RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for RDH9 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000056148

Ensembl transcript IDs: ENSMUST00000052652.7, ENSMUST00000136223.2

Found 40 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp CTGGGGCAGCGCCATTTTCAGGCTCCAGACATCCGTCCACCTTCCTaGCCAGAGGACAGGTGTCCACTCAGCCTGGGAGGCCTTTGCCTC +
Preference number: 1 (lower is better)
Translates to: LGQRHFQAPDIRPPS*PEDRCPLSLGGLCL
Trigger: GAGGCAAAGGCCTCCCAGGCTGAGTGGACACCTGTCCTCTGGCCAGGAAGGTGGACGGATGTCTGGAGCCTGAAAATGGCGCTGCCCCAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000136223.2
3UTR GCA 90 bp CCTTCCTGGCCAGAGGACAGGTGTCCACTCAGCCTGGGAGGCCTTTaGCTCAAGATCCTCGGGAGCCATCTTGGTTCCGGGACTCCTTGG +
Preference number: 1 (lower is better)
Translates to: PSWPEDRCPLSLGGL*LKILGSHLGSGTPW
Trigger: CCAAGGAGTCCCGGAACCAAGATGGCTCCCGAGGATCTTGAGGCAAAGGCCTCCCAGGCTGAGTGGACACCTGTCCTCTGGCCAGGAAGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000136223.2
3UTR CCA 90 bp ACATCCGTCCACCTTCCTGGCCAGAGGACAGGTGTCCACTCAGCCTaGGAGGCCTTTGCCTCAAGATCCTCGGGAGCCATCTTGGTTCCG +
Preference number: 1 (lower is better)
Translates to: TSVHLPGQRTGVHSA*EAFASRSSGAILVP
Trigger: CGGAACCAAGATGGCTCCCGAGGATCTTGAGGCAAAGGCCTCCCAGGCTGAGTGGACACCTGTCCTCTGGCCAGGAAGGTGGACGGATGT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000136223.2
3UTR CCA 90 bp CAGTCTGCCGAGGTGAGAGTGTGGAATACAGAGGCTAGTAGTTTCTaGGACAGGCGAGAGCCACAGAGCTTCTGGGGCAGCGCCATTTTC +
Preference number: 1 (lower is better)
Translates to: QSAEVRVWNTEASSF*DRREPQSFWGSAIF
Trigger: GAAAATGGCGCTGCCCCAGAAGCTCTGTGGCTCTCGCCTGTCCCAGAAACTACTAGCCTCTGTATTCCACACTCTCACCTCGGCAGACTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000136223.2
3UTR TCA 90 bp GGAGTCAGGCATCTATGGGAACCCCTCCCCAGGGCACATCTGTATTaGGCCCAGGATTCTCTGTCTCTTCCACACATGATTTCCCTGCTC +
Preference number: 1 (lower is better)
Translates to: GVRHLWEPLPRAHLY*AQDSLSLPHMISLL
Trigger: GAGCAGGGAAATCATGTGTGGAAGAGACAGAGAATCCTGGGCTCAATACAGATGTGCCCTGGGGAGGGGTTCCCATAGATGCCTGACTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000052652.7
3UTR-3UTR CCA 90 bp TTGGTTCCGGGACTCCGCGGAGGGCAGTCTGCCGAGGTGAGAGTGTGGAATACAATCCGTCCACCTTCCTaGCCAGAGGACAGGTGTCCA +
Preference number: 2 (lower is better)
Translates to: LVPGLRGGQSAEVRVWNTIRPPS*PEDRCP
Trigger: TGGACACCTGTCCTCTGGCCAGGAAGGTGGACGGAT...TGTATTCCACACTCTCACCTCGGCAGACTGCCCTCCGCGGAGTCCCGGAACCAA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000136223.2
3UTR-3UTR CCA 90 bp GGAGGGCAGTCTGCCGAGGTGAGAGTGTGGAATACAGAGGCTAGTAGTTTCTGGGAGCCACAGAGCTTCTaGGGCAGCGCCATTTTCAGG +
Preference number: 2 (lower is better)
Translates to: GGQSAEVRVWNTEASSFWEPQSF*GSAIFR
Trigger: CCTGAAAATGGCGCTGCCCCAGAAGCTCTGTGGCTC...CCAGAAACTACTAGCCTCTGTATTCCACACTCTCACCTCGGCAGACTGCCCTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000136223.2
3UTR-3UTR TCA 90 bp AGAGCCACAGAGCTTCTGGGGCAGCGCCATTTTCAGGCTCCAGACATCCGTCCAAAACAATGGCTTCTGTaGCAGGCCGAAGCAACACAG +
Preference number: 2 (lower is better)
Translates to: RATELLGQRHFQAPDIRPKQWLL*QAEATQ
Trigger: CTGTGTTGCTTCGGCCTGTCACAGAAGCCATTGTTT...TGGACGGATGTCTGGAGCCTGAAAATGGCGCTGCCCCAGAAGCTCTGTGGCTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000136223.2
3UTR-3UTR TCA 90 bp TTCTCCTGCGTCCCCTCTTCCCCCACATTTCTACTGAGAGAAGAGGAGTCAGGCAGGGCACATCTGTATTaGGCCCAGGATTCTCTGTCT +
Preference number: 2 (lower is better)
Translates to: FSCVPSSPTFLLREEESGRAHLY*AQDSLS
Trigger: AGACAGAGAATCCTGGGCTCAATACAGATGTGCCCT...GCCTGACTCCTCTTCTCTCAGTAGAAATGTGGGGGAAGAGGGGACGCAGGAGAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000052652.7
3UTR-3UTR CCA 90 bp GGAGGGCAGTCTGCCGAGGTGAGAGTGTGGAATACAGAGGCTAGTAGTTTCTGGGGTTCCGGGACTCCTTaGAAAGTAGTCTACACAGGT +
Preference number: 2 (lower is better)
Translates to: GGQSAEVRVWNTEASSFWGSGTP*KVVYTG
Trigger: ACCTGTGTAGACTACTTTCCAAGGAGTCCCGGAACC...CCAGAAACTACTAGCCTCTGTATTCCACACTCTCACCTCGGCAGACTGCCCTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000136223.2
3UTR-3UTR CCA 90 bp AGATTGATAAGGCAGTGGGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGGCCGAGGTGAGAGTGTaGAATACAGAGGCTAGTAGT +
Preference number: 2 (lower is better)
Translates to: RLIRQWGVCVCVCVCVCVAEVRV*NTEASS
Trigger: ACTACTAGCCTCTGTATTCCACACTCTCACCTCGGC...CACACACACACACACACACACACACACACACACACCCCACTGCCTTATCAATCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000136223.2
3UTR-3UTR TCA 90 bp GAGATTGATAAGGCAGTGGGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGAGTGAGGACTACTaGAACAATGGCTTCTGTGAC +
Preference number: 2 (lower is better)
Translates to: EIDKAVGCVCVCVCVCVCESEDY*NNGFCD
Trigger: GTCACAGAAGCCATTGTTTCAGTAGTCCTCACTCTC...ACACACACACACACACACACACACACACACACACCCCACTGCCTTATCAATCTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000136223.2
3UTR-3UTR TCA 90 bp ATTCTGTCCATGGACTTGCATGCACAGGCTTCTGCCTTATGTGTTATTATTAAGGGAGAATTAATGAGATaGAGTGTGTTGACTAGAACC +
Preference number: 2 (lower is better)
Translates to: ILSMDLHAQASALCVIIKGELMR*SVLTRT
Trigger: GGTTCTAGTCAACACACTTCATCTCATTAATTCTCC...CTTAATAATAACACATAAGGCAGAAGCCTGTGCATGCAAGTCCATGGACAGAAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052652.7
3UTR CCA 72 bp CACCTTCCTGGCCAGAGGACAGGTGTCCACTCAGCCTaGGAGGCCTTTGCCTCAAGATCCTCGGGAGCCATC +
Preference number: 3 (lower is better)
Translates to: HLPGQRTGVHSA*EAFASRSSGAI
Trigger: GATGGCTCCCGAGGATCTTGAGGCAAAGGCCTCCCAGGCTGAGTGGACACCTGTCCTCTGGCCAGGAAGGTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000136223.2
3UTR CCA 72 bp GGACTCCGCGGAGGGCAGTCTGCCGAGGTGAGAGTGTaGAATACAGAGGCTAGTAGTTTCTGGGACAGGCGA +
Preference number: 3 (lower is better)
Translates to: GLRGGQSAEVRV*NTEASSFWDRR
Trigger: TCGCCTGTCCCAGAAACTACTAGCCTCTGTATTCCACACTCTCACCTCGGCAGACTGCCCTCCGCGGAGTCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000136223.2
3UTR GCA 72 bp TCTTATAATGGCGATTGCTCACGGCACACACGCGATTaGTCGCGGCACGGCTCTCCACACCTTCCCATCTCT +
Preference number: 3 (lower is better)
Translates to: SYNGDCSRHTRD*SRHGSPHLPIS
Trigger: AGAGATGGGAAGGTGTGGAGAGCCGTGCCGCGAGCAATCGCGTGTGTGCCGTGAGCAATCGCCATTATAAGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052652.7
3UTR CCA 72 bp GAGGTGAGAGTGTGGAATACAGAGGCTAGTAGTTTCTaGGACAGGCGAGAGCCACAGAGCTTCTGGGGCAGC +
Preference number: 3 (lower is better)
Translates to: EVRVWNTEASSF*DRREPQSFWGS
Trigger: GCTGCCCCAGAAGCTCTGTGGCTCTCGCCTGTCCCAGAAACTACTAGCCTCTGTATTCCACACTCTCACCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000136223.2
3UTR CCA 72 bp TTTCACCACCAGGAACTGAACCTTCCACGCAGAGGCTaGCAAGCTGACTCCAGGGAATGGGTGCTGGCATTA +
Preference number: 3 (lower is better)
Translates to: FHHQELNLPRRG*QADSREWVLAL
Trigger: TAATGCCAGCACCCATTCCCTGGAGTCAGCTTGCCAGCCTCTGCGTGGAAGGTTCAGTTCCTGGTGGTGAAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052652.7
3UTR-3UTR CAA 90 bp AAAGAGATTGATAAGGCAGTGGGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCAGCCTGGGAGGCCTTaGCCTCAAGATCCTCGGGAG +
Preference number: 3 (lower is better)
Translates to: KEIDKAVGCVCVCVCVCVQPGRP*PQDPRE
Trigger: CTCCCGAGGATCTTGAGGCAAAGGCCTCCCAGGCTG...CACACACACACACACACACACACACACACACCCCACTGCCTTATCAATCTCTTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000136223.2
3UTR TCA 72 bp GTGTGTGTGTGTATAAGAGAGAGACCACAGAGCTTCTaGGGTGGCGCCATTTTCGGCTCCAGACAACTGGCC +
Preference number: 3 (lower is better)
Translates to: VCVCIRERPQSF*GGAIFGSRQLA
Trigger: GGCCAGTTGTCTGGAGCCGAAAATGGCGCCACCTCAGAAGCTCTGTGGTCTCTCTCTTATACACACACACAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000136223.2
3UTR GCA 72 bp GACTCCCTCAGACTTTATACCATGGACAGAGGTGACTaGAGAGCAGGGACACTTCCATGCTGCATAGGGCTT +
Preference number: 3 (lower is better)
Translates to: DSLRLYTMDRGD*RAGTLPCCIGL
Trigger: AAGCCCTATGCAGCATGGAAGTGTCCCTGCTCTGCAGTCACCTCTGTCCATGGTATAAAGTCTGAGGGAGTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052652.7
3UTR CCA 72 bp AAGATCCTCGGGAGCCATCTTGGTTCCGGGACTCCTTaGAAAGTAGTCTACACAGGTGAGAGTGAGGACTAC +
Preference number: 3 (lower is better)
Translates to: KILGSHLGSGTP*KVVYTGESEDY
Trigger: GTAGTCCTCACTCTCACCTGTGTAGACTACTTTCCAAGGAGTCCCGGAACCAAGATGGCTCCCGAGGATCTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000136223.2
3UTR GCA 72 bp CTGGCAGGAAGGGATGAGACAGTCAAAGAAAGTAACTaGTGGCCTGTGCCAATCCTTCTCAGGACATTCCCT +
Preference number: 3 (lower is better)
Translates to: LAGRDETVKESN*WPVPILLRTFP
Trigger: AGGGAATGTCCTGAGAAGGATTGGCACAGGCCAGCAGTTACTTTCTTTGACTGTCTCATCCCTTCCTGCCAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052652.7
3UTR GCA 72 bp GGGATGAGACAGTCAAAGAAAGTAACTGCTGGCCTGTaGCAATCCTTCTCAGGACATTCCCTTTACCTCTGT +
Preference number: 3 (lower is better)
Translates to: GMRQSKKVTAGL*QSFSGHSLYLC
Trigger: ACAGAGGTAAAGGGAATGTCCTGAGAAGGATTGGCACAGGCCAGCAGTTACTTTCTTTGACTGTCTCATCCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052652.7
3UTR CCA 72 bp GCAGGAAGGGATGAGACAGTCAAAGAAAGTAACTGCTaGCCTGTGCCAATCCTTCTCAGGACATTCCCTTTA +
Preference number: 3 (lower is better)
Translates to: AGRDETVKESNC*PVPILLRTFPL
Trigger: TAAAGGGAATGTCCTGAGAAGGATTGGCACAGGCCAGCAGTTACTTTCTTTGACTGTCTCATCCCTTCCTGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052652.7
3UTR CCA 72 bp TTAAGTTTTAAATGGAGAGCAGTTGTTCCCACTCACTaGCAGGAAGGGATGAGACAGTCAAAGAAAGTAACT +
Preference number: 3 (lower is better)
Translates to: LSFKWRAVVPTH*QEGMRQSKKVT
Trigger: AGTTACTTTCTTTGACTGTCTCATCCCTTCCTGCCAGTGAGTGGGAACAACTGCTCTCCATTTAAAACTTAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052652.7
CDS-3UTR TCA 90 bp CCGCCCAGCCCGGGAGGCTTCTGCCTCAGGTTCCGCGGAAGCCATCTTGGTTCCCGCTCCTTCACCCACTaGGTGGCTGTCACAATACTC +
Preference number: 4 (lower is better)
Translates to: PPSPGGFCLRFRGSHLGSRSFTH*VAVTIL
Trigger: GAGTATTGTGACAGCCACTCAGTGGGTGAAGGAGCG...GGAACCAAGATGGCTTCCGCGGAACCTGAGGCAGAAGCCTCCCGGGCTGGGCGG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000136223.2
CDS-3UTR TCA 90 bp TCCTGCGTCCCCTCTTCCCCCACATTTCTACTGAGAGAAGAGGAGTCAGGCATCCGCTCCTTCACCCACTaGGTGGCTGTCACAATACTC +
Preference number: 4 (lower is better)
Translates to: SCVPSSPTFLLREEESGIRSFTH*VAVTIL
Trigger: GAGTATTGTGACAGCCACTCAGTGGGTGAAGGAGCG...GATGCCTGACTCCTCTTCTCTCAGTAGAAATGTGGGGGAAGAGGGGACGCAGGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000052652.7
CDS-3UTR GCA 90 bp TTGCCTCAAGATCCTCGGGAGCCATCTTGGTTCCGGGACTCCTTGGAAAGTAGTCAGCCAACACTCTCATaGCTCTCCTGTCCAGCTGTC +
Preference number: 4 (lower is better)
Translates to: LPQDPREPSWFRDSLESSQPTLS*LSCPAV
Trigger: GACAGCTGGACAGGAGAGGCATGAGAGTGTTGGCTG...ACTACTTTCCAAGGAGTCCCGGAACCAAGATGGCTCCCGAGGATCTTGAGGCAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000136223.2
CDS-3UTR GCA 90 bp GTTCCCACTCACTGGCAGGAAGGGATGAGACAGTCAAAGAAAGTAACTGCTGGCCAGCCAACACTCTCATaGCTCTCCTGTCCAGCTGTC +
Preference number: 4 (lower is better)
Translates to: VPTHWQEGMRQSKKVTAGQPTLS*LSCPAV
Trigger: GACAGCTGGACAGGAGAGGCATGAGAGTGTTGGCTG...GCCAGCAGTTACTTTCTTTGACTGTCTCATCCCTTCCTGCCAGTGAGTGGGAAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052652.7
CDS-3UTR GCA 90 bp CAGAAATCATTGTTTATTTACAAGTTTCTCCTGCGTCCCCTCTTCCCCCACATTCACATCCAGTACATGTaGAAAGTCCTGTTTCTTCAT +
Preference number: 4 (lower is better)
Translates to: QKSLFIYKFLLRPLFPHIHIQYM*KVLFLH
Trigger: ATGAAGAAACAGGACTTTGCACATGTACTGGATGTG...AATGTGGGGGAAGAGGGGACGCAGGAGAAACTTGTAAATAAACAATGATTTCTG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000052652.7
CDS-3UTR CAA 90 bp CATCTTGGTTCCGGGACTCCGCGGAGGGCAGTCTGCCGAGGTGAGAGTGTGGAAAGCCTGTCAGATGTCTaGTTCCTCAGCTCCTCGGCT +
Preference number: 5 (lower is better)
Translates to: HLGSGTPRRAVCRGESVESLSDV*FLSSSA
Trigger: AGCCGAGGAGCTGAGGAACAAGACATCTGACAGGCT...TTCCACACTCTCACCTCGGCAGACTGCCCTCCGCGGAGTCCCGGAACCAAGATG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000136223.2
CDS-3UTR CAA 90 bp TTTCTCCTGCGTCCCCTCTTCCCCCACATTTCTACTGAGAGAAGAGGAGTCAGGAGCCTGTCAGATGTCTaGTTCCTCAGCTCCTCGGCT +
Preference number: 5 (lower is better)
Translates to: FLLRPLFPHISTERRGVRSLSDV*FLSSSA
Trigger: AGCCGAGGAGCTGAGGAACAAGACATCTGACAGGCT...CCTGACTCCTCTTCTCTCAGTAGAAATGTGGGGGAAGAGGGGACGCAGGAGAAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000052652.7
CDS-3UTR CAA 90 bp GGAGGGCAGTCTGCCGAGGTGAGAGTGTGGAATACAGAGGCTAGTAGTTTCTGGGAAGACATACTTGTCTaGGAGATAGCTCACCACCTG +
Preference number: 5 (lower is better)
Translates to: GGQSAEVRVWNTEASSFWEDILV*EIAHHL
Trigger: CAGGTGGTGAGCTATCTCCAAGACAAGTATGTCTTC...CCAGAAACTACTAGCCTCTGTATTCCACACTCTCACCTCGGCAGACTGCCCTCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000136223.2
CDS-3UTR CAA 90 bp CAACCTAGCAGCAGGCAGAGCCAGATCTCAGAGGCCATGGGAAGTTCAAGACCCACAATACTCTCTGTCTaGGTGACATCCAGGATCACT +
Preference number: 5 (lower is better)
Translates to: QPSSRQSQISEAMGSSRPTILSV*VTSRIT
Trigger: AGTGATCCTGGATGTCACCAAGACAGAGAGTATTGT...GGGTCTTGAACTTCCCATGGCCTCTGAGATCTGGCTCTGCCTGCTGCTAGGTTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052652.7
CDS-3UTR CAA 90 bp CAGAAATCATTGTTTATTTACAAGTTTCTCCTGCGTCCCCTCTTCCCCCACATTAAAGACAGGTCCTTGTaGCACCTCTTGTCCAATTCG +
Preference number: 5 (lower is better)
Translates to: QKSLFIYKFLLRPLFPHIKDRSL*HLLSNS
Trigger: CGAATTGGACAAGAGGTGCAACAAGGACCTGTCTTT...AATGTGGGGGAAGAGGGGACGCAGGAGAAACTTGTAAATAAACAATGATTTCTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000052652.7
CDS-3UTR CAA 90 bp CTTCTGCCTTATGTGTTATTATTAAGTTTTAAATGGAGAGCAGTTGTTCCCACTGAAGACATACTTGTCTaGGAGATAGCTCACCACCTG +
Preference number: 5 (lower is better)
Translates to: LLPYVLLLSFKWRAVVPTEDILV*EIAHHL
Trigger: CAGGTGGTGAGCTATCTCCAAGACAAGTATGTCTTC...AGTGGGAACAACTGCTCTCCATTTAAAACTTAATAATAACACATAAGGCAGAAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052652.7
CDS CAA 72 bp CCACACAAAGATACTCGGCCCAAGACACTGGCGACGTaGATCACACGACCCCTTGCCTTCCTCACTAAGGGC +
Preference number: 6 (lower is better)
Translates to: PHKDTRPKTLAT*ITRPLAFLTKG
Trigger: GCCCTTAGTGAGGAAGGCAAGGGGTCGTGTGATCAACGTCGCCAGTGTCTTGGGCCGAGTATCTTTGTGTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052652.7
CDS TCA 72 bp CACACAAAGATACTCGGCCCAAGACACTGGCGACGTTaGTCACACGACCCCTTGCCTTCCTCACTAAGGGCA +
Preference number: 6 (lower is better)
Translates to: HTKILGPRHWRR*SHDPLPSSLRA
Trigger: TGCCCTTAGTGAGGAAGGCAAGGGGTCGTGTGATCAACGTCGCCAGTGTCTTGGGCCGAGTATCTTTGTGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052652.7
CDS GCA 72 bp CTCGATCAAGCCCAACAGGTTCACATCCAGTACATGTaGAAAGTCCTGTTTCTTCATCCACTCGTTGGGACC +
Preference number: 6 (lower is better)
Translates to: LDQAQQVHIQYM*KVLFLHPLVGT
Trigger: GGTCCCAACGAGTGGATGAAGAAACAGGACTTTGCACATGTACTGGATGTGAACCTGTTGGGCTTGATCGAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052652.7