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Pregenerated sensors for RDH16F1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000099009

Ensembl transcript IDs: ENSMUST00000128247.2

Found 11 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp CCAGCACCATCTTATAATGGCGATTGCTCACGGCACACACGCGATTaGTCGCGGCACGGCTCTCCACACCTTCCCATCTCTGAAGGCTCT +
Preference number: 1 (lower is better)
Translates to: PAPSYNGDCSRHTRD*SRHGSPHLPISEGS
Trigger: AGAGCCTTCAGAGATGGGAAGGTGTGGAGAGCCGTGCCGCGAGCAATCGCGTGTGTGCCGTGAGCAATCGCCATTATAAGATGGTGCTGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000128247.2
3UTR CCA 90 bp CCAGGGCATGTGCATTTCCTGCAGAGGAGGACACAGAAGAGTGCTTaGCACAAGCTGGTCCCAGCCTCTTCATCTGTGTCAACCTTCATG +
Preference number: 1 (lower is better)
Translates to: PGHVHFLQRRTQKSA*HKLVPASSSVSTFM
Trigger: CATGAAGGTTGACACAGATGAAGAGGCTGGGACCAGCTTGTGCCAAGCACTCTTCTGTGTCCTCCTCTGCAGGAAATGCACATGCCCTGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000128247.2
3UTR CCA 90 bp TTTGCTAGCTTTCACCACCAGGAACTGAACCTTCCACGCAGAGGCTaGCAAGCTGACTCCAGGGAATGGGTGCTGGCATTATTAGTGACT +
Preference number: 1 (lower is better)
Translates to: FASFHHQELNLPRRG*QADSREWVLALLVT
Trigger: AGTCACTAATAATGCCAGCACCCATTCCCTGGAGTCAGCTTGCCAGCCTCTGCGTGGAAGGTTCAGTTCCTGGTGGTGAAAGCTAGCAAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000128247.2
3UTR CCA 90 bp TGCATGCACAGGCTTCTGCCTTATGTGTTATTATTAAGTTTTAAATaGAGAGCAGTTGTTCCCACTCACTGGCAGGAAGGGATGAGACAG +
Preference number: 1 (lower is better)
Translates to: CMHRLLPYVLLLSFK*RAVVPTHWQEGMRQ
Trigger: CTGTCTCATCCCTTCCTGCCAGTGAGTGGGAACAACTGCTCTCCATTTAAAACTTAATAATAACACATAAGGCAGAAGCCTGTGCATGCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000128247.2
3UTR CCA 90 bp GAAAAGGAACTTGTGAAGCTGAGGCCTACAGGTAAATTCTGTCCATaGACTTGCATGCACAGGCTTCTGCCTTATGTGTTATTATTAAGT +
Preference number: 1 (lower is better)
Translates to: EKELVKLRPTGKFCP*TCMHRLLPYVLLLS
Trigger: ACTTAATAATAACACATAAGGCAGAAGCCTGTGCATGCAAGTCCATGGACAGAATTTACCTGTAGGCCTCAGCTTCACAAGTTCCTTTTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000128247.2
3UTR GCA 90 bp GAACTTGTGAAGCTGAGGCCTACAGGTAAATTCTGTCCATGGACTTaGATGCACAGGCTTCTGCCTTATGTGTTATTATTAAGTTTTAAA +
Preference number: 1 (lower is better)
Translates to: ELVKLRPTGKFCPWT*MHRLLPYVLLLSFK
Trigger: TTTAAAACTTAATAATAACACATAAGGCAGAAGCCTGTGCATGCAAGTCCATGGACAGAATTTACCTGTAGGCCTCAGCTTCACAAGTTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000128247.2
3UTR CAA 90 bp AGGAGTCAGGCATCTATGGGAACCCCTCCCCAGGGCACATCTGTATaGAGCCCAGGATTCTCTGTCTCTTCCACACATGATTTCCCTGCT +
Preference number: 2 (lower is better)
Translates to: RSQASMGTPPQGTSV*SPGFSVSSTHDFPA
Trigger: AGCAGGGAAATCATGTGTGGAAGAGACAGAGAATCCTGGGCTCAATACAGATGTGCCCTGGGGAGGGGTTCCCATAGATGCCTGACTCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000128247.2
3UTR TCA 72 bp TTGCTCGCGGCACGGCTCTCCACACCTTCCCATCTCTaGAGGCTCTCCCACACATGTACCATACAGGTACAC +
Preference number: 3 (lower is better)
Translates to: LLAARLSTPSHL*RLSHTCTIQVH
Trigger: GTGTACCTGTATGGTACATGTGTGGGAGAGCCTTCAGAGATGGGAAGGTGTGGAGAGCCGTGCCGCGAGCAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000128247.2
3UTR TCA 72 bp CCAGGAACTGAACCTTCCACGCAGAGGCTGGCAAGCTaGCTCCAGGGAATGGGTGCTGGCATTATTAGTGAC +
Preference number: 3 (lower is better)
Translates to: PGTEPSTQRLAS*LQGMGAGIISD
Trigger: GTCACTAATAATGCCAGCACCCATTCCCTGGAGTCAGCTTGCCAGCCTCTGCGTGGAAGGTTCAGTTCCTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000128247.2
3UTR TCA 72 bp TGTCTCCATCCTTTGCTAGCTTTCACCACCAGGAACTaGACCTTCCACGCAGAGGCTGGCAAGCTGACTCCA +
Preference number: 3 (lower is better)
Translates to: CLHPLLAFTTRN*TFHAEAGKLTP
Trigger: TGGAGTCAGCTTGCCAGCCTCTGCGTGGAAGGTTCAGTTCCTGGTGGTGAAAGCTAGCAAAGGATGGAGACA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000128247.2
3UTR TCA 72 bp CATCTATGGGAACCCCTCCCCAGGGCACATCTGTATTaGGCCCAGGATTCTCTGTCTCTTCCACACATGATT +
Preference number: 3 (lower is better)
Translates to: HLWEPLPRAHLY*AQDSLSLPHMI
Trigger: AATCATGTGTGGAAGAGACAGAGAATCCTGGGCTCAATACAGATGTGCCCTGGGGAGGGGTTCCCATAGATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000128247.2