Pregenerated sensors for REC114 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000074269Ensembl transcript IDs: ENSMUST00000098674.6, ENSMUST00000186592.2
Found 54 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR TCA 90 bp | AATACTCTTTATTCAAATACCTTCAGTTCCTTAGTTGCATACATGTGCAGGGCTGGGCCTTGGCTCTGCTaGAGCTCCTGGGTGGTGCTG | + |
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Preference number: 4 (lower is better) Translates to: NTLYSNTFSSLVAYMCRAGPWLC*SSWVVL Trigger: CAGCACCACCCAGGAGCTTCAGCAGAGCCAAGGCCC...AGCCCTGCACATGTATGCAACTAAGGAACTGAAGGTATTTGAATAAAGAGTATT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000098674.6 ENSMUST00000186592.2 |
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| CDS-3UTR GCA 90 bp | AATACTCTTTATTCAAATACCTTCAGTTCCTTAGTTGCATACATGTGCAGGGCTAGGGAGGGCCCCTGCTaGAGTGGGTCCTTCCCTTGG | + |
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Preference number: 4 (lower is better) Translates to: NTLYSNTFSSLVAYMCRAREGPC*SGSFPW Trigger: CCAAGGGAAGGACCCACTGCAGCAGGGGCCCTCCCT...AGCCCTGCACATGTATGCAACTAAGGAACTGAAGGTATTTGAATAAAGAGTATT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098674.6 |
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| CDS-3UTR GCA 90 bp | AATACTCTTTATTCAAATACCTTCAGTTCCTTAGTTGCATACATGTGCAGGGCTTACTGGGCCAGGGTCTaGACACAGCCACAGCAGCGC | + |
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Preference number: 4 (lower is better) Translates to: NTLYSNTFSSLVAYMCRAYWARV*TQPQQR Trigger: GCGCTGCTGTGGCTGTGTGCAGACCCTGGCCCAGTA...AGCCCTGCACATGTATGCAACTAAGGAACTGAAGGTATTTGAATAAAGAGTATT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000098674.6 ENSMUST00000186592.2 |
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| CDS-3UTR GCA 90 bp | AATACTCTTTATTCAAATACCTTCAGTTCCTTAGTTGCATACATGTGCAGGGCTGCCATACACACGTGCTaGTCCAGGGTCAGGGAGGGC | + |
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Preference number: 4 (lower is better) Translates to: NTLYSNTFSSLVAYMCRAAIHTC*SRVREG Trigger: GCCCTCCCTGACCCTGGAGCAGCACGTGTGTATGGC...AGCCCTGCACATGTATGCAACTAAGGAACTGAAGGTATTTGAATAAAGAGTATT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098674.6 |
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| CDS-3UTR CCA 90 bp | AATACTCTTTATTCAAATACCTTCAGTTCCTTAGTTGCATACATGTGCAGGGCTGGGCCCCTGCTGCAGTaGGTCCTTCCCTTGGCTTTC | + |
|
Preference number: 4 (lower is better) Translates to: NTLYSNTFSSLVAYMCRAGPLLQ*VLPLAF Trigger: GAAAGCCAAGGGAAGGACCCACTGCAGCAGGGGCCC...AGCCCTGCACATGTATGCAACTAAGGAACTGAAGGTATTTGAATAAAGAGTATT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098674.6 |
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| CDS-3UTR GCA 90 bp | AATACTCTTTATTCAAATACCTTCAGTTCCTTAGTTGCATACATGTGCAGGGCTGAAGCTCCTGGGTGGTaGTGTCAGGCTCCTGAACGG | + |
|
Preference number: 4 (lower is better) Translates to: NTLYSNTFSSLVAYMCRAEAPGW*CQAPER Trigger: CCGTTCAGGAGCCTGACAGCACCACCCAGGAGCTTC...AGCCCTGCACATGTATGCAACTAAGGAACTGAAGGTATTTGAATAAAGAGTATT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000098674.6 ENSMUST00000186592.2 |
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| CDS-3UTR GCA 90 bp | AATACTCTTTATTCAAATACCTTCAGTTCCTTAGTTGCATACATGTGCAGGGCTGCTGCCATACACACGTaGTGCTCCAGGGTCAGGGAG | + |
|
Preference number: 4 (lower is better) Translates to: NTLYSNTFSSLVAYMCRAAAIHT*CSRVRE Trigger: CTCCCTGACCCTGGAGCAGCACGTGTGTATGGCAGC...AGCCCTGCACATGTATGCAACTAAGGAACTGAAGGTATTTGAATAAAGAGTATT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098674.6 |
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| CDS-3UTR GCA 90 bp | AATACTCTTTATTCAAATACCTTCAGTTCCTTAGTTGCATACATGTGCAGGGCTGCCAGGATAGACCCCTaGTGCAGTGGGTCCTTCCCT | + |
|
Preference number: 4 (lower is better) Translates to: NTLYSNTFSSLVAYMCRAARIDP*CSGSFP Trigger: AGGGAAGGACCCACTGCAGCAGGGGTCTATCCTGGC...AGCCCTGCACATGTATGCAACTAAGGAACTGAAGGTATTTGAATAAAGAGTATT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000186592.2 |
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| CDS-3UTR CCA 90 bp | AATACTCTTTATTCAAATACCTTCAGTTCCTTAGTTGCATACATGTGCAGGGCTAGTGGGTCCTTCCCTTaGCTTTCACCTGCCTCCCGG | + |
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Preference number: 4 (lower is better) Translates to: NTLYSNTFSSLVAYMCRASGSFP*LSPASR Trigger: CCGGGAGGCAGGTGAAAGCCAAGGGAAGGACCCACT...AGCCCTGCACATGTATGCAACTAAGGAACTGAAGGTATTTGAATAAAGAGTATT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000098674.6 ENSMUST00000186592.2 |
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| CDS-3UTR GCA 90 bp | AATACTCTTTATTCAAATACCTTCAGTTCCTTAGTTGCATACATGTGCAGGGCTAACACCTGCCCCAGCTaGCATACACACGTGCTGCTC | + |
|
Preference number: 4 (lower is better) Translates to: NTLYSNTFSSLVAYMCRANTCPS*HTHVLL Trigger: GAGCAGCACGTGTGTATGGCAGCTGGGGCAGGTGTT...AGCCCTGCACATGTATGCAACTAAGGAACTGAAGGTATTTGAATAAAGAGTATT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098674.6 |
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| CDS-3UTR GCA 90 bp | AATACTCTTTATTCAAATACCTTCAGTTCCTTAGTTGCATACATGTGCAGGGCTAGGATAGACCCCTGCTaGAGTGGGTCCTTCCCTTGG | + |
|
Preference number: 4 (lower is better) Translates to: NTLYSNTFSSLVAYMCRARIDPC*SGSFPW Trigger: CCAAGGGAAGGACCCACTGCAGCAGGGGTCTATCCT...AGCCCTGCACATGTATGCAACTAAGGAACTGAAGGTATTTGAATAAAGAGTATT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000186592.2 |
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| CDS-3UTR CCA 90 bp | AATACTCTTTATTCAAATACCTTCAGTTCCTTAGTTGCATACATGTGCAGGGCTGCTGAAGCTCCTGGGTaGTGCTGTCAGGCTCCTGAA | + |
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Preference number: 4 (lower is better) Translates to: NTLYSNTFSSLVAYMCRAAEAPG*CCQAPE Trigger: TTCAGGAGCCTGACAGCACCACCCAGGAGCTTCAGC...AGCCCTGCACATGTATGCAACTAAGGAACTGAAGGTATTTGAATAAAGAGTATT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000098674.6 ENSMUST00000186592.2 |
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| CDS-3UTR CCA 90 bp | AATACTCTTTATTCAAATACCTTCAGTTCCTTAGTTGCATACATGTGCAGGGCTAGACCCCTGCTGCAGTaGGTCCTTCCCTTGGCTTTC | + |
|
Preference number: 4 (lower is better) Translates to: NTLYSNTFSSLVAYMCRARPLLQ*VLPLAF Trigger: GAAAGCCAAGGGAAGGACCCACTGCAGCAGGGGTCT...AGCCCTGCACATGTATGCAACTAAGGAACTGAAGGTATTTGAATAAAGAGTATT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000186592.2 |
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| CDS-3UTR TCA 90 bp | AATACTCTTTATTCAAATACCTTCAGTTCCTTAGTTGCATACATGTGCAGGGCTCTTGCTGCCAATGAGTaGAAACCCTTCCAGCAGTGT | + |
|
Preference number: 4 (lower is better) Translates to: NTLYSNTFSSLVAYMCRALAANE*KPFQQC Trigger: ACACTGCTGGAAGGGTTTTCACTCATTGGCAGCAAG...AGCCCTGCACATGTATGCAACTAAGGAACTGAAGGTATTTGAATAAAGAGTATT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098674.6 |
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| CDS-3UTR GCA 90 bp | AATACTCTTTATTCAAATACCTTCAGTTCCTTAGTTGCATACATGTGCAGGGCTCCTTCCAGCAGTGTCTaGCCTTGGGAAATGAAGAAG | + |
|
Preference number: 4 (lower is better) Translates to: NTLYSNTFSSLVAYMCRAPSSSV*PWEMKK Trigger: CTTCTTCATTTCCCAAGGGCAGACACTGCTGGAAGG...AGCCCTGCACATGTATGCAACTAAGGAACTGAAGGTATTTGAATAAAGAGTATT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098674.6 |
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| CDS-3UTR TCA 90 bp | AATACTCTTTATTCAAATACCTTCAGTTCCTTAGTTGCATACATGTGCAGGGCTAGTTCTTGCTGCCAATaGGTGAAAACCCTTCCAGCA | + |
|
Preference number: 4 (lower is better) Translates to: NTLYSNTFSSLVAYMCRASSCCQ*VKTLPA Trigger: TGCTGGAAGGGTTTTCACTCATTGGCAGCAAGAACT...AGCCCTGCACATGTATGCAACTAAGGAACTGAAGGTATTTGAATAAAGAGTATT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098674.6 |
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| CDS-3UTR TCA 90 bp | AATACTCTTTATTCAAATACCTTCAGTTCCTTAGTTGCATACATGTGCAGGGCTTCTGCCCTTGGGAAATaGAGAAGTGACCTGATACAA | + |
|
Preference number: 4 (lower is better) Translates to: NTLYSNTFSSLVAYMCRASALGK*RSDLIQ Trigger: TTGTATCAGGTCACTTCTTCATTTCCCAAGGGCAGA...AGCCCTGCACATGTATGCAACTAAGGAACTGAAGGTATTTGAATAAAGAGTATT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098674.6 |
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| CDS-3UTR TCA 90 bp | AATACTCTTTATTCAAATACCTTCAGTTCCTTAGTTGCATACATGTGCAGGGCTAATGCTGGGAAGTTTTaGTCCATGAGACATAAGCGT | + |
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Preference number: 4 (lower is better) Translates to: NTLYSNTFSSLVAYMCRANAGKF*SMRHKR Trigger: ACGCTTATGTCTCATGGATCAAAACTTCCCAGCATT...AGCCCTGCACATGTATGCAACTAAGGAACTGAAGGTATTTGAATAAAGAGTATT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000098674.6 ENSMUST00000186592.2 |
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| CDS-3UTR GCA 90 bp | AATACTCTTTATTCAAATACCTTCAGTTCCTTAGTTGCATACATGTGCAGGGCTACAGAAGACAGTCCATaGGTCTTACAATCTTCAACC | + |
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Preference number: 4 (lower is better) Translates to: NTLYSNTFSSLVAYMCRATEDSP*VLQSST Trigger: GGTTGAAGATTGTAAGACGCATGGACTGTCTTCTGT...AGCCCTGCACATGTATGCAACTAAGGAACTGAAGGTATTTGAATAAAGAGTATT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098674.6 |
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| CDS-3UTR GCA 90 bp | AATACTCTTTATTCAAATACCTTCAGTTCCTTAGTTGCATACATGTGCAGGGCTCACCTCTTCCACAAATaGTGGGAAGTTTTGATCCAT | + |
|
Preference number: 4 (lower is better) Translates to: NTLYSNTFSSLVAYMCRAHLFHK*WEVLIH Trigger: ATGGATCAAAACTTCCCAGCATTTGTGGAAGAGGTG...AGCCCTGCACATGTATGCAACTAAGGAACTGAAGGTATTTGAATAAAGAGTATT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000098674.6 ENSMUST00000186592.2 |
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| CDS-3UTR CCA 90 bp | AATACTCTTTATTCAAATACCTTCAGTTCCTTAGTTGCATACATGTGCAGGGCTTCCCGGATTCTTCACTaGATTCAAAAACCTTCCATG | + |
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Preference number: 4 (lower is better) Translates to: NTLYSNTFSSLVAYMCRASRILH*IQKPSM Trigger: CATGGAAGGTTTTTGAATCCAGTGAAGAATCCGGGA...AGCCCTGCACATGTATGCAACTAAGGAACTGAAGGTATTTGAATAAAGAGTATT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000098674.6 |
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| CDS-3UTR CCA 90 bp | AATACTCTTTATTCAAATACCTTCAGTTCCTTAGTTGCATACATGTGCAGGGCTCTCTTCCACAAATGCTaGGAAGTTTTGATCCATGAG | + |
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Preference number: 4 (lower is better) Translates to: NTLYSNTFSSLVAYMCRALFHKC*EVLIHE Trigger: CTCATGGATCAAAACTTCCCAGCATTTGTGGAAGAG...AGCCCTGCACATGTATGCAACTAAGGAACTGAAGGTATTTGAATAAAGAGTATT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000098674.6 ENSMUST00000186592.2 |
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| CDS GCA 90 bp | GCTGCCATACACACGTGCTGCTCCAGGGTCAGGGAGGGCCCCTGCTaGAGTGGGTCCTTCCCTTGGCTTTCACCTGCCTCCCGGGGGCCT | + |
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Preference number: 5 (lower is better) Translates to: AAIHTCCSRVREGPC*SGSFPWLSPASRGP Trigger: AGGCCCCCGGGAGGCAGGTGAAAGCCAAGGGAAGGACCCACTGCAGCAGGGGCCCTCCCTGACCCTGGAGCAGCACGTGTGTATGGCAGC 68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000098674.6 |
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| CDS GCA 90 bp | CCAGCTGCCATACACACGTGCTGCTCCAGGGTCAGGGAGGGCCCCTaGTGCAGTGGGTCCTTCCCTTGGCTTTCACCTGCCTCCCGGGGG | + |
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Preference number: 5 (lower is better) Translates to: PAAIHTCCSRVREGP*CSGSFPWLSPASRG Trigger: CCCCCGGGAGGCAGGTGAAAGCCAAGGGAAGGACCCACTGCAGCAGGGGCCCTCCCTGACCCTGGAGCAGCACGTGTGTATGGCAGCTGG 68% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098674.6 |
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| CDS CCA 90 bp | CATACACACGTGCTGCTCCAGGGTCAGGGAGGGCCCCTGCTGCAGTaGGTCCTTCCCTTGGCTTTCACCTGCCTCCCGGGGGCCTTGGCT | + |
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Preference number: 5 (lower is better) Translates to: HTHVLLQGQGGPLLQ*VLPLAFTCLPGALA Trigger: AGCCAAGGCCCCCGGGAGGCAGGTGAAAGCCAAGGGAAGGACCCACTGCAGCAGGGGCCCTCCCTGACCCTGGAGCAGCACGTGTGTATG 67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000098674.6 |
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| CDS CCA 90 bp | GGCGAGGGTCAGCTTCTCTGGCGCCAGGATAGACCCCTGCTGCAGTaGGTCCTTCCCTTGGCTTTCACCTGCCTCCCGGGGGCCTTGGCT | + |
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Preference number: 5 (lower is better) Translates to: GEGQLLWRQDRPLLQ*VLPLAFTCLPGALA Trigger: AGCCAAGGCCCCCGGGAGGCAGGTGAAAGCCAAGGGAAGGACCCACTGCAGCAGGGGTCTATCCTGGCGCCAGAGAAGCTGACCCTCGCC 67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000186592.2 |
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| CDS GCA 90 bp | GTCCTTTCCTGTAGAACACCTGCCCCAGCTGCCATACACACGTGCTaGTCCAGGGTCAGGGAGGGCCCCTGCTGCAGTGGGTCCTTCCCT | + |
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Preference number: 5 (lower is better) Translates to: VLSCRTPAPAAIHTC*SRVREGPCCSGSFP Trigger: AGGGAAGGACCCACTGCAGCAGGGGCCCTCCCTGACCCTGGAGCAGCACGTGTGTATGGCAGCTGGGGCAGGTGTTCTACAGGAAAGGAC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000098674.6 |
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| CDS CCA 90 bp | CCACAGCAGCGCTCCAGCGCCTCTTCCTTGGACTCCCCACTAAACTaGACACGAAACATTCGGCTCTTGTTCTTTATTGTTGTTCCAAAC | + |
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Preference number: 5 (lower is better) Translates to: PQQRSSASSLDSPLN*TRNIRLLFFIVVPN Trigger: GTTTGGAACAACAATAAAGAACAAGAGCCGAATGTTTCGTGTCCAGTTTAGTGGGGAGTCCAAGGAAGAGGCGCTGGAGCGCTGCTGTGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098674.6 |
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| CDS TCA 90 bp | AAACCCTTCCAGCAGTGTCTGCCCTTGGGAAATGAAGAAGTGACCTaGTACAACGATCGTGAGGACAAGACTCCCGGATTCTTCACTGGA | + |
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Preference number: 5 (lower is better) Translates to: KPFQQCLPLGNEEVT*YNDREDKTPGFFTG Trigger: TCCAGTGAAGAATCCGGGAGTCTTGTCCTCACGATCGTTGTATCAGGTCACTTCTTCATTTCCCAAGGGCAGACACTGCTGGAAGGGTTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098674.6 |
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| CDS-3UTR CAA 90 bp | AATACTCTTTATTCAAATACCTTCAGTTCCTTAGTTGCATACATGTGCAGGGCTTGCCTCCCGGGGGCCTaGGCTCTGCTGAAGCTCCTG | + |
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Preference number: 5 (lower is better) Translates to: NTLYSNTFSSLVAYMCRACLPGA*ALLKLL Trigger: CAGGAGCTTCAGCAGAGCCAAGGCCCCCGGGAGGCA...AGCCCTGCACATGTATGCAACTAAGGAACTGAAGGTATTTGAATAAAGAGTATT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000098674.6 ENSMUST00000186592.2 |
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| CDS TCA 90 bp | AGTGAAAACCCTTCCAGCAGTGTCTGCCCTTGGGAAATGAAGAAGTaGCCTGATACAACGATCGTGAGGACAAGACTCCCGGATTCTTCA | + |
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Preference number: 5 (lower is better) Translates to: SENPSSSVCPWEMKK*PDTTIVRTRLPDSS Trigger: TGAAGAATCCGGGAGTCTTGTCCTCACGATCGTTGTATCAGGTCACTTCTTCATTTCCCAAGGGCAGACACTGCTGGAAGGGTTTTCACT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098674.6 |
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| CDS TCA 90 bp | GTCCATGCGTCTTACAATCTTCAACCAGTTCTTGCTGCCAATGAGTaGAAACCCTTCCAGCAGTGTCTGCCCTTGGGAAATGAAGAAGTG | + |
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Preference number: 5 (lower is better) Translates to: VHASYNLQPVLAANE*KPFQQCLPLGNEEV Trigger: CACTTCTTCATTTCCCAAGGGCAGACACTGCTGGAAGGGTTTTCACTCATTGGCAGCAAGAACTGGTTGAAGATTGTAAGACGCATGGAC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098674.6 |
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| CDS-3UTR CAA 90 bp | AATACTCTTTATTCAAATACCTTCAGTTCCTTAGTTGCATACATGTGCAGGGCTCAGTGGGTCCTTCCCTaGGCTTTCACCTGCCTCCCG | + |
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Preference number: 5 (lower is better) Translates to: NTLYSNTFSSLVAYMCRAQWVLP*AFTCLP Trigger: CGGGAGGCAGGTGAAAGCCAAGGGAAGGACCCACTG...AGCCCTGCACATGTATGCAACTAAGGAACTGAAGGTATTTGAATAAAGAGTATT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000098674.6 ENSMUST00000186592.2 |
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| CDS-3UTR CAA 90 bp | AATACTCTTTATTCAAATACCTTCAGTTCCTTAGTTGCATACATGTGCAGGGCTTCCAGCGCCTCTTCCTaGGACTCCCCACTAAACTGG | + |
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Preference number: 5 (lower is better) Translates to: NTLYSNTFSSLVAYMCRASSASS*DSPLNW Trigger: CCAGTTTAGTGGGGAGTCCAAGGAAGAGGCGCTGGA...AGCCCTGCACATGTATGCAACTAAGGAACTGAAGGTATTTGAATAAAGAGTATT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000098674.6 ENSMUST00000186592.2 |
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| CDS-3UTR CAA 90 bp | AATACTCTTTATTCAAATACCTTCAGTTCCTTAGTTGCATACATGTGCAGGGCTATCTTCAACCAGTTCTaGCTGCCAATGAGTGAAAAC | + |
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Preference number: 5 (lower is better) Translates to: NTLYSNTFSSLVAYMCRAIFNQF*LPMSEN Trigger: GTTTTCACTCATTGGCAGCAAGAACTGGTTGAAGAT...AGCCCTGCACATGTATGCAACTAAGGAACTGAAGGTATTTGAATAAAGAGTATT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098674.6 |
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| CDS-3UTR CAA 90 bp | AATACTCTTTATTCAAATACCTTCAGTTCCTTAGTTGCATACATGTGCAGGGCTGGCTCTTGTTCTTTATaGTTGTTCCAAACAGAAGAC | + |
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Preference number: 5 (lower is better) Translates to: NTLYSNTFSSLVAYMCRAGSCSL*LFQTED Trigger: GTCTTCTGTTTGGAACAACAATAAAGAACAAGAGCC...AGCCCTGCACATGTATGCAACTAAGGAACTGAAGGTATTTGAATAAAGAGTATT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098674.6 |
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| CDS CCA 72 bp | GTGCTGCTCCAGGGTCAGGGAGGGCCCCTGCTGCAGTaGGTCCTTCCCTTGGCTTTCACCTGCCTCCCGGGG | + |
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Preference number: 6 (lower is better) Translates to: VLLQGQGGPLLQ*VLPLAFTCLPG Trigger: CCCCGGGAGGCAGGTGAAAGCCAAGGGAAGGACCCACTGCAGCAGGGGCCCTCCCTGACCCTGGAGCAGCAC 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098674.6 |
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| CDS CAA 72 bp | GGTCAGGGAGGGCCCCTGCTGCAGTGGGTCCTTCCCTaGGCTTTCACCTGCCTCCCGGGGGCCTTGGCTCTG | + |
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Preference number: 6 (lower is better) Translates to: GQGGPLLQWVLP*AFTCLPGALAL Trigger: CAGAGCCAAGGCCCCCGGGAGGCAGGTGAAAGCCAAGGGAAGGACCCACTGCAGCAGGGGCCCTCCCTGACC 69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000098674.6 |
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| CDS CAA 72 bp | CGCCAGGATAGACCCCTGCTGCAGTGGGTCCTTCCCTaGGCTTTCACCTGCCTCCCGGGGGCCTTGGCTCTG | + |
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Preference number: 6 (lower is better) Translates to: RQDRPLLQWVLP*AFTCLPGALAL Trigger: CAGAGCCAAGGCCCCCGGGAGGCAGGTGAAAGCCAAGGGAAGGACCCACTGCAGCAGGGGTCTATCCTGGCG 67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000186592.2 |
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| CDS GCA 72 bp | TGTAGAACACCTGCCCCAGCTGCCATACACACGTGCTaGTCCAGGGTCAGGGAGGGCCCCTGCTGCAGTGGG | + |
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Preference number: 6 (lower is better) Translates to: CRTPAPAAIHTC*SRVREGPCCSG Trigger: CCCACTGCAGCAGGGGCCCTCCCTGACCCTGGAGCAGCACGTGTGTATGGCAGCTGGGGCAGGTGTTCTACA 65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000098674.6 |
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| CDS CCA 72 bp | CAGCTTCTCTGGCGCCAGGATAGACCCCTGCTGCAGTaGGTCCTTCCCTTGGCTTTCACCTGCCTCCCGGGG | + |
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Preference number: 6 (lower is better) Translates to: QLLWRQDRPLLQ*VLPLAFTCLPG Trigger: CCCCGGGAGGCAGGTGAAAGCCAAGGGAAGGACCCACTGCAGCAGGGGTCTATCCTGGCGCCAGAGAAGCTG 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000186592.2 |
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| CDS GCA 72 bp | GCGAGGGTCAGCTTCTCTGGCGCCAGGATAGACCCCTaGTGCAGTGGGTCCTTCCCTTGGCTTTCACCTGCC | + |
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Preference number: 6 (lower is better) Translates to: ARVSFSGARIDP*CSGSFPWLSPA Trigger: GGCAGGTGAAAGCCAAGGGAAGGACCCACTGCAGCAGGGGTCTATCCTGGCGCCAGAGAAGCTGACCCTCGC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000186592.2 |
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| CDS GCA 72 bp | AGGGTCAGCTTCTCTGGCGCCAGGATAGACCCCTGCTaGAGTGGGTCCTTCCCTTGGCTTTCACCTGCCTCC | + |
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Preference number: 6 (lower is better) Translates to: RVSFSGARIDPC*SGSFPWLSPAS Trigger: GGAGGCAGGTGAAAGCCAAGGGAAGGACCCACTGCAGCAGGGGTCTATCCTGGCGCCAGAGAAGCTGACCCT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000186592.2 |
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| CDS TCA 72 bp | CCTTCCAGCAGTGTCTGCCCTTGGGAAATGAAGAAGTaGCCTGATACAACGATCGTGAGGACAAGACTCCCG | + |
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Preference number: 6 (lower is better) Translates to: PSSSVCPWEMKK*PDTTIVRTRLP Trigger: CGGGAGTCTTGTCCTCACGATCGTTGTATCAGGTCACTTCTTCATTTCCCAAGGGCAGACACTGCTGGAAGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098674.6 |
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| CDS TCA 72 bp | CAGCAGTGTCTGCCCTTGGGAAATGAAGAAGTGACCTaGTACAACGATCGTGAGGACAAGACTCCCGGATTC | + |
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Preference number: 6 (lower is better) Translates to: QQCLPLGNEEVT*YNDREDKTPGF Trigger: GAATCCGGGAGTCTTGTCCTCACGATCGTTGTATCAGGTCACTTCTTCATTTCCCAAGGGCAGACACTGCTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098674.6 |
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| CDS TCA 72 bp | TGCGTCTTACAATCTTCAACCAGTTCTTGCTGCCAATaGGTGAAAACCCTTCCAGCAGTGTCTGCCCTTGGG | + |
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Preference number: 6 (lower is better) Translates to: CVLQSSTSSCCQ*VKTLPAVSALG Trigger: CCCAAGGGCAGACACTGCTGGAAGGGTTTTCACTCATTGGCAGCAAGAACTGGTTGAAGATTGTAAGACGCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098674.6 |
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| CDS CCA 72 bp | CGCTCCAGCGCCTCTTCCTTGGACTCCCCACTAAACTaGACACGAAACATTCGGCTCTTGTTCTTTATTGTT | + |
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Preference number: 6 (lower is better) Translates to: RSSASSLDSPLN*TRNIRLLFFIV Trigger: AACAATAAAGAACAAGAGCCGAATGTTTCGTGTCCAGTTTAGTGGGGAGTCCAAGGAAGAGGCGCTGGAGCG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098674.6 |
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| CDS CAA 90 bp | CCAAACAGAAGACAGTCCATGCGTCTTACAATCTTCAACCAGTTCTaGCTGCCAATGAGTGAAAACCCTTCCAGCAGTGTCTGCCCTTGG | + |
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Preference number: 6 (lower is better) Translates to: PNRRQSMRLTIFNQF*LPMSENPSSSVCPW Trigger: CCAAGGGCAGACACTGCTGGAAGGGTTTTCACTCATTGGCAGCAAGAACTGGTTGAAGATTGTAAGACGCATGGACTGTCTTCTGTTTGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098674.6 |
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| CDS CAA 72 bp | AGACAGTCCATGCGTCTTACAATCTTCAACCAGTTCTaGCTGCCAATGAGTGAAAACCCTTCCAGCAGTGTC | + |
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Preference number: 6 (lower is better) Translates to: RQSMRLTIFNQF*LPMSENPSSSV Trigger: GACACTGCTGGAAGGGTTTTCACTCATTGGCAGCAAGAACTGGTTGAAGATTGTAAGACGCATGGACTGTCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098674.6 |
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| CDS CAA 90 bp | TCTTCCTTGGACTCCCCACTAAACTGGACACGAAACATTCGGCTCTaGTTCTTTATTGTTGTTCCAAACAGAAGACAGTCCATGCGTCTT | + |
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Preference number: 6 (lower is better) Translates to: SSLDSPLNWTRNIRL*FFIVVPNRRQSMRL Trigger: AAGACGCATGGACTGTCTTCTGTTTGGAACAACAATAAAGAACAAGAGCCGAATGTTTCGTGTCCAGTTTAGTGGGGAGTCCAAGGAAGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098674.6 |
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| CDS TCA 72 bp | CCACCTCTTCCACAAATGCTGGGAAGTTTTGATCCATaGGACATAAGCGTAGAAAAGGTCCCAATTCTTCTG | + |
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Preference number: 6 (lower is better) Translates to: PPLPQMLGSFDP*DISVEKVPILL Trigger: CAGAAGAATTGGGACCTTTTCTACGCTTATGTCTCATGGATCAAAACTTCCCAGCATTTGTGGAAGAGGTGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000098674.6 ENSMUST00000186592.2 |
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| CDS CAA 72 bp | GACTCCCCACTAAACTGGACACGAAACATTCGGCTCTaGTTCTTTATTGTTGTTCCAAACAGAAGACAGTCC | + |
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Preference number: 6 (lower is better) Translates to: DSPLNWTRNIRL*FFIVVPNRRQS Trigger: GGACTGTCTTCTGTTTGGAACAACAATAAAGAACAAGAGCCGAATGTTTCGTGTCCAGTTTAGTGGGGAGTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098674.6 |
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| CDS CAA 72 bp | ACTGGACACGAAACATTCGGCTCTTGTTCTTTATTGTaGTTCCAAACAGAAGACAGTCCATGCGTCTTACAA | + |
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Preference number: 6 (lower is better) Translates to: TGHETFGSCSLL*FQTEDSPCVLQ Trigger: TTGTAAGACGCATGGACTGTCTTCTGTTTGGAACAACAATAAAGAACAAGAGCCGAATGTTTCGTGTCCAGT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098674.6 |
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| CDS GCA 72 bp | TGTTCTTTATTGTTGTTCCAAACAGAAGACAGTCCATaGGTCTTACAATCTTCAACCAGTTCTTGCTGCCAA | + |
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Preference number: 6 (lower is better) Translates to: CSLLLFQTEDSP*VLQSSTSSCCQ Trigger: TTGGCAGCAAGAACTGGTTGAAGATTGTAAGACGCATGGACTGTCTTCTGTTTGGAACAACAATAAAGAACA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098674.6 |
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