Pregenerated sensors for RDH19 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000054052Ensembl transcript IDs: ENSMUST00000077530.3
Found 44 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CATGGCAGTGCTTGGCACTCGCTGGTCCCAACCTCCTCATATGTGTaGATCCTCAAGGAAGGCCATGATGATCAGGGCTTGGGCATCAGC | + |
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Preference number: 1 (lower is better) Translates to: HGSAWHSLVPTSSYV*ILKEGHDDQGLGIS Trigger: GCTGATGCCCAAGCCCTGATCATCATGGCCTTCCTTGAGGATCCACACATATGAGGAGGTTGGGACCAGCGAGTGCCAAGCACTGCCATG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000077530.3 |
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| 3UTR CCA 90 bp | CCCTGGCATGTGCATTTCCTTCAGAGGAGGACACATGGCAGTGCTTaGCACTCGCTGGTCCCAACCTCCTCATATGTGTGGATCCTCAAG | + |
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Preference number: 1 (lower is better) Translates to: PWHVHFLQRRTHGSA*HSLVPTSSYVWILK Trigger: CTTGAGGATCCACACATATGAGGAGGTTGGGACCAGCGAGTGCCAAGCACTGCCATGTGTCCTCCTCTGAAGGAAATGCACATGCCAGGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000077530.3 |
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| 3UTR GCA 90 bp | TTAGCCCTGGCATGTGCATTTCCTTCAGAGGAGGACACATGGCAGTaGTTGGCACTCGCTGGTCCCAACCTCCTCATATGTGTGGATCCT | + |
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Preference number: 1 (lower is better) Translates to: LALACAFPSEEDTWQ*LALAGPNLLICVDP Trigger: AGGATCCACACATATGAGGAGGTTGGGACCAGCGAGTGCCAAGCACTGCCATGTGTCCTCCTCTGAAGGAAATGCACATGCCAGGGCTAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000077530.3 |
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| 3UTR CCA 90 bp | TTTAAATTAGCCCTGGCATGTGCATTTCCTTCAGAGGAGGACACATaGCAGTGCTTGGCACTCGCTGGTCCCAACCTCCTCATATGTGTG | + |
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Preference number: 1 (lower is better) Translates to: FKLALACAFPSEEDT*QCLALAGPNLLICV Trigger: CACACATATGAGGAGGTTGGGACCAGCGAGTGCCAAGCACTGCCATGTGTCCTCCTCTGAAGGAAATGCACATGCCAGGGCTAATTTAAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000077530.3 |
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| 3UTR GCA 90 bp | ACTTTTGTAACTGAATCCCTTGGCAGAATTCTTTGCGTATTTCTTTaGTCATCATCCGTCTTGAGTAGTATCATAGGAGAATTAATGAGA | + |
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Preference number: 1 (lower is better) Translates to: TFVTESLGRILCVFL*SSSVLSSIIGELMR Trigger: TCTCATTAATTCTCCTATGATACTACTCAAGACGGATGATGAGCAAAGAAATACGCAAAGAATTCTGCCAAGGGATTCAGTTACAAAAGT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000077530.3 |
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| 3UTR-3UTR TCA 90 bp | CATTTGCTGGATTTTAACCCCAAGGGACTGAACCTCCTACCCAGGGCCTTGCCACCTGACTCCAGGGCATaGGTAATGATTCAGGTGGTC | + |
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Preference number: 2 (lower is better) Translates to: HLLDFNPKGLNLLPRALPPDSRA*VMIQVV Trigger: GACCACCTGAATCATTACTCATGCCCTGGAGTCAGG...TGGCAAGGCCCTGGGTAGGAGGTTCAGTCCCTTGGGGTTAAAATCCAGCAAATG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000077530.3 |
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| 3UTR-3UTR CCA 90 bp | CATTTGCTGGATTTTAACCCCAAGGGACTGAACCTCCTACCCAGGGCCTTGCCAATGATGATCAGGGCTTaGGCATCAGCTAGCACTTTT | + |
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Preference number: 2 (lower is better) Translates to: HLLDFNPKGLNLLPRALPMMIRA*ASASTF Trigger: AAAAGTGCTAGCTGATGCCCAAGCCCTGATCATCAT...TGGCAAGGCCCTGGGTAGGAGGTTCAGTCCCTTGGGGTTAAAATCCAGCAAATG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000077530.3 |
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| 3UTR-3UTR GCA 90 bp | TTGCTGGATTTTAACCCCAAGGGACTGAACCTCCTACCCAGGGCCTTGCCAACCCTTTGCGTATTTCTTTaGTCATCATCCGTCTTGAGT | + |
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Preference number: 2 (lower is better) Translates to: LLDFNPKGLNLLPRALPTLCVFL*SSSVLS Trigger: ACTCAAGACGGATGATGAGCAAAGAAATACGCAAAG...GGTTGGCAAGGCCCTGGGTAGGAGGTTCAGTCCCTTGGGGTTAAAATCCAGCAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000077530.3 |
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| 3UTR-3UTR GCA 90 bp | GGAAGGGCTGAGACAAAGCAAGAAGAATCCTGCTGTCCTGTAGAAACCCTTCTCATTAGCCCTGGCATGTaGATTTCCTTCAGAGGAGGA | + |
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Preference number: 2 (lower is better) Translates to: GRAETKQEESCCPVETLLISPGM*ISFRGG Trigger: TCCTCCTCTGAAGGAAATGCACATGCCAGGGCTAAT...GAGAAGGGTTTCTACAGGACAGCAGGATTCTTCTTGCTTTGTCTCAGCCCTTCC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000077530.3 |
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| 3UTR-3UTR CCA 90 bp | TTCTCAGGACATTCCCAATACCTCTGTCTTCCAAACCTCACTAACCTCCAAAGCACCTCCTCATATGTGTaGATCCTCAAGGAAGGCCAT | + |
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Preference number: 2 (lower is better) Translates to: FSGHSQYLCLPNLTNLQSTSSYV*ILKEGH Trigger: ATGGCCTTCCTTGAGGATCCACACATATGAGGAGGT...GCTTTGGAGGTTAGTGAGGTTTGGAAGACAGAGGTATTGGGAATGTCCTGAGAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000077530.3 |
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| 3UTR-3UTR GCA 90 bp | CATCATTTGCTGGATTTTAACCCCAAGGGACTGAACCTCCTACCCAGGGCCTTGCTTGGCAGAATTCTTTaGGTATTTCTTTGCTCATCA | + |
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Preference number: 2 (lower is better) Translates to: HHLLDFNPKGLNLLPRALLGRIL*VFLCSS Trigger: TGATGAGCAAAGAAATACGCAAAGAATTCTGCCAAG...CAAGGCCCTGGGTAGGAGGTTCAGTCCCTTGGGGTTAAAATCCAGCAAATGATG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000077530.3 |
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| 3UTR CAA 90 bp | GGTAAATTCTGTTCATGGGCTTGCATGCAGAGACTTCTGCACTATTaGTTGTTGTTAAGTTTTGAATGGAAAGTTGTTGTTCCTACTTCA | + |
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Preference number: 2 (lower is better) Translates to: GKFCSWACMQRLLHY*LLLSFEWKVVVPTS Trigger: TGAAGTAGGAACAACAACTTTCCATTCAAAACTTAACAACAACAAATAGTGCAGAAGTCTCTGCATGCAAGCCCATGAACAGAATTTACC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000077530.3 |
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| 3UTR CCA 72 bp | GCCCTGGCATGTGCATTTCCTTCAGAGGAGGACACATaGCAGTGCTTGGCACTCGCTGGTCCCAACCTCCTC | + |
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Preference number: 3 (lower is better) Translates to: ALACAFPSEEDT*QCLALAGPNLL Trigger: GAGGAGGTTGGGACCAGCGAGTGCCAAGCACTGCCATGTGTCCTCCTCTGAAGGAAATGCACATGCCAGGGC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000077530.3 |
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| 3UTR CCA 72 bp | TTCAGAGGAGGACACATGGCAGTGCTTGGCACTCGCTaGTCCCAACCTCCTCATATGTGTGGATCCTCAAGG | + |
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Preference number: 3 (lower is better) Translates to: FRGGHMAVLGTR*SQPPHMCGSSR Trigger: CCTTGAGGATCCACACATATGAGGAGGTTGGGACCAGCGAGTGCCAAGCACTGCCATGTGTCCTCCTCTGAA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000077530.3 |
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| 3UTR CCA 72 bp | GTGCATTTCCTTCAGAGGAGGACACATGGCAGTGCTTaGCACTCGCTGGTCCCAACCTCCTCATATGTGTGG | + |
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Preference number: 3 (lower is better) Translates to: VHFLQRRTHGSA*HSLVPTSSYVW Trigger: CCACACATATGAGGAGGTTGGGACCAGCGAGTGCCAAGCACTGCCATGTGTCCTCCTCTGAAGGAAATGCAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000077530.3 |
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| 3UTR GCA 72 bp | GCATGTGCATTTCCTTCAGAGGAGGACACATGGCAGTaGTTGGCACTCGCTGGTCCCAACCTCCTCATATGT | + |
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Preference number: 3 (lower is better) Translates to: ACAFPSEEDTWQ*LALAGPNLLIC Trigger: ACATATGAGGAGGTTGGGACCAGCGAGTGCCAAGCACTGCCATGTGTCCTCCTCTGAAGGAAATGCACATGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000077530.3 |
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| 3UTR CCA 72 bp | GGTCACTCCTCTCAGATCCCACACCATGGTTACTTATaGTTTCAGAGAAGGGACACTTCCATGATGCATAGG | + |
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Preference number: 3 (lower is better) Translates to: GHSSQIPHHGYL*FQRRDTSMMHR Trigger: CCTATGCATCATGGAAGTGTCCCTTCTCTGAAACCATAAGTAACCATGGTGTGGGATCTGAGAGGAGTGACC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000077530.3 |
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| 3UTR TCA 72 bp | GAAAGTTGTTGTTCCTACTTCAGTTGCTGGAAGGGCTaGGACAAAGCAAGAAGAATCCTGCTGTCCTGTAGA | + |
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Preference number: 3 (lower is better) Translates to: ESCCSYFSCWKG*DKARRILLSCR Trigger: TCTACAGGACAGCAGGATTCTTCTTGCTTTGTCTCAGCCCTTCCAGCAACTGAAGTAGGAACAACAACTTTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000077530.3 |
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| 3UTR-3UTR CAA 90 bp | TCATGGGCTTGCATGCAGAGACTTCTGCACTATTTGTTGTTGTTAAGTTTTGAATTGTTCCTACTTCAGTaGCTGGAAGGGCTGAGACAA | + |
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Preference number: 3 (lower is better) Translates to: SWACMQRLLHYLLLLSFELFLLQ*LEGLRQ Trigger: TTGTCTCAGCCCTTCCAGCAACTGAAGTAGGAACAA...TTCAAAACTTAACAACAACAAATAGTGCAGAAGTCTCTGCATGCAAGCCCATGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000077530.3 |
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| 3UTR GCA 72 bp | AGCACTTTTGTAACTGAATCCCTTGGCAGAATTCTTTaGGTATTTCTTTGCTCATCATCCGTCTTGAGTAGT | + |
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Preference number: 3 (lower is better) Translates to: STFVTESLGRIL*VFLCSSSVLSS Trigger: ACTACTCAAGACGGATGATGAGCAAAGAAATACGCAAAGAATTCTGCCAAGGGATTCAGTTACAAAAGTGCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000077530.3 |
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| 3UTR GCA 72 bp | AAGCTGAGTTCTACAGGTAAATTCTGTTCATGGGCTTaGATGCAGAGACTTCTGCACTATTTGTTGTTGTTA | + |
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Preference number: 3 (lower is better) Translates to: KLSSTGKFCSWA*MQRLLHYLLLL Trigger: TAACAACAACAAATAGTGCAGAAGTCTCTGCATGCAAGCCCATGAACAGAATTTACCTGTAGAACTCAGCTT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000077530.3 |
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| CDS-3UTR TCA 90 bp | TTGCTGGATTTTAACCCCAAGGGACTGAACCTCCTACCCAGGGCCTTGCCAACCTGTTCATCCACTGACTaGGACCCAAGGGGACGGAGA | + |
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Preference number: 4 (lower is better) Translates to: LLDFNPKGLNLLPRALPTCSSTD*DPRGRR Trigger: TCTCCGTCCCCTTGGGTCTCAGTCAGTGGATGAACA...GGTTGGCAAGGCCCTGGGTAGGAGGTTCAGTCCCTTGGGGTTAAAATCCAGCAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000077530.3 |
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| 3UTR CAA 72 bp | TGTGCATTTCCTTCAGAGGAGGACACATGGCAGTGCTaGGCACTCGCTGGTCCCAACCTCCTCATATGTGTG | + |
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Preference number: 4 (lower is better) Translates to: CAFPSEEDTWQC*ALAGPNLLICV Trigger: CACACATATGAGGAGGTTGGGACCAGCGAGTGCCAAGCACTGCCATGTGTCCTCCTCTGAAGGAAATGCACA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000077530.3 |
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| CDS-3UTR GCA 90 bp | CCTTCAGAGGAGGACACATGGCAGTGCTTGGCACTCGCTGGTCCCAACCTCCTCACTTTTCAGATAGAATaGCAGGTACTTCTCGCCATA | + |
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Preference number: 4 (lower is better) Translates to: PSEEDTWQCLALAGPNLLTFQIE*QVLLAI Trigger: TATGGCGAGAAGTACCTGGCATTCTATCTGAAAAGT...GAGGAGGTTGGGACCAGCGAGTGCCAAGCACTGCCATGTGTCCTCCTCTGAAGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000077530.3 |
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| CDS-3UTR CCA 90 bp | CATTTGCTGGATTTTAACCCCAAGGGACTGAACCTCCTACCCAGGGCCTTGCCATCACTAAGGGCAGCATaGTCAGAGTCACCTCGATCA | + |
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Preference number: 4 (lower is better) Translates to: HLLDFNPKGLNLLPRALPSLRAA*SESPRS Trigger: TGATCGAGGTGACTCTGACCATGCTGCCCTTAGTGA...TGGCAAGGCCCTGGGTAGGAGGTTCAGTCCCTTGGGGTTAAAATCCAGCAAATG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000077530.3 |
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| CDS-3UTR CCA 90 bp | CATCATTTGCTGGATTTTAACCCCAAGGGACTGAACCTCCTACCCAGGGCCTTGTGGTCCCACAGCATCTaGGTATTTGAGGATAATCGG | + |
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Preference number: 4 (lower is better) Translates to: HHLLDFNPKGLNLLPRALWSHSI*VFEDNR Trigger: CCGATTATCCTCAAATACCCAGATGCTGTGGGACCA...CAAGGCCCTGGGTAGGAGGTTCAGTCCCTTGGGGTTAAAATCCAGCAAATGATG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000077530.3 |
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| CDS-3UTR TCA 90 bp | ATTAATGAGATGAAATGTGTGAATGAAGAACCCCAGAGTAATAAACTCCCTCCCAGCATCCCAGCCAGCTaGGTATCGGGTGCGAGGGTG | + |
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Preference number: 4 (lower is better) Translates to: INEMKCVNEEPQSNKLPPSIPAS*VSGARV Trigger: CACCCTCGCACCCGATACTCAGCTGGCTGGGATGCT...GGGAGGGAGTTTATTACTCTGGGGTTCTTCATTCACACATTTCATCTCATTAAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000077530.3 |
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| CDS-3UTR GCA 90 bp | ATTAATGAGATGAAATGTGTGAATGAAGAACCCCAGAGTAATAAACTCCCTCCCAGGTGGCTCACCACCTaGCTCTCCCTGAAGAAGCGC | + |
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Preference number: 4 (lower is better) Translates to: INEMKCVNEEPQSNKLPPRWLTT*LSLKKR Trigger: GCGCTTCTTCAGGGAGAGGCAGGTGGTGAGCCACCT...GGGAGGGAGTTTATTACTCTGGGGTTCTTCATTCACACATTTCATCTCATTAAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000077530.3 |
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| CDS-3UTR GCA 90 bp | ATTAATGAGATGAAATGTGTGAATGAAGAACCCCAGAGTAATAAACTCCCTCCCCAGCTGAGTATCGGGTaGGAGGGTGACAGGCAGTCA | + |
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Preference number: 4 (lower is better) Translates to: INEMKCVNEEPQSNKLPPQLSIG*EGDRQS Trigger: TGACTGCCTGTCACCCTCGCACCCGATACTCAGCTG...GGGAGGGAGTTTATTACTCTGGGGTTCTTCATTCACACATTTCATCTCATTAAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000077530.3 |
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| CDS-3UTR CCA 90 bp | GGAAGGGCTGAGACAAAGCAAGAAGAATCCTGCTGTCCTGTAGAAACCCTTCTCCTTTCTCAGGCTTCATaGAAGTCCAGTAGAAAACAG | + |
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Preference number: 4 (lower is better) Translates to: GRAETKQEESCCPVETLLLSQAS*KSSRKQ Trigger: CTGTTTTCTACTGGACTTCCATGAAGCCTGAGAAAG...GAGAAGGGTTTCTACAGGACAGCAGGATTCTTCTTGCTTTGTCTCAGCCCTTCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000077530.3 |
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| CDS-3UTR GCA 90 bp | ATTAATGAGATGAAATGTGTGAATGAAGAACCCCAGAGTAATAAACTCCCTCCCTCAGAGCGTGCTCCATaGAGTCAGTCACCAAAGACA | + |
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Preference number: 4 (lower is better) Translates to: INEMKCVNEEPQSNKLPPSERAP*SQSPKT Trigger: TGTCTTTGGTGACTGACTGCATGGAGCACGCTCTGA...GGGAGGGAGTTTATTACTCTGGGGTTCTTCATTCACACATTTCATCTCATTAAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000077530.3 |
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| CDS-3UTR GCA 90 bp | CTTTGCGTATTTCTTTGCTCATCATCCGTCTTGAGTAGTATCATAGGAGAATTACACCATACTTGGAGATaGAGTAACCACCATTACCAT | + |
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Preference number: 4 (lower is better) Translates to: LCVFLCSSSVLSSIIGELHHTWR*SNHHYH Trigger: ATGGTAATGGTGGTTACTGCATCTCCAAGTATGGTG...TAATTCTCCTATGATACTACTCAAGACGGATGATGAGCAAAGAAATACGCAAAG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000077530.3 |
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| 3UTR CAA 72 bp | TGGGCTTGCATGCAGAGACTTCTGCACTATTTGTTGTaGTTAAGTTTTGAATGGAAAGTTGTTGTTCCTACT | + |
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Preference number: 4 (lower is better) Translates to: WACMQRLLHYLL*LSFEWKVVVPT Trigger: AGTAGGAACAACAACTTTCCATTCAAAACTTAACAACAACAAATAGTGCAGAAGTCTCTGCATGCAAGCCCA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000077530.3 |
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| CDS-3UTR GCA 90 bp | TCATGGGCTTGCATGCAGAGACTTCTGCACTATTTGTTGTTGTTAAGTTTTGAACACATCCAGTACACTTaGAAAGTTCTGTTTGTTCAT | + |
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Preference number: 4 (lower is better) Translates to: SWACMQRLLHYLLLLSFEHIQYT*KVLFVH Trigger: ATGAACAAACAGAACTTTGCAAGTGTACTGGATGTG...TTCAAAACTTAACAACAACAAATAGTGCAGAAGTCTCTGCATGCAAGCCCATGA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000077530.3 |
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| CDS-3UTR CAA 90 bp | CTTCAGAGGAGGACACATGGCAGTGCTTGGCACTCGCTGGTCCCAACCTCCTCAATGATGCTGGAGACGTaGACTACACGGCCCCTCGCC | + |
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Preference number: 5 (lower is better) Translates to: LQRRTHGSAWHSLVPTSSMMLET*TTRPLA Trigger: GGCGAGGGGCCGTGTAGTCAACGTCTCCAGCATCAT...TGAGGAGGTTGGGACCAGCGAGTGCCAAGCACTGCCATGTGTCCTCCTCTGAAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000077530.3 |
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| CDS GCA 90 bp | CTGAGTATCGGGTGCGAGGGTGACAGGCAGTCAGAGCGTGCTCCATaGAGTCAGTCACCAAAGACAGGTCCTTGTTGCACCTCTTGTCCA | + |
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Preference number: 5 (lower is better) Translates to: LSIGCEGDRQSERAP*SQSPKTGPCCTSCP Trigger: TGGACAAGAGGTGCAACAAGGACCTGTCTTTGGTGACTGACTGCATGGAGCACGCTCTGACTGCCTGTCACCCTCGCACCCGATACTCAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000077530.3 |
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| CDS-3UTR CAA 90 bp | CATTTGCTGGATTTTAACCCCAAGGGACTGAACCTCCTACCCAGGGCCTTGCCAGTGATGAAGACATACTaGTCTTGGAGGTGGCTCACC | + |
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Preference number: 5 (lower is better) Translates to: HLLDFNPKGLNLLPRALPVMKTY*SWRWLT Trigger: GGTGAGCCACCTCCAAGACAAGTATGTCTTCATCAC...TGGCAAGGCCCTGGGTAGGAGGTTCAGTCCCTTGGGGTTAAAATCCAGCAAATG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000077530.3 |
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| CDS-3UTR CAA 90 bp | TTGCTGGATTTTAACCCCAAGGGACTGAACCTCCTACCCAGGGCCTTGCCAACCAAAGACAGGTCCTTGTaGCACCTCTTGTCCAATTCA | + |
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Preference number: 5 (lower is better) Translates to: LLDFNPKGLNLLPRALPTKDRSL*HLLSNS Trigger: TGAATTGGACAAGAGGTGCAACAAGGACCTGTCTTT...GGTTGGCAAGGCCCTGGGTAGGAGGTTCAGTCCCTTGGGGTTAAAATCCAGCAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000077530.3 |
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| CDS TCA 90 bp | GACTTTTCAGATAGAATGCCAGGTACTTCTCGCCATAGATCTCCCTaGTTTCTGAGCTGGTCTGGTCCCACAGCATCTGGGTATTTGAGG | + |
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Preference number: 5 (lower is better) Translates to: DFSDRMPGTSRHRSP*FLSWSGPTASGYLR Trigger: CCTCAAATACCCAGATGCTGTGGGACCAGACCAGCTCAGAAATCAGGGAGATCTATGGCGAGAAGTACCTGGCATTCTATCTGAAAAGTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000077530.3 |
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| CDS-3UTR CAA 90 bp | TTCTCAGGACATTCCCAATACCTCTGTCTTCCAAACCTCACTAACCTCCAAAGCTCACATCCAGTACACTaGCAAAGTTCTGTTTGTTCA | + |
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Preference number: 5 (lower is better) Translates to: FSGHSQYLCLPNLTNLQSSHPVH*QSSVCS Trigger: TGAACAAACAGAACTTTGCAAGTGTACTGGATGTGA...GCTTTGGAGGTTAGTGAGGTTTGGAAGACAGAGGTATTGGGAATGTCCTGAGAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000077530.3 |
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| CDS GCA 72 bp | GGGTGCGAGGGTGACAGGCAGTCAGAGCGTGCTCCATaGAGTCAGTCACCAAAGACAGGTCCTTGTTGCACC | + |
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Preference number: 6 (lower is better) Translates to: GCEGDRQSERAP*SQSPKTGPCCT Trigger: GGTGCAACAAGGACCTGTCTTTGGTGACTGACTGCATGGAGCACGCTCTGACTGCCTGTCACCCTCGCACCC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000077530.3 |
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| CDS TCA 72 bp | GATAGAATGCCAGGTACTTCTCGCCATAGATCTCCCTaGTTTCTGAGCTGGTCTGGTCCCACAGCATCTGGG | + |
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Preference number: 6 (lower is better) Translates to: DRMPGTSRHRSP*FLSWSGPTASG Trigger: CCCAGATGCTGTGGGACCAGACCAGCTCAGAAATCAGGGAGATCTATGGCGAGAAGTACCTGGCATTCTATC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000077530.3 |
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| CDS CCA 72 bp | TCCCTGATTTCTGAGCTGGTCTGGTCCCACAGCATCTaGGTATTTGAGGATAATCGGGCACTACTGGCCATA | + |
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Preference number: 6 (lower is better) Translates to: SLISELVWSHSI*VFEDNRALLAI Trigger: TATGGCCAGTAGTGCCCGATTATCCTCAAATACCCAGATGCTGTGGGACCAGACCAGCTCAGAAATCAGGGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000077530.3 |
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| CDS CAA 72 bp | TTTCTGAGCTGGTCTGGTCCCACAGCATCTGGGTATTaGAGGATAATCGGGCACTACTGGCCATACCAGTCA | + |
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Preference number: 6 (lower is better) Translates to: FLSWSGPTASGY*RIIGHYWPYQS Trigger: TGACTGGTATGGCCAGTAGTGCCCGATTATCCTCAAATACCCAGATGCTGTGGGACCAGACCAGCTCAGAAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000077530.3 |
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