Pregenerated sensors for RDH14 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000020621Ensembl transcript IDs: ENSMUST00000020947.7
Found 47 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR TCA 90 bp | TTCCTGACCAGGGGTATAATGGATCATCCTATACATAGTCCTGTTCTCTTTACTCCGGCGCCCCCAGCCTaGCAGAGCTCCTGCCTGAGC | + |
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Preference number: 4 (lower is better) Translates to: FLTRGIMDHPIHSPVLFTPAPPA*QSSCLS Trigger: GCTCAGGCAGGAGCTCTGTCAGGCTGGGGGCGCCGG...AGTAAAGAGAACAGGACTATGTATAGGATGATCCATTATACCCCTGGTCAGGAA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000020947.7 |
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| CDS-3UTR TCA 90 bp | TTCCTGACCAGGGGTATAATGGATCATCCTATACATAGTCCTGTTCTCTTTACTCTGTCTTCCCGTGCATaGGGCCCGGGTCCCCGCCTC | + |
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Preference number: 4 (lower is better) Translates to: FLTRGIMDHPIHSPVLFTLSSRA*GPGPRL Trigger: GAGGCGGGGACCCGGGCCTCATGCACGGGAAGACAG...AGTAAAGAGAACAGGACTATGTATAGGATGATCCATTATACCCCTGGTCAGGAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020947.7 |
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| CDS-3UTR TCA 90 bp | TTCCTGACCAGGGGTATAATGGATCATCCTATACATAGTCCTGTTCTCTTTACTGACAGAGCTCCTGCCTaGGCTGACCGGCCGCCTCCT | + |
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Preference number: 4 (lower is better) Translates to: FLTRGIMDHPIHSPVLFTDRAPA*ADRPPP Trigger: AGGAGGCGGCCGGTCAGCTCAGGCAGGAGCTCTGTC...AGTAAAGAGAACAGGACTATGTATAGGATGATCCATTATACCCCTGGTCAGGAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020947.7 |
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| CDS-3UTR GCA 90 bp | TTCCTGACCAGGGGTATAATGGATCATCCTATACATAGTCCTGTTCTCTTTACTGGGTCCCCGCCTCCCTaGTGCCGCTGGTTTCTTGGC | + |
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Preference number: 4 (lower is better) Translates to: FLTRGIMDHPIHSPVLFTGSPPP*CRWFLG Trigger: GCCAAGAAACCAGCGGCAGCAGGGAGGCGGGGACCC...AGTAAAGAGAACAGGACTATGTATAGGATGATCCATTATACCCCTGGTCAGGAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020947.7 |
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| CDS-3UTR CCA 90 bp | TTCCTGACCAGGGGTATAATGGATCATCCTATACATAGTCCTGTTCTCTTTACTCTGCCGCTGGTTTCTTaGCCCAGAGAACCGCCGGGC | + |
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Preference number: 4 (lower is better) Translates to: FLTRGIMDHPIHSPVLFTLPLVS*PREPPG Trigger: GCCCGGCGGTTCTCTGGGCCAAGAAACCAGCGGCAG...AGTAAAGAGAACAGGACTATGTATAGGATGATCCATTATACCCCTGGTCAGGAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020947.7 |
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| CDS-3UTR TCA 90 bp | TTCCTGACCAGGGGTATAATGGATCATCCTATACATAGTCCTGTTCTCTTTACTGCAGAAAGCTCGCACTaGGCGCAGCGAGGCAAGGTC | + |
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Preference number: 4 (lower is better) Translates to: FLTRGIMDHPIHSPVLFTAESSH*AQRGKV Trigger: GACCTTGCCTCGCTGCGCTCAGTGCGAGCTTTCTGC...AGTAAAGAGAACAGGACTATGTATAGGATGATCCATTATACCCCTGGTCAGGAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020947.7 |
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| CDS-3UTR GCA 90 bp | TTCCTGACCAGGGGTATAATGGATCATCCTATACATAGTCCTGTTCTCTTTACTGCCCAGGCCGCTGTTTaGTCCGGTGATCAGCACTGT | + |
|
Preference number: 4 (lower is better) Translates to: FLTRGIMDHPIHSPVLFTAQAAV*SGDQHC Trigger: ACAGTGCTGATCACCGGAGCAAACAGCGGCCTGGGC...AGTAAAGAGAACAGGACTATGTATAGGATGATCCATTATACCCCTGGTCAGGAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020947.7 |
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| CDS-3UTR CCA 90 bp | TTCCTGACCAGGGGTATAATGGATCATCCTATACATAGTCCTGTTCTCTTTACTCCTCCCTGCTGCCGCTaGTTTCTTGGCCCAGAGAAC | + |
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Preference number: 4 (lower is better) Translates to: FLTRGIMDHPIHSPVLFTPPCCR*FLGPEN Trigger: GTTCTCTGGGCCAAGAAACCAGCGGCAGCAGGGAGG...AGTAAAGAGAACAGGACTATGTATAGGATGATCCATTATACCCCTGGTCAGGAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020947.7 |
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| CDS-3UTR TCA 90 bp | TTCCTGACCAGGGGTATAATGGATCATCCTATACATAGTCCTGTTCTCTTTACTAAACCCCCGCATTATTaGTCAGGACGTCTAGCCTGG | + |
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Preference number: 4 (lower is better) Translates to: FLTRGIMDHPIHSPVLFTKPPHY*SGRLAW Trigger: CCAGGCTAGACGTCCTGATCAATAATGCGGGGGTTT...AGTAAAGAGAACAGGACTATGTATAGGATGATCCATTATACCCCTGGTCAGGAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000020947.7 |
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| CDS-3UTR TCA 90 bp | TTCCTGACCAGGGGTATAATGGATCATCCTATACATAGTCCTGTTCTCTTTACTGCCAGCAGTGGGATGTaGATATGCCTCCCTAGGTTT | + |
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Preference number: 4 (lower is better) Translates to: FLTRGIMDHPIHSPVLFTASSGM*ICLPRF Trigger: AAACCTAGGGAGGCATATTCACATCCCACTGCTGGC...AGTAAAGAGAACAGGACTATGTATAGGATGATCCATTATACCCCTGGTCAGGAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020947.7 |
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| CDS-3UTR TCA 90 bp | TTCCTGACCAGGGGTATAATGGATCATCCTATACATAGTCCTGTTCTCTTTACTCAAGGAGAAGATTGGTaGGTAGGAAGTGGCCCAGAT | + |
|
Preference number: 4 (lower is better) Translates to: FLTRGIMDHPIHSPVLFTQGEDW*VGSGPD Trigger: ATCTGGGCCACTTCCTACTCACCAATCTTCTCCTTG...AGTAAAGAGAACAGGACTATGTATAGGATGATCCATTATACCCCTGGTCAGGAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020947.7 |
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| CDS-3UTR TCA 90 bp | TTCCTGACCAGGGGTATAATGGATCATCCTATACATAGTCCTGTTCTCTTTACTAATCCTGCTGGGAGCTaGACTTTTGAGGAGTCCAAG | + |
|
Preference number: 4 (lower is better) Translates to: FLTRGIMDHPIHSPVLFTNPAGS*TFEESK Trigger: CTTGGACTCCTCAAAAGTTCAGCTCCCAGCAGGATT...AGTAAAGAGAACAGGACTATGTATAGGATGATCCATTATACCCCTGGTCAGGAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020947.7 |
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| CDS-3UTR GCA 90 bp | TTCCTGACCAGGGGTATAATGGATCATCCTATACATAGTCCTGTTCTCTTTACTCGCACAATACCAGGATaGAGCACATTGACAGTCACG | + |
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Preference number: 4 (lower is better) Translates to: FLTRGIMDHPIHSPVLFTRTIPG*STLTVT Trigger: CGTGACTGTCAATGTGCTGCATCCTGGTATTGTGCG...AGTAAAGAGAACAGGACTATGTATAGGATGATCCATTATACCCCTGGTCAGGAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020947.7 |
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| CDS-3UTR CCA 90 bp | TTCCTGACCAGGGGTATAATGGATCATCCTATACATAGTCCTGTTCTCTTTACTAGGAAGTGGCCCAGATaGTTCACTCCAAACTGCATC | + |
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Preference number: 4 (lower is better) Translates to: FLTRGIMDHPIHSPVLFTRKWPR*FTPNCI Trigger: GATGCAGTTTGGAGTGAACCATCTGGGCCACTTCCT...AGTAAAGAGAACAGGACTATGTATAGGATGATCCATTATACCCCTGGTCAGGAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020947.7 |
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| CDS-3UTR TCA 90 bp | TTCCTGACCAGGGGTATAATGGATCATCCTATACATAGTCCTGTTCTCTTTACTCCCAGGATACCAAATTaGAAAGTGGTCTTGCCAGCA | + |
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Preference number: 4 (lower is better) Translates to: FLTRGIMDHPIHSPVLFTPRIPN*KVVLPA Trigger: TGCTGGCAAGACCACTTTTCAATTTGGTATCCTGGG...AGTAAAGAGAACAGGACTATGTATAGGATGATCCATTATACCCCTGGTCAGGAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020947.7 |
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| CDS-3UTR TCA 90 bp | TTCCTGACCAGGGGTATAATGGATCATCCTATACATAGTCCTGTTCTCTTTACTCAACCATCACTTCACTaGTATCCCACAGTTTTCTTG | + |
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Preference number: 4 (lower is better) Translates to: FLTRGIMDHPIHSPVLFTQPSLH*YPTVFL Trigger: CAAGAAAACTGTGGGATATCAGTGAAGTGATGGTTG...AGTAAAGAGAACAGGACTATGTATAGGATGATCCATTATACCCCTGGTCAGGAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020947.7 |
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| CDS-3UTR GCA 90 bp | TTCCTGACCAGGGGTATAATGGATCATCCTATACATAGTCCTGTTCTCTTTACTTGGTTCACTCCAAACTaGATCTCAAACCCATCTTCA | + |
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Preference number: 4 (lower is better) Translates to: FLTRGIMDHPIHSPVLFTWFTPN*ISNPSS Trigger: TGAAGATGGGTTTGAGATGCAGTTTGGAGTGAACCA...AGTAAAGAGAACAGGACTATGTATAGGATGATCCATTATACCCCTGGTCAGGAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020947.7 |
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| CDS-3UTR GCA 90 bp | TTCCTGACCAGGGGTATAATGGATCATCCTATACATAGTCCTGTTCTCTTTACTATTGAAAAGTGGTCTTaGCAGCAGTGGGATGTGAAT | + |
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Preference number: 4 (lower is better) Translates to: FLTRGIMDHPIHSPVLFTIEKWS*QQWDVN Trigger: ATTCACATCCCACTGCTGGCAAGACCACTTTTCAAT...AGTAAAGAGAACAGGACTATGTATAGGATGATCCATTATACCCCTGGTCAGGAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020947.7 |
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| CDS-3UTR CCA 90 bp | TTCCTGACCAGGGGTATAATGGATCATCCTATACATAGTCCTGTTCTCTTTACTTACCAAATTGAAAAGTaGTCTTGCCAGCAGTGGGAT | + |
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Preference number: 4 (lower is better) Translates to: FLTRGIMDHPIHSPVLFTYQIEK*SCQQWD Trigger: ATCCCACTGCTGGCAAGACCACTTTTCAATTTGGTA...AGTAAAGAGAACAGGACTATGTATAGGATGATCCATTATACCCCTGGTCAGGAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020947.7 |
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| CDS-3UTR CCA 90 bp | TTCCTGACCAGGGGTATAATGGATCATCCTATACATAGTCCTGTTCTCTTTACTAACAGGCTAAATAGATaGAAGTCTGGGCACCTTCTA | + |
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Preference number: 4 (lower is better) Translates to: FLTRGIMDHPIHSPVLFTNRLNR*KSGHLL Trigger: TAGAAGGTGCCCAGACTTCCATCTATTTAGCCTGTT...AGTAAAGAGAACAGGACTATGTATAGGATGATCCATTATACCCCTGGTCAGGAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020947.7 |
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| CDS-3UTR TCA 90 bp | TTCCTGACCAGGGGTATAATGGATCATCCTATACATAGTCCTGTTCTCTTTACTCTTCTAATGGAGTTTTaGAAAAAGCCCAGGATACCA | + |
|
Preference number: 4 (lower is better) Translates to: FLTRGIMDHPIHSPVLFTLLMEF*KKPRIP Trigger: TGGTATCCTGGGCTTTTTTCAAAACTCCATTAGAAG...AGTAAAGAGAACAGGACTATGTATAGGATGATCCATTATACCCCTGGTCAGGAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000020947.7 |
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| CDS TCA 90 bp | CGGTGCCGTCGGGCCCGGCGCCCCCAGCCTGACAGAGCTCCTGCCTaGGCTGACCGGCCGCCTCCTCTGCTCGAGCGCGGTCCCGACATC | + |
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Preference number: 5 (lower is better) Translates to: RCRRARRPQPDRAPA*ADRPPPLLERGPDI Trigger: GATGTCGGGACCGCGCTCGAGCAGAGGAGGCGGCCGGTCAGCTCAGGCAGGAGCTCTGTCAGGCTGGGGGCGCCGGGCCCGACGGCACCG 76% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020947.7 |
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| CDS GCA 90 bp | AGCACTGTCTTCCCGTGCATGAGGCCCGGGTCCCCGCCTCCCTGCTaGCGCTGGTTTCTTGGCCCAGAGAACCGCCGGGCCGCCAGCCAC | + |
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Preference number: 5 (lower is better) Translates to: STVFPCMRPGSPPPC*RWFLGPENRRAASH Trigger: GTGGCTGGCGGCCCGGCGGTTCTCTGGGCCAAGAAACCAGCGGCAGCAGGGAGGCGGGGACCCGGGCCTCATGCACGGGAAGACAGTGCT 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020947.7 |
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| CDS GCA 90 bp | CCCAGCCTGACAGAGCTCCTGCCTGAGCTGACCGGCCGCCTCCTCTaGTCGAGCGCGGTCCCGACATCCCATGATGACCCGCGCCCCCAG | + |
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Preference number: 5 (lower is better) Translates to: PSLTELLPELTGRLL*SSAVPTSHDDPRPQ Trigger: CTGGGGGCGCGGGTCATCATGGGATGTCGGGACCGCGCTCGAGCAGAGGAGGCGGCCGGTCAGCTCAGGCAGGAGCTCTGTCAGGCTGGG 71% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020947.7 |
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| CDS CCA 90 bp | TTATTGATCAGGACGTCTAGCCTGGGCTCCTCCTGTAGCAGTTCTTaGCAGAAAGCTCGCACTGAGCGCAGCGAGGCAAGGTCCAGCTCC | + |
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Preference number: 5 (lower is better) Translates to: LLIRTSSLGSSCSSS*QKARTERSEARSSS Trigger: GGAGCTGGACCTTGCCTCGCTGCGCTCAGTGCGAGCTTTCTGCCAAGAACTGCTACAGGAGGAGCCCAGGCTAGACGTCCTGATCAATAA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020947.7 |
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| CDS TCA 90 bp | CATCTTCAGTCTTCGTATACGGGCAGTGGAAAACCCCCGCATTATTaGTCAGGACGTCTAGCCTGGGCTCCTCCTGTAGCAGTTCTTGGC | + |
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Preference number: 5 (lower is better) Translates to: HLQSSYTGSGKPPHY*SGRLAWAPPVAVLG Trigger: GCCAAGAACTGCTACAGGAGGAGCCCAGGCTAGACGTCCTGATCAATAATGCGGGGGTTTTCCACTGCCCGTATACGAAGACTGAAGATG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000020947.7 |
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| CDS-3UTR CAA 90 bp | TTCCTGACCAGGGGTATAATGGATCATCCTATACATAGTCCTGTTCTCTTTACTGCTGCCGCTGGTTTCTaGGCCCAGAGAACCGCCGGG | + |
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Preference number: 5 (lower is better) Translates to: FLTRGIMDHPIHSPVLFTAAAGF*AQRTAG Trigger: CCCGGCGGTTCTCTGGGCCAAGAAACCAGCGGCAGC...AGTAAAGAGAACAGGACTATGTATAGGATGATCCATTATACCCCTGGTCAGGAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020947.7 |
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| CDS TCA 90 bp | GCCCAGGATACCAAATTGAAAAGTGGTCTTGCCAGCAGTGGGATGTaGATATGCCTCCCTAGGTTTGTTCGCACAATACCAGGATGCAGC | + |
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Preference number: 5 (lower is better) Translates to: AQDTKLKSGLASSGM*ICLPRFVRTIPGCS Trigger: GCTGCATCCTGGTATTGTGCGAACAAACCTAGGGAGGCATATTCACATCCCACTGCTGGCAAGACCACTTTTCAATTTGGTATCCTGGGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020947.7 |
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| CDS TCA 90 bp | TATGCCTCCCTAGGTTTGTTCGCACAATACCAGGATGCAGCACATTaGCAGTCACGTTTGTTCCTTCTAAGCGACGGGCTAATTCTCTTG | + |
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Preference number: 5 (lower is better) Translates to: YASLGLFAQYQDAAH*QSRLFLLSDGLILL Trigger: CAAGAGAATTAGCCCGTCGCTTAGAAGGAACAAACGTGACTGTCAATGTGCTGCATCCTGGTATTGTGCGAACAAACCTAGGGAGGCATA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020947.7 |
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| CDS GCA 90 bp | AGAAGATTGGTGAGTAGGAAGTGGCCCAGATGGTTCACTCCAAACTaGATCTCAAACCCATCTTCAGTCTTCGTATACGGGCAGTGGAAA | + |
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Preference number: 5 (lower is better) Translates to: RRLVSRKWPRWFTPN*ISNPSSVFVYGQWK Trigger: TTTCCACTGCCCGTATACGAAGACTGAAGATGGGTTTGAGATGCAGTTTGGAGTGAACCATCTGGGCCACTTCCTACTCACCAATCTTCT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020947.7 |
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| CDS-3UTR CAA 90 bp | TTCCTGACCAGGGGTATAATGGATCATCCTATACATAGTCCTGTTCTCTTTACTGACTCATCCATAGCTTaGGGCAAGAGCTCTTCCTCC | + |
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Preference number: 5 (lower is better) Translates to: FLTRGIMDHPIHSPVLFTDSSIA*GKSSSS Trigger: GGAGGAAGAGCTCTTGCCCAAAGCTATGGATGAGTC...AGTAAAGAGAACAGGACTATGTATAGGATGATCCATTATACCCCTGGTCAGGAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020947.7 |
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| CDS-3UTR CAA 90 bp | TTCCTGACCAGGGGTATAATGGATCATCCTATACATAGTCCTGTTCTCTTTACTCTGGGAGCTGAACTTTaGAGGAGTCCAAGGAGAAGA | + |
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Preference number: 5 (lower is better) Translates to: FLTRGIMDHPIHSPVLFTLGAEL*RSPRRR Trigger: TCTTCTCCTTGGACTCCTCAAAAGTTCAGCTCCCAG...AGTAAAGAGAACAGGACTATGTATAGGATGATCCATTATACCCCTGGTCAGGAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020947.7 |
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| CDS-3UTR CAA 90 bp | TTCCTGACCAGGGGTATAATGGATCATCCTATACATAGTCCTGTTCTCTTTACTGCCCAGGATACCAAATaGAAAAGTGGTCTTGCCAGC | + |
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Preference number: 5 (lower is better) Translates to: FLTRGIMDHPIHSPVLFTAQDTK*KSGLAS Trigger: GCTGGCAAGACCACTTTTCAATTTGGTATCCTGGGC...AGTAAAGAGAACAGGACTATGTATAGGATGATCCATTATACCCCTGGTCAGGAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020947.7 |
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| CDS-3UTR CAA 90 bp | TTCCTGACCAGGGGTATAATGGATCATCCTATACATAGTCCTGTTCTCTTTACTTATGCCTCCCTAGGTTaGTTCGCACAATACCAGGAT | + |
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Preference number: 5 (lower is better) Translates to: FLTRGIMDHPIHSPVLFTYASLG*FAQYQD Trigger: ATCCTGGTATTGTGCGAACAAACCTAGGGAGGCATA...AGTAAAGAGAACAGGACTATGTATAGGATGATCCATTATACCCCTGGTCAGGAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020947.7 |
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| CDS-3UTR CAA 90 bp | TTCCTGACCAGGGGTATAATGGATCATCCTATACATAGTCCTGTTCTCTTTACTGCTTTTATTATAGCTTaGCTCACTGTTCAAGTCTTC | + |
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Preference number: 5 (lower is better) Translates to: FLTRGIMDHPIHSPVLFTAFIIA*LTVQVF Trigger: GAAGACTTGAACAGTGAGCAAAGCTATAATAAAAGC...AGTAAAGAGAACAGGACTATGTATAGGATGATCCATTATACCCCTGGTCAGGAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020947.7 |
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| CDS CCA 72 bp | CGCAGCGAGGCAAGGTCCAGCTCCTTAACGACCAGCTaGCCATCGGTGCCGTCGGGCCCGGCGCCCCCAGCC | + |
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Preference number: 6 (lower is better) Translates to: RSEARSSSLTTS*PSVPSGPAPPA Trigger: GGCTGGGGGCGCCGGGCCCGACGGCACCGATGGCCAGCTGGTCGTTAAGGAGCTGGACCTTGCCTCGCTGCG 74% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020947.7 |
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| CDS GCA 72 bp | TTCCCGTGCATGAGGCCCGGGTCCCCGCCTCCCTGCTaGCGCTGGTTTCTTGGCCCAGAGAACCGCCGGGCC | + |
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Preference number: 6 (lower is better) Translates to: FPCMRPGSPPPC*RWFLGPENRRA Trigger: GGCCCGGCGGTTCTCTGGGCCAAGAAACCAGCGGCAGCAGGGAGGCGGGGACCCGGGCCTCATGCACGGGAA 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020947.7 |
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| CDS GCA 72 bp | ACAGAGCTCCTGCCTGAGCTGACCGGCCGCCTCCTCTaGTCGAGCGCGGTCCCGACATCCCATGATGACCCG | + |
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Preference number: 6 (lower is better) Translates to: TELLPELTGRLL*SSAVPTSHDDP Trigger: CGGGTCATCATGGGATGTCGGGACCGCGCTCGAGCAGAGGAGGCGGCCGGTCAGCTCAGGCAGGAGCTCTGT 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020947.7 |
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| CDS TCA 72 bp | TCTTCGTATACGGGCAGTGGAAAACCCCCGCATTATTaGTCAGGACGTCTAGCCTGGGCTCCTCCTGTAGCA | + |
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Preference number: 6 (lower is better) Translates to: SSYTGSGKPPHY*SGRLAWAPPVA Trigger: TGCTACAGGAGGAGCCCAGGCTAGACGTCCTGATCAATAATGCGGGGGTTTTCCACTGCCCGTATACGAAGA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000020947.7 |
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| CDS CAA 90 bp | CCATCTTCAGTCTTCGTATACGGGCAGTGGAAAACCCCCGCATTATaGATCAGGACGTCTAGCCTGGGCTCCTCCTGTAGCAGTTCTTGG | + |
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Preference number: 6 (lower is better) Translates to: PSSVFVYGQWKTPAL*IRTSSLGSSCSSSW Trigger: CCAAGAACTGCTACAGGAGGAGCCCAGGCTAGACGTCCTGATCAATAATGCGGGGGTTTTCCACTGCCCGTATACGAAGACTGAAGATGG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000020947.7 |
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| CDS CAA 72 bp | CCTAGGTTTGTTCGCACAATACCAGGATGCAGCACATaGACAGTCACGTTTGTTCCTTCTAAGCGACGGGCT | + |
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Preference number: 6 (lower is better) Translates to: PRFVRTIPGCST*TVTFVPSKRRA Trigger: AGCCCGTCGCTTAGAAGGAACAAACGTGACTGTCAATGTGCTGCATCCTGGTATTGTGCGAACAAACCTAGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020947.7 |
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| CDS TCA 72 bp | CTAGGTTTGTTCGCACAATACCAGGATGCAGCACATTaGCAGTCACGTTTGTTCCTTCTAAGCGACGGGCTA | + |
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Preference number: 6 (lower is better) Translates to: LGLFAQYQDAAH*QSRLFLLSDGL Trigger: TAGCCCGTCGCTTAGAAGGAACAAACGTGACTGTCAATGTGCTGCATCCTGGTATTGTGCGAACAAACCTAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020947.7 |
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| CDS CCA 72 bp | ATCTCAAACCCATCTTCAGTCTTCGTATACGGGCAGTaGAAAACCCCCGCATTATTGATCAGGACGTCTAGC | + |
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Preference number: 6 (lower is better) Translates to: ISNPSSVFVYGQ*KTPALLIRTSS Trigger: GCTAGACGTCCTGATCAATAATGCGGGGGTTTTCCACTGCCCGTATACGAAGACTGAAGATGGGTTTGAGAT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000020947.7 |
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| CDS CAA 90 bp | ATATGCCTCCCTAGGTTTGTTCGCACAATACCAGGATGCAGCACATaGACAGTCACGTTTGTTCCTTCTAAGCGACGGGCTAATTCTCTT | + |
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Preference number: 6 (lower is better) Translates to: ICLPRFVRTIPGCST*TVTFVPSKRRANSL Trigger: AAGAGAATTAGCCCGTCGCTTAGAAGGAACAAACGTGACTGTCAATGTGCTGCATCCTGGTATTGTGCGAACAAACCTAGGGAGGCATAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020947.7 |
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| CDS TCA 72 bp | AAGTTTGGAAGAAACGACTACAATCCTGCTGGGAGCTaGACTTTTGAGGAGTCCAAGGAGAAGATTGGTGAG | + |
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Preference number: 6 (lower is better) Translates to: KFGRNDYNPAGS*TFEESKEKIGE Trigger: CTCACCAATCTTCTCCTTGGACTCCTCAAAAGTTCAGCTCCCAGCAGGATTGTAGTCGTTTCTTCCAAACTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020947.7 |
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| CDS TCA 72 bp | ACCAAATTGAAAAGTGGTCTTGCCAGCAGTGGGATGTaGATATGCCTCCCTAGGTTTGTTCGCACAATACCA | + |
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Preference number: 6 (lower is better) Translates to: TKLKSGLASSGM*ICLPRFVRTIP Trigger: TGGTATTGTGCGAACAAACCTAGGGAGGCATATTCACATCCCACTGCTGGCAAGACCACTTTTCAATTTGGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020947.7 |
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| CDS GCA 72 bp | ATATGCCTCCCTAGGTTTGTTCGCACAATACCAGGATaGAGCACATTGACAGTCACGTTTGTTCCTTCTAAG | + |
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Preference number: 6 (lower is better) Translates to: ICLPRFVRTIPG*STLTVTFVPSK Trigger: CTTAGAAGGAACAAACGTGACTGTCAATGTGCTGCATCCTGGTATTGTGCGAACAAACCTAGGGAGGCATAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020947.7 |
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