Pregenerated sensors for RDH5 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000025350Ensembl transcript IDs: ENSMUST00000026406.14, ENSMUST00000135161.2, ENSMUST00000137747.2, ENSMUST00000145616.2, ENSMUST00000149961.2
Found 61 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR GCA 90 bp | CAATACATATTTATTGAGAGCCTAATTGGTATCAGAAACCAGGCAGCACTGGGTAGACACAGAAATAGATaGCTTGCTTTTCAAAATCAG | + |
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Preference number: 2 (lower is better) Translates to: QYIFIESLIGIRNQAALGRHRNR*LAFQNQ Trigger: CTGATTTTGAAAAGCAAGGCATCTATTTCTGTGTCT...ACCCAGTGCTGCCTGGTTTCTGATACCAATTAGGCTCTCAATAAATATGTATTG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000026406.14 |
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| 3UTR GCA 72 bp | AGAAACCAGGCAGCACTGGGTAGACACAGAAATAGATaGCTTGCTTTTCAAAATCAGCCTCTTGCTGTAAAG | + |
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Preference number: 3 (lower is better) Translates to: RNQAALGRHRNR*LAFQNQPLAVK Trigger: CTTTACAGCAAGAGGCTGATTTTGAAAAGCAAGGCATCTATTTCTGTGTCTACCCAGTGCTGCCTGGTTTCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000026406.14 |
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| 3UTR-3UTR CAA 90 bp | CAATACATATTTATTGAGAGCCTAATTGGTATCAGAAACCAGGCAGCACTGGGTACAGAAATAGATGCCTaGCTTTTCAAAATCAGCCTC | + |
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Preference number: 3 (lower is better) Translates to: QYIFIESLIGIRNQAALGTEIDA*LFKISL Trigger: GAGGCTGATTTTGAAAAGCAAGGCATCTATTTCTGT...ACCCAGTGCTGCCTGGTTTCTGATACCAATTAGGCTCTCAATAAATATGTATTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000026406.14 |
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| CDS-3UTR GCA 90 bp | AGGCAGCACTGGGTAGACACAGAAATAGATGCCTTGCTTTTCAAAATCAGCCTCACCCGACCCCTGGCCTaGTGTAGCAGGGGCAGCAGG | + |
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Preference number: 4 (lower is better) Translates to: RQHWVDTEIDALLFKISLTRPLA*CSRGSR Trigger: CCTGCTGCCCCTGCTACAGCAGGCCAGGGGTCGGGT...GAGGCTGATTTTGAAAAGCAAGGCATCTATTTCTGTGTCTACCCAGTGCTGCCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000026406.14 |
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| CDS-3UTR TCA 90 bp | ATTGGTATCAGAAACCAGGCAGCACTGGGTAGACACAGAAATAGATGCCTTGCTGGCTCTGCCGGTCTCTaGGCAACCACAGCACTGCCC | + |
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Preference number: 4 (lower is better) Translates to: IGIRNQAALGRHRNRCLAGSAGL*ATTALP Trigger: GGGCAGTGCTGTGGTTGCTCAGAGACCGGCAGAGCC...AGCAAGGCATCTATTTCTGTGTCTACCCAGTGCTGCCTGGTTTCTGATACCAAT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026406.14 |
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| CDS-3UTR GCA 90 bp | ACCAGGCAGCACTGGGTAGACACAGAAATAGATGCCTTGCTTTTCAAAATCAGCCGAGCAGTCAGGGCATaGTCCAGGCAGCTGGTCACC | + |
|
Preference number: 4 (lower is better) Translates to: TRQHWVDTEIDALLFKISRAVRA*SRQLVT Trigger: GGTGACCAGCTGCCTGGAGCATGCCCTGACTGCTCG...GCTGATTTTGAAAAGCAAGGCATCTATTTCTGTGTCTACCCAGTGCTGCCTGGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000026406.14 |
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| CDS-3UTR CCA 90 bp | TTGGTATCAGAAACCAGGCAGCACTGGGTAGACACAGAAATAGATGCCTTGCTTCTTGGCATCCCAGCCTaGGCTGTAGCGTGTTCGGGG | + |
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Preference number: 4 (lower is better) Translates to: LVSETRQHWVDTEIDALLLGIPA*AVACSG Trigger: CCCCGAACACGCTACAGCCCAGGCTGGGATGCCAAG...AAGCAAGGCATCTATTTCTGTGTCTACCCAGTGCTGCCTGGTTTCTGATACCAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026406.14 |
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| CDS-3UTR GCA 90 bp | ATTGGTATCAGAAACCAGGCAGCACTGGGTAGACACAGAAATAGATGCCTTGCTCTGCTGCAGGTCTTCTaGTCCAGAGGGGGTCAGGCA | + |
|
Preference number: 4 (lower is better) Translates to: IGIRNQAALGRHRNRCLALLQVF*SRGGQA Trigger: TGCCTGACCCCCTCTGGAGCAGAAGACCTGCAGCAG...AGCAAGGCATCTATTTCTGTGTCTACCCAGTGCTGCCTGGTTTCTGATACCAAT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000026406.14 |
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| CDS-3UTR CCA 90 bp | GAAACCAGGCAGCACTGGGTAGACACAGAAATAGATGCCTTGCTTTTCAAAATCGCAGCCAGAGCAGCTTaGCATCCCAGCCTGGGCTGT | + |
|
Preference number: 4 (lower is better) Translates to: ETRQHWVDTEIDALLFKIAARAA*HPSLGC Trigger: ACAGCCCAGGCTGGGATGCCAAGCTGCTCTGGCTGC...GATTTTGAAAAGCAAGGCATCTATTTCTGTGTCTACCCAGTGCTGCCTGGTTTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000026406.14 |
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| CDS-3UTR CCA 90 bp | ACCAGGCAGCACTGGGTAGACACAGAAATAGATGCCTTGCTTTTCAAAATCAGCCAGCATCCACCACCCTaGCTGGAAGGTAGGAGGCAG | + |
|
Preference number: 4 (lower is better) Translates to: TRQHWVDTEIDALLFKISQHPPP*LEGRRQ Trigger: CTGCCTCCTACCTTCCAGCCAGGGTGGTGGATGCTG...GCTGATTTTGAAAAGCAAGGCATCTATTTCTGTGTCTACCCAGTGCTGCCTGGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000026406.14 |
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| CDS-3UTR GCA 90 bp | GAAACCAGGCAGCACTGGGTAGACACAGAAATAGATGCCTTGCTTTTCAAAATCGAGCAACCACAGCACTaGCCACAGCAAGGCACCCAG | + |
|
Preference number: 4 (lower is better) Translates to: ETRQHWVDTEIDALLFKIEQPQH*PQQGTQ Trigger: CTGGGTGCCTTGCTGTGGGCAGTGCTGTGGTTGCTC...GATTTTGAAAAGCAAGGCATCTATTTCTGTGTCTACCCAGTGCTGCCTGGTTTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000026406.14 |
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| CDS-3UTR GCA 90 bp | ATTGGTATCAGAAACCAGGCAGCACTGGGTAGACACAGAAATAGATGCCTTGCTCTGGTCAAGTTGCAGTaGCAGAAGGCGCCCAAAGCC | + |
|
Preference number: 4 (lower is better) Translates to: IGIRNQAALGRHRNRCLALVKLQ*QKAPKA Trigger: GGCTTTGGGCGCCTTCTGGCACTGCAACTTGACCAG...AGCAAGGCATCTATTTCTGTGTCTACCCAGTGCTGCCTGGTTTCTGATACCAAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026406.14 |
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| CDS-3UTR GCA 90 bp | GTATCAGAAACCAGGCAGCACTGGGTAGACACAGAAATAGATGCCTTGCTTTTCCCCTTCTGGTCAAGTTaGAGTGCCAGAAGGCGCCCA | + |
|
Preference number: 4 (lower is better) Translates to: VSETRQHWVDTEIDALLFPFWSS*SARRRP Trigger: TGGGCGCCTTCTGGCACTGCAACTTGACCAGAAGGG...GAAAAGCAAGGCATCTATTTCTGTGTCTACCCAGTGCTGCCTGGTTTCTGATAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000026406.14 |
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| CDS-3UTR CCA 90 bp | ACCAGGCAGCACTGGGTAGACACAGAAATAGATGCCTTGCTTTTCAAAATCAGCTCCAGTAGTGTTGTGTaGAGGCGGGAGGAGGCCATC | + |
|
Preference number: 4 (lower is better) Translates to: TRQHWVDTEIDALLFKISSSSVV*RREEAI Trigger: GATGGCCTCCTCCCGCCTCCACACAACACTACTGGA...GCTGATTTTGAAAAGCAAGGCATCTATTTCTGTGTCTACCCAGTGCTGCCTGGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000026406.14 |
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| CDS-3UTR CCA 90 bp | AACCAGGCAGCACTGGGTAGACACAGAAATAGATGCCTTGCTTTTCAAAATCAGATCCACCACCCTGGCTaGAAGGTAGGAGGCAGGCAG | + |
|
Preference number: 4 (lower is better) Translates to: NQAALGRHRNRCLAFQNQIHHPG*KVGGRQ Trigger: CTGCCTGCCTCCTACCTTCCAGCCAGGGTGGTGGAT...CTGATTTTGAAAAGCAAGGCATCTATTTCTGTGTCTACCCAGTGCTGCCTGGTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000026406.14 |
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| CDS-3UTR TCA 90 bp | CAATACATATTTATTGAGAGCCTAATTGGTATCAGAAACCAGGCAGCACTGGGTGGGGAAGGATCCAGGTaGGCACAGCATCCACCACCC | + |
|
Preference number: 4 (lower is better) Translates to: QYIFIESLIGIRNQAALGGEGSR*AQHPPP Trigger: GGGTGGTGGATGCTGTGCTCACCTGGATCCTTCCCC...ACCCAGTGCTGCCTGGTTTCTGATACCAATTAGGCTCTCAATAAATATGTATTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026406.14 |
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| CDS-3UTR GCA 90 bp | ATATTTATTGAGAGCCTAATTGGTATCAGAAACCAGGCAGCACTGGGTAGACACCGGGAGGAGGCCATCTaGTGCAGGTCTTCTGCTCCA | + |
|
Preference number: 4 (lower is better) Translates to: IFIESLIGIRNQAALGRHREEAI*CRSSAP Trigger: TGGAGCAGAAGACCTGCAGCAGATGGCCTCCTCCCG...GTGTCTACCCAGTGCTGCCTGGTTTCTGATACCAATTAGGCTCTCAATAAATAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026406.14 |
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| CDS-3UTR CCA 90 bp | TTTATTGAGAGCCTAATTGGTATCAGAAACCAGGCAGCACTGGGTAGACACAGACAGCCGGCCAGGACTTaGAAGCCCTTCTGGTCAAGT | + |
|
Preference number: 4 (lower is better) Translates to: FIESLIGIRNQAALGRHRQPART*KPFWSS Trigger: ACTTGACCAGAAGGGCTTCCAAGTCCTGGCCGGCTG...TCTGTGTCTACCCAGTGCTGCCTGGTTTCTGATACCAATTAGGCTCTCAATAAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026406.14 |
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| CDS-3UTR GCA 90 bp | CAATACATATTTATTGAGAGCCTAATTGGTATCAGAAACCAGGCAGCACTGGGTGAGGAGGCCATCTGCTaGAGGTCTTCTGCTCCAGAG | + |
|
Preference number: 4 (lower is better) Translates to: QYIFIESLIGIRNQAALGEEAIC*RSSAPE Trigger: CTCTGGAGCAGAAGACCTGCAGCAGATGGCCTCCTC...ACCCAGTGCTGCCTGGTTTCTGATACCAATTAGGCTCTCAATAAATATGTATTG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026406.14 |
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| CDS-3UTR GCA 90 bp | ACCAGGCAGCACTGGGTAGACACAGAAATAGATGCCTTGCTTTTCAAAATCAGCACCCACTTGGCAACTTaGTGGACATTCTGGGGATCA | + |
|
Preference number: 4 (lower is better) Translates to: TRQHWVDTEIDALLFKISTHLAT*WTFWGS Trigger: TGATCCCCAGAATGTCCAGCAAGTTGCCAAGTGGGT...GCTGATTTTGAAAAGCAAGGCATCTATTTCTGTGTCTACCCAGTGCTGCCTGGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000026406.14 |
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| CDS-3UTR GCA 90 bp | GAAACCAGGCAGCACTGGGTAGACACAGAAATAGATGCCTTGCTTTTCAAAATCAACAAGCCTTCAGGGTaGTCTCCAGACTCTCCAGGT | + |
|
Preference number: 4 (lower is better) Translates to: ETRQHWVDTEIDALLFKINKPSG*SPDSPG Trigger: ACCTGGAGAGTCTGGAGAGCACCCTGAAGGCTTGTT...GATTTTGAAAAGCAAGGCATCTATTTCTGTGTCTACCCAGTGCTGCCTGGTTTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000026406.14 |
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| CDS-3UTR CCA 90 bp | ATTGGTATCAGAAACCAGGCAGCACTGGGTAGACACAGAAATAGATGCCTTGCTACTTGGAAGCCCTTCTaGTCAAGTTGCAGTGCCAGA | + |
|
Preference number: 4 (lower is better) Translates to: IGIRNQAALGRHRNRCLATWKPF*SSCSAR Trigger: TCTGGCACTGCAACTTGACCAGAAGGGCTTCCAAGT...AGCAAGGCATCTATTTCTGTGTCTACCCAGTGCTGCCTGGTTTCTGATACCAAT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026406.14 |
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| CDS-3UTR CCA 90 bp | AACCAGGCAGCACTGGGTAGACACAGAAATAGATGCCTTGCTTTTCAAAATCAGCATGCTCCAGGCAGCTaGTCACCTTCGTTAGTTCTG | + |
|
Preference number: 4 (lower is better) Translates to: NQAALGRHRNRCLAFQNQHAPGS*SPSLVL Trigger: CAGAACTAACGAAGGTGACCAGCTGCCTGGAGCATG...CTGATTTTGAAAAGCAAGGCATCTATTTCTGTGTCTACCCAGTGCTGCCTGGTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000026406.14 |
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| CDS-3UTR CCA 90 bp | ATATTTATTGAGAGCCTAATTGGTATCAGAAACCAGGCAGCACTGGGTAGACACAGCCAGGCTCCACAATaGAGACTTGTACTCCGAACG | + |
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Preference number: 4 (lower is better) Translates to: IFIESLIGIRNQAALGRHSQAPQ*RLVLRT Trigger: CGTTCGGAGTACAAGTCTCCATTGTGGAGCCTGGCT...GTGTCTACCCAGTGCTGCCTGGTTTCTGATACCAATTAGGCTCTCAATAAATAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026406.14 |
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| CDS-3UTR CCA 90 bp | GTATCAGAAACCAGGCAGCACTGGGTAGACACAGAAATAGATGCCTTGCTTTTCACTTGCTGGACATTCTaGGGATCAGTGATATCCAGT | + |
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Preference number: 4 (lower is better) Translates to: VSETRQHWVDTEIDALLFTCWTF*GSVISS Trigger: ACTGGATATCACTGATCCCCAGAATGTCCAGCAAGT...GAAAAGCAAGGCATCTATTTCTGTGTCTACCCAGTGCTGCCTGGTTTCTGATAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026406.14 |
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| CDS-3UTR CCA 90 bp | AACCAGGCAGCACTGGGTAGACACAGAAATAGATGCCTTGCTTTTCAAAATCAGGTGTCTTCACCCACTTaGCAACTTGCTGGACATTCT | + |
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Preference number: 4 (lower is better) Translates to: NQAALGRHRNRCLAFQNQVSSPT*QLAGHS Trigger: AGAATGTCCAGCAAGTTGCCAAGTGGGTGAAGACAC...CTGATTTTGAAAAGCAAGGCATCTATTTCTGTGTCTACCCAGTGCTGCCTGGTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000026406.14 |
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| CDS-3UTR CCA 90 bp | AGACACAGAAATAGATGCCTTGCTTTTCAAAATCAGCCTCTTGCTGTAAAGCTGCCAGACTCTCCAGGTTaGTCACAGGGGTTCGAAAGA | + |
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Preference number: 4 (lower is better) Translates to: RHRNRCLAFQNQPLAVKLPDSPG*SQGFER Trigger: TCTTTCGAACCCCTGTGACCAACCTGGAGAGTCTGG...CAGCTTTACAGCAAGAGGCTGATTTTGAAAAGCAAGGCATCTATTTCTGTGTCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000026406.14 |
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| CDS-3UTR TCA 90 bp | TACATATTTATTGAGAGCCTAATTGGTATCAGAAACCAGGCAGCACTGGGTAGACATTCTGGGGATCAGTaGTATCCAGTAGTGTTGTGT | + |
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Preference number: 4 (lower is better) Translates to: YIFIESLIGIRNQAALGRHSGDQ*YPVVLC Trigger: ACACAACACTACTGGATATCACTGATCCCCAGAATG...TCTACCCAGTGCTGCCTGGTTTCTGATACCAATTAGGCTCTCAATAAATATGTA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026406.14 |
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| CDS CCA 90 bp | GCTCCAGAGGGGGTCAGGCAGCCGGCCAGGACTTGGAAGCCCTTCTaGTCAAGTTGCAGTGCCAGAAGGCGCCCAAAGCCAGAGTCACAG | + |
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Preference number: 5 (lower is better) Translates to: APEGVRQPARTWKPF*SSCSARRRPKPESQ Trigger: CTGTGACTCTGGCTTTGGGCGCCTTCTGGCACTGCAACTTGACCAGAAGGGCTTCCAAGTCCTGGCCGGCTGCCTGACCCCCTCTGGAGC 63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000026406.14 ENSMUST00000145616.2 |
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| CDS GCA 90 bp | GTGATATCCAGTAGTGTTGTGTGGAGGCGGGAGGAGGCCATCTGCTaGAGGTCTTCTGCTCCAGAGGGGGTCAGGCAGCCGGCCAGGACT | + |
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Preference number: 5 (lower is better) Translates to: VISSSVVWRREEAIC*RSSAPEGVRQPART Trigger: AGTCCTGGCCGGCTGCCTGACCCCCTCTGGAGCAGAAGACCTGCAGCAGATGGCCTCCTCCCGCCTCCACACAACACTACTGGATATCAC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000026406.14 ENSMUST00000145616.2 |
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| CDS CCA 90 bp | GCCGGGCCCAACAAGCCTTCAGGGTGCTCTCCAGACTCTCCAGGTTaGTCACAGGGGTTCGAAAGAAGCCAGGCTCCACAATGGAGACTT | + |
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Preference number: 5 (lower is better) Translates to: AGPNKPSGCSPDSPG*SQGFERSQAPQWRL Trigger: AAGTCTCCATTGTGGAGCCTGGCTTCTTTCGAACCCCTGTGACCAACCTGGAGAGTCTGGAGAGCACCCTGAAGGCTTGTTGGGCCCGGC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026406.14 ENSMUST00000137747.2 |
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| CDS CCA 90 bp | TCTCCAGGTTGGTCACAGGGGTTCGAAAGAAGCCAGGCTCCACAATaGAGACTTGTACTCCGAACGGAGCCATGTCCCGCCTCAGGCTGT | + |
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Preference number: 5 (lower is better) Translates to: SPGWSQGFERSQAPQ*RLVLRTEPCPASGC Trigger: ACAGCCTGAGGCGGGACATGGCTCCGTTCGGAGTACAAGTCTCCATTGTGGAGCCTGGCTTCTTTCGAACCCCTGTGACCAACCTGGAGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026406.14 ENSMUST00000137747.2 |
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| CDS CCA 90 bp | ACTTGCTGGACATTCTGGGGATCAGTGATATCCAGTAGTGTTGTGTaGAGGCGGGAGGAGGCCATCTGCTGCAGGTCTTCTGCTCCAGAG | + |
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Preference number: 5 (lower is better) Translates to: TCWTFWGSVISSSVV*RREEAICCRSSAPE Trigger: CTCTGGAGCAGAAGACCTGCAGCAGATGGCCTCCTCCCGCCTCCACACAACACTACTGGATATCACTGATCCCCAGAATGTCCAGCAAGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026406.14 ENSMUST00000145616.2 |
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| CDS-3UTR CAA 90 bp | TTGGTATCAGAAACCAGGCAGCACTGGGTAGACACAGAAATAGATGCCTTGCTTGGCAGCCAGAGCAGCTaGGCATCCCAGCCTGGGCTG | + |
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Preference number: 5 (lower is better) Translates to: LVSETRQHWVDTEIDALLGSQSS*ASQPGL Trigger: CAGCCCAGGCTGGGATGCCAAGCTGCTCTGGCTGCC...AAGCAAGGCATCTATTTCTGTGTCTACCCAGTGCTGCCTGGTTTCTGATACCAA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026406.14 |
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| CDS TCA 90 bp | GTGTCTTCACCCACTTGGCAACTTGCTGGACATTCTGGGGATCAGTaGTATCCAGTAGTGTTGTGTGGAGGCGGGAGGAGGCCATCTGCT | + |
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Preference number: 5 (lower is better) Translates to: VSSPTWQLAGHSGDQ*YPVVLCGGGRRPSA Trigger: AGCAGATGGCCTCCTCCCGCCTCCACACAACACTACTGGATATCACTGATCCCCAGAATGTCCAGCAAGTTGCCAAGTGGGTGAAGACAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026406.14 ENSMUST00000145616.2 |
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| CDS CCA 90 bp | CCTGTCCAGGAGGGTGAAGTAAGAGGGGTGGGTTTTAGTCTAGGATaGTGCAGACTGCAGCTGCCCTTTGTAGACGTATTCCAGCGCAGT | + |
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Preference number: 5 (lower is better) Translates to: PVQEGEVRGVGFSLG*CRLQLPFVDVFQRS Trigger: ACTGCGCTGGAATACGTCTACAAAGGGCAGCTGCAGTCTGCACCATCCTAGACTAAAACCCACCCCTCTTACTTCACCCTCCTGGACAGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000135161.2 |
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| CDS TCA 90 bp | GGCAGCTGGTCACCTTCGTTAGTTCTGGGTCACAGATCAGGTTCATaGTGCGGCGCTGTACTCGAAGATAAGTATCGAGGAAGGCTTCCC | + |
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Preference number: 5 (lower is better) Translates to: GSWSPSLVLGHRSGS*CGAVLEDKYRGRLP Trigger: GGGAAGCCTTCCTCGATACTTATCTTCGAGTACAGCGCCGCATCATGAACCTGATCTGTGACCCAGAACTAACGAAGGTGACCAGCTGCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026406.14 |
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| CDS CCA 90 bp | TCTCCAACACGTGTCTTCACCCACTTGGCAACTTGCTGGACATTCTaGGGATCAGTGATATCCAGTAGTGTTGTGTGGAGGCGGGAGGAG | + |
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Preference number: 5 (lower is better) Translates to: SPTRVFTHLATCWTF*GSVISSSVVWRREE Trigger: CTCCTCCCGCCTCCACACAACACTACTGGATATCACTGATCCCCAGAATGTCCAGCAAGTTGCCAAGTGGGTGAAGACACGTGTTGGAGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000026406.14 ENSMUST00000145616.2 ENSMUST00000149961.2 |
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| CDS-3UTR CAA 90 bp | TTTATTGAGAGCCTAATTGGTATCAGAAACCAGGCAGCACTGGGTAGACACAGAGCAGCCGGCCAGGACTaGGAAGCCCTTCTGGTCAAG | + |
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Preference number: 5 (lower is better) Translates to: FIESLIGIRNQAALGRHRAAGQD*EALLVK Trigger: CTTGACCAGAAGGGCTTCCAAGTCCTGGCCGGCTGC...TCTGTGTCTACCCAGTGCTGCCTGGTTTCTGATACCAATTAGGCTCTCAATAAA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026406.14 |
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| CDS TCA 90 bp | GTACTCTCTGGAAATCATCCTGTGTTAGCCATGGTGTGGGCCCGATaGTACCAGCTACGCCAGCGTTATTCACCAGACCAAAAAGTCCAG | + |
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Preference number: 5 (lower is better) Translates to: VLSGNHPVLAMVWAR*YQLRQRYSPDQKVQ Trigger: CTGGACTTTTTGGTCTGGTGAATAACGCTGGCGTAGCTGGTATCATCGGGCCCACACCATGGCTAACACAGGATGATTTCCAGAGAGTAC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000026406.14 ENSMUST00000145616.2 ENSMUST00000149961.2 |
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| CDS GCA 90 bp | AAAAGTCCAGTTTCTCCAACACGTGTCTTCACCCACTTGGCAACTTaGTGGACATTCTGGGGATCAGTGATATCCAGTAGTGTTGTGTGG | + |
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Preference number: 5 (lower is better) Translates to: KSPVSPTRVFTHLAT*WTFWGSVISSSVVW Trigger: CCACACAACACTACTGGATATCACTGATCCCCAGAATGTCCAGCAAGTTGCCAAGTGGGTGAAGACACGTGTTGGAGAAACTGGACTTTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000026406.14 ENSMUST00000145616.2 ENSMUST00000149961.2 |
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| CDS-3UTR CAA 90 bp | CAATACATATTTATTGAGAGCCTAATTGGTATCAGAAACCAGGCAGCACTGGGTTCCAGACTCTCCAGGTaGGTCACAGGGGTTCGAAAG | + |
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Preference number: 5 (lower is better) Translates to: QYIFIESLIGIRNQAALGSRLSR*VTGVRK Trigger: CTTTCGAACCCCTGTGACCAACCTGGAGAGTCTGGA...ACCCAGTGCTGCCTGGTTTCTGATACCAATTAGGCTCTCAATAAATATGTATTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026406.14 |
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| CDS-3UTR CAA 90 bp | AGACACAGAAATAGATGCCTTGCTTTTCAAAATCAGCCTCTTGCTGTAAAGCTGCGTGTCTTCACCCACTaGGCAACTTGCTGGACATTC | + |
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Preference number: 5 (lower is better) Translates to: RHRNRCLAFQNQPLAVKLRVFTH*ATCWTF Trigger: GAATGTCCAGCAAGTTGCCAAGTGGGTGAAGACACG...CAGCTTTACAGCAAGAGGCTGATTTTGAAAAGCAAGGCATCTATTTCTGTGTCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000026406.14 |
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| CDS TCA 72 bp | AGGAGACTGACTGGGCGGGCCGGGGAAGGATCCAGGTaGGCACAGCATCCACCACCCTGGCTGGAAGGTAGG | + |
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Preference number: 6 (lower is better) Translates to: RRLTGRAGEGSR*AQHPPPWLEGR Trigger: CCTACCTTCCAGCCAGGGTGGTGGATGCTGTGCTCACCTGGATCCTTCCCCGGCCCGCCCAGTCAGTCTCCT 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026406.14 |
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| CDS CCA 72 bp | GGGGTCAGGCAGCCGGCCAGGACTTGGAAGCCCTTCTaGTCAAGTTGCAGTGCCAGAAGGCGCCCAAAGCCA | + |
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Preference number: 6 (lower is better) Translates to: GVRQPARTWKPF*SSCSARRRPKP Trigger: TGGCTTTGGGCGCCTTCTGGCACTGCAACTTGACCAGAAGGGCTTCCAAGTCCTGGCCGGCTGCCTGACCCC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026406.14 ENSMUST00000145616.2 |
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| CDS CCA 72 bp | TCTGCTCCAGAGGGGGTCAGGCAGCCGGCCAGGACTTaGAAGCCCTTCTGGTCAAGTTGCAGTGCCAGAAGG | + |
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Preference number: 6 (lower is better) Translates to: SAPEGVRQPART*KPFWSSCSARR Trigger: CCTTCTGGCACTGCAACTTGACCAGAAGGGCTTCCAAGTCCTGGCCGGCTGCCTGACCCCCTCTGGAGCAGA 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000026406.14 ENSMUST00000145616.2 |
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| CDS CCA 72 bp | GGGGGTGGCGAGCAGTCAGGGCATGCTCCAGGCAGCTaGTCACCTTCGTTAGTTCTGGGTCACAGATCAGGT | + |
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Preference number: 6 (lower is better) Translates to: GGGEQSGHAPGS*SPSLVLGHRSG Trigger: ACCTGATCTGTGACCCAGAACTAACGAAGGTGACCAGCTGCCTGGAGCATGCCCTGACTGCTCGCCACCCCC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000026406.14 ENSMUST00000137747.2 |
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| CDS CAA 72 bp | TTCTGCTCCAGAGGGGGTCAGGCAGCCGGCCAGGACTaGGAAGCCCTTCTGGTCAAGTTGCAGTGCCAGAAG | + |
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Preference number: 6 (lower is better) Translates to: FCSRGGQAAGQD*EALLVKLQCQK Trigger: CTTCTGGCACTGCAACTTGACCAGAAGGGCTTCCAAGTCCTGGCCGGCTGCCTGACCCCCTCTGGAGCAGAA 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000026406.14 ENSMUST00000145616.2 |
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| CDS TCA 72 bp | AAGGCACCCAGAAGCAGAGGCAGCCACATGATGGGATaGGATGCCCTGCTGAGGGCAGCCAGTTTCCCTCCT | + |
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Preference number: 6 (lower is better) Translates to: KAPRSRGSHMMG*DALLRAASFPP Trigger: AGGAGGGAAACTGGCTGCCCTCAGCAGGGCATCTCATCCCATCATGTGGCTGCCTCTGCTTCTGGGTGCCTT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000135161.2 |
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| CDS CAA 90 bp | AGCCGGGCCCAACAAGCCTTCAGGGTGCTCTCCAGACTCTCCAGGTaGGTCACAGGGGTTCGAAAGAAGCCAGGCTCCACAATGGAGACT | + |
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Preference number: 6 (lower is better) Translates to: SRAQQAFRVLSRLSR*VTGVRKKPGSTMET Trigger: AGTCTCCATTGTGGAGCCTGGCTTCTTTCGAACCCCTGTGACCAACCTGGAGAGTCTGGAGAGCACCCTGAAGGCTTGTTGGGCCCGGCT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026406.14 ENSMUST00000137747.2 |
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| CDS CCA 72 bp | TGGTCACAGGGGTTCGAAAGAAGCCAGGCTCCACAATaGAGACTTGTACTCCGAACGGAGCCATGTCCCGCC | + |
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Preference number: 6 (lower is better) Translates to: WSQGFERSQAPQ*RLVLRTEPCPA Trigger: GGCGGGACATGGCTCCGTTCGGAGTACAAGTCTCCATTGTGGAGCCTGGCTTCTTTCGAACCCCTGTGACCA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000026406.14 ENSMUST00000137747.2 ENSMUST00000149961.2 |
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| CDS CAA 72 bp | AGGGGTTCGAAAGAAGCCAGGCTCCACAATGGAGACTaGTACTCCGAACGGAGCCATGTCCCGCCTCAGGCT | + |
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Preference number: 6 (lower is better) Translates to: RGSKEARLHNGD*YSERSHVPPQA Trigger: AGCCTGAGGCGGGACATGGCTCCGTTCGGAGTACAAGTCTCCATTGTGGAGCCTGGCTTCTTTCGAACCCCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000026406.14 ENSMUST00000137747.2 ENSMUST00000149961.2 |
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| CDS CAA 90 bp | GTTGGTCACAGGGGTTCGAAAGAAGCCAGGCTCCACAATGGAGACTaGTACTCCGAACGGAGCCATGTCCCGCCTCAGGCTGTCAGAGAA | + |
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Preference number: 6 (lower is better) Translates to: VGHRGSKEARLHNGD*YSERSHVPPQAVRE Trigger: TTCTCTGACAGCCTGAGGCGGGACATGGCTCCGTTCGGAGTACAAGTCTCCATTGTGGAGCCTGGCTTCTTTCGAACCCCTGTGACCAAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000026406.14 ENSMUST00000137747.2 ENSMUST00000149961.2 |
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| CDS CAA 72 bp | CAACAAGCCTTCAGGGTGCTCTCCAGACTCTCCAGGTaGGTCACAGGGGTTCGAAAGAAGCCAGGCTCCACA | + |
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Preference number: 6 (lower is better) Translates to: QQAFRVLSRLSR*VTGVRKKPGST Trigger: TGTGGAGCCTGGCTTCTTTCGAACCCCTGTGACCAACCTGGAGAGTCTGGAGAGCACCCTGAAGGCTTGTTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026406.14 ENSMUST00000137747.2 |
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| CDS CCA 72 bp | AACAAGCCTTCAGGGTGCTCTCCAGACTCTCCAGGTTaGTCACAGGGGTTCGAAAGAAGCCAGGCTCCACAA | + |
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Preference number: 6 (lower is better) Translates to: NKPSGCSPDSPG*SQGFERSQAPQ Trigger: TTGTGGAGCCTGGCTTCTTTCGAACCCCTGTGACCAACCTGGAGAGTCTGGAGAGCACCCTGAAGGCTTGTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026406.14 ENSMUST00000137747.2 |
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| CDS TCA 72 bp | GGAAATCATCCTGTGTTAGCCATGGTGTGGGCCCGATaGTACCAGCTACGCCAGCGTTATTCACCAGACCAA | + |
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Preference number: 6 (lower is better) Translates to: GNHPVLAMVWAR*YQLRQRYSPDQ Trigger: TTGGTCTGGTGAATAACGCTGGCGTAGCTGGTATCATCGGGCCCACACCATGGCTAACACAGGATGATTTCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000026406.14 ENSMUST00000145616.2 ENSMUST00000149961.2 |
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| CDS CCA 72 bp | GAGGGTGAAGTAAGAGGGGTGGGTTTTAGTCTAGGATaGTGCAGACTGCAGCTGCCCTTTGTAGACGTATTC | + |
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Preference number: 6 (lower is better) Translates to: EGEVRGVGFSLG*CRLQLPFVDVF Trigger: GAATACGTCTACAAAGGGCAGCTGCAGTCTGCACCATCCTAGACTAAAACCCACCCCTCTTACTTCACCCTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000135161.2 |
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| CDS TCA 72 bp | TCACCTTCGTTAGTTCTGGGTCACAGATCAGGTTCATaGTGCGGCGCTGTACTCGAAGATAAGTATCGAGGA | + |
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Preference number: 6 (lower is better) Translates to: SPSLVLGHRSGS*CGAVLEDKYRG Trigger: TCCTCGATACTTATCTTCGAGTACAGCGCCGCATCATGAACCTGATCTGTGACCCAGAACTAACGAAGGTGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026406.14 |
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| CDS GCA 72 bp | GTTTCTCCAACACGTGTCTTCACCCACTTGGCAACTTaGTGGACATTCTGGGGATCAGTGATATCCAGTAGT | + |
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Preference number: 6 (lower is better) Translates to: VSPTRVFTHLAT*WTFWGSVISSS Trigger: ACTACTGGATATCACTGATCCCCAGAATGTCCAGCAAGTTGCCAAGTGGGTGAAGACACGTGTTGGAGAAAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000026406.14 ENSMUST00000145616.2 ENSMUST00000149961.2 |
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| CDS CAA 90 bp | ACCAGACCAAAAAGTCCAGTTTCTCCAACACGTGTCTTCACCCACTaGGCAACTTGCTGGACATTCTGGGGATCAGTGATATCCAGTAGT | + |
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Preference number: 6 (lower is better) Translates to: TRPKSPVSPTRVFTH*ATCWTFWGSVISSS Trigger: ACTACTGGATATCACTGATCCCCAGAATGTCCAGCAAGTTGCCAAGTGGGTGAAGACACGTGTTGGAGAAACTGGACTTTTTGGTCTGGT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000026406.14 ENSMUST00000145616.2 ENSMUST00000149961.2 |
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| CDS CAA 72 bp | AAAAGTCCAGTTTCTCCAACACGTGTCTTCACCCACTaGGCAACTTGCTGGACATTCTGGGGATCAGTGATA | + |
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Preference number: 6 (lower is better) Translates to: KSPVSPTRVFTH*ATCWTFWGSVI Trigger: TATCACTGATCCCCAGAATGTCCAGCAAGTTGCCAAGTGGGTGAAGACACGTGTTGGAGAAACTGGACTTTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000026406.14 ENSMUST00000145616.2 ENSMUST00000149961.2 |
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