Pregenerated sensors for RDM1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000010362Ensembl transcript IDs: ENSMUST00000010506.10, ENSMUST00000133727.8
Found 44 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | TGGGCCTGTACTCCACCGCGATCCTGCCACTTTCCAGAACCACGATaGTCAGCTTCTGGAAGGCATCTGATACAGCCGCCTGGAAGGCAA | + |
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Preference number: 1 (lower is better) Translates to: WACTPPRSCHFPEPR*SASGRHLIQPPGRQ Trigger: TTGCCTTCCAGGCGGCTGTATCAGATGCCTTCCAGAAGCTGACCATCGTGGTTCTGGAAAGTGGCAGGATCGCGGTGGAGTACAGGCCCA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000133727.8 |
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| 3UTR TCA 90 bp | AAGGCTTCACACTTGGATGCTCAGGGAGGGAGGGCAGCAACCCACTaGTTGGACACGCAGAACTTCCTGTCAAAGTCAGAAGGCAGGTCA | + |
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Preference number: 1 (lower is better) Translates to: KASHLDAQGGRAATH*LDTQNFLSKSEGRS Trigger: TGACCTGCCTTCTGACTTTGACAGGAAGTTCTGCGTGTCCAATCAGTGGGTTGCTGCCCTCCCTCCCTGAGCATCCAAGTGTGAAGCCTT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000010506.10 ENSMUST00000133727.8 |
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| 3UTR GCA 90 bp | AAGCTTCTGAGCTGTCTTCCTCTTCATAAGAAACGAGGACTGCCCTaGTGCAGCAATCAGGAGAGCGGGCAGCACAGTATAGCTGAGCCT | + |
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Preference number: 1 (lower is better) Translates to: KLLSCLPLHKKRGLP*CSNQESGQHSIAEP Trigger: AGGCTCAGCTATACTGTGCTGCCCGCTCTCCTGATTGCTGCAGCAGGGCAGTCCTCGTTTCTTATGAAGAGGAAGACAGCTCAGAAGCTT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000133727.8 |
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| 3UTR GCA 90 bp | CTTCTGAGCTGTCTTCCTCTTCATAAGAAACGAGGACTGCCCTGCTaGAGCAATCAGGAGAGCGGGCAGCACAGTATAGCTGAGCCTAAT | + |
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Preference number: 1 (lower is better) Translates to: LLSCLPLHKKRGLPC*SNQESGQHSIAEPN Trigger: ATTAGGCTCAGCTATACTGTGCTGCCCGCTCTCCTGATTGCTGCAGCAGGGCAGTCCTCGTTTCTTATGAAGAGGAAGACAGCTCAGAAG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000133727.8 |
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| 3UTR TCA 90 bp | GACATTCTTCCTCCCTTTGGCTGGACTGACTCCAAGAGGAGCAGCTaGCCTGGATTAAATTCTGCAGCTCTTCTTCACTTCTGGCATCTA | + |
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Preference number: 1 (lower is better) Translates to: DILPPFGWTDSKRSS*PGLNSAALLHFWHL Trigger: TAGATGCCAGAAGTGAAGAAGAGCTGCAGAATTTAATCCAGGTCAGCTGCTCCTCTTGGAGTCAGTCCAGCCAAAGGGAGGAAGAATGTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000133727.8 |
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| 3UTR-3UTR GCA 90 bp | ACAAAGCCCAGCAAGATCAAGGCTTCACACTTGGATGCTCAGGGAGGGAGGGCAGGCTTCACACTTGGATaGTCAGGGAGGGAGGGCAGC | + |
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Preference number: 2 (lower is better) Translates to: TKPSKIKASHLDAQGGRAGFTLG*SGREGS Trigger: GCTGCCCTCCCTCCCTGAGCATCCAAGTGTGAAGCC...TGCCCTCCCTCCCTGAGCATCCAAGTGTGAAGCCTTGATCTTGCTGGGCTTTGT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000010506.10 ENSMUST00000133727.8 |
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| 3UTR-3UTR GCA 90 bp | TTCTGCAGCTCTTCTTCACTTCTGGCATCTAGATCCTCCGCCGTGGGCCTGTACGGCTTCACACTTGGATaGTCAGGGAGGGAGGGCAGC | + |
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Preference number: 2 (lower is better) Translates to: FCSSSSLLASRSSAVGLYGFTLG*SGREGS Trigger: GCTGCCCTCCCTCCCTGAGCATCCAAGTGTGAAGCC...GTACAGGCCCACGGCGGAGGATCTAGATGCCAGAAGTGAAGAAGAGCTGCAGAA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000133727.8 |
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| 3UTR-3UTR CCA 90 bp | CCTCTCCCCCAGAGCCCTCCTACAAAGCCCAGCAAGATCAAGGCTTCACACTTGCAGCAACCCACTGATTaGACACGCAGAACTTCCTGT | + |
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Preference number: 2 (lower is better) Translates to: PLPQSPPTKPSKIKASHLQQPTD*TRRTSC Trigger: ACAGGAAGTTCTGCGTGTCCAATCAGTGGGTTGCTG...CAAGTGTGAAGCCTTGATCTTGCTGGGCTTTGTAGGAGGGCTCTGGGGGAGAGG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000010506.10 ENSMUST00000133727.8 |
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| 3UTR-3UTR CCA 90 bp | CCTCCTTTAGACCTCTCCCCCAGAGCCCTCCTACAAAGCCCAGCAAGATCAAGGCAGCAACCCACTGATTaGACACGCAGAACTTCCTGT | + |
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Preference number: 2 (lower is better) Translates to: PPLDLSPRALLQSPARSRQQPTD*TRRTSC Trigger: ACAGGAAGTTCTGCGTGTCCAATCAGTGGGTTGCTG...CCTTGATCTTGCTGGGCTTTGTAGGAGGGCTCTGGGGGAGAGGTCTAAAGGAGG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000010506.10 ENSMUST00000133727.8 |
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| 3UTR CCA 72 bp | ACTCCACCGCGATCCTGCCACTTTCCAGAACCACGATaGTCAGCTTCTGGAAGGCATCTGATACAGCCGCCT | + |
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Preference number: 3 (lower is better) Translates to: TPPRSCHFPEPR*SASGRHLIQPP Trigger: AGGCGGCTGTATCAGATGCCTTCCAGAAGCTGACCATCGTGGTTCTGGAAAGTGGCAGGATCGCGGTGGAGT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000133727.8 |
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| 3UTR CCA 72 bp | TGGATGCTCAGGGAGGGAGGGCAGCAACCCACTGATTaGACACGCAGAACTTCCTGTCAAAGTCAGAAGGCA | + |
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Preference number: 3 (lower is better) Translates to: WMLREGGQQPTD*TRRTSCQSQKA Trigger: TGCCTTCTGACTTTGACAGGAAGTTCTGCGTGTCCAATCAGTGGGTTGCTGCCCTCCCTCCCTGAGCATCCA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000010506.10 ENSMUST00000133727.8 |
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| 3UTR CCA 72 bp | ATCCTGCCACTTTCCAGAACCACGATGGTCAGCTTCTaGAAGGCATCTGATACAGCCGCCTGGAAGGCAAGC | + |
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Preference number: 3 (lower is better) Translates to: ILPLSRTTMVSF*KASDTAAWKAS Trigger: GCTTGCCTTCCAGGCGGCTGTATCAGATGCCTTCCAGAAGCTGACCATCGTGGTTCTGGAAAGTGGCAGGAT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000133727.8 |
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| 3UTR-3UTR CAA 90 bp | CTTCCTGTCAAAGTCAGAAGGCAGGTCAGGTCACCTGACACGGTCAGAGGTGCTACATTCTTCCTCCCTTaGGCTGGACTGACTCCAAGA | + |
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Preference number: 3 (lower is better) Translates to: LPVKVRRQVRSPDTVRGATFFLP*AGLTPR Trigger: TCTTGGAGTCAGTCCAGCCAAAGGGAGGAAGAATGT...AGCACCTCTGACCGTGTCAGGTGACCTGACCTGCCTTCTGACTTTGACAGGAAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000133727.8 |
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| 3UTR GCA 72 bp | TGTCTTCCTCTTCATAAGAAACGAGGACTGCCCTGCTaGAGCAATCAGGAGAGCGGGCAGCACAGTATAGCT | + |
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Preference number: 3 (lower is better) Translates to: CLPLHKKRGLPC*SNQESGQHSIA Trigger: AGCTATACTGTGCTGCCCGCTCTCCTGATTGCTGCAGCAGGGCAGTCCTCGTTTCTTATGAAGAGGAAGACA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000133727.8 |
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| 3UTR TCA 72 bp | CCTCCCTTTGGCTGGACTGACTCCAAGAGGAGCAGCTaGCCTGGATTAAATTCTGCAGCTCTTCTTCACTTC | + |
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Preference number: 3 (lower is better) Translates to: PPFGWTDSKRSS*PGLNSAALLHF Trigger: GAAGTGAAGAAGAGCTGCAGAATTTAATCCAGGTCAGCTGCTCCTCTTGGAGTCAGTCCAGCCAAAGGGAGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000133727.8 |
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| 3UTR TCA 72 bp | AAATCCGAGAGACATTCTTCCTCCCTTTGGCTGGACTaGCTCCAAGAGGAGCAGCTGACCTGGATTAAATTC | + |
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Preference number: 3 (lower is better) Translates to: KSERHSSSLWLD*LQEEQLTWIKF Trigger: GAATTTAATCCAGGTCAGCTGCTCCTCTTGGAGTCAGTCCAGCCAAAGGGAGGAAGAATGTCTCTCGGATTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000133727.8 |
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| CDS-3UTR CCA 90 bp | TGGATGCTCAGGGAGGGAGGGCAGCAACCCACTGATTGGACACGCAGAACTTCCTGCCCTTCCTCCAGCTaGCGCAGAGGCTCCTCAGAG | + |
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Preference number: 4 (lower is better) Translates to: WMLREGGQQPTDWTRRTSCPSSS*RRGSSE Trigger: CTCTGAGGAGCCTCTGCGCCAGCTGGAGGAAGGGCA...GGAAGTTCTGCGTGTCCAATCAGTGGGTTGCTGCCCTCCCTCCCTGAGCATCCA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000010506.10 |
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| CDS-3UTR GCA 90 bp | AAGCCCAGCAAGATCAAGGCTTCACACTTGGATGCTCAGGGAGGGAGGGCAGCACGGCTGGGGGCCCAGTaGTCAGATCCCACACCAACA | + |
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Preference number: 4 (lower is better) Translates to: KPSKIKASHLDAQGGRAARLGAQ*SDPTPT Trigger: TGTTGGTGTGGGATCTGAGCACTGGGCCCCCAGCCG...TGCTGCCCTCCCTCCCTGAGCATCCAAGTGTGAAGCCTTGATCTTGCTGGGCTT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000010506.10 |
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| CDS-3UTR GCA 90 bp | CCCAGAGCCCTCCTACAAAGCCCAGCAAGATCAAGGCTTCACACTTGGATGCTCGCTGGCTCTGCCCCTTaGCGGCCACACCAGTGCTTC | + |
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Preference number: 4 (lower is better) Translates to: PRALLQSPARSRLHTWMLAGSAP*RPHQCF Trigger: GAAGCACTGGTGTGGCCGGCAAGGGGCAGAGCCAGC...GAGCATCCAAGTGTGAAGCCTTGATCTTGCTGGGCTTTGTAGGAGGGCTCTGGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000133727.8 |
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| CDS-3UTR CCA 90 bp | CCAGCAAGATCAAGGCTTCACACTTGGATGCTCAGGGAGGGAGGGCAGCAACCCACAGCGCAGAGGAACTaGGGGCTCCCCTTCTGCATG | + |
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Preference number: 4 (lower is better) Translates to: PARSRLHTWMLREGGQQPTAQRN*GLPFCM Trigger: CATGCAGAAGGGGAGCCCCCAGTTCCTCTGCGCTGT...GGGTTGCTGCCCTCCCTCCCTGAGCATCCAAGTGTGAAGCCTTGATCTTGCTGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000010506.10 ENSMUST00000133727.8 |
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| CDS-3UTR GCA 90 bp | GACACGCAGAACTTCCTGTCAAAGTCAGAAGGCAGGTCAGGTCACCTGACACGGGAGGCTCCTCAGAGATaGCAACCCCAGGGCTCCTGC | + |
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Preference number: 4 (lower is better) Translates to: DTQNFLSKSEGRSGHLTREAPQR*QPQGSC Trigger: GCAGGAGCCCTGGGGTTGGCATCTCTGAGGAGCCTC...CCGTGTCAGGTGACCTGACCTGCCTTCTGACTTTGACAGGAAGTTCTGCGTGTC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000010506.10 ENSMUST00000133727.8 |
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| CDS-3UTR GCA 90 bp | AGCCCTCCTACAAAGCCCAGCAAGATCAAGGCTTCACACTTGGATGCTCAGGGAGAGGCTCCTCAGAGATaGCAACCCCAGGGCTCCTGC | + |
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Preference number: 4 (lower is better) Translates to: SPPTKPSKIKASHLDAQGEAPQR*QPQGSC Trigger: GCAGGAGCCCTGGGGTTGGCATCTCTGAGGAGCCTC...TCCCTGAGCATCCAAGTGTGAAGCCTTGATCTTGCTGGGCTTTGTAGGAGGGCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000010506.10 ENSMUST00000133727.8 |
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| CDS-3UTR CCA 90 bp | ACACTTGGATGCTCAGGGAGGGAGGGCAGCAACCCACTGATTGGACACGCAGAACTTCCTCCCTTTGGCTaGACTGACTCCAAGAGGAGC | + |
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Preference number: 4 (lower is better) Translates to: TLGCSGREGSNPLIGHAELPPFG*TDSKRS Trigger: GCTCCTCTTGGAGTCAGTCCAGCCAAAGGGAGGAAG...TTCTGCGTGTCCAATCAGTGGGTTGCTGCCCTCCCTCCCTGAGCATCCAAGTGT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000010506.10 |
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| CDS-3UTR GCA 90 bp | AGGGAGGGAGGGCAGCAACCCACTGATTGGACACGCAGAACTTCCTGTCAAAGTGGCCTGATGCTGCAGTaGCTTGTGTCTGGTTCCAAG | + |
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Preference number: 4 (lower is better) Translates to: REGGQQPTDWTRRTSCQSGLMLQ*LVSGSK Trigger: CTTGGAACCAGACACAAGGCACTGCAGCATCAGGCC...ACTTTGACAGGAAGTTCTGCGTGTCCAATCAGTGGGTTGCTGCCCTCCCTCCCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000010506.10 ENSMUST00000133727.8 |
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| CDS-3UTR CCA 90 bp | ATTGGACACGCAGAACTTCCTGTCAAAGTCAGAAGGCAGGTCAGGTCACCTGACACAGCGCAGAGGAACTaGGGGCTCCCCTTCTGCATG | + |
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Preference number: 4 (lower is better) Translates to: IGHAELPVKVRRQVRSPDTAQRN*GLPFCM Trigger: CATGCAGAAGGGGAGCCCCCAGTTCCTCTGCGCTGT...GTCAGGTGACCTGACCTGCCTTCTGACTTTGACAGGAAGTTCTGCGTGTCCAAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000010506.10 ENSMUST00000133727.8 |
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| CDS-3UTR TCA 90 bp | AGGGAGGGAGGGCAGCAACCCACTGATTGGACACGCAGAACTTCCTGTCAAAGTCGGGAAGACTCGGACTaGATACAGAAGGCCAAACTG | + |
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Preference number: 4 (lower is better) Translates to: REGGQQPTDWTRRTSCQSREDSD*IQKAKL Trigger: CAGTTTGGCCTTCTGTATTCAGTCCGAGTCTTCCCG...ACTTTGACAGGAAGTTCTGCGTGTCCAATCAGTGGGTTGCTGCCCTCCCTCCCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000010506.10 |
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| CDS-3UTR CCA 90 bp | ACAAAGCCCAGCAAGATCAAGGCTTCACACTTGGATGCTCAGGGAGGGAGGGCAGCTCTTCTTCACTTCTaGCATCTAGATCCTCCGCCG | + |
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Preference number: 4 (lower is better) Translates to: TKPSKIKASHLDAQGGRAALLHF*HLDPPP Trigger: CGGCGGAGGATCTAGATGCCAGAAGTGAAGAAGAGC...TGCCCTCCCTCCCTGAGCATCCAAGTGTGAAGCCTTGATCTTGCTGGGCTTTGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000010506.10 |
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| CDS-3UTR TCA 90 bp | CCCCCAGAGCCCTCCTACAAAGCCCAGCAAGATCAAGGCTTCACACTTGGATGCTTCACTGGTGATGTCTaGAAAAGGGGTTTCCCATCG | + |
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Preference number: 4 (lower is better) Translates to: PPEPSYKAQQDQGFTLGCFTGDV*KRGFPS Trigger: CGATGGGAAACCCCTTTTTCAGACATCACCAGTGAA...GCATCCAAGTGTGAAGCCTTGATCTTGCTGGGCTTTGTAGGAGGGCTCTGGGGG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000010506.10 ENSMUST00000133727.8 |
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| CDS-3UTR TCA 90 bp | TCCCCCAGAGCCCTCCTACAAAGCCCAGCAAGATCAAGGCTTCACACTTGGATGTTTAGAGCAAAGGCCTaGTGCTGCAGTGCCTTGTGT | + |
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Preference number: 4 (lower is better) Translates to: SPRALLQSPARSRLHTWMFRAKA*CCSALC Trigger: ACACAAGGCACTGCAGCATCAGGCCTTTGCTCTAAA...CATCCAAGTGTGAAGCCTTGATCTTGCTGGGCTTTGTAGGAGGGCTCTGGGGGA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000010506.10 ENSMUST00000133727.8 |
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| CDS-3UTR GCA 90 bp | ATTGGACACGCAGAACTTCCTGTCAAAGTCAGAAGGCAGGTCAGGTCACCTGACATAAGAAACGAGGACTaGCCTTCCTCCAGCTGGCGC | + |
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Preference number: 4 (lower is better) Translates to: IGHAELPVKVRRQVRSPDIRNED*PSSSWR Trigger: GCGCCAGCTGGAGGAAGGGCAGTCCTCGTTTCTTAT...GTCAGGTGACCTGACCTGCCTTCTGACTTTGACAGGAAGTTCTGCGTGTCCAAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000010506.10 |
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| CDS-3UTR CCA 90 bp | AAGCCCAGCAAGATCAAGGCTTCACACTTGGATGCTCAGGGAGGGAGGGCAGCAGAGGAGCAGCTGACCTaGATTAAATTCTGCAGCTCT | + |
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Preference number: 4 (lower is better) Translates to: KPSKIKASHLDAQGGRAAEEQLT*IKFCSS Trigger: AGAGCTGCAGAATTTAATCCAGGTCAGCTGCTCCTC...TGCTGCCCTCCCTCCCTGAGCATCCAAGTGTGAAGCCTTGATCTTGCTGGGCTT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000010506.10 |
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| CDS-3UTR TCA 90 bp | TCCCCCAGAGCCCTCCTACAAAGCCCAGCAAGATCAAGGCTTCACACTTGGATGTTCACTGGTGATGTCTaGAAAAGGGGTTTCCCATCG | + |
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Preference number: 4 (lower is better) Translates to: SPRALLQSPARSRLHTWMFTGDV*KRGFPS Trigger: CGATGGGAAACCCCTTTTTCAGACATCACCAGTGAA...CATCCAAGTGTGAAGCCTTGATCTTGCTGGGCTTTGTAGGAGGGCTCTGGGGGA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000010506.10 ENSMUST00000133727.8 |
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| CDS-3UTR CCA 90 bp | CAGAACTTCCTGTCAAAGTCAGAAGGCAGGTCAGGTCACCTGACACGGTCAGAGACGATGGTCAGCTTCTaGAAGGCATCTGATACAGCC | + |
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Preference number: 4 (lower is better) Translates to: QNFLSKSEGRSGHLTRSETMVSF*KASDTA Trigger: GGCTGTATCAGATGCCTTCCAGAAGCTGACCATCGT...CTCTGACCGTGTCAGGTGACCTGACCTGCCTTCTGACTTTGACAGGAAGTTCTG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000010506.10 |
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| CDS-3UTR TCA 90 bp | AGCCCAGCAAGATCAAGGCTTCACACTTGGATGCTCAGGGAGGGAGGGCAGCAAACTGAGAGAACACTGTaGACAGAGAATGACTTAAGG | + |
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Preference number: 4 (lower is better) Translates to: SPARSRLHTWMLREGGQQTERTL*TENDLR Trigger: CCTTAAGTCATTCTCTGTTCACAGTGTTCTCTCAGT...TTGCTGCCCTCCCTCCCTGAGCATCCAAGTGTGAAGCCTTGATCTTGCTGGGCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000010506.10 |
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| CDS-3UTR GCA 90 bp | ACTTGGATGCTCAGGGAGGGAGGGCAGCAACCCACTGATTGGACACGCAGAACTACCTGGATTAAATTCTaGAGCTCTTCTTCACTTCTG | + |
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Preference number: 4 (lower is better) Translates to: TWMLREGGQQPTDWTRRTTWIKF*SSSSLL Trigger: CAGAAGTGAAGAAGAGCTGCAGAATTTAATCCAGGT...AGTTCTGCGTGTCCAATCAGTGGGTTGCTGCCCTCCCTCCCTGAGCATCCAAGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000010506.10 |
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| CDS-3UTR CAA 90 bp | ACACTTGGATGCTCAGGGAGGGAGGGCAGCAACCCACTGATTGGACACGCAGAAAGCTGGCTCTGCCCCTaGCCGGCCACACCAGTGCTT | + |
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Preference number: 5 (lower is better) Translates to: TLGCSGREGSNPLIGHAESWLCP*PATPVL Trigger: AAGCACTGGTGTGGCCGGCAAGGGGCAGAGCCAGCT...TTCTGCGTGTCCAATCAGTGGGTTGCTGCCCTCCCTCCCTGAGCATCCAAGTGT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000133727.8 |
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| CDS GCA 90 bp | GCAGAGGAACTGGGGGCTCCCCTTCTGCATGGGCACAGCGAGAGCTaGATCCTCCAGTCCGGAGAGCTCCTGCAGCTTGATGATCCTTTT | + |
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Preference number: 5 (lower is better) Translates to: AEELGAPLLHGHSES*ILQSGELLQLDDPF Trigger: AAAAGGATCATCAAGCTGCAGGAGCTCTCCGGACTGGAGGATGCAGCTCTCGCTGTGCCCATGCAGAAGGGGAGCCCCCAGTTCCTCTGC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000010506.10 ENSMUST00000133727.8 |
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| CDS-3UTR CAA 90 bp | AGAGCCCTCCTACAAAGCCCAGCAAGATCAAGGCTTCACACTTGGATGCTCAGGACATTCTTCCTCCCTTaGGCTGGACTGACTCCAAGA | + |
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Preference number: 5 (lower is better) Translates to: RALLQSPARSRLHTWMLRTFFLP*AGLTPR Trigger: TCTTGGAGTCAGTCCAGCCAAAGGGAGGAAGAATGT...CCTGAGCATCCAAGTGTGAAGCCTTGATCTTGCTGGGCTTTGTAGGAGGGCTCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000010506.10 |
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| CDS CCA 72 bp | CTGCCCCTTGCCGGCCACACCAGTGCTTCCTCCAGCTaGCGCAGAGGCTCCTCAGAGATGCCAACCCCAGGG | + |
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Preference number: 6 (lower is better) Translates to: LPLAGHTSASSS*RRGSSEMPTPG Trigger: CCCTGGGGTTGGCATCTCTGAGGAGCCTCTGCGCCAGCTGGAGGAAGCACTGGTGTGGCCGGCAAGGGGCAG 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000133727.8 |
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| CDS GCA 72 bp | CTGGGGGCTCCCCTTCTGCATGGGCACAGCGAGAGCTaGATCCTCCAGTCCGGAGAGCTCCTGCAGCTTGAT | + |
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Preference number: 6 (lower is better) Translates to: LGAPLLHGHSES*ILQSGELLQLD Trigger: ATCAAGCTGCAGGAGCTCTCCGGACTGGAGGATGCAGCTCTCGCTGTGCCCATGCAGAAGGGGAGCCCCCAG 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000010506.10 ENSMUST00000133727.8 |
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| CDS CCA 72 bp | CTCTTCATAAGAAACGAGGACTGCCCTTCCTCCAGCTaGCGCAGAGGCTCCTCAGAGATGCCAACCCCAGGG | + |
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Preference number: 6 (lower is better) Translates to: LFIRNEDCPSSS*RRGSSEMPTPG Trigger: CCCTGGGGTTGGCATCTCTGAGGAGCCTCTGCGCCAGCTGGAGGAAGGGCAGTCCTCGTTTCTTATGAAGAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000010506.10 |
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| CDS GCA 72 bp | AAGGGGTTTCCCATCGCAAGCCTTCTGGGCTCTCTGTaGGTCCCGCGAGGAGTAAAACTTGATGATGGCGTA | + |
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Preference number: 6 (lower is better) Translates to: KGFPIASLLGSL*VPRGVKLDDGV Trigger: TACGCCATCATCAAGTTTTACTCCTCGCGGGACGCACAGAGAGCCCAGAAGGCTTGCGATGGGAAACCCCTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000010506.10 |
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| CDS CAA 72 bp | GGGGGCCCAGTGCTCAGATCCCACACCAACAAAACTTaGTCGCTCTGGGTGGGAACTACGAAAGAGATCAAC | + |
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Preference number: 6 (lower is better) Translates to: GGPVLRSHTNKT*SLWVGTTKEIN Trigger: GTTGATCTCTTTCGTAGTTCCCACCCAGAGCGACAAAGTTTTGTTGGTGTGGGATCTGAGCACTGGGCCCCC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000010506.10 |
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| CDS TCA 72 bp | AGTTCCTGGCATCGTGAGCTGTTTAGAGCAAAGGCCTaGTGCTGCAGTGCCTTGTGTCTGGTTCCAAGACGA | + |
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Preference number: 6 (lower is better) Translates to: SSWHRELFRAKA*CCSALCLVPRR Trigger: TCGTCTTGGAACCAGACACAAGGCACTGCAGCATCAGGCCTTTGCTCTAAACAGCTCACGATGCCAGGAACT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000010506.10 ENSMUST00000133727.8 |
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