQQGTGWAAWDWSSKKSSQNSSS*AGSSVS Trigger: AGACACTGAAGACCCGGCCCAAGAAGAAGAGTTCTG...GCTGCTCTTTTTGCTGCTCCAGTCCCACGCTGCCCATCCAGTGCCTTGCTGACC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000043484.8 |
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| CDS-3UTR GCA 90 bp | GGCTTGAGTTCTGAGGTTCAGAGACCAGCAGGGGTGGATAAAGAGGAAGAAAGACGGCCATCTGGCCCCTaGAGCGGTAACGCATCCTCA | + |
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Preference number: 4 (lower is better) Translates to: GLSSEVQRPAGVDKEEERRPSGP*SGNASS Trigger: TGAGGATGCGTTACCGCTGCAGGGGCCAGATGGCCG...TCTTTCTTCCTCTTTATCCACCCCTGCTGGTCTCTGAACCTCAGAACTCAAGCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043484.8 |
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| CDS-3UTR GCA 90 bp | TGCTGGCCTGGCCGTGCTGCTTATTCAAAGCCCTTGTCTCCATGCATAGCTGCGTTTGGTCCTCTTGGGTaGCTTGTCTCCCAGGTCATC | + |
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Preference number: 4 (lower is better) Translates to: CWPGRAAYSKPLSPCIAAFGPLG*LVSQVI Trigger: GATGACCTGGGAGACAAGGCACCCAAGAGGACCAAA...CGCAGCTATGCATGGAGACAAGGGCTTTGAATAAGCAGCACGGCCAGGCCAGCA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043484.8 |
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| CDS-3UTR CCA 90 bp | CGTGCTGCTTATTCAAAGCCCTTGTCTCCATGCATAGCTGCGCCTGAGGAACACTGCGGTAGAGGACACTaGAGCCCTTGGTGTAAGGGG | + |
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Preference number: 4 (lower is better) Translates to: RAAYSKPLSPCIAAPEEHCGRGH*SPWCKG Trigger: CCCCTTACACCAAGGGCTCCAGTGTCCTCTACCGCA...GTGTTCCTCAGGCGCAGCTATGCATGGAGACAAGGGCTTTGAATAAGCAGCACG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043484.8 |
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| CDS-3UTR CCA 90 bp | GGAGCAGAGGAGTCCAGCTTACGTGGGCATGAATGTGTAAAAGGGATCAAGGATCTCTGTCCGGGGATCTaGCTGGCTTGTGCTAGACCT | + |
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Preference number: 4 (lower is better) Translates to: GAEESSLRGHECVKGIKDLCPGI*LACARP Trigger: AGGTCTAGCACAAGCCAGCCAGATCCCCGGACAGAG...ATCCTTGATCCCTTTTACACATTCATGCCCACGTAAGCTGGACTCCTCTGCTCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043484.8 |
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| CDS-3UTR GCA 90 bp | GGCTTGAGTTCTGAGGTTCAGAGACCAGCAGGGGTGGATAAAGAGGAAGAAAGATTGGGTGCACGAACTTaGGGTAGAGGACACTGGAGC | + |
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Preference number: 4 (lower is better) Translates to: GLSSEVQRPAGVDKEEERLGART*GRGHWS Trigger: GCTCCAGTGTCCTCTACCGCAAGTTCGTGCACCCAA...TCTTTCTTCCTCTTTATCCACCCCTGCTGGTCTCTGAACCTCAGAACTCAAGCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043484.8 |
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| CDS-3UTR CCA 90 bp | CTAACACGCACACCCTTAGCATCTCACCTCTCTTTTGGTAGAATACACAGCCCTGGACACTGGAGCCCTTaGTGTAAGGGGACAACAGCC | + |
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Preference number: 4 (lower is better) Translates to: LTRTPLASHLSFGRIHSPGHWSP*CKGTTA Trigger: GGCTGTTGTCCCCTTACACCAAGGGCTCCAGTGTCC...AGGGCTGTGTATTCTACCAAAAGAGAGGTGAGATGCTAAGGGTGTGCGTGTTAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043484.8 |
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| CDS-3UTR TCA 90 bp | GGAGCAGAGGAGTCCAGCTTACGTGGGCATGAATGTGTAAAAGGGATCAAGGATCATCCTCATCTCGAATaGGAGTCAGGTCCTGCATGC | + |
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Preference number: 4 (lower is better) Translates to: GAEESSLRGHECVKGIKDHPHLE*ESGPAC Trigger: GCATGCAGGACCTGACTCTCATTCGAGATGAGGATG...ATCCTTGATCCCTTTTACACATTCATGCCCACGTAAGCTGGACTCCTCTGCTCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043484.8 |
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| CDS-3UTR TCA 90 bp | CCCTTAGCATCTCACCTCTCTTTTGGTAGAATACACAGCCCTACCAGCTGCAATTGTCTCGAGCTTGTGTaGTGTATTCGTCGATCTCCT | + |
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Preference number: 4 (lower is better) Translates to: PLASHLSFGRIHSPTSCNCLELV*CIRRSP Trigger: AGGAGATCGACGAATACATCACACAAGCTCGAGACA...ATTGCAGCTGGTAGGGCTGTGTATTCTACCAAAAGAGAGGTGAGATGCTAAGGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043484.8 |
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| CDS-3UTR CAA 90 bp | GGCAGGCCCTCTGTGATGGAGCCTAGGAGCAGAGGAGTCCAGCTTACGTGGGCAACCCACGGGGCCGGGTaGGAGGCGGCCATCTGGCCC | + |
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Preference number: 5 (lower is better) Translates to: GRPSVMEPRSRGVQLTWATHGAG*EAAIWP Trigger: GGGCCAGATGGCCGCCTCCAACCCGGCCCCGTGGGT...TGCCCACGTAAGCTGGACTCCTCTGCTCCTAGGCTCCATCACAGAGGGCCTGCC 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043484.8 |
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| CDS-3UTR CAA 90 bp | GGGGCCAGGGCTGCAGCTCTTCTCCGTGCTTGTCCTAGAGATGGAGGGGTGCGGCGGGTCTTCAGTGTCTaGGAAGCCGGCGGCTCAGCT | + |
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Preference number: 5 (lower is better) Translates to: GARAAALLRACPRDGGVRRVFSV*EAGGSA Trigger: AGCTGAGCCGCCGGCTTCCAAGACACTGAAGACCCG...CCGCACCCCTCCATCTCTAGGACAAGCACGGAGAAGAGCTGCAGCCCTGGCCCC 66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043484.8 |
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| CDS CCA 90 bp | TCTCCTAAGTCCTCAATAGTGTCCAGGAGACCCACGGGGCCGGGTTaGAGGCGGCCATCTGGCCCCTGCAGCGGTAACGCATCCTCATCT | + |
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Preference number: 5 (lower is better) Translates to: SPKSSIVSRRPTGPG*RRPSGPCSGNASSS Trigger: AGATGAGGATGCGTTACCGCTGCAGGGGCCAGATGGCCGCCTCCAACCCGGCCCCGTGGGTCTCCTGGACACTATTGAGGACTTAGGAGA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043484.8 |
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| CDS-3UTR CAA 90 bp | GGTCAGCAAGGCACTGGATGGGCAGCGTGGGACTGGAGCAGCAAAAAGAGCAGCAGGTTCAGGCCCCTCTaGCCCACCCTCATCATCGTC | + |
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Preference number: 5 (lower is better) Translates to: GQQGTGWAAWDWSSKKSSRFRPL*PTLIIV Trigger: GACGATGATGAGGGTGGGCAAGAGGGGCCTGAACCT...GCTGCTCTTTTTGCTGCTCCAGTCCCACGCTGCCCATCCAGTGCCTTGCTGACC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000043484.8 |
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| CDS-3UTR CAA 90 bp | ATGGTCAGCAAGGCACTGGATGGGCAGCGTGGGACTGGAGCAGCAAAAAGAGCAAGCACCCCCTGGCCCTaGGCAGCAGCTGTGACTGCA | + |
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Preference number: 5 (lower is better) Translates to: MVSKALDGQRGTGAAKRASTPWP*AAAVTA Trigger: TGCAGTCACAGCTGCTGCCAAGGGCCAGGGGGTGCT...TGCTCTTTTTGCTGCTCCAGTCCCACGCTGCCCATCCAGTGCCTTGCTGACCAT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000043484.8 |
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| CDS-3UTR CAA 90 bp | CTGTTGGAGGGGCCAGGGCTGCAGCTCTTCTCCGTGCTTGTCCTAGAGATGGAGGTCCTCTTGGGTGCCTaGTCTCCCAGGTCATCTTCT | + |
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Preference number: 5 (lower is better) Translates to: LLEGPGLQLFSVLVLEMEVLLGA*SPRSSS Trigger: AGAAGATGACCTGGGAGACAAGGCACCCAAGAGGAC...CTCCATCTCTAGGACAAGCACGGAGAAGAGCTGCAGCCCTGGCCCCTCCAACAG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043484.8 |
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| CDS-3UTR CAA 90 bp | GTTCTGACCAGGGTTTGCTTGGCACAGGAAGGGGACCCCATGGCAAGGTGGGATCCTTGTTGGACAGTGTaGGGTGCACGAACTTGCGGT | + |
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Preference number: 5 (lower is better) Translates to: VLTRVCLAQEGDPMARWDPCWTV*GARTCG Trigger: ACCGCAAGTTCGTGCACCCAACACTGTCCAACAAGG...ATCCCACCTTGCCATGGGGTCCCCTTCCTGTGCCAAGCAAACCCTGGTCAGAAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043484.8 |
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| CDS-3UTR CAA 90 bp | GCAGCTCTTCTCCGTGCTTGTCCTAGAGATGGAGGGGTGCGGGGAGCCGAGCCTGCTCTTGTCTCGAGCTaGTGTGATGTATTCGTCGAT | + |
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Preference number: 5 (lower is better) Translates to: AALLRACPRDGGVRGAEPALVSS*CDVFVD Trigger: ATCGACGAATACATCACACAAGCTCGAGACAAGAGC...AGGCTCGGCTCCCCGCACCCCTCCATCTCTAGGACAAGCACGGAGAAGAGCTGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043484.8 |
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| CDS-3UTR CAA 90 bp | GTCAGAGTTTCGTTTATTGGCTCATCCAGTGCCAAGGTCCAGTGTGGGCACCGTGCTGTGACTGCAGCATaGGCAGCCAGGTTCAGGCCC | + |
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Preference number: 5 (lower is better) Translates to: VRVSFIGSSSAKVQCGHRAVTAA*AARFRP Trigger: GGGCCTGAACCTGGCTGCCAATGCTGCAGTCACAGC...ACGGTGCCCACACTGGACCTTGGCACTGGATGAGCCAATAAACGAAACTCTGAC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043484.8 |
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| CDS-3UTR CAA 90 bp | GGTGGGATGCATCCCCTTTACAGGAGAGGAAAGGAGCCATCTTGGCAGGCCCTCCCAGAACTCTTCTTCTaGGGCCGGGTCTTCAGTGTC | + |
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Preference number: 5 (lower is better) Translates to: GGMHPLYRRGKEPSWQALPELFF*GRVFSV Trigger: GACACTGAAGACCCGGCCCAAGAAGAAGAGTTCTGG...GAGGGCCTGCCAAGATGGCTCCTTTCCTCTCCTGTAAAGGGGATGCATCCCACC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043484.8 |
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| CDS-3UTR CAA 90 bp | GTTCTGACCAGGGTTTGCTTGGCACAGGAAGGGGACCCCATGGCAAGGTGGGATATCTCCTTTTCCTTGTaGGACAGTGTTGGGTGCACG | + |
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Preference number: 5 (lower is better) Translates to: VLTRVCLAQEGDPMARWDISFSL*DSVGCT Trigger: CGTGCACCCAACACTGTCCAACAAGGAAAAGGAGAT...ATCCCACCTTGCCATGGGGTCCCCTTCCTGTGCCAAGCAAACCCTGGTCAGAAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000043484.8 |
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| CDS CCA 90 bp | TTGTCTCCCAGGTCATCTTCTGAGGTCTCTGTCCGGGGATCTGGCTaGCTTGTGCTAGACCTTAGACTTAGGGCAGGCTCATCTCCTAAG | + |
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Preference number: 5 (lower is better) Translates to: LSPRSSSEVSVRGSG*LVLDLRLRAGSSPK Trigger: CTTAGGAGATGAGCCTGCCCTAAGTCTAAGGTCTAGCACAAGCCAGCCAGATCCCCGGACAGAGACCTCAGAAGATGACCTGGGAGACAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043484.8 |
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| CDS GCA 72 bp | CCCACGGGGCCGGGTTGGAGGCGGCCATCTGGCCCCTaGAGCGGTAACGCATCCTCATCTCGAATGAGAGTC | + |
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Preference number: 6 (lower is better) Translates to: PTGPGWRRPSGP*SGNASSSRMRV Trigger: GACTCTCATTCGAGATGAGGATGCGTTACCGCTGCAGGGGCCAGATGGCCGCCTCCAACCCGGCCCCGTGGG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043484.8 |
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| CDS CCA 72 bp | TCCTCAATAGTGTCCAGGAGACCCACGGGGCCGGGTTaGAGGCGGCCATCTGGCCCCTGCAGCGGTAACGCA | + |
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Preference number: 6 (lower is better) Translates to: SSIVSRRPTGPG*RRPSGPCSGNA Trigger: TGCGTTACCGCTGCAGGGGCCAGATGGCCGCCTCCAACCCGGCCCCGTGGGTCTCCTGGACACTATTGAGGA 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043484.8 |
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| CDS CAA 72 bp | ACCCCCTGGCCCTTGGCAGCAGCTGTGACTGCAGCATaGGCAGCCAGGTTCAGGCCCCTCTTGCCCACCCTC | + |
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Preference number: 6 (lower is better) Translates to: TPWPLAAAVTAA*AARFRPLLPTL Trigger: GAGGGTGGGCAAGAGGGGCCTGAACCTGGCTGCCAATGCTGCAGTCACAGCTGCTGCCAAGGGCCAGGGGGT 67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000043484.8 |
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| CDS CAA 90 bp | TCCGACAGCACCCCCTGGCCCTTGGCAGCAGCTGTGACTGCAGCATaGGCAGCCAGGTTCAGGCCCCTCTTGCCCACCCTCATCATCGTC | + |
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Preference number: 6 (lower is better) Translates to: SDSTPWPLAAAVTAA*AARFRPLLPTLIIV Trigger: GACGATGATGAGGGTGGGCAAGAGGGGCCTGAACCTGGCTGCCAATGCTGCAGTCACAGCTGCTGCCAAGGGCCAGGGGGTGCTGTCGGA 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000043484.8 |
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| CDS CCA 72 bp | AGGTCATCTTCTGAGGTCTCTGTCCGGGGATCTGGCTaGCTTGTGCTAGACCTTAGACTTAGGGCAGGCTCA | + |
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Preference number: 6 (lower is better) Translates to: RSSSEVSVRGSG*LVLDLRLRAGS Trigger: TGAGCCTGCCCTAAGTCTAAGGTCTAGCACAAGCCAGCCAGATCCCCGGACAGAGACCTCAGAAGATGACCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043484.8 |
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| CDS CAA 90 bp | GTCTTCAGTGTCTTGGAAGCCGGCGGCTCAGCTCTGGGTACTTTTTaGATAGGTTTGGTCCTCTTGGGTGCCTTGTCTCCCAGGTCATCT | + |
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Preference number: 6 (lower is better) Translates to: VFSVLEAGGSALGTF*IGLVLLGALSPRSS Trigger: AGATGACCTGGGAGACAAGGCACCCAAGAGGACCAAACCTATCAAAAAAGTACCCAGAGCTGAGCCGCCGGCTTCCAAGACACTGAAGAC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000043484.8 |
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| CDS CCA 72 bp | GTATTCGTCGATCTCCTTTTCCTTGTTGGACAGTGTTaGGTGCACGAACTTGCGGTAGAGGACACTGGAGCC | + |
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Preference number: 6 (lower is better) Translates to: VFVDLLFLVGQC*VHELAVEDTGA Trigger: GGCTCCAGTGTCCTCTACCGCAAGTTCGTGCACCCAACACTGTCCAACAAGGAAAAGGAGATCGACGAATAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043484.8 |
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| CDS CAA 72 bp | TGTATTCGTCGATCTCCTTTTCCTTGTTGGACAGTGTaGGGTGCACGAACTTGCGGTAGAGGACACTGGAGC | + |
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Preference number: 6 (lower is better) Translates to: CIRRSPFPCWTV*GARTCGRGHWS Trigger: GCTCCAGTGTCCTCTACCGCAAGTTCGTGCACCCAACACTGTCCAACAAGGAAAAGGAGATCGACGAATACA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043484.8 |
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| CDS TCA 72 bp | TCATCATCGTCTCATAGCTCTTGTCTCGAGCTTGTGTaGTGTATTCGTCGATCTCCTTTTCCTTGTTGGACA | + |
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Preference number: 6 (lower is better) Translates to: SSSSHSSCLELV*CIRRSPFPCWT Trigger: TGTCCAACAAGGAAAAGGAGATCGACGAATACATCACACAAGCTCGAGACAAGAGCTATGAGACGATGATGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043484.8 |
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