Pregenerated sensors for RDH7 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000040134Ensembl transcript IDs: ENSMUST00000047199.5
Found 31 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GTTTACAATCTCTGCAGTCCTGTGGATTCTCACAATAGGCCAAGATaGAGCCCCAAGAAGCTAAGTTCACAGGATATTGCCAGCCCCTTT | + |
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Preference number: 1 (lower is better) Translates to: VYNLCSPVDSHNRPR*SPKKLSSQDIASPF Trigger: AAAGGGGCTGGCAATATCCTGTGAACTTAGCTTCTTGGGGCTTCATCTTGGCCTATTGTGAGAATCCACAGGACTGCAGAGATTGTAAAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000047199.5 |
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| 3UTR TCA 90 bp | CTTGGCAGAACTTTACTGCCTCTTTCCCCTGAACTTTACTGGTTCTaGGTAGTATGGAAGCTGAATTGTTTTAATGAGTCTCAAGAACCA | + |
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Preference number: 1 (lower is better) Translates to: LGRTLLPLSPELYWF*VVWKLNCFNESQEP Trigger: TGGTTCTTGAGACTCATTAAAACAATTCAGCTTCCATACTACTCAGAACCAGTAAAGTTCAGGGGAAAGAGGCAGTAAAGTTCTGCCAAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000047199.5 |
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| 3UTR-3UTR TCA 90 bp | TTAGGATGTGGAGTGCGGGTGGGGGCCCTCCCTCCTGACACCATGGAAAAAGGTGGCCCATGGACATCATaGGGAAGGGCCAGAGGCAAA | + |
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Preference number: 2 (lower is better) Translates to: LGCGVRVGALPPDTMEKGGPWTS*GRARGK Trigger: TTTGCCTCTGGCCCTTCCTCATGATGTCCATGGGCC...ACCTTTTTCCATGGTGTCAGGAGGGAGGGCCCCCACCCGCACTCCACATCCTAA 59% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000047199.5 |
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| 3UTR-3UTR CCA 90 bp | TTAGGATGTGGAGTGCGGGTGGGGGCCCTCCCTCCTGACACCATGGAAAAAGGTATCTCTGCAGTCCTGTaGATTCTCACAATAGGCCAA | + |
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Preference number: 2 (lower is better) Translates to: LGCGVRVGALPPDTMEKGISAVL*ILTIGQ Trigger: TTGGCCTATTGTGAGAATCCACAGGACTGCAGAGAT...ACCTTTTTCCATGGTGTCAGGAGGGAGGGCCCCCACCCGCACTCCACATCCTAA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000047199.5 |
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| 3UTR-3UTR GCA 90 bp | TCCCCCTTGGCAGAACTTTACTGCCTCTTTCCCCTGAACTTTACTGGTTCTGAGGAACCACATGCCCTGTaGCATTATCTCCCTCCACCC | + |
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Preference number: 2 (lower is better) Translates to: SPLAELYCLFPLNFTGSEEPHAL*HYLPPP Trigger: GGGTGGAGGGAGATAATGGCACAGGGCATGTGGTTC...CTCAGAACCAGTAAAGTTCAGGGGAAAGAGGCAGTAAAGTTCTGCCAAGGGGGA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000047199.5 |
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| 3UTR-3UTR CCA 90 bp | AAGTGGATTCTTTCGATCTTCCATGATGGCCAGGCCCATGGACATCATGAGGAATGTATCACTCCCCCTTaGCAGAACTTTACTGCCTCT | + |
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Preference number: 2 (lower is better) Translates to: KWILSIFHDGQAHGHHEECITPP*QNFTAS Trigger: AGAGGCAGTAAAGTTCTGCCAAGGGGGAGTGATACA...TTCCTCATGATGTCCATGGGCCTGGCCATCATGGAAGATCGAAAGAATCCACTT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000047199.5 |
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| 3UTR-3UTR GCA 90 bp | AAGGTGATTGTGAAGTGGATTCTTTCGATCTTCCATGATGGCCAGGCCCATGGAGGTGTTTACAATCTCTaGAGTCCTGTGGATTCTCAC | + |
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Preference number: 2 (lower is better) Translates to: KVIVKWILSIFHDGQAHGGVYNL*SPVDSH Trigger: GTGAGAATCCACAGGACTGCAGAGATTGTAAACACC...TCCATGGGCCTGGCCATCATGGAAGATCGAAAGAATCCACTTCACAATCACCTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047199.5 |
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| 3UTR-3UTR GCA 90 bp | GTTTATCTTAGCAAGATTCTATCCCACCAGCAAAACCACCTCCTAAACGGCATTGTCTCAAGAACCACATaGCCTGTGCCATTATCTCCC | + |
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Preference number: 2 (lower is better) Translates to: VYLSKILSHQQNHLLNGIVSRTT*PVPLSP Trigger: GGGAGATAATGGCACAGGGCATGTGGTTCTTGAGAC...AATGCCGTTTAGGAGGTGGTTTTGCTGGTGGGATAGAATCTTGCTAAGATAAAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047199.5 |
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| 3UTR CCA 72 bp | GTGGAGTGCGGGTGGGGGCCCTCCCTCCTGACACCATaGAAAAAGGTGATTGTGAAGTGGATTCTTTCGATC | + |
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Preference number: 3 (lower is better) Translates to: VECGWGPSLLTP*KKVIVKWILSI Trigger: GATCGAAAGAATCCACTTCACAATCACCTTTTTCCATGGTGTCAGGAGGGAGGGCCCCCACCCGCACTCCAC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000047199.5 |
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| 3UTR-3UTR CAA 90 bp | GAGGCAAAGCTCATCCTAGGTGTTTACAATCTCTGCAGTCCTGTGGATTCTCACTTGTATCACTCCCCCTaGGCAGAACTTTACTGCCTC | + |
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Preference number: 3 (lower is better) Translates to: EAKLILGVYNLCSPVDSHLYHSP*AELYCL Trigger: GAGGCAGTAAAGTTCTGCCAAGGGGGAGTGATACAA...GTGAGAATCCACAGGACTGCAGAGATTGTAAACACCTAGGATGAGCTTTGCCTC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000047199.5 |
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| 3UTR TCA 72 bp | CTCTGCAGTCCTGTGGATTCTCACAATAGGCCAAGATaGAGCCCCAAGAAGCTAAGTTCACAGGATATTGCC | + |
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Preference number: 3 (lower is better) Translates to: LCSPVDSHNRPR*SPKKLSSQDIA Trigger: GGCAATATCCTGTGAACTTAGCTTCTTGGGGCTTCATCTTGGCCTATTGTGAGAATCCACAGGACTGCAGAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047199.5 |
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| 3UTR CCA 72 bp | TCCCTCCTGACACCATGGAAAAAGGTGATTGTGAAGTaGATTCTTTCGATCTTCCATGATGGCCAGGCCCAT | + |
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Preference number: 3 (lower is better) Translates to: SLLTPWKKVIVK*ILSIFHDGQAH Trigger: ATGGGCCTGGCCATCATGGAAGATCGAAAGAATCCACTTCACAATCACCTTTTTCCATGGTGTCAGGAGGGA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000047199.5 |
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| 3UTR TCA 72 bp | ACTCCCCCTTGGCAGAACTTTACTGCCTCTTTCCCCTaGACTTTACTGGTTCTGAGTAGTATGGAAGCTGAA | + |
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Preference number: 3 (lower is better) Translates to: TPPWQNFTASFP*TLLVLSSMEAE Trigger: TTCAGCTTCCATACTACTCAGAACCAGTAAAGTTCAGGGGAAAGAGGCAGTAAAGTTCTGCCAAGGGGGAGT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000047199.5 |
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| 3UTR TCA 72 bp | ACTTTACTGCCTCTTTCCCCTGAACTTTACTGGTTCTaGGTAGTATGGAAGCTGAATTGTTTTAATGAGTCT | + |
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Preference number: 3 (lower is better) Translates to: TLLPLSPELYWF*VVWKLNCFNES Trigger: AGACTCATTAAAACAATTCAGCTTCCATACTACTCAGAACCAGTAAAGTTCAGGGGAAAGAGGCAGTAAAGT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000047199.5 |
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| CDS-3UTR CCA 90 bp | ACGGCATTAGGATGTGGAGTGCGGGTGGGGGCCCTCCCTCCTGACACCATGGAAACCTCCGAGGATGTCTaGTCCCACAGCTTCTCTATG | + |
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Preference number: 4 (lower is better) Translates to: TALGCGVRVGALPPDTMETSEDV*SHSFSM Trigger: CATAGAGAAGCTGTGGGACCAGACATCCTCGGAGGT...TTCCATGGTGTCAGGAGGGAGGGCCCCCACCCGCACTCCACATCCTAATGCCGT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000047199.5 |
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| CDS-3UTR CCA 90 bp | ACGGCATTAGGATGTGGAGTGCGGGTGGGGGCCCTCCCTCCTGACACCATGGAAAGCTCCAGTACAACATaGCATCTACCAGGAAGGTGG | + |
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Preference number: 4 (lower is better) Translates to: TALGCGVRVGALPPDTMESSSTT*HLPGRW Trigger: CCACCTTCCTGGTAGATGCCATGTTGTACTGGAGCT...TTCCATGGTGTCAGGAGGGAGGGCCCCCACCCGCACTCCACATCCTAATGCCGT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000047199.5 |
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| CDS-3UTR TCA 90 bp | TCACTCCCCCTTGGCAGAACTTTACTGCCTCTTTCCCCTGAACTTTACTGGTTCTGGAGCTGGAGATGTTaGCCACACGGCCCCTCGCCT | + |
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Preference number: 4 (lower is better) Translates to: SLPLGRTLLPLSPELYWFWSWRC*PHGPSP Trigger: AGGCGAGGGGCCGTGTGGTCAACATCTCCAGCTCCA...GAACCAGTAAAGTTCAGGGGAAAGAGGCAGTAAAGTTCTGCCAAGGGGGAGTGA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000047199.5 |
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| CDS-3UTR GCA 90 bp | TTAGGATGTGGAGTGCGGGTGGGGGCCCTCCCTCCTGACACCATGGAAAAAGGTCACCATACTTGGAGATaGAGTAACCACCACCACACA | + |
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Preference number: 4 (lower is better) Translates to: LGCGVRVGALPPDTMEKGHHTWR*SNHHHT Trigger: TGTGTGGTGGTGGTTACTGCATCTCCAAGTATGGTG...ACCTTTTTCCATGGTGTCAGGAGGGAGGGCCCCCACCCGCACTCCACATCCTAA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000047199.5 |
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| CDS-3UTR GCA 90 bp | TTCTTTCGATCTTCCATGATGGCCAGGCCCATGGACATCATGAGGAAGGGCCAGCAGGCAGTCAGAGCGTaGTCCATGCAGTCAGTTACC | + |
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Preference number: 4 (lower is better) Translates to: FFRSSMMARPMDIMRKGQQAVRA*SMQSVT Trigger: GGTAACTGACTGCATGGAGCACGCTCTGACTGCCTG...CTGGCCCTTCCTCATGATGTCCATGGGCCTGGCCATCATGGAAGATCGAAAGAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047199.5 |
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| CDS-3UTR TCA 90 bp | TGGATTCTTTCGATCTTCCATGATGGCCAGGCCCATGGACATCATGAGGAAGGGTGTCATAGACCTCCTTaGCCTCCGAGGATGTCTGGT | + |
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Preference number: 4 (lower is better) Translates to: WILSIFHDGQAHGHHEEGCHRPP*PPRMSG Trigger: ACCAGACATCCTCGGAGGTCAAGGAGGTCTATGACA...CCCTTCCTCATGATGTCCATGGGCCTGGCCATCATGGAAGATCGAAAGAATCCA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047199.5 |
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| CDS-3UTR GCA 90 bp | AAGTGGATTCTTTCGATCTTCCATGATGGCCAGGCCCATGGACATCATGAGGAAAGATGGCTCACCACCTaGCTCTCCCTGAAGAAGCGC | + |
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Preference number: 4 (lower is better) Translates to: KWILSIFHDGQAHGHHEERWLTT*LSLKKR Trigger: GCGCTTCTTCAGGGAGAGGCAGGTGGTGAGCCATCT...TTCCTCATGATGTCCATGGGCCTGGCCATCATGGAAGATCGAAAGAATCCACTT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047199.5 |
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| CDS-3UTR GCA 90 bp | TGTTTTAATGAGTCTCAAGAACCACATGCCCTGTGCCATTATCTCCCTCCACCCCAGCTAGCACCCTCATaGCTCTCCTGTCCAGCTGTC | + |
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Preference number: 4 (lower is better) Translates to: CFNESQEPHALCHYLPPPQLAPS*LSCPAV Trigger: GACAGCTGGACAGGAGAGGCATGAGGGTGCTAGCTG...GGGTGGAGGGAGATAATGGCACAGGGCATGTGGTTCTTGAGACTCATTAAAACA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000047199.5 |
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| CDS-3UTR GCA 90 bp | TCACTCCCCCTTGGCAGAACTTTACTGCCTCTTTCCCCTGAACTTTACTGGTTCGTCTTGTTCCTCAGCTaGTCAGCTCCCTTCTCCGTC | + |
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Preference number: 4 (lower is better) Translates to: SLPLGRTLLPLSPELYWFVLFLS*SAPFSV Trigger: GACGGAGAAGGGAGCTGAGCAGCTGAGGAACAAGAC...GAACCAGTAAAGTTCAGGGGAAAGAGGCAGTAAAGTTCTGCCAAGGGGGAGTGA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000047199.5 |
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| CDS TCA 90 bp | AACCACCACCACACAAAGACACTCGACCCATGGAGCTGGAGATGTTaGCCACACGGCCCCTCGCCTTCCTCACTAAGGGCAGCATGCTCA | + |
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Preference number: 5 (lower is better) Translates to: NHHHTKTLDPWSWRC*PHGPSPSSLRAACS Trigger: TGAGCATGCTGCCCTTAGTGAGGAAGGCGAGGGGCCGTGTGGTCAACATCTCCAGCTCCATGGGTCGAGTGTCTTTGTGTGGTGGTGGTT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047199.5 |
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| CDS-3UTR CAA 90 bp | AATGAGTCTCAAGAACCACATGCCCTGTGCCATTATCTCCCTCCACCCGCCACAATGGAGCTGGAGATGTaGACCACACGGCCCCTCGCC | + |
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Preference number: 5 (lower is better) Translates to: NESQEPHALCHYLPPPATMELEM*TTRPLA Trigger: GGCGAGGGGCCGTGTGGTCAACATCTCCAGCTCCAT...TGTGGCGGGTGGAGGGAGATAATGGCACAGGGCATGTGGTTCTTGAGACTCATT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047199.5 |
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| CDS-3UTR CAA 90 bp | TGGATTCTTTCGATCTTCCATGATGGCCAGGCCCATGGACATCATGAGGAAGGGAGCCAGCTGAGTATCTaGTGCGAGGGTGACAGGCAG | + |
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Preference number: 5 (lower is better) Translates to: WILSIFHDGQAHGHHEEGSQLSI*CEGDRQ Trigger: CTGCCTGTCACCCTCGCACAAGATACTCAGCTGGCT...CCCTTCCTCATGATGTCCATGGGCCTGGCCATCATGGAAGATCGAAAGAATCCA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047199.5 |
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| CDS-3UTR CAA 90 bp | ATTCTTTCGATCTTCCATGATGGCCAGGCCCATGGACATCATGAGGAAGGGCCATTTTTCAGCCACTCATaGATAGCAAAGACACAGATG | + |
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Preference number: 5 (lower is better) Translates to: ILSIFHDGQAHGHHEEGPFFSHS*IAKTQM Trigger: CATCTGTGTCTTTGCTATCAATGAGTGGCTGAAAAA...TGGCCCTTCCTCATGATGTCCATGGGCCTGGCCATCATGGAAGATCGAAAGAAT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000047199.5 |
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| CDS CAA 72 bp | CCACACAAAGACACTCGACCCATGGAGCTGGAGATGTaGACCACACGGCCCCTCGCCTTCCTCACTAAGGGC | + |
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Preference number: 6 (lower is better) Translates to: PHKDTRPMELEM*TTRPLAFLTKG Trigger: GCCCTTAGTGAGGAAGGCGAGGGGCCGTGTGGTCAACATCTCCAGCTCCATGGGTCGAGTGTCTTTGTGTGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047199.5 |
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| CDS TCA 72 bp | CACACAAAGACACTCGACCCATGGAGCTGGAGATGTTaGCCACACGGCCCCTCGCCTTCCTCACTAAGGGCA | + |
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Preference number: 6 (lower is better) Translates to: HTKTLDPWSWRC*PHGPSPSSLRA Trigger: TGCCCTTAGTGAGGAAGGCGAGGGGCCGTGTGGTCAACATCTCCAGCTCCATGGGTCGAGTGTCTTTGTGTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047199.5 |
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| CDS GCA 72 bp | TTGTGCGAGGGTGACAGGCAGTCAGAGCGTGCTCCATaGAGTCAGTTACCACAGACAGGTCATCTGAGCATG | + |
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Preference number: 6 (lower is better) Translates to: LCEGDRQSERAP*SQLPQTGHLSM Trigger: CATGCTCAGATGACCTGTCTGTGGTAACTGACTGCATGGAGCACGCTCTGACTGCCTGTCACCCTCGCACAA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047199.5 |
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| CDS CCA 72 bp | GGGCTTGGGCAGGCTTTACAGAGCTCCAGTACAACATaGCATCTACCAGGAAGGTGGGCATGTAGCTCAAGG | + |
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Preference number: 6 (lower is better) Translates to: GLGQALQSSSTT*HLPGRWACSSR Trigger: CCTTGAGCTACATGCCCACCTTCCTGGTAGATGCCATGTTGTACTGGAGCTCTGTAAAGCCTGCCCAAGCCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047199.5 |
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