Pregenerated sensors for RDX (Mus musculus)
Ensembl gene IDs: ENSMUSG00000032050Ensembl transcript IDs: ENSMUST00000000590.16, ENSMUST00000061352.11, ENSMUST00000163153.9, ENSMUST00000238858.2
Found 77 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | ATCGCTGTGATGTGTTGGAAAAGTGAGCACTTATACGTCCAGGTCTaGGTGGTAAGGCCTACCGTCTCCCTCTCATACAGAAAGCATTCC | + |
|
Preference number: 1 (lower is better) Translates to: IAVMCWKSEHLYVQV*VVRPTVSLSYRKHS Trigger: GGAATGCTTTCTGTATGAGAGGGAGACGGTAGGCCTTACCACTCAGACCTGGACGTATAAGTGCTCACTTTTCCAACACATCACAGCGAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000000590.16 ENSMUST00000163153.9 |
||
| 3UTR TCA 90 bp | AAGTCCTTTAGCAATAAGGACTATCGCTGTGATGTGTTGGAAAAGTaGGCACTTATACGTCCAGGTCTGAGTGGTAAGGCCTACCGTCTC | + |
|
Preference number: 1 (lower is better) Translates to: KSFSNKDYRCDVLEK*ALIRPGLSGKAYRL Trigger: GAGACGGTAGGCCTTACCACTCAGACCTGGACGTATAAGTGCTCACTTTTCCAACACATCACAGCGATAGTCCTTATTGCTAAAGGACTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000000590.16 ENSMUST00000163153.9 |
||
| 3UTR-3UTR TCA 90 bp | CCAAGTCCTTTAGCAATAAGGACTATCGCTGTGATGTGTTGGAAAAGTGAGCACGAGACTGCGTATGGGTaGCAGACATGCAGCACAGAC | + |
|
Preference number: 2 (lower is better) Translates to: PSPLAIRTIAVMCWKSEHETAYG*QTCSTD Trigger: GTCTGTGCTGCATGTCTGTCACCCATACGCAGTCTC...GTGCTCACTTTTCCAACACATCACAGCGATAGTCCTTATTGCTAAAGGACTTGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000000590.16 ENSMUST00000163153.9 |
||
| 3UTR-3UTR TCA 90 bp | TGCTTCACGATCAGACAGTGTCAGAACATCTTTCTAGCTGGAAAGACTTCTTCACACAGTCGACTGGTATaGGTGCTTTGGCAAGGTGGG | + |
|
Preference number: 2 (lower is better) Translates to: CFTIRQCQNIFLAGKTSSHSRLV*VLWQGG Trigger: CCCACCTTGCCAAAGCACTCATACCAGTCGACTGTG...TGAAGAAGTCTTTCCAGCTAGAAAGATGTTCTGACACTGTCTGATCGTGAAGCA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000000590.16 ENSMUST00000163153.9 |
||
| 3UTR-3UTR GCA 90 bp | TGCTTCACGATCAGACAGTGTCAGAACATCTTTCTAGCTGGAAAGACTTCTTCAGCGTTCCATTGCATCTaGACTGCACAGGCCTGCTTT | + |
|
Preference number: 2 (lower is better) Translates to: CFTIRQCQNIFLAGKTSSAFHCI*TAQACF Trigger: AAAGCAGGCCTGTGCAGTGCAGATGCAATGGAACGC...TGAAGAAGTCTTTCCAGCTAGAAAGATGTTCTGACACTGTCTGATCGTGAAGCA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000000590.16 ENSMUST00000163153.9 |
||
| 3UTR-3UTR GCA 90 bp | TGCTTCACGATCAGACAGTGTCAGAACATCTTTCTAGCTGGAAAGACTTCTTCAATGCAGCACAGACTGTaGGTACAGTCACCACGTACG | + |
|
Preference number: 2 (lower is better) Translates to: CFTIRQCQNIFLAGKTSSMQHRL*VQSPRT Trigger: CGTACGTGGTGACTGTACGCACAGTCTGTGCTGCAT...TGAAGAAGTCTTTCCAGCTAGAAAGATGTTCTGACACTGTCTGATCGTGAAGCA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000000590.16 ENSMUST00000163153.9 |
||
| 3UTR-3UTR TCA 90 bp | CAGGTGCTTCACGATCAGACAGTGTCAGAACATCTTTCTAGCTGGAAAGACTTCTGGTGGTTCAGCTTATaGAGGACATGGATCACAAGA | + |
|
Preference number: 2 (lower is better) Translates to: QVLHDQTVSEHLSSWKDFWWFSL*RTWITR Trigger: TCTTGTGATCCATGTCCTTCATAAGCTGAACCACCA...GAAGTCTTTCCAGCTAGAAAGATGTTCTGACACTGTCTGATCGTGAAGCACCTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000000590.16 ENSMUST00000163153.9 |
||
| 3UTR-3UTR TCA 90 bp | ATATGCTACAATAACGACCCCTATCCCATCAAGAACAAAGAATGGGATGTTTCACACAGTCGACTGGTATaGGTGCTTTGGCAAGGTGGG | + |
|
Preference number: 2 (lower is better) Translates to: ICYNNDPYPIKNKEWDVSHSRLV*VLWQGG Trigger: CCCACCTTGCCAAAGCACTCATACCAGTCGACTGTG...TGAAACATCCCATTCTTTGTTCTTGATGGGATAGGGGTCGTTATTGTAGCATAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000000590.16 ENSMUST00000163153.9 |
||
| 3UTR-3UTR TCA 90 bp | ATATGCTACAATAACGACCCCTATCCCATCAAGAACAAAGAATGGGATGTTTCAGAGACTGCGTATGGGTaGCAGACATGCAGCACAGAC | + |
|
Preference number: 2 (lower is better) Translates to: ICYNNDPYPIKNKEWDVSETAYG*QTCSTD Trigger: GTCTGTGCTGCATGTCTGTCACCCATACGCAGTCTC...TGAAACATCCCATTCTTTGTTCTTGATGGGATAGGGGTCGTTATTGTAGCATAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000000590.16 ENSMUST00000163153.9 |
||
| 3UTR-3UTR GCA 90 bp | TGCTTCACGATCAGACAGTGTCAGAACATCTTTCTAGCTGGAAAGACTTCTTCACCATTGCATCTGCACTaGACAGGCCTGCTTTTCTCT | + |
|
Preference number: 2 (lower is better) Translates to: CFTIRQCQNIFLAGKTSSPLHLH*TGLLFS Trigger: AGAGAAAAGCAGGCCTGTGCAGTGCAGATGCAATGG...TGAAGAAGTCTTTCCAGCTAGAAAGATGTTCTGACACTGTCTGATCGTGAAGCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000000590.16 ENSMUST00000163153.9 |
||
| 3UTR-3UTR GCA 90 bp | TGCTTCACGATCAGACAGTGTCAGAACATCTTTCTAGCTGGAAAGACTTCTTCATTTGGCAAGGTGGGATaGGTTCCATTGCATCTGCAC | + |
|
Preference number: 2 (lower is better) Translates to: CFTIRQCQNIFLAGKTSSFGKVG*VPLHLH Trigger: GTGCAGATGCAATGGAACGCATCCCACCTTGCCAAA...TGAAGAAGTCTTTCCAGCTAGAAAGATGTTCTGACACTGTCTGATCGTGAAGCA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000000590.16 ENSMUST00000163153.9 |
||
| 3UTR-3UTR TCA 90 bp | CCAAGTCCTTTAGCAATAAGGACTATCGCTGTGATGTGTTGGAAAAGTGAGCACTATCATGACAGGGCATaGGAAGGTCACACTGACAAA | + |
|
Preference number: 2 (lower is better) Translates to: PSPLAIRTIAVMCWKSEHYHDRA*EGHTDK Trigger: TTTGTCAGTGTGACCTTCTCATGCCCTGTCATGATA...GTGCTCACTTTTCCAACACATCACAGCGATAGTCCTTATTGCTAAAGGACTTGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000000590.16 ENSMUST00000163153.9 |
||
| 3UTR-3UTR TCA 90 bp | CAGGTGCTTCACGATCAGACAGTGTCAGAACATCTTTCTAGCTGGAAAGACTTCTCAAGCTATCAGAGATaGCTGCACTTAAGGAAAGCA | + |
|
Preference number: 2 (lower is better) Translates to: QVLHDQTVSEHLSSWKDFSSYQR*LHLRKA Trigger: TGCTTTCCTTAAGTGCAGTCATCTCTGATAGCTTGA...GAAGTCTTTCCAGCTAGAAAGATGTTCTGACACTGTCTGATCGTGAAGCACCTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000000590.16 ENSMUST00000163153.9 |
||
| 3UTR-3UTR GCA 90 bp | ATGAGAATGAACATGGAGATGTATGTAGCCTACAACATGGAAAGGGCAAAGAAATGCACTGCACAGGCCTaGTTTTCTCTGGTGGTGGTT | + |
|
Preference number: 2 (lower is better) Translates to: MRMNMEMYVAYNMERAKKCTAQA*FSLVVV Trigger: AACCACCACCAGAGAAAAGCAGGCCTGTGCAGTGCA...TTTCTTTGCCCTTTCCATGTTGTAGGCTACATACATCTCCATGTTCATTCTCAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000000590.16 ENSMUST00000163153.9 |
||
| 3UTR-3UTR TCA 90 bp | TGCTTCACGATCAGACAGTGTCAGAACATCTTTCTAGCTGGAAAGACTTCTTCATGGTGGTTCAGCTTATaGAGGACATGGATCACAAGA | + |
|
Preference number: 2 (lower is better) Translates to: CFTIRQCQNIFLAGKTSSWWFSL*RTWITR Trigger: TCTTGTGATCCATGTCCTTCATAAGCTGAACCACCA...TGAAGAAGTCTTTCCAGCTAGAAAGATGTTCTGACACTGTCTGATCGTGAAGCA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000000590.16 ENSMUST00000163153.9 |
||
| 3UTR-3UTR GCA 90 bp | ATGAGAATGAACATGGAGATGTATGTAGCCTACAACATGGAAAGGGCAAAGAAATTTGGCAAGGTGGGATaGGTTCCATTGCATCTGCAC | + |
|
Preference number: 2 (lower is better) Translates to: MRMNMEMYVAYNMERAKKFGKVG*VPLHLH Trigger: GTGCAGATGCAATGGAACGCATCCCACCTTGCCAAA...TTTCTTTGCCCTTTCCATGTTGTAGGCTACATACATCTCCATGTTCATTCTCAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000000590.16 ENSMUST00000163153.9 |
||
| 3UTR-3UTR GCA 90 bp | CAGGTGCTTCACGATCAGACAGTGTCAGAACATCTTTCTAGCTGGAAAGACTTCAACATGACATCACACTaGCTTAATGATGAAGGACAC | + |
|
Preference number: 2 (lower is better) Translates to: QVLHDQTVSEHLSSWKDFNMTSH*LNDEGH Trigger: GTGTCCTTCATCATTAAGGCAGTGTGATGTCATGTT...GAAGTCTTTCCAGCTAGAAAGATGTTCTGACACTGTCTGATCGTGAAGCACCTG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000000590.16 ENSMUST00000163153.9 |
||
| 3UTR-3UTR TCA 90 bp | TGCTTCACGATCAGACAGTGTCAGAACATCTTTCTAGCTGGAAAGACTTCTTCATCAAGCTATCAGAGATaGCTGCACTTAAGGAAAGCA | + |
|
Preference number: 2 (lower is better) Translates to: CFTIRQCQNIFLAGKTSSSSYQR*LHLRKA Trigger: TGCTTTCCTTAAGTGCAGTCATCTCTGATAGCTTGA...TGAAGAAGTCTTTCCAGCTAGAAAGATGTTCTGACACTGTCTGATCGTGAAGCA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000000590.16 ENSMUST00000163153.9 |
||
| 3UTR-3UTR TCA 90 bp | TGCTTCACGATCAGACAGTGTCAGAACATCTTTCTAGCTGGAAAGACTTCTTCATTTTGTTCTCAGAGTTaGTGTTTCCATATGCTGCCC | + |
|
Preference number: 2 (lower is better) Translates to: CFTIRQCQNIFLAGKTSSFCSQS*CFHMLP Trigger: GGGCAGCATATGGAAACATCAACTCTGAGAACAAAA...TGAAGAAGTCTTTCCAGCTAGAAAGATGTTCTGACACTGTCTGATCGTGAAGCA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000000590.16 ENSMUST00000163153.9 |
||
| 3UTR-3UTR GCA 90 bp | GTTATAATTGATGCAATCACTATGAAAACCCATTTTGCAAATGGCTGTTCCTGTTGCACTGCACAGGCCTaGTTTTCTCTGGTGGTGGTT | + |
|
Preference number: 2 (lower is better) Translates to: VIIDAITMKTHFANGCSCCTAQA*FSLVVV Trigger: AACCACCACCAGAGAAAAGCAGGCCTGTGCAGTGCA...ACAGGAACAGCCATTTGCAAAATGGGTTTTCATAGTGATTGCATCAATTATAAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000000590.16 ENSMUST00000163153.9 |
||
| 3UTR-3UTR GCA 90 bp | CCAAGTCCTTTAGCAATAAGGACTATCGCTGTGATGTGTTGGAAAAGTGAGCACCTAAGATGTACACAGTaGTCAAAGCACATACACACA | + |
|
Preference number: 2 (lower is better) Translates to: PSPLAIRTIAVMCWKSEHLRCTQ*SKHIHT Trigger: TGTGTGTATGTGCTTTGAGCACTGTGTACATCTTAG...GTGCTCACTTTTCCAACACATCACAGCGATAGTCCTTATTGCTAAAGGACTTGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000000590.16 ENSMUST00000163153.9 |
||
| 3UTR-3UTR GCA 90 bp | CCAAGTCCTTTAGCAATAAGGACTATCGCTGTGATGTGTTGGAAAAGTGAGCACGAAAACGAGGCTTTCTaGATCTTCTGTAAATTCAGG | + |
|
Preference number: 2 (lower is better) Translates to: PSPLAIRTIAVMCWKSEHENEAF*IFCKFR Trigger: CCTGAATTTACAGAAGATGCAGAAAGCCTCGTTTTC...GTGCTCACTTTTCCAACACATCACAGCGATAGTCCTTATTGCTAAAGGACTTGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000000590.16 ENSMUST00000163153.9 |
||
| 3UTR-3UTR TCA 90 bp | CCAAGTCCTTTAGCAATAAGGACTATCGCTGTGATGTGTTGGAAAAGTGAGCACTGGACAAAAGAAAAATaGCCAAACATGACATCACAC | + |
|
Preference number: 2 (lower is better) Translates to: PSPLAIRTIAVMCWKSEHWTKEK*PNMTSH Trigger: GTGTGATGTCATGTTTGGTCATTTTTCTTTTGTCCA...GTGCTCACTTTTCCAACACATCACAGCGATAGTCCTTATTGCTAAAGGACTTGG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000000590.16 ENSMUST00000163153.9 |
||
| 3UTR-3UTR GCA 90 bp | GTTATAATTGATGCAATCACTATGAAAACCCATTTTGCAAATGGCTGTTCCTGTCCATTGCATCTGCACTaGACAGGCCTGCTTTTCTCT | + |
|
Preference number: 2 (lower is better) Translates to: VIIDAITMKTHFANGCSCPLHLH*TGLLFS Trigger: AGAGAAAAGCAGGCCTGTGCAGTGCAGATGCAATGG...ACAGGAACAGCCATTTGCAAAATGGGTTTTCATAGTGATTGCATCAATTATAAC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000000590.16 ENSMUST00000163153.9 |
||
| 3UTR-3UTR GCA 90 bp | TGCTTCACGATCAGACAGTGTCAGAACATCTTTCTAGCTGGAAAGACTTCTTCACTAAGATGTACACAGTaGTCAAAGCACATACACACA | + |
|
Preference number: 2 (lower is better) Translates to: CFTIRQCQNIFLAGKTSSLRCTQ*SKHIHT Trigger: TGTGTGTATGTGCTTTGAGCACTGTGTACATCTTAG...TGAAGAAGTCTTTCCAGCTAGAAAGATGTTCTGACACTGTCTGATCGTGAAGCA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000000590.16 ENSMUST00000163153.9 |
||
| 3UTR-3UTR CCA 90 bp | CAGGTGCTTCACGATCAGACAGTGTCAGAACATCTTTCTAGCTGGAAAGACTTCAAATGTACAAAAGGGTaGGTGACAGAATGTCATTAT | + |
|
Preference number: 2 (lower is better) Translates to: QVLHDQTVSEHLSSWKDFKCTKG*VTECHY Trigger: ATAATGACATTCTGTCACCCACCCTTTTGTACATTT...GAAGTCTTTCCAGCTAGAAAGATGTTCTGACACTGTCTGATCGTGAAGCACCTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000000590.16 ENSMUST00000163153.9 |
||
| 3UTR-3UTR TCA 90 bp | TGCTTCACGATCAGACAGTGTCAGAACATCTTTCTAGCTGGAAAGACTTCTTCATGGACAAAAGAAAAATaGCCAAACATGACATCACAC | + |
|
Preference number: 2 (lower is better) Translates to: CFTIRQCQNIFLAGKTSSWTKEK*PNMTSH Trigger: GTGTGATGTCATGTTTGGTCATTTTTCTTTTGTCCA...TGAAGAAGTCTTTCCAGCTAGAAAGATGTTCTGACACTGTCTGATCGTGAAGCA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000000590.16 ENSMUST00000163153.9 |
||
| 3UTR-3UTR CCA 90 bp | CCAAGTCCTTTAGCAATAAGGACTATCGCTGTGATGTGTTGGAAAAGTGAGCACCACATTTGTCAGACGTaGCCATTAGTATTAATATTC | + |
|
Preference number: 2 (lower is better) Translates to: PSPLAIRTIAVMCWKSEHHICQT*PLVLIF Trigger: GAATATTAATACTAATGGCCACGTCTGACAAATGTG...GTGCTCACTTTTCCAACACATCACAGCGATAGTCCTTATTGCTAAAGGACTTGG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000000590.16 ENSMUST00000163153.9 |
||
| 3UTR-3UTR CCA 90 bp | TGCTTCACGATCAGACAGTGTCAGAACATCTTTCTAGCTGGAAAGACTTCTTCAAAATGTACAAAAGGGTaGGTGACAGAATGTCATTAT | + |
|
Preference number: 2 (lower is better) Translates to: CFTIRQCQNIFLAGKTSSKCTKG*VTECHY Trigger: ATAATGACATTCTGTCACCCACCCTTTTGTACATTT...TGAAGAAGTCTTTCCAGCTAGAAAGATGTTCTGACACTGTCTGATCGTGAAGCA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000000590.16 ENSMUST00000163153.9 |
||
| 3UTR-3UTR CCA 90 bp | TGCTTCACGATCAGACAGTGTCAGAACATCTTTCTAGCTGGAAAGACTTCTTCACACATTTGTCAGACGTaGCCATTAGTATTAATATTC | + |
|
Preference number: 2 (lower is better) Translates to: CFTIRQCQNIFLAGKTSSHICQT*PLVLIF Trigger: GAATATTAATACTAATGGCCACGTCTGACAAATGTG...TGAAGAAGTCTTTCCAGCTAGAAAGATGTTCTGACACTGTCTGATCGTGAAGCA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000000590.16 ENSMUST00000163153.9 |
||
| 3UTR-3UTR CCA 90 bp | TGCTTCACGATCAGACAGTGTCAGAACATCTTTCTAGCTGGAAAGACTTCTTCAATCAAGAACAAAGAATaGGATGTTTCATGTACTGCA | + |
|
Preference number: 2 (lower is better) Translates to: CFTIRQCQNIFLAGKTSSIKNKE*DVSCTA Trigger: TGCAGTACATGAAACATCCCATTCTTTGTTCTTGAT...TGAAGAAGTCTTTCCAGCTAGAAAGATGTTCTGACACTGTCTGATCGTGAAGCA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000000590.16 ENSMUST00000163153.9 |
||
| 3UTR-3UTR TCA 90 bp | ATATGCTACAATAACGACCCCTATCCCATCAAGAACAAAGAATGGGATGTTTCAAAAAATGACCAAACATaGCATCACACTGCCTTAATG | + |
|
Preference number: 2 (lower is better) Translates to: ICYNNDPYPIKNKEWDVSKNDQT*HHTALM Trigger: CATTAAGGCAGTGTGATGTCATGTTTGGTCATTTTT...TGAAACATCCCATTCTTTGTTCTTGATGGGATAGGGGTCGTTATTGTAGCATAT 38% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000000590.16 ENSMUST00000163153.9 |
||
| 3UTR-3UTR GCA 90 bp | GTTATAATTGATGCAATCACTATGAAAACCCATTTTGCAAATGGCTGTTCCTGTAACATGACATCACACTaGCTTAATGATGAAGGACAC | + |
|
Preference number: 2 (lower is better) Translates to: VIIDAITMKTHFANGCSCNMTSH*LNDEGH Trigger: GTGTCCTTCATCATTAAGGCAGTGTGATGTCATGTT...ACAGGAACAGCCATTTGCAAAATGGGTTTTCATAGTGATTGCATCAATTATAAC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000000590.16 ENSMUST00000163153.9 |
||
| 3UTR TCA 72 bp | CACTCAGTGAAGGCCATGATTGAGACTGCGTATGGGTaGCAGACATGCAGCACAGACTGTGCGTACAGTCAC | + |
|
Preference number: 3 (lower is better) Translates to: HSVKAMIETAYG*QTCSTDCAYSH Trigger: GTGACTGTACGCACAGTCTGTGCTGCATGTCTGTCACCCATACGCAGTCTCAATCATGGCCTTCACTGAGTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000000590.16 ENSMUST00000163153.9 |
||
| 3UTR TCA 72 bp | ATGTGTTGGAAAAGTGAGCACTTATACGTCCAGGTCTaGGTGGTAAGGCCTACCGTCTCCCTCTCATACAGA | + |
|
Preference number: 3 (lower is better) Translates to: MCWKSEHLYVQV*VVRPTVSLSYR Trigger: TCTGTATGAGAGGGAGACGGTAGGCCTTACCACTCAGACCTGGACGTATAAGTGCTCACTTTTCCAACACAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000000590.16 ENSMUST00000163153.9 |
||
| 3UTR TCA 72 bp | AGCAATAAGGACTATCGCTGTGATGTGTTGGAAAAGTaGGCACTTATACGTCCAGGTCTGAGTGGTAAGGCC | + |
|
Preference number: 3 (lower is better) Translates to: SNKDYRCDVLEK*ALIRPGLSGKA Trigger: GGCCTTACCACTCAGACCTGGACGTATAAGTGCTCACTTTTCCAACACATCACAGCGATAGTCCTTATTGCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000000590.16 ENSMUST00000163153.9 |
||
| 3UTR-3UTR CAA 90 bp | CAGGTGCTTCACGATCAGACAGTGTCAGAACATCTTTCTAGCTGGAAAGACTTCAGCACATACACACATTaGTCAGACGTGGCCATTAGT | + |
|
Preference number: 3 (lower is better) Translates to: QVLHDQTVSEHLSSWKDFSTYTH*SDVAIS Trigger: ACTAATGGCCACGTCTGACAAATGTGTGTATGTGCT...GAAGTCTTTCCAGCTAGAAAGATGTTCTGACACTGTCTGATCGTGAAGCACCTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000000590.16 ENSMUST00000163153.9 |
||
| 3UTR TCA 72 bp | ACAGACTGTGCGTACAGTCACCACGTACGTAAAGAGTaGGGTAGTATTTTGTTCTCAGAGTTGATGTTTCCA | + |
|
Preference number: 3 (lower is better) Translates to: TDCAYSHHVRKE*GSILFSELMFP Trigger: TGGAAACATCAACTCTGAGAACAAAATACTACCTCACTCTTTACGTACGTGGTGACTGTACGCACAGTCTGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000000590.16 ENSMUST00000163153.9 |
||
| 3UTR CCA 72 bp | TACAATAACGACCCCTATCCCATCAAGAACAAAGAATaGGATGTTTCATGTACTGCAAAGGCAACGTCTTTC | + |
|
Preference number: 3 (lower is better) Translates to: YNNDPYPIKNKE*DVSCTAKATSF Trigger: GAAAGACGTTGCCTTTGCAGTACATGAAACATCCCATTCTTTGTTCTTGATGGGATAGGGGTCGTTATTGTA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000000590.16 ENSMUST00000163153.9 |
||
| 3UTR-3UTR CAA 90 bp | ATGAGAATGAACATGGAGATGTATGTAGCCTACAACATGGAAAGGGCAAAGAAAAGCACATACACACATTaGTCAGACGTGGCCATTAGT | + |
|
Preference number: 3 (lower is better) Translates to: MRMNMEMYVAYNMERAKKSTYTH*SDVAIS Trigger: ACTAATGGCCACGTCTGACAAATGTGTGTATGTGCT...TTTCTTTGCCCTTTCCATGTTGTAGGCTACATACATCTCCATGTTCATTCTCAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000000590.16 ENSMUST00000163153.9 |
||
| 3UTR-3UTR CAA 90 bp | GTTATAATTGATGCAATCACTATGAAAACCCATTTTGCAAATGGCTGTTCCTGTATTTTGTTCTCAGAGTaGATGTTTCCATATGCTGCC | + |
|
Preference number: 3 (lower is better) Translates to: VIIDAITMKTHFANGCSCILFSE*MFPYAA Trigger: GGCAGCATATGGAAACATCAACTCTGAGAACAAAAT...ACAGGAACAGCCATTTGCAAAATGGGTTTTCATAGTGATTGCATCAATTATAAC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000000590.16 ENSMUST00000163153.9 |
||
| CDS-3UTR CCA 90 bp | CAGGTGCTTCACGATCAGACAGTGTCAGAACATCTTTCTAGCTGGAAAGACTTCTCATCACCCCCTCGCTaGACAGCTCGGCGCTGGCCT | + |
|
Preference number: 4 (lower is better) Translates to: QVLHDQTVSEHLSSWKDFSSPPR*TARRWP Trigger: AGGCCAGCGCCGAGCTGTCCAGCGAGGGGGTGATGA...GAAGTCTTTCCAGCTAGAAAGATGTTCTGACACTGTCTGATCGTGAAGCACCTG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000000590.16 ENSMUST00000163153.9 |
||
| CDS-3UTR TCA 90 bp | TGCTTCACGATCAGACAGTGTCAGAACATCTTTCTAGCTGGAAAGACTTCTTCATCTCCGTGGGAGGGATaGCTGGAGGAGGGGGAGGTG | + |
|
Preference number: 4 (lower is better) Translates to: CFTIRQCQNIFLAGKTSSSPWEG*LEEGEV Trigger: CACCTCCCCCTCCTCCAGTCATCCCTCCCACGGAGA...TGAAGAAGTCTTTCCAGCTAGAAAGATGTTCTGACACTGTCTGATCGTGAAGCA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000000590.16 ENSMUST00000163153.9 |
||
| CDS-3UTR CCA 90 bp | TGCTTCACGATCAGACAGTGTCAGAACATCTTTCTAGCTGGAAAGACTTCTTCATCATCACCCCCTCGCTaGACAGCTCGGCGCTGGCCT | + |
|
Preference number: 4 (lower is better) Translates to: CFTIRQCQNIFLAGKTSSSSPPR*TARRWP Trigger: AGGCCAGCGCCGAGCTGTCCAGCGAGGGGGTGATGA...TGAAGAAGTCTTTCCAGCTAGAAAGATGTTCTGACACTGTCTGATCGTGAAGCA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000000590.16 ENSMUST00000163153.9 |
||
| CDS-3UTR GCA 90 bp | TGCTTCACGATCAGACAGTGTCAGAACATCTTTCTAGCTGGAAAGACTTCTTCACTCTGCCTCCTCTTTTaGTCGCTGGCGCTCCTGCTC | + |
|
Preference number: 4 (lower is better) Translates to: CFTIRQCQNIFLAGKTSSLCLLF*SLALLL Trigger: GAGCAGGAGCGCCAGCGAGCAAAAGAGGAGGCAGAG...TGAAGAAGTCTTTCCAGCTAGAAAGATGTTCTGACACTGTCTGATCGTGAAGCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000000590.16 ENSMUST00000163153.9 |
||
| CDS-3UTR CCA 90 bp | CAGGTGCTTCACGATCAGACAGTGTCAGAACATCTTTCTAGCTGGAAAGACTTCAGGGGGAGGTGGAGGTaGCGCAGACATCACAGTTTT | + |
|
Preference number: 4 (lower is better) Translates to: QVLHDQTVSEHLSSWKDFRGRWR*RRHHSF Trigger: AAAACTGTGATGTCTGCGCCACCTCCACCTCCCCCT...GAAGTCTTTCCAGCTAGAAAGATGTTCTGACACTGTCTGATCGTGAAGCACCTG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000000590.16 ENSMUST00000163153.9 |
||
| CDS-3UTR CCA 90 bp | ATATGCTACAATAACGACCCCTATCCCATCAAGAACAAAGAATGGGATGTTTCATGGACAGCTCGGCGCTaGCCTCCGCACTGTTCTCGT | + |
|
Preference number: 4 (lower is better) Translates to: ICYNNDPYPIKNKEWDVSWTARR*PPHCSR Trigger: ACGAGAACAGTGCGGAGGCCAGCGCCGAGCTGTCCA...TGAAACATCCCATTCTTTGTTCTTGATGGGATAGGGGTCGTTATTGTAGCATAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000000590.16 ENSMUST00000163153.9 |
||
| CDS-3UTR GCA 90 bp | GTTATAATTGATGCAATCACTATGAAAACCCATTTTGCAAATGGCTGTTCCTGTCTCTGCCTCCTCTTTTaGTCGCTGGCGCTCCTGCTC | + |
|
Preference number: 4 (lower is better) Translates to: VIIDAITMKTHFANGCSCLCLLF*SLALLL Trigger: GAGCAGGAGCGCCAGCGAGCAAAAGAGGAGGCAGAG...ACAGGAACAGCCATTTGCAAAATGGGTTTTCATAGTGATTGCATCAATTATAAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000000590.16 ENSMUST00000163153.9 |
||
| CDS-3UTR CCA 90 bp | ATATGCTACAATAACGACCCCTATCCCATCAAGAACAAAGAATGGGATGTTTCAAGGGGGAGGTGGAGGTaGCGCAGACATCACAGTTTT | + |
|
Preference number: 4 (lower is better) Translates to: ICYNNDPYPIKNKEWDVSRGRWR*RRHHSF Trigger: AAAACTGTGATGTCTGCGCCACCTCCACCTCCCCCT...TGAAACATCCCATTCTTTGTTCTTGATGGGATAGGGGTCGTTATTGTAGCATAT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000000590.16 ENSMUST00000163153.9 |
||
| CDS-3UTR TCA 90 bp | CAGGTGCTTCACGATCAGACAGTGTCAGAACATCTTTCTAGCTGGAAAGACTTCCCAAAATTCGTTTATTaGTTCTCAGACGAGGTGCAT | + |
|
Preference number: 4 (lower is better) Translates to: QVLHDQTVSEHLSSWKDFPKFVY*FSDEVH Trigger: ATGCACCTCGTCTGAGAATCAATAAACGAATTTTGG...GAAGTCTTTCCAGCTAGAAAGATGTTCTGACACTGTCTGATCGTGAAGCACCTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000000590.16 ENSMUST00000163153.9 |
||
| CDS-3UTR GCA 90 bp | ATATGCTACAATAACGACCCCTATCCCATCAAGAACAAAGAATGGGATGTTTCAAGCTTGCTTGGCGATTaGAGACTTGGCTTCTTCTGC | + |
|
Preference number: 4 (lower is better) Translates to: ICYNNDPYPIKNKEWDVSSLLGD*RLGFFC Trigger: GCAGAAGAAGCCAAGTCTGCAATCGCCAAGCAAGCT...TGAAACATCCCATTCTTTGTTCTTGATGGGATAGGGGTCGTTATTGTAGCATAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000000590.16 ENSMUST00000163153.9 |
||
| CDS-3UTR GCA 90 bp | ATATGCTACAATAACGACCCCTATCCCATCAAGAACAAAGAATGGGATGTTTCATGCGCTGCTTCGTATTaGCTTGTCGAATCTGCCGAA | + |
|
Preference number: 4 (lower is better) Translates to: ICYNNDPYPIKNKEWDVSCAASY*LVESAE Trigger: TTCGGCAGATTCGACAAGGCAATACGAAGCAGCGCA...TGAAACATCCCATTCTTTGTTCTTGATGGGATAGGGGTCGTTATTGTAGCATAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000000590.16 ENSMUST00000163153.9 |
||
| CDS-3UTR CCA 90 bp | CAGGTGCTTCACGATCAGACAGTGTCAGAACATCTTTCTAGCTGGAAAGACTTCTCTTCTAGTTCTTTCTaGGCTTTCACTGTTTGCTCT | + |
|
Preference number: 4 (lower is better) Translates to: QVLHDQTVSEHLSSWKDFSSSSF*AFTVCS Trigger: AGAGCAAACAGTGAAAGCCCAGAAAGAACTAGAAGA...GAAGTCTTTCCAGCTAGAAAGATGTTCTGACACTGTCTGATCGTGAAGCACCTG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000000590.16 ENSMUST00000163153.9 |
||
| CDS-3UTR TCA 90 bp | TGCTTCACGATCAGACAGTGTCAGAACATCTTTCTAGCTGGAAAGACTTCTTCACCAAAATTCGTTTATTaGTTCTCAGACGAGGTGCAT | + |
|
Preference number: 4 (lower is better) Translates to: CFTIRQCQNIFLAGKTSSPKFVY*FSDEVH Trigger: ATGCACCTCGTCTGAGAATCAATAAACGAATTTTGG...TGAAGAAGTCTTTCCAGCTAGAAAGATGTTCTGACACTGTCTGATCGTGAAGCA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000000590.16 ENSMUST00000163153.9 |
||
| CDS-3UTR GCA 90 bp | GTTATAATTGATGCAATCACTATGAAAACCCATTTTGCAAATGGCTGTTCCTGTAGCTTGCTTGGCGATTaGAGACTTGGCTTCTTCTGC | + |
|
Preference number: 4 (lower is better) Translates to: VIIDAITMKTHFANGCSCSLLGD*RLGFFC Trigger: GCAGAAGAAGCCAAGTCTGCAATCGCCAAGCAAGCT...ACAGGAACAGCCATTTGCAAAATGGGTTTTCATAGTGATTGCATCAATTATAAC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000000590.16 ENSMUST00000163153.9 |
||
| CDS-3UTR CCA 90 bp | TTAGGCCAGCCTGGGAAAGCTTTATTAGAAAACCAACAATTACACTGGATGTGCATTATACATCCTTTCTaGGCTTTCACTGTTTGCTCT | + |
|
Preference number: 4 (lower is better) Translates to: LGQPGKALLENQQLHWMCIIHPF*AFTVCS Trigger: AGAGCAAACAGTGAAAGCCCAGAAAGGATGTATAAT...GCACATCCAGTGTAATTGTTGGTTTTCTAATAAAGCTTTCCCAGGCTGGCCTAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061352.11 |
||
| CDS-3UTR GCA 90 bp | CAGCCTGGGAAAGCTTTATTAGAAAACCAACAATTACACTGGATGTGCTTTGCCCCTTATACTCTTCAGTaGTTCTTTCAGAGTTTTGTA | + |
|
Preference number: 4 (lower is better) Translates to: QPGKALLENQQLHWMCFAPYTLQ*FFQSFV Trigger: TACAAAACTCTGAAAGAAGCACTGAAGAGTATAAGG...GGCAAAGCACATCCAGTGTAATTGTTGGTTTTCTAATAAAGCTTTCCCAGGCTG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000061352.11 |
||
| CDS-3UTR TCA 90 bp | AGCTTTATTAGAAAACCAACAATTACACTGGATGTGCTTTGCCTTAAGATGACTCCAAAATTCGTTTATTaGTTCTCAGACGAGGTGCAT | + |
|
Preference number: 4 (lower is better) Translates to: SFIRKPTITLDVLCLKMTPKFVY*FSDEVH Trigger: ATGCACCTCGTCTGAGAATCAATAAACGAATTTTGG...AGTCATCTTAAGGCAAAGCACATCCAGTGTAATTGTTGGTTTTCTAATAAAGCT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000061352.11 |
||
| CDS-3UTR CCA 90 bp | GTTATAATTGATGCAATCACTATGAAAACCCATTTTGCAAATGGCTGTTCCTGTTCTTCTAGTTCTTTCTaGGCTTTCACTGTTTGCTCT | + |
|
Preference number: 4 (lower is better) Translates to: VIIDAITMKTHFANGCSCSSSSF*AFTVCS Trigger: AGAGCAAACAGTGAAAGCCCAGAAAGAACTAGAAGA...ACAGGAACAGCCATTTGCAAAATGGGTTTTCATAGTGATTGCATCAATTATAAC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000000590.16 ENSMUST00000163153.9 |
||
| CDS GCA 90 bp | GACAGCTCGGCGCTGGCCTCCGCACTGTTCTCGTCCTGCTCGTCATaGTCGTTCTCCGTGGGAGGGATGACTGGAGGAGGGGGAGGTGGA | + |
|
Preference number: 5 (lower is better) Translates to: DSSALASALFSSCSS*SFSVGGMTGGGGGG Trigger: TCCACCTCCCCCTCCTCCAGTCATCCCTCCCACGGAGAACGAGCATGACGAGCAGGACGAGAACAGTGCGGAGGCCAGCGCCGAGCTGTC 66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000000590.16 ENSMUST00000163153.9 ENSMUST00000238858.2 |
||
| CDS-3UTR CAA 90 bp | CCAAGTCCTTTAGCAATAAGGACTATCGCTGTGATGTGTTGGAAAAGTGAGCACTTGGCGATTGCAGACTaGGCTTCTTCTGCAGCCCGG | + |
|
Preference number: 5 (lower is better) Translates to: PSPLAIRTIAVMCWKSEHLAIAD*ASSAAR Trigger: CCGGGCTGCAGAAGAAGCCAAGTCTGCAATCGCCAA...GTGCTCACTTTTCCAACACATCACAGCGATAGTCCTTATTGCTAAAGGACTTGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000000590.16 ENSMUST00000163153.9 |
||
| CDS GCA 90 bp | TTACATCTGCTTTATGCTGCTTTGGCAAGAACGCATCTGGAACAGTaGATACAGTTTGGGTCCCCACATGGCTTCAAACTCATCGATGCG | + |
|
Preference number: 5 (lower is better) Translates to: LHLLYAALARTHLEQ*IQFGSPHGFKLIDA Trigger: CGCATCGATGAGTTTGAAGCCATGTGGGGACCCAAACTGTATGCACTGTTCCAGATGCGTTCTTGCCAAAGCAGCATAAAGCAGATGTAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000238858.2 |
||
| CDS-3UTR CAA 90 bp | ATGAGAATGAACATGGAGATGTATGTAGCCTACAACATGGAAAGGGCAAAGAAATTGGCGATTGCAGACTaGGCTTCTTCTGCAGCCCGG | + |
|
Preference number: 5 (lower is better) Translates to: MRMNMEMYVAYNMERAKKLAIAD*ASSAAR Trigger: CCGGGCTGCAGAAGAAGCCAAGTCTGCAATCGCCAA...TTTCTTTGCCCTTTCCATGTTGTAGGCTACATACATCTCCATGTTCATTCTCAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000000590.16 ENSMUST00000163153.9 |
||
| CDS-3UTR CAA 90 bp | TGCTTCACGATCAGACAGTGTCAGAACATCTTTCTAGCTGGAAAGACTTCTTCACATCTGGTCAGCAGCTaGCTTGGCGATTGCAGACTT | + |
|
Preference number: 5 (lower is better) Translates to: CFTIRQCQNIFLAGKTSSHLVSS*LGDCRL Trigger: AAGTCTGCAATCGCCAAGCAAGCTGCTGACCAGATG...TGAAGAAGTCTTTCCAGCTAGAAAGATGTTCTGACACTGTCTGATCGTGAAGCA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000000590.16 ENSMUST00000163153.9 |
||
| CDS-3UTR CAA 90 bp | CCAAGTCCTTTAGCAATAAGGACTATCGCTGTGATGTGTTGGAAAAGTGAGCACTTTGGTCAGTTTGTGTaGTTCCAAAACACGCTGTGG | + |
|
Preference number: 5 (lower is better) Translates to: PSPLAIRTIAVMCWKSEHFGQFV*FQNTLW Trigger: CCACAGCGTGTTTTGGAACAACACAAACTGACCAAA...GTGCTCACTTTTCCAACACATCACAGCGATAGTCCTTATTGCTAAAGGACTTGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000000590.16 ENSMUST00000163153.9 |
||
| CDS-3UTR CAA 90 bp | ATATGCTACAATAACGACCCCTATCCCATCAAGAACAAAGAATGGGATGTTTCACATCTGGTCAGCAGCTaGCTTGGCGATTGCAGACTT | + |
|
Preference number: 5 (lower is better) Translates to: ICYNNDPYPIKNKEWDVSHLVSS*LGDCRL Trigger: AAGTCTGCAATCGCCAAGCAAGCTGCTGACCAGATG...TGAAACATCCCATTCTTTGTTCTTGATGGGATAGGGGTCGTTATTGTAGCATAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000000590.16 ENSMUST00000163153.9 |
||
| CDS-3UTR CAA 90 bp | GGCCAGCCTGGGAAAGCTTTATTAGAAAACCAACAATTACACTGGATGTGCTTTTTTGGTCAGTTTGTGTaGTTCCAAAACACGCTGTGG | + |
|
Preference number: 5 (lower is better) Translates to: GQPGKALLENQQLHWMCFFGQFV*FQNTLW Trigger: CCACAGCGTGTTTTGGAACAACACAAACTGACCAAA...AAAGCACATCCAGTGTAATTGTTGGTTTTCTAATAAAGCTTTCCCAGGCTGGCC 43% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000061352.11 |
||
| CDS-3UTR CAA 90 bp | TGCTTCACGATCAGACAGTGTCAGAACATCTTTCTAGCTGGAAAGACTTCTTCAGCCAAAATTCGTTTATaGATTCTCAGACGAGGTGCA | + |
|
Preference number: 5 (lower is better) Translates to: CFTIRQCQNIFLAGKTSSAKIRL*ILRRGA Trigger: TGCACCTCGTCTGAGAATCAATAAACGAATTTTGGC...TGAAGAAGTCTTTCCAGCTAGAAAGATGTTCTGACACTGTCTGATCGTGAAGCA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000000590.16 ENSMUST00000163153.9 |
||
| CDS-3UTR CAA 90 bp | TTAGGCCAGCCTGGGAAAGCTTTATTAGAAAACCAACAATTACACTGGATGTGCGCCAAAATTCGTTTATaGATTCTCAGACGAGGTGCA | + |
|
Preference number: 5 (lower is better) Translates to: LGQPGKALLENQQLHWMCAKIRL*ILRRGA Trigger: TGCACCTCGTCTGAGAATCAATAAACGAATTTTGGC...GCACATCCAGTGTAATTGTTGGTTTTCTAATAAAGCTTTCCCAGGCTGGCCTAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000061352.11 |
||
| CDS-3UTR CAA 90 bp | CAGGTGCTTCACGATCAGACAGTGTCAGAACATCTTTCTAGCTGGAAAGACTTCTCTTCCTTTTTCTTCTaGGCTTCTTCTAAAAGTGCA | + |
|
Preference number: 5 (lower is better) Translates to: QVLHDQTVSEHLSSWKDFSSFFF*ASSKSA Trigger: TGCACTTTTAGAAGAAGCCAAGAAGAAAAAGGAAGA...GAAGTCTTTCCAGCTAGAAAGATGTTCTGACACTGTCTGATCGTGAAGCACCTG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000000590.16 ENSMUST00000163153.9 |
||
| CDS-3UTR CAA 90 bp | GTTATAATTGATGCAATCACTATGAAAACCCATTTTGCAAATGGCTGTTCCTGTTTTGGTCAGTTTGTGTaGTTCCAAAACACGCTGTGG | + |
|
Preference number: 5 (lower is better) Translates to: VIIDAITMKTHFANGCSCFGQFV*FQNTLW Trigger: CCACAGCGTGTTTTGGAACAACACAAACTGACCAAA...ACAGGAACAGCCATTTGCAAAATGGGTTTTCATAGTGATTGCATCAATTATAAC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 2 transcripts: ENSMUST00000000590.16 ENSMUST00000163153.9 |
||
| CDS-3UTR CAA 90 bp | ATGAGAATGAACATGGAGATGTATGTAGCCTACAACATGGAAAGGGCAAAGAAATCTTCCTTTTTCTTCTaGGCTTCTTCTAAAAGTGCA | + |
|
Preference number: 5 (lower is better) Translates to: MRMNMEMYVAYNMERAKKSSFFF*ASSKSA Trigger: TGCACTTTTAGAAGAAGCCAAGAAGAAAAAGGAAGA...TTTCTTTGCCCTTTCCATGTTGTAGGCTACATACATCTCCATGTTCATTCTCAT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000000590.16 ENSMUST00000163153.9 |
||
| CDS CCA 72 bp | GCTCCTCCTCGCTTCGGTGGTTCATCACCCCCTCGCTaGACAGCTCGGCGCTGGCCTCCGCACTGTTCTCGT | + |
|
Preference number: 6 (lower is better) Translates to: APPRFGGSSPPR*TARRWPPHCSR Trigger: ACGAGAACAGTGCGGAGGCCAGCGCCGAGCTGTCCAGCGAGGGGGTGATGAACCACCGAAGCGAGGAGGAGC 67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000000590.16 ENSMUST00000163153.9 ENSMUST00000238858.2 |
||
| CDS CCA 72 bp | GGTGGTTCATCACCCCCTCGCTGGACAGCTCGGCGCTaGCCTCCGCACTGTTCTCGTCCTGCTCGTCATGCT | + |
|
Preference number: 6 (lower is better) Translates to: GGSSPPRWTARR*PPHCSRPARHA Trigger: AGCATGACGAGCAGGACGAGAACAGTGCGGAGGCCAGCGCCGAGCTGTCCAGCGAGGGGGTGATGAACCACC 65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000000590.16 ENSMUST00000163153.9 ENSMUST00000238858.2 |
||
| CDS CCA 72 bp | TTCTGGGTTTCGGTGACCCGCTCCTCCTCGCTTCGGTaGTTCATCACCCCCTCGCTGGACAGCTCGGCGCTG | + |
|
Preference number: 6 (lower is better) Translates to: FWVSVTRSSSLR*FITPSLDSSAL Trigger: CAGCGCCGAGCTGTCCAGCGAGGGGGTGATGAACCACCGAAGCGAGGAGGAGCGGGTCACCGAAACCCAGAA 65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000000590.16 ENSMUST00000163153.9 ENSMUST00000238858.2 |
||
| CDS CCA 72 bp | AATGCCTGGAGCTGCTTCTTCACGCGTTCATTCTTCTaGGTTTCGGTGACCCGCTCCTCCTCGCTTCGGTGG | + |
|
Preference number: 6 (lower is better) Translates to: NAWSCFFTRSFF*VSVTRSSSLRW Trigger: CCACCGAAGCGAGGAGGAGCGGGTCACCGAAACCCAGAAGAATGAACGCGTGAAGAAGCAGCTCCAGGCATT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000000590.16 ENSMUST00000163153.9 ENSMUST00000238858.2 |
||
| CDS CAA 72 bp | CTTTGGCAAGAACGCATCTGGAACAGTGCATACAGTTaGGGTCCCCACATGGCTTCAAACTCATCGATGCGC | + |
|
Preference number: 6 (lower is better) Translates to: LWQERIWNSAYS*GPHMASNSSMR Trigger: GCGCATCGATGAGTTTGAAGCCATGTGGGGACCCAAACTGTATGCACTGTTCCAGATGCGTTCTTGCCAAAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000238858.2 |
||