RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for RDH8 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000053773

Ensembl transcript IDs: ENSMUST00000066387.6

Found 70 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR-3UTR GCA 90 bp CAGAGTGATGTAAAGCCATGGCTGGAACCTCCTCAACTCCCTCTGCCTCCCACTCTCTGGGCAGAGCCCTaGTGTTCCAGGTGGAAGGGT +
Preference number: 2 (lower is better)
Translates to: QSDVKPWLEPPQLPLPPTLWAEP*CSRWKG
Trigger: ACCCTTCCACCTGGAACAGCAGGGCTCTGCCCAGAG...AGTGGGAGGCAGAGGGAGTTGAGGAGGTTCCAGCCATGGCTTTACATCACTCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066387.6
3UTR-3UTR CCA 90 bp TGGACTGCAGCAATGCAGAACCAAGTGTGGGCCTGTCTCCAGCATCGGCTGAACAGTGATGTAAAGCCATaGCTGGAACCTCCTCAACTC +
Preference number: 2 (lower is better)
Translates to: WTAAMQNQVWACLQHRLNSDVKP*LEPPQL
Trigger: GAGTTGAGGAGGTTCCAGCCATGGCTTTACATCACT...GTTCAGCCGATGCTGGAGACAGGCCCACACTTGGTTCTGCATTGCTGCAGTCCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066387.6
3UTR-3UTR TCA 90 bp CTCTCTTCGATGCAGCTGAGTCTGACTCAGTGTGATTTCAGCAGCATAGGAATGCTTCCCCCATGGGCCTaGATGAGTGAACAAGAGAGT +
Preference number: 2 (lower is better)
Translates to: LSSMQLSLTQCDFSSIGMLPPWA*MSEQES
Trigger: ACTCTCTTGTTCACTCATTCAGGCCCATGGGGGAAG...CATTCCTATGCTGCTGAAATCACACTGAGTCAGACTCAGCTGCATCGAAGAGAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000066387.6
3UTR-3UTR GCA 90 bp CAGCTGAGTCTGACTCAGTGTGATTTCAGCAGCATAGGAATGTATGGTGAGTTCCTCCTCAACTCCCTCTaGCTCCCACTCCATCCCAAA +
Preference number: 2 (lower is better)
Translates to: QLSLTQCDFSSIGMYGEFLLNSL*LPLHPK
Trigger: TTTGGGATGGAGTGGGAGGCAGAGGGAGTTGAGGAG...GAACTCACCATACATTCCTATGCTGCTGAAATCACACTGAGTCAGACTCAGCTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066387.6
3UTR-3UTR TCA 90 bp CACCAGCTTCCCCTGGCTGTGTTTGTTTGTATAGTTACCACTCTTAGCAATGAGGAGTCTGACTCAGTGTaGTTTCAGCAGCATAGGAAT +
Preference number: 2 (lower is better)
Translates to: HQLPLAVFVCIVTTLSNEESDSV*FQQHRN
Trigger: ATTCCTATGCTGCTGAAATCACACTGAGTCAGACTC...CTCATTGCTAAGAGTGGTAACTATACAAACAAACACAGCCAGGGGAAGCTGGTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066387.6
3UTR GCA 72 bp GTCCTGCCTGAGCTGGGGACGACTGGACTGCAGCAATaGAGAACCAAGTGTGGGCCTGTCTCCAGCATCGGC +
Preference number: 3 (lower is better)
Translates to: VLPELGTTGLQQ*RTKCGPVSSIG
Trigger: GCCGATGCTGGAGACAGGCCCACACTTGGTTCTGCATTGCTGCAGTCCAGTCGTCCCCAGCTCAGGCAGGAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066387.6
3UTR CCA 72 bp GGGGACGACTGGACTGCAGCAATGCAGAACCAAGTGTaGGCCTGTCTCCAGCATCGGCTGAACTTGGGCCAG +
Preference number: 3 (lower is better)
Translates to: GDDWTAAMQNQV*ACLQHRLNLGQ
Trigger: CTGGCCCAAGTTCAGCCGATGCTGGAGACAGGCCCACACTTGGTTCTGCATTGCTGCAGTCCAGTCGTCCCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066387.6
3UTR GCA 72 bp GATGGGTTGTCCTGCCTGAGCTGGGGACGACTGGACTaGAGCAATGCAGAACCAAGTGTGGGCCTGTCTCCA +
Preference number: 3 (lower is better)
Translates to: DGLSCLSWGRLD*SNAEPSVGLSP
Trigger: TGGAGACAGGCCCACACTTGGTTCTGCATTGCTGCAGTCCAGTCGTCCCCAGCTCAGGCAGGACAACCCATC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066387.6
CDS-3UTR TCA 90 bp TCCTGCCTGAGCTGGGGACGACTGGACTGCAGCAATGCAGAACCAAGTGTGGGCAAGAGCAGCCAGAGATaGGCACCGTCCGCTGCTGAG +
Preference number: 4 (lower is better)
Translates to: SCLSWGRLDCSNAEPSVGKSSQR*APSAAE
Trigger: CTCAGCAGCGGACGGTGCTCATCTCTGGCTGCTCTT...GCCCACACTTGGTTCTGCATTGCTGCAGTCCAGTCGTCCCCAGCTCAGGCAGGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066387.6
CDS-3UTR TCA 90 bp TCCTGCCTGAGCTGGGGACGACTGGACTGCAGCAATGCAGAACCAAGTGTGGGCACCACGATGTGGCCCTaGCGCCTCCTCTTCATGCCT +
Preference number: 4 (lower is better)
Translates to: SCLSWGRLDCSNAEPSVGTTMWP*RLLFMP
Trigger: AGGCATGAAGAGGAGGCGTCAGGGCCACATCGTGGT...GCCCACACTTGGTTCTGCATTGCTGCAGTCCAGTCGTCCCCAGCTCAGGCAGGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066387.6
CDS-3UTR TCA 90 bp TCCTGCCTGAGCTGGGGACGACTGGACTGCAGCAATGCAGAACCAAGTGTGGGCATCGGAGACCAAGGTTaGGGAGGTGAGGCCAGCGAA +
Preference number: 4 (lower is better)
Translates to: SCLSWGRLDCSNAEPSVGIGDQG*GGEASE
Trigger: TTCGCTGGCCTCACCTCCTCAACCTTGGTCTCCGAT...GCCCACACTTGGTTCTGCATTGCTGCAGTCCAGTCGTCCCCAGCTCAGGCAGGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066387.6
CDS-3UTR GCA 90 bp GGGGACGACTGGACTGCAGCAATGCAGAACCAAGTGTGGGCCTGTCTCCAGCATGAGTGTTGGTCTGTCTaGGGAGTGGGGGTCTGGTGG +
Preference number: 4 (lower is better)
Translates to: GDDWTAAMQNQVWACLQHECWSV*GVGVWW
Trigger: CCACCAGACCCCCACTCCGCAGACAGACCAACACTC...ATGCTGGAGACAGGCCCACACTTGGTTCTGCATTGCTGCAGTCCAGTCGTCCCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000066387.6
CDS-3UTR CCA 90 bp GTTGTCCTGCCTGAGCTGGGGACGACTGGACTGCAGCAATGCAGAACCAAGTGTAGGCCACACACGTGTTaGGAGGCAGCCACAGGCCAG +
Preference number: 4 (lower is better)
Translates to: VVLPELGTTGLQQCRTKCRPHTC*EAATGQ
Trigger: CTGGCCTGTGGCTGCCTCCCAACACGTGTGTGGCCT...ACACTTGGTTCTGCATTGCTGCAGTCCAGTCGTCCCCAGCTCAGGCAGGACAAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066387.6
CDS-3UTR TCA 90 bp GTACTGACTGTCTCTGGGCAGAGCCCTGCTGTTCCAGGTGGAAGGGTGGGACAGCTGGAAGCACAGCTTTaGCCAGACGGACAGCTCCAA +
Preference number: 4 (lower is better)
Translates to: VLTVSGQSPAVPGGRVGQLEAQL*PDGQLQ
Trigger: TTGGAGCTGTCCGTCTGGTCAAAGCTGTGCTTCCAG...CTGTCCCACCCTTCCACCTGGAACAGCAGGGCTCTGCCCAGAGACAGTCAGTAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066387.6
CDS-3UTR CCA 90 bp TGGACTGCAGCAATGCAGAACCAAGTGTGGGCCTGTCTCCAGCATCGGCTGAACCCAGGTCCCTCATGGTaGCCACCACCTGGTAACGCT +
Preference number: 4 (lower is better)
Translates to: WTAAMQNQVWACLQHRLNPGPSW*PPPGNA
Trigger: AGCGTTACCAGGTGGTGGCCACCATGAGGGACCTGG...GTTCAGCCGATGCTGGAGACAGGCCCACACTTGGTTCTGCATTGCTGCAGTCCA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066387.6
CDS-3UTR TCA 90 bp TGGACTGCAGCAATGCAGAACCAAGTGTGGGCCTGTCTCCAGCATCGGCTGAACCTTCAAAGTCAGTGGTaGCTGGGCCTGGCTCCACCA +
Preference number: 4 (lower is better)
Translates to: WTAAMQNQVWACLQHRLNLQSQW*LGLAPP
Trigger: TGGTGGAGCCAGGCCCAGTCACCACTGACTTTGAAG...GTTCAGCCGATGCTGGAGACAGGCCCACACTTGGTTCTGCATTGCTGCAGTCCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066387.6
CDS-3UTR CCA 90 bp GACTGGACTGCAGCAATGCAGAACCAAGTGTGGGCCTGTCTCCAGCATCGGCTGTTGCACACGTCCAGCTaGACCACGCTGAGGGTCTTT +
Preference number: 4 (lower is better)
Translates to: DWTAAMQNQVWACLQHRLLHTSS*TTLRVF
Trigger: AAAGACCCTCAGCGTGGTCCAGCTGGACGTGTGCAA...CAGCCGATGCTGGAGACAGGCCCACACTTGGTTCTGCATTGCTGCAGTCCAGTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066387.6
CDS-3UTR CCA 90 bp GTACTGACTGTCTCTGGGCAGAGCCCTGCTGTTCCAGGTGGAAGGGTGGGACAGCCTCCTCTTCATGCCTaGAAGCACAGCTTTGACCAG +
Preference number: 4 (lower is better)
Translates to: VLTVSGQSPAVPGGRVGQPPLHA*KHSFDQ
Trigger: CTGGTCAAAGCTGTGCTTCCAGGCATGAAGAGGAGG...CTGTCCCACCCTTCCACCTGGAACAGCAGGGCTCTGCCCAGAGACAGTCAGTAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066387.6
CDS-3UTR CCA 90 bp GTTGTCCTGCCTGAGCTGGGGACGACTGGACTGCAGCAATGCAGAACCAAGTGTAGCGGAAGAGCTCCCTaGAGGCTGGGAGGTACAAGT +
Preference number: 4 (lower is better)
Translates to: VVLPELGTTGLQQCRTKCSGRAP*RLGGTS
Trigger: ACTTGTACCTCCCAGCCTCCAGGGAGCTCTTCCGCT...ACACTTGGTTCTGCATTGCTGCAGTCCAGTCGTCCCCAGCTCAGGCAGGACAAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066387.6
3UTR CAA 72 bp AACCAAGTGTGGGCCTGTCTCCAGCATCGGCTGAACTaGGGCCAGCCTCCCTGTCAGGTCAGCAATAACATC +
Preference number: 4 (lower is better)
Translates to: NQVWACLQHRLN*GQPPCQVSNNI
Trigger: GATGTTATTGCTGACCTGACAGGGAGGCTGGCCCAAGTTCAGCCGATGCTGGAGACAGGCCCACACTTGGTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066387.6
CDS-3UTR GCA 90 bp GTACTGACTGTCTCTGGGCAGAGCCCTGCTGTTCCAGGTGGAAGGGTGGGACAGTCACTGATTCATCATTaGACACGTCCAGCTGGACCA +
Preference number: 4 (lower is better)
Translates to: VLTVSGQSPAVPGGRVGQSLIHH*TRPAGP
Trigger: TGGTCCAGCTGGACGTGTGCAATGATGAATCAGTGA...CTGTCCCACCCTTCCACCTGGAACAGCAGGGCTCTGCCCAGAGACAGTCAGTAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066387.6
CDS-3UTR TCA 90 bp TGGACTGCAGCAATGCAGAACCAAGTGTGGGCCTGTCTCCAGCATCGGCTGAACTCCGCCTTGGAAACCTaGGCCAGAAGTTTTCCTTCA +
Preference number: 4 (lower is better)
Translates to: WTAAMQNQVWACLQHRLNSALET*ARSFPS
Trigger: TGAAGGAAAACTTCTGGCTCAGGTTTCCAAGGCGGA...GTTCAGCCGATGCTGGAGACAGGCCCACACTTGGTTCTGCATTGCTGCAGTCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066387.6
CDS-3UTR CCA 90 bp CTCTCTTCGATGCAGCTGAGTCTGACTCAGTGTGATTTCAGCAGCATAGGAATGTCCCCAGGTCCCTCATaGTGGCCACCACCTGGTAAC +
Preference number: 4 (lower is better)
Translates to: LSSMQLSLTQCDFSSIGMSPGPS*WPPPGN
Trigger: GTTACCAGGTGGTGGCCACCATGAGGGACCTGGGGA...CATTCCTATGCTGCTGAAATCACACTGAGTCAGACTCAGCTGCATCGAAGAGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066387.6
CDS-3UTR CCA 90 bp TGGACTGCAGCAATGCAGAACCAAGTGTGGGCCTGTCTCCAGCATCGGCTGAACCTTCTAGGGCAAACTTaGAGGCTGCATAGACGTCAT +
Preference number: 4 (lower is better)
Translates to: WTAAMQNQVWACLQHRLNLLGQT*RLHRRH
Trigger: ATGACGTCTATGCAGCCTCCAAGTTTGCCCTAGAAG...GTTCAGCCGATGCTGGAGACAGGCCCACACTTGGTTCTGCATTGCTGCAGTCCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066387.6
CDS-3UTR CCA 90 bp CTCTCTTCGATGCAGCTGAGTCTGACTCAGTGTGATTTCAGCAGCATAGGAATGCGAAAAAGGAGCCTGTaGGCAGTTTTCACATACAGG +
Preference number: 4 (lower is better)
Translates to: LSSMQLSLTQCDFSSIGMRKRSL*AVFTYR
Trigger: CCTGTATGTGAAAACTGCCCACAGGCTCCTTTTTCG...CATTCCTATGCTGCTGAAATCACACTGAGTCAGACTCAGCTGCATCGAAGAGAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000066387.6
CDS-3UTR TCA 90 bp CAGCTGAGTCTGACTCAGTGTGATTTCAGCAGCATAGGAATGTATGGTGAGTTCGCCTGGCTCCACCATTaGGATGAAGATATTGAATTG +
Preference number: 4 (lower is better)
Translates to: QLSLTQCDFSSIGMYGEFAWLHH*DEDIEL
Trigger: CAATTCAATATCTTCATCTCAATGGTGGAGCCAGGC...GAACTCACCATACATTCCTATGCTGCTGAAATCACACTGAGTCAGACTCAGCTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066387.6
CDS CCA 90 bp GGGCCACATCCCGTGGGCTCTGTCCCACAGAGCGGAAGAGCTCCCTaGAGGCTGGGAGGTACAAGTCCCGGAAGTAGCCCAGGGTGTCAG +
Preference number: 5 (lower is better)
Translates to: GPHPVGSVPQSGRAP*RLGGTSPGSSPGCQ
Trigger: CTGACACCCTGGGCTACTTCCGGGACTTGTACCTCCCAGCCTCCAGGGAGCTCTTCCGCTCTGTGGGACAGAGCCCACGGGATGTGGCCC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066387.6
CDS CCA 90 bp TCTTCCCCAGGTCCCTCATGGTGGCCACCACCTGGTAACGCTGCCTaGGGTCATGAGCCAGCTGAAGCGCTAGTTCAAGGCCGATCCCCG +
Preference number: 5 (lower is better)
Translates to: SSPGPSWWPPPGNAA*GHEPAEALVQGRSP
Trigger: CGGGGATCGGCCTTGAACTAGCGCTTCAGCTGGCTCATGACCCCAGGCAGCGTTACCAGGTGGTGGCCACCATGAGGGACCTGGGGAAGA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000066387.6
CDS CCA 90 bp CTCCAGCAGCTGCCTCCAATGGCTCCTTCTTCCCCAGGTCCCTCATaGTGGCCACCACCTGGTAACGCTGCCTGGGGTCATGAGCCAGCT +
Preference number: 5 (lower is better)
Translates to: LQQLPPMAPSSPGPS*WPPPGNAAWGHEPA
Trigger: AGCTGGCTCATGACCCCAGGCAGCGTTACCAGGTGGTGGCCACCATGAGGGACCTGGGGAAGAAGGAGCCATTGGAGGCAGCTGCTGGAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000066387.6
CDS CCA 90 bp CAGCAGCTGCCTCCAATGGCTCCTTCTTCCCCAGGTCCCTCATGGTaGCCACCACCTGGTAACGCTGCCTGGGGTCATGAGCCAGCTGAA +
Preference number: 5 (lower is better)
Translates to: QQLPPMAPSSPGPSW*PPPGNAAWGHEPAE
Trigger: TTCAGCTGGCTCATGACCCCAGGCAGCGTTACCAGGTGGTGGCCACCATGAGGGACCTGGGGAAGAAGGAGCCATTGGAGGCAGCTGCTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000066387.6
CDS GCA 90 bp CAGCTGGACCACGCTGAGGGTCTTTCCAAGAGCTTCTCCAGCAGCTaGCTCCAATGGCTCCTTCTTCCCCAGGTCCCTCATGGTGGCCAC +
Preference number: 5 (lower is better)
Translates to: QLDHAEGLSKSFSSS*LQWLLLPQVPHGGH
Trigger: GTGGCCACCATGAGGGACCTGGGGAAGAAGGAGCCATTGGAGGCAGCTGCTGGAGAAGCTCTTGGAAAGACCCTCAGCGTGGTCCAGCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066387.6
CDS CCA 90 bp AAGCGCTGTCAGTGGGAGGTAGCGAGTGTTGGTCTGTCTGCGGAGTaGGGGTCTGGTGGTACCGATGACCTTGGCAATGACCTGGGCCAC +
Preference number: 5 (lower is better)
Translates to: KRCQWEVASVGLSAE*GSGGTDDLGNDLGH
Trigger: GTGGCCCAGGTCATTGCCAAGGTCATCGGTACCACCAGACCCCCACTCCGCAGACAGACCAACACTCGCTACCTCCCACTGACAGCGCTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066387.6
CDS TCA 90 bp GGGAGGCAGCCACAGGCCAGGCATCGGAGACCAAGGTTGAGGAGGTaGGGCCAGCGAAAAAGGAGCCTGTGGGCAGTTTTCACATACAGG +
Preference number: 5 (lower is better)
Translates to: GRQPQARHRRPRLRR*GQRKRSLWAVFTYR
Trigger: CCTGTATGTGAAAACTGCCCACAGGCTCCTTTTTCGCTGGCCTCACCTCCTCAACCTTGGTCTCCGATGCCTGGCCTGTGGCTGCCTCCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000066387.6
CDS CCA 90 bp CACATACAGGCTTCCAGAGGGGTCCATGGCCTTAAGCGCTGTCAGTaGGAGGTAGCGAGTGTTGGTCTGTCTGCGGAGTGGGGGTCTGGT +
Preference number: 5 (lower is better)
Translates to: HIQASRGVHGLKRCQ*EVASVGLSAEWGSG
Trigger: ACCAGACCCCCACTCCGCAGACAGACCAACACTCGCTACCTCCCACTGACAGCGCTTAAGGCCATGGACCCCTCTGGAAGCCTGTATGTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000066387.6
CDS-3UTR CAA 90 bp GTACTGACTGTCTCTGGGCAGAGCCCTGCTGTTCCAGGTGGAAGGGTGGGACAGCCTGGAAGCACAGCTTaGACCAGACGGACAGCTCCA +
Preference number: 5 (lower is better)
Translates to: VLTVSGQSPAVPGGRVGQPGSTA*TRRTAP
Trigger: TGGAGCTGTCCGTCTGGTCAAAGCTGTGCTTCCAGG...CTGTCCCACCCTTCCACCTGGAACAGCAGGGCTCTGCCCAGAGACAGTCAGTAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066387.6
CDS TCA 90 bp CCCAGGGTGTCAGGGTCCGTGTCTGGGAACTCCGCCTTGGAAACCTaGGCCAGAAGTTTTCCTTCAAAGTCAGTGGTGACTGGGCCTGGC +
Preference number: 5 (lower is better)
Translates to: PRVSGSVSGNSALET*ARSFPSKSVVTGPG
Trigger: GCCAGGCCCAGTCACCACTGACTTTGAAGGAAAACTTCTGGCTCAGGTTTCCAAGGCGGAGTTCCCAGACACGGACCCTGACACCCTGGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066387.6
CDS-3UTR CAA 90 bp TCCTGCCTGAGCTGGGGACGACTGGACTGCAGCAATGCAGAACCAAGTGTGGGCGTCACTGATTCATCATaGCACACGTCCAGCTGGACC +
Preference number: 5 (lower is better)
Translates to: SCLSWGRLDCSNAEPSVGVTDSS*HTSSWT
Trigger: GGTCCAGCTGGACGTGTGCAATGATGAATCAGTGAC...GCCCACACTTGGTTCTGCATTGCTGCAGTCCAGTCGTCCCCAGCTCAGGCAGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066387.6
CDS CCA 90 bp TGGCTGAGACAGTCAGTCACTGATTCATCATTGCACACGTCCAGCTaGACCACGCTGAGGGTCTTTCCAAGAGCTTCTCCAGCAGCTGCC +
Preference number: 5 (lower is better)
Translates to: WLRQSVTDSSLHTSS*TTLRVFPRASPAAA
Trigger: GGCAGCTGCTGGAGAAGCTCTTGGAAAGACCCTCAGCGTGGTCCAGCTGGACGTGTGCAATGATGAATCAGTGACTGACTGTCTCAGCCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066387.6
CDS CCA 90 bp GAGGTACAAGTCCCGGAAGTAGCCCAGGGTGTCAGGGTCCGTGTCTaGGAACTCCGCCTTGGAAACCTGAGCCAGAAGTTTTCCTTCAAA +
Preference number: 5 (lower is better)
Translates to: EVQVPEVAQGVRVRV*ELRLGNLSQKFSFK
Trigger: TTTGAAGGAAAACTTCTGGCTCAGGTTTCCAAGGCGGAGTTCCCAGACACGGACCCTGACACCCTGGGCTACTTCCGGGACTTGTACCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066387.6
CDS TCA 90 bp CACATCCACTTGTCCTCCCTCGATGTGGCTGAGACAGTCAGTCACTaGTTCATCATTGCACACGTCCAGCTGGACCACGCTGAGGGTCTT +
Preference number: 5 (lower is better)
Translates to: HIHLSSLDVAETVSH*FIIAHVQLDHAEGL
Trigger: AAGACCCTCAGCGTGGTCCAGCTGGACGTGTGCAATGATGAATCAGTGACTGACTGTCTCAGCCACATCGAGGGAGGACAAGTGGATGTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066387.6
CDS-3UTR CAA 90 bp GTCAGGTCAGCAATAACATCCAGCCAGTGTCTAACACCAGCTTCCCCTGGCTGTAGGCCTACTCCTGCATaGTTCACTAGCACATCCACT +
Preference number: 5 (lower is better)
Translates to: VRSAITSSQCLTPASPGCRPTPA*FTSTST
Trigger: AGTGGATGTGCTAGTGAACAATGCAGGAGTAGGCCT...ACAGCCAGGGGAAGCTGGTGTTAGACACTGGCTGGATGTTATTGCTGACCTGAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066387.6
CDS TCA 90 bp CTGCATTGTTCACTAGCACATCCACTTGTCCTCCCTCGATGTGGCTaGGACAGTCAGTCACTGATTCATCATTGCACACGTCCAGCTGGA +
Preference number: 5 (lower is better)
Translates to: LHCSLAHPLVLPRCG*DSQSLIHHCTRPAG
Trigger: TCCAGCTGGACGTGTGCAATGATGAATCAGTGACTGACTGTCTCAGCCACATCGAGGGAGGACAAGTGGATGTGCTAGTGAACAATGCAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066387.6
CDS CCA 90 bp ACTCCTGCATTGTTCACTAGCACATCCACTTGTCCTCCCTCGATGTaGCTGAGACAGTCAGTCACTGATTCATCATTGCACACGTCCAGC +
Preference number: 5 (lower is better)
Translates to: TPALFTSTSTCPPSM*LRQSVTDSSLHTSS
Trigger: GCTGGACGTGTGCAATGATGAATCAGTGACTGACTGTCTCAGCCACATCGAGGGAGGACAAGTGGATGTGCTAGTGAACAATGCAGGAGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066387.6
CDS-3UTR CAA 90 bp CAGTGTCTAACACCAGCTTCCCCTGGCTGTGTTTGTTTGTATAGTTACCACTCTGATGAAGATATTGAATaGTCGCAGCTGGATAGCGAG +
Preference number: 5 (lower is better)
Translates to: QCLTPASPGCVCLYSYHSDEDIE*SQLDSE
Trigger: CTCGCTATCCAGCTGCGACAATTCAATATCTTCATC...AGAGTGGTAACTATACAAACAAACACAGCCAGGGGAAGCTGGTGTTAGACACTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066387.6
CDS CCA 72 bp CCCGTGGGCTCTGTCCCACAGAGCGGAAGAGCTCCCTaGAGGCTGGGAGGTACAAGTCCCGGAAGTAGCCCA +
Preference number: 6 (lower is better)
Translates to: PVGSVPQSGRAP*RLGGTSPGSSP
Trigger: TGGGCTACTTCCGGGACTTGTACCTCCCAGCCTCCAGGGAGCTCTTCCGCTCTGTGGGACAGAGCCCACGGG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066387.6
CDS TCA 72 bp GGAGGCAGCCACAGGCCAGGCATCGGAGACCAAGGTTaGGGAGGTGAGGCCAGCGAAAAAGGAGCCTGTGGG +
Preference number: 6 (lower is better)
Translates to: GGSHRPGIGDQG*GGEASEKGACG
Trigger: CCCACAGGCTCCTTTTTCGCTGGCCTCACCTCCTCAACCTTGGTCTCCGATGCCTGGCCTGTGGCTGCCTCC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000066387.6
CDS CAA 90 bp GTGTTGGTCTGTCTGCGGAGTGGGGGTCTGGTGGTACCGATGACCTaGGCAATGACCTGGGCCACATCCCGTGGGCTCTGTCCCACAGAG +
Preference number: 6 (lower is better)
Translates to: VLVCLRSGGLVVPMT*AMTWATSRGLCPTE
Trigger: CTCTGTGGGACAGAGCCCACGGGATGTGGCCCAGGTCATTGCCAAGGTCATCGGTACCACCAGACCCCCACTCCGCAGACAGACCAACAC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000066387.6
CDS CCA 72 bp GGTCCCTCATGGTGGCCACCACCTGGTAACGCTGCCTaGGGTCATGAGCCAGCTGAAGCGCTAGTTCAAGGC +
Preference number: 6 (lower is better)
Translates to: GPSWWPPPGNAA*GHEPAEALVQG
Trigger: GCCTTGAACTAGCGCTTCAGCTGGCTCATGACCCCAGGCAGCGTTACCAGGTGGTGGCCACCATGAGGGACC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066387.6
CDS CCA 72 bp ACCGATGACCTTGGCAATGACCTGGGCCACATCCCGTaGGCTCTGTCCCACAGAGCGGAAGAGCTCCCTGGA +
Preference number: 6 (lower is better)
Translates to: TDDLGNDLGHIP*ALSHRAEELPG
Trigger: TCCAGGGAGCTCTTCCGCTCTGTGGGACAGAGCCCACGGGATGTGGCCCAGGTCATTGCCAAGGTCATCGGT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066387.6
CDS CAA 72 bp TGTCTGCGGAGTGGGGGTCTGGTGGTACCGATGACCTaGGCAATGACCTGGGCCACATCCCGTGGGCTCTGT +
Preference number: 6 (lower is better)
Translates to: CLRSGGLVVPMT*AMTWATSRGLC
Trigger: ACAGAGCCCACGGGATGTGGCCCAGGTCATTGCCAAGGTCATCGGTACCACCAGACCCCCACTCCGCAGACA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000066387.6
CDS CCA 72 bp GCTTCCAGAGGGGTCCATGGCCTTAAGCGCTGTCAGTaGGAGGTAGCGAGTGTTGGTCTGTCTGCGGAGTGG +
Preference number: 6 (lower is better)
Translates to: ASRGVHGLKRCQ*EVASVGLSAEW
Trigger: CCACTCCGCAGACAGACCAACACTCGCTACCTCCCACTGACAGCGCTTAAGGCCATGGACCCCTCTGGAAGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066387.6
CDS CCA 72 bp GTCCCGGAAGTAGCCCAGGGTGTCAGGGTCCGTGTCTaGGAACTCCGCCTTGGAAACCTGAGCCAGAAGTTT +
Preference number: 6 (lower is better)
Translates to: VPEVAQGVRVRV*ELRLGNLSQKF
Trigger: AAACTTCTGGCTCAGGTTTCCAAGGCGGAGTTCCCAGACACGGACCCTGACACCCTGGGCTACTTCCGGGAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066387.6
CDS CCA 72 bp CAGTGGGAGGTAGCGAGTGTTGGTCTGTCTGCGGAGTaGGGGTCTGGTGGTACCGATGACCTTGGCAATGAC +
Preference number: 6 (lower is better)
Translates to: QWEVASVGLSAE*GSGGTDDLGND
Trigger: GTCATTGCCAAGGTCATCGGTACCACCAGACCCCCACTCCGCAGACAGACCAACACTCGCTACCTCCCACTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066387.6
CDS CAA 90 bp GCTAGGCTGAGTCCCTCCAGGGGCCCCACAAGGCCTACTCCTGCATaGTTCACTAGCACATCCACTTGTCCTCCCTCGATGTGGCTGAGA +
Preference number: 6 (lower is better)
Translates to: ARLSPSRGPTRPTPA*FTSTSTCPPSMWLR
Trigger: TCTCAGCCACATCGAGGGAGGACAAGTGGATGTGCTAGTGAACAATGCAGGAGTAGGCCTTGTGGGGCCCCTGGAGGGACTCAGCCTAGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000066387.6
CDS GCA 72 bp CACGCTGAGGGTCTTTCCAAGAGCTTCTCCAGCAGCTaGCTCCAATGGCTCCTTCTTCCCCAGGTCCCTCAT +
Preference number: 6 (lower is better)
Translates to: HAEGLSKSFSSS*LQWLLLPQVPH
Trigger: ATGAGGGACCTGGGGAAGAAGGAGCCATTGGAGGCAGCTGCTGGAGAAGCTCTTGGAAAGACCCTCAGCGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066387.6
CDS CCA 72 bp CACCACGATGTGGCCCTGACGCCTCCTCTTCATGCCTaGAAGCACAGCTTTGACCAGACGGACAGCTCCAAA +
Preference number: 6 (lower is better)
Translates to: HHDVALTPPLHA*KHSFDQTDSSK
Trigger: TTTGGAGCTGTCCGTCTGGTCAAAGCTGTGCTTCCAGGCATGAAGAGGAGGCGTCAGGGCCACATCGTGGTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066387.6
CDS CCA 72 bp TCAGTTCTGCTCTGTTTGTCTAGGCCACACACGTGTTaGGAGGCAGCCACAGGCCAGGCATCGGAGACCAAG +
Preference number: 6 (lower is better)
Translates to: SVLLCLSRPHTC*EAATGQASETK
Trigger: CTTGGTCTCCGATGCCTGGCCTGTGGCTGCCTCCCAACACGTGTGTGGCCTAGACAAACAGAGCAGAACTGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066387.6
CDS CAA 72 bp AGTCCCTCCAGGGGCCCCACAAGGCCTACTCCTGCATaGTTCACTAGCACATCCACTTGTCCTCCCTCGATG +
Preference number: 6 (lower is better)
Translates to: SPSRGPTRPTPA*FTSTSTCPPSM
Trigger: CATCGAGGGAGGACAAGTGGATGTGCTAGTGAACAATGCAGGAGTAGGCCTTGTGGGGCCCCTGGAGGGACT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000066387.6
CDS TCA 72 bp CTGATTCATCATTGCACACGTCCAGCTGGACCACGCTaGGGGTCTTTCCAAGAGCTTCTCCAGCAGCTGCCT +
Preference number: 6 (lower is better)
Translates to: LIHHCTRPAGPR*GSFQELLQQLP
Trigger: AGGCAGCTGCTGGAGAAGCTCTTGGAAAGACCCTCAGCGTGGTCCAGCTGGACGTGTGCAATGATGAATCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066387.6
CDS CCA 72 bp CCAGGGTGTCAGGGTCCGTGTCTGGGAACTCCGCCTTaGAAACCTGAGCCAGAAGTTTTCCTTCAAAGTCAG +
Preference number: 6 (lower is better)
Translates to: PGCQGPCLGTPP*KPEPEVFLQSQ
Trigger: CTGACTTTGAAGGAAAACTTCTGGCTCAGGTTTCCAAGGCGGAGTTCCCAGACACGGACCCTGACACCCTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066387.6
CDS CAA 90 bp TGTCCTCCCTCGATGTGGCTGAGACAGTCAGTCACTGATTCATCATaGCACACGTCCAGCTGGACCACGCTGAGGGTCTTTCCAAGAGCT +
Preference number: 6 (lower is better)
Translates to: CPPSMWLRQSVTDSS*HTSSWTTLRVFPRA
Trigger: AGCTCTTGGAAAGACCCTCAGCGTGGTCCAGCTGGACGTGTGCAATGATGAATCAGTGACTGACTGTCTCAGCCACATCGAGGGAGGACA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066387.6
CDS TCA 72 bp TTGTCCTCCCTCGATGTGGCTGAGACAGTCAGTCACTaGTTCATCATTGCACACGTCCAGCTGGACCACGCT +
Preference number: 6 (lower is better)
Translates to: LSSLDVAETVSH*FIIAHVQLDHA
Trigger: AGCGTGGTCCAGCTGGACGTGTGCAATGATGAATCAGTGACTGACTGTCTCAGCCACATCGAGGGAGGACAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066387.6
CDS TCA 72 bp TCAGGGTCCGTGTCTGGGAACTCCGCCTTGGAAACCTaGGCCAGAAGTTTTCCTTCAAAGTCAGTGGTGACT +
Preference number: 6 (lower is better)
Translates to: SGSVSGNSALET*ARSFPSKSVVT
Trigger: AGTCACCACTGACTTTGAAGGAAAACTTCTGGCTCAGGTTTCCAAGGCGGAGTTCCCAGACACGGACCCTGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066387.6
CDS CCA 72 bp CAGTCAGTCACTGATTCATCATTGCACACGTCCAGCTaGACCACGCTGAGGGTCTTTCCAAGAGCTTCTCCA +
Preference number: 6 (lower is better)
Translates to: QSVTDSSLHTSS*TTLRVFPRASP
Trigger: TGGAGAAGCTCTTGGAAAGACCCTCAGCGTGGTCCAGCTGGACGTGTGCAATGATGAATCAGTGACTGACTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066387.6
CDS CAA 72 bp TCGATGTGGCTGAGACAGTCAGTCACTGATTCATCATaGCACACGTCCAGCTGGACCACGCTGAGGGTCTTT +
Preference number: 6 (lower is better)
Translates to: SMWLRQSVTDSS*HTSSWTTLRVF
Trigger: AAAGACCCTCAGCGTGGTCCAGCTGGACGTGTGCAATGATGAATCAGTGACTGACTGTCTCAGCCACATCGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066387.6
CDS TCA 72 bp TCACTAGCACATCCACTTGTCCTCCCTCGATGTGGCTaGGACAGTCAGTCACTGATTCATCATTGCACACGT +
Preference number: 6 (lower is better)
Translates to: SLAHPLVLPRCG*DSQSLIHHCTR
Trigger: ACGTGTGCAATGATGAATCAGTGACTGACTGTCTCAGCCACATCGAGGGAGGACAAGTGGATGTGCTAGTGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066387.6
CDS CAA 72 bp GTGACTGGGCCTGGCTCCACCATTGAGATGAAGATATaGAATTGTCGCAGCTGGATAGCGAGACTCTCAAAG +
Preference number: 6 (lower is better)
Translates to: VTGPGSTIEMKI*NCRSWIARLSK
Trigger: CTTTGAGAGTCTCGCTATCCAGCTGCGACAATTCAATATCTTCATCTCAATGGTGGAGCCAGGCCCAGTCAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066387.6
CDS CAA 90 bp AAGTCAGTGGTGACTGGGCCTGGCTCCACCATTGAGATGAAGATATaGAATTGTCGCAGCTGGATAGCGAGACTCTCAAAGAACCCTTCT +
Preference number: 6 (lower is better)
Translates to: KSVVTGPGSTIEMKI*NCRSWIARLSKNPS
Trigger: AGAAGGGTTCTTTGAGAGTCTCGCTATCCAGCTGCGACAATTCAATATCTTCATCTCAATGGTGGAGCCAGGCCCAGTCACCACTGACTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066387.6
CDS CCA 72 bp TTGTTCACTAGCACATCCACTTGTCCTCCCTCGATGTaGCTGAGACAGTCAGTCACTGATTCATCATTGCAC +
Preference number: 6 (lower is better)
Translates to: LFTSTSTCPPSM*LRQSVTDSSLH
Trigger: GTGCAATGATGAATCAGTGACTGACTGTCTCAGCCACATCGAGGGAGGACAAGTGGATGTGCTAGTGAACAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066387.6
CDS CCA 72 bp TCCACCATTGAGATGAAGATATTGAATTGTCGCAGCTaGATAGCGAGACTCTCAAAGAACCCTTCTAGGGCA +
Preference number: 6 (lower is better)
Translates to: STIEMKILNCRS*IARLSKNPSRA
Trigger: TGCCCTAGAAGGGTTCTTTGAGAGTCTCGCTATCCAGCTGCGACAATTCAATATCTTCATCTCAATGGTGGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066387.6