Pregenerated sensors for RDH16F2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000074639Ensembl transcript IDs: ENSMUST00000092058.4
Found 26 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GTTATACAGAGGAAGAAAAAGCCAGGCACCTATGCACAGCACATGTaGGCTGAGAACAGGAATCTTCCTCCTCCTGAGGCTCTGCACCCT | + |
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Preference number: 1 (lower is better) Translates to: VIQRKKKPGTYAQHM*AENRNLPPPEALHP Trigger: AGGGTGCAGAGCCTCAGGAGGAGGAAGATTCCTGTTCTCAGCCCACATGTGCTGTGCATAGGTGCCTGGCTTTTTCTTCCTCTGTATAAC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000092058.4 |
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| 3UTR-3UTR TCA 90 bp | TGGTCCCATGTCCCCCATGTTATACAGAGGAAGAAAAAGCCAGGCACCTATGCAGAATCTTCCTCCTCCTaGGGCTCTGCACCCTCACAC | + |
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Preference number: 2 (lower is better) Translates to: WSHVPHVIQRKKKPGTYAESSSS*GSAPSH Trigger: GTGTGAGGGTGCAGAGCCTCAGGAGGAGGAAGATTC...TGCATAGGTGCCTGGCTTTTTCTTCCTCTGTATAACATGGGGGACATGGGACCA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000092058.4 |
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| 3UTR-3UTR GCA 90 bp | ATTCCTGTGGTCCCATGTCCCCCATGTTATACAGAGGAAGAAAAAGCCAGGCACCTCCTCCTGAGGCTCTaGACCCTCACACAGCACTTC | + |
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Preference number: 2 (lower is better) Translates to: IPVVPCPPCYTEEEKARHLLLRL*TLTQHF Trigger: GAAGTGCTGTGTGAGGGTGCAGAGCCTCAGGAGGAG...GTGCCTGGCTTTTTCTTCCTCTGTATAACATGGGGGACATGGGACCACAGGAAT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000092058.4 |
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| 3UTR-3UTR TCA 90 bp | CTGTGGTCCCATGTCCCCCATGTTATACAGAGGAAGAAAAAGCCAGGCACCTATACAGCACATGTGGGCTaGGAACAGGAATCTTCCTCC | + |
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Preference number: 2 (lower is better) Translates to: LWSHVPHVIQRKKKPGTYTAHVG*EQESSS Trigger: GGAGGAAGATTCCTGTTCTCAGCCCACATGTGCTGT...ATAGGTGCCTGGCTTTTTCTTCCTCTGTATAACATGGGGGACATGGGACCACAG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000092058.4 |
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| 3UTR-3UTR CCA 90 bp | AGCATAGCAGATTCCTGTGGTCCCATGTCCCCCATGTTATACAGAGGAAGAAAATATGCACAGCACATGTaGGCTGAGAACAGGAATCTT | + |
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Preference number: 2 (lower is better) Translates to: SIADSCGPMSPMLYRGRKYAQHM*AENRNL Trigger: AAGATTCCTGTTCTCAGCCCACATGTGCTGTGCATA...TTTTCTTCCTCTGTATAACATGGGGGACATGGGACCACAGGAATCTGCTATGCT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000092058.4 |
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| 3UTR CCA 72 bp | AGGAAGAAAAAGCCAGGCACCTATGCACAGCACATGTaGGCTGAGAACAGGAATCTTCCTCCTCCTGAGGCT | + |
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Preference number: 3 (lower is better) Translates to: RKKKPGTYAQHM*AENRNLPPPEA Trigger: AGCCTCAGGAGGAGGAAGATTCCTGTTCTCAGCCCACATGTGCTGTGCATAGGTGCCTGGCTTTTTCTTCCT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000092058.4 |
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| 3UTR-3UTR CAA 90 bp | CCTATGCACAGCACATGTGGGCTGAGAACAGGAATCTTCCTCCTCCTGAGGCTCCACACAGCACTTCCATaGACCCAACAACACAAAAGG | + |
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Preference number: 3 (lower is better) Translates to: PMHSTCGLRTGIFLLLRLHTALP*TQQHKR Trigger: CCTTTTGTGTTGTTGGGTCAATGGAAGTGCTGTGTG...GAGCCTCAGGAGGAGGAAGATTCCTGTTCTCAGCCCACATGTGCTGTGCATAGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000092058.4 |
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| CDS-3UTR TCA 90 bp | CAGGCACCTATGCACAGCACATGTGGGCTGAGAACAGGAATCTTCCTCCTCCTGAGATGCTGGAGACGTTaGCCACACGGCCCCTCGCCT | + |
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Preference number: 4 (lower is better) Translates to: QAPMHSTCGLRTGIFLLLRCWRR*PHGPSP Trigger: AGGCGAGGGGCCGTGTGGTCAACGTCTCCAGCATCT...CAGGAGGAGGAAGATTCCTGTTCTCAGCCCACATGTGCTGTGCATAGGTGCCTG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000092058.4 |
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| CDS-3UTR TCA 90 bp | GCACAGCACATGTGGGCTGAGAACAGGAATCTTCCTCCTCCTGAGGCTCTGCACAGCATCCCAGCCAGCTaGGTATCTCGTGCGAGGGTG | + |
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Preference number: 4 (lower is better) Translates to: AQHMWAENRNLPPPEALHSIPAS*VSRARV Trigger: CACCCTCGCACGAGATACTCAGCTGGCTGGGATGCT...GTGCAGAGCCTCAGGAGGAGGAAGATTCCTGTTCTCAGCCCACATGTGCTGTGC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000092058.4 |
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| CDS-3UTR GCA 90 bp | CACAGCACATGTGGGCTGAGAACAGGAATCTTCCTCCTCCTGAGGCTCTGCACCCAGCTGAGTATCTCGTaGGAGGGTGACAGGCAGTCA | + |
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Preference number: 4 (lower is better) Translates to: HSTCGLRTGIFLLLRLCTQLSIS*EGDRQS Trigger: TGACTGCCTGTCACCCTCGCACGAGATACTCAGCTG...GGTGCAGAGCCTCAGGAGGAGGAAGATTCCTGTTCTCAGCCCACATGTGCTGTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000092058.4 |
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| CDS-3UTR TCA 90 bp | ATGCACAGCACATGTGGGCTGAGAACAGGAATCTTCCTCCTCCTGAGGCTCTGCCGCTCCTTCACCCACTaGGTGGCTGCCACAATATTC | + |
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Preference number: 4 (lower is better) Translates to: MHSTCGLRTGIFLLLRLCRSFTH*VAATIF Trigger: GAATATTGTGGCAGCCACTCAGTGGGTGAAGGAGCG...GCAGAGCCTCAGGAGGAGGAAGATTCCTGTTCTCAGCCCACATGTGCTGTGCAT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000092058.4 |
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| CDS-3UTR TCA 90 bp | GGCACCTATGCACAGCACATGTGGGCTGAGAACAGGAATCTTCCTCCTCCTGAGAAGACATACTTGTCTTaGAGATGGTCCACCACTTGC | + |
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Preference number: 4 (lower is better) Translates to: GTYAQHMWAENRNLPPPEKTYLS*RWSTTC Trigger: GCAAGTGGTGGACCATCTTCAAGACAAGTATGTCTT...CTCAGGAGGAGGAAGATTCCTGTTCTCAGCCCACATGTGCTGTGCATAGGTGCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000092058.4 |
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| CDS-3UTR CCA 90 bp | AGCATAGCAGATTCCTGTGGTCCCATGTCCCCCATGTTATACAGAGGAAGAAAATTTTCATCCACTCGTTaGGACCCGAGGGGACGGAGA | + |
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Preference number: 4 (lower is better) Translates to: SIADSCGPMSPMLYRGRKFSSTR*DPRGRR Trigger: TCTCCGTCCCCTCGGGTCCCAACGAGTGGATGAAAA...TTTTCTTCCTCTGTATAACATGGGGGACATGGGACCACAGGAATCTGCTATGCT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000092058.4 |
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| CDS-3UTR GCA 90 bp | AGCATAGCAGATTCCTGTGGTCCCATGTCCCCCATGTTATACAGAGGAAGAAAACACCAAGTGACACTCTaGCCAAGATGCTGGAGACGT | + |
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Preference number: 4 (lower is better) Translates to: SIADSCGPMSPMLYRGRKHQVTL*PRCWRR Trigger: ACGTCTCCAGCATCTTGGGCAGAGTGTCACTTGGTG...TTTTCTTCCTCTGTATAACATGGGGGACATGGGACCACAGGAATCTGCTATGCT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000092058.4 |
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| CDS-3UTR GCA 90 bp | AGCATAGCAGATTCCTGTGGTCCCATGTCCCCCATGTTATACAGAGGAAGAAAACACCCACTGAGTGGCTaGCACAATATTCTCTGTCTT | + |
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Preference number: 4 (lower is better) Translates to: SIADSCGPMSPMLYRGRKHPLSG*HNILCL Trigger: AAGACAGAGAATATTGTGGCAGCCACTCAGTGGGTG...TTTTCTTCCTCTGTATAACATGGGGGACATGGGACCACAGGAATCTGCTATGCT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000092058.4 |
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| CDS-3UTR CCA 90 bp | TCTGCACCCTCACACAGCACTTCCATTGACCCAACAACACAAAAGGATCTAGCTTGGTCCCACAGCATCTaGATATTTGAGCATAATCTG | + |
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Preference number: 4 (lower is better) Translates to: SAPSHSTSIDPTTQKDLAWSHSI*IFEHNL Trigger: CAGATTATGCTCAAATATCCAGATGCTGTGGGACCA...AGCTAGATCCTTTTGTGTTGTTGGGTCAATGGAAGTGCTGTGTGAGGGTGCAGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000092058.4 |
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| CDS-3UTR GCA 90 bp | GCAGATTCCTGTGGTCCCATGTCCCCCATGTTATACAGAGGAAGAAAAAGCCAGGTTTTTCAGATAGGATaGCAGGTATTTCTCTCCATA | + |
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Preference number: 4 (lower is better) Translates to: ADSCGPMSPMLYRGRKSQVFQIG*QVFLSI Trigger: TATGGAGAGAAATACCTGGCATCCTATCTGAAAAAC...CTGGCTTTTTCTTCCTCTGTATAACATGGGGGACATGGGACCACAGGAATCTGC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt. Matches the following 1 transcripts: ENSMUST00000092058.4 |
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| CDS GCA 90 bp | CTGAGTATCTCGTGCGAGGGTGACAGGCAGTCAGAGCGTGCTCCATaGAGTCAGTCACCACAGACAGGTCCTTGTTGCACCTCTGGTCCA | + |
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Preference number: 5 (lower is better) Translates to: LSISCEGDRQSERAP*SQSPQTGPCCTSGP Trigger: TGGACCAGAGGTGCAACAAGGACCTGTCTGTGGTGACTGACTGCATGGAGCACGCTCTGACTGCCTGTCACCCTCGCACGAGATACTCAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000092058.4 |
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| CDS-3UTR CAA 90 bp | CAGGCACCTATGCACAGCACATGTGGGCTGAGAACAGGAATCTTCCTCCTCCTGACAATATTCTCTGTCTaGGTGACATCCAGGATCACT | + |
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Preference number: 5 (lower is better) Translates to: QAPMHSTCGLRTGIFLLLTIFSV*VTSRIT Trigger: AGTGATCCTGGATGTCACCAAGACAGAGAATATTGT...CAGGAGGAGGAAGATTCCTGTTCTCAGCCCACATGTGCTGTGCATAGGTGCCTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000092058.4 |
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| CDS-3UTR CAA 90 bp | CAGGCACCTATGCACAGCACATGTGGGCTGAGAACAGGAATCTTCCTCCTCCTGACAGCATCTGGATATTaGAGCATAATCTGGCACTAC | + |
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Preference number: 5 (lower is better) Translates to: QAPMHSTCGLRTGIFLLLTASGY*SIIWHY Trigger: GTAGTGCCAGATTATGCTCAAATATCCAGATGCTGT...CAGGAGGAGGAAGATTCCTGTTCTCAGCCCACATGTGCTGTGCATAGGTGCCTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000092058.4 |
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| CDS-3UTR CAA 90 bp | AATGGTAATGATCATTTAAGCATAGCAGATTCCTGTGGTCCCATGTCCCCCATGGAAGACATACTTGTCTaGAAGATGGTCCACCACTTG | + |
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Preference number: 5 (lower is better) Translates to: NGNDHLSIADSCGPMSPMEDILV*KMVHHL Trigger: CAAGTGGTGGACCATCTTCAAGACAAGTATGTCTTC...CATGGGGGACATGGGACCACAGGAATCTGCTATGCTTAAATGATCATTACCATT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000092058.4 |
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| CDS GCA 72 bp | TCGTGCGAGGGTGACAGGCAGTCAGAGCGTGCTCCATaGAGTCAGTCACCACAGACAGGTCCTTGTTGCACC | + |
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Preference number: 6 (lower is better) Translates to: SCEGDRQSERAP*SQSPQTGPCCT Trigger: GGTGCAACAAGGACCTGTCTGTGGTGACTGACTGCATGGAGCACGCTCTGACTGCCTGTCACCCTCGCACGA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000092058.4 |
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| CDS CAA 72 bp | GCGTGCTCCATGCAGTCAGTCACCACAGACAGGTCCTaGTTGCACCTCTGGTCCAATTCGTTTAGGTTTTTC | + |
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Preference number: 6 (lower is better) Translates to: ACSMQSVTTDRS*LHLWSNSFRFF Trigger: GAAAAACCTAAACGAATTGGACCAGAGGTGCAACAAGGACCTGTCTGTGGTGACTGACTGCATGGAGCACGC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000092058.4 |
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| CDS TCA 72 bp | GATAGGATGCCAGGTATTTCTCTCCATAGATCTCCCTaGTTTCTGAGCTGGTCTGGTCCCACAGCATCTGGA | + |
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Preference number: 6 (lower is better) Translates to: DRMPGISLHRSP*FLSWSGPTASG Trigger: TCCAGATGCTGTGGGACCAGACCAGCTCAGAAATCAGGGAGATCTATGGAGAGAAATACCTGGCATCCTATC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000092058.4 |
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| CDS CAA 72 bp | TTTCTGAGCTGGTCTGGTCCCACAGCATCTGGATATTaGAGCATAATCTGGCACTACTGGCCATACCAGTCA | + |
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Preference number: 6 (lower is better) Translates to: FLSWSGPTASGY*SIIWHYWPYQS Trigger: TGACTGGTATGGCCAGTAGTGCCAGATTATGCTCAAATATCCAGATGCTGTGGGACCAGACCAGCTCAGAAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000092058.4 |
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| CDS CAA 72 bp | TGCTCCATGCAGTCAGTCACCACAGACAGGTCCTTGTaGCACCTCTGGTCCAATTCGTTTAGGTTTTTCAGA | + |
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Preference number: 6 (lower is better) Translates to: CSMQSVTTDRSL*HLWSNSFRFFR Trigger: TCTGAAAAACCTAAACGAATTGGACCAGAGGTGCAACAAGGACCTGTCTGTGGTGACTGACTGCATGGAGCA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000092058.4 |
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