Pregenerated sensors for RDH12 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000021123Ensembl transcript IDs: ENSMUST00000021548.12, ENSMUST00000122227.8, ENSMUST00000140823.2
Found 71 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CAAAGAAAAAGAGGCCAATCTAGAGCTGGAGGGAATAGAAATGTGTaGTGCCGGTGTCCCTGTGAGCGTGTAAGCTCATGTCAGTGGTAC | + |
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Preference number: 1 (lower is better) Translates to: QRKRGQSRAGGNRNV*CRCPCERVSSCQWY Trigger: GTACCACTGACATGAGCTTACACGCTCACAGGGACACCGGCATCACACATTTCTATTCCCTCCAGCTCTAGATTGGCCTCTTTTTCTTTG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000021548.12 ENSMUST00000122227.8 |
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| 3UTR-3UTR TCA 90 bp | GGGAGGAAACTAATCCAACTTCCCAGGATCCTCTACCACCCCCATGTTCAGCTCTATCATCCTGTACTCTaGCCCTGCCTCACAAAAATG | + |
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Preference number: 2 (lower is better) Translates to: GRKLIQLPRILYHPHVQLYHPVL*PCLTKM Trigger: CATTTTTGTGAGGCAGGGTCAGAGTACAGGATGATA...GAGCTGAACATGGGGGTGGTAGAGGATCCTGGGAAGTTGGATTAGTTTCCTCCC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000021548.12 ENSMUST00000122227.8 |
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| 3UTR-3UTR TCA 90 bp | TCTCTTGCCCCGGAGAGCTGTGGATTCTCTAAGCCTTTGAGAATGAGCTGGAAATATCATCCTGTACTCTaGCCCTGCCTCACAAAAATG | + |
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Preference number: 2 (lower is better) Translates to: SLAPESCGFSKPLRMSWKYHPVL*PCLTKM Trigger: CATTTTTGTGAGGCAGGGTCAGAGTACAGGATGATA...TTTCCAGCTCATTCTCAAAGGCTTAGAGAATCCACAGCTCTCCGGGGCAAGAGA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000021548.12 ENSMUST00000122227.8 |
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| 3UTR-3UTR CCA 90 bp | TTCAAAGAAAAAGAGGCCAATCTAGAGCTGGAGGGAATAGAAATGTGTGATGCCCCTTTGAGAATGAGCTaGAAATGTGACTATCATCCT | + |
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Preference number: 2 (lower is better) Translates to: FKEKEANLELEGIEMCDAPLRMS*KCDYHP Trigger: AGGATGATAGTCACATTTCCAGCTCATTCTCAAAGG...GGCATCACACATTTCTATTCCCTCCAGCTCTAGATTGGCCTCTTTTTCTTTGAA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000021548.12 ENSMUST00000122227.8 |
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| 3UTR-3UTR TCA 90 bp | TTTCATTTCAAAGAAAAAGAGGCCAATCTAGAGCTGGAGGGAATAGAAATGTGTAATGAGCTGGAAATGTaGCTATCATCCTGTACTCTG | + |
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Preference number: 2 (lower is better) Translates to: FHFKEKEANLELEGIEMCNELEM*LSSCTL Trigger: CAGAGTACAGGATGATAGTCACATTTCCAGCTCATT...ACACATTTCTATTCCCTCCAGCTCTAGATTGGCCTCTTTTTCTTTGAAATGAAA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000021548.12 ENSMUST00000122227.8 |
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| 3UTR-3UTR CCA 90 bp | TTTCATTTCAAAGAAAAAGAGGCCAATCTAGAGCTGGAGGGAATAGAAATGTGTCCTTTGAGAATGAGCTaGAAATGTGACTATCATCCT | + |
|
Preference number: 2 (lower is better) Translates to: FHFKEKEANLELEGIEMCPLRMS*KCDYHP Trigger: AGGATGATAGTCACATTTCCAGCTCATTCTCAAAGG...ACACATTTCTATTCCCTCCAGCTCTAGATTGGCCTCTTTTTCTTTGAAATGAAA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000021548.12 ENSMUST00000122227.8 |
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| 3UTR TCA 72 bp | AGAGGCCAATCTAGAGCTGGAGGGAATAGAAATGTGTaGTGCCGGTGTCCCTGTGAGCGTGTAAGCTCATGT | + |
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Preference number: 3 (lower is better) Translates to: RGQSRAGGNRNV*CRCPCERVSSC Trigger: ACATGAGCTTACACGCTCACAGGGACACCGGCATCACACATTTCTATTCCCTCCAGCTCTAGATTGGCCTCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000021548.12 ENSMUST00000122227.8 |
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| 3UTR-3UTR CAA 90 bp | GGGAGGAAACTAATCCAACTTCCCAGGATCCTCTACCACCCCCATGTTCAGCTCTGCCTCACAAAAATGTaGTGTGTATACAGGGTTCCC | + |
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Preference number: 3 (lower is better) Translates to: GRKLIQLPRILYHPHVQLCLTKM*CVYRVP Trigger: GGGAACCCTGTATACACACAACATTTTTGTGAGGCA...GAGCTGAACATGGGGGTGGTAGAGGATCCTGGGAAGTTGGATTAGTTTCCTCCC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000021548.12 ENSMUST00000122227.8 |
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| 3UTR-3UTR CAA 90 bp | GGGAGGAAACTAATCCAACTTCCCAGGATCCTCTACCACCCCCATGTTCAGCTCGGATTCTCTAAGCCTTaGAGAATGAGCTGGAAATGT | + |
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Preference number: 3 (lower is better) Translates to: GRKLIQLPRILYHPHVQLGFSKP*RMSWKC Trigger: ACATTTCCAGCTCATTCTCAAAGGCTTAGAGAATCC...GAGCTGAACATGGGGGTGGTAGAGGATCCTGGGAAGTTGGATTAGTTTCCTCCC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000021548.12 ENSMUST00000122227.8 |
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| 3UTR-3UTR CAA 90 bp | TCTCTTGCCCCGGAGAGCTGTGGATTCTCTAAGCCTTTGAGAATGAGCTGGAAATGCCTCACAAAAATGTaGTGTGTATACAGGGTTCCC | + |
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Preference number: 3 (lower is better) Translates to: SLAPESCGFSKPLRMSWKCLTKM*CVYRVP Trigger: GGGAACCCTGTATACACACAACATTTTTGTGAGGCA...TTTCCAGCTCATTCTCAAAGGCTTAGAGAATCCACAGCTCTCCGGGGCAAGAGA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000021548.12 ENSMUST00000122227.8 |
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| 3UTR-3UTR CAA 90 bp | TTTCATTTCAAAGAAAAAGAGGCCAATCTAGAGCTGGAGGGAATAGAAATGTGTGGATTCTCTAAGCCTTaGAGAATGAGCTGGAAATGT | + |
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Preference number: 3 (lower is better) Translates to: FHFKEKEANLELEGIEMCGFSKP*RMSWKC Trigger: ACATTTCCAGCTCATTCTCAAAGGCTTAGAGAATCC...ACACATTTCTATTCCCTCCAGCTCTAGATTGGCCTCTTTTTCTTTGAAATGAAA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000021548.12 ENSMUST00000122227.8 |
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| CDS-3UTR GCA 90 bp | GGGAGGAAACTAATCCAACTTCCCAGGATCCTCTACCACCCCCATGTTCAGCTCCTCTGGCTGTCTCCTTaGCAATGCCTGTGTTGGCAC | + |
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Preference number: 4 (lower is better) Translates to: GRKLIQLPRILYHPHVQLLWLSP*QCLCWH Trigger: GTGCCAACACAGGCATTGGCAAGGAGACAGCCAGAG...GAGCTGAACATGGGGGTGGTAGAGGATCCTGGGAAGTTGGATTAGTTTCCTCCC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000021548.12 ENSMUST00000122227.8 |
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| CDS-3UTR TCA 90 bp | GGGAGGAAACTAATCCAACTTCCCAGGATCCTCTACCACCCCCATGTTCAGCTCGGTAGGAGTTCCTGGTaGTCTCTGACAATACAACGC | + |
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Preference number: 4 (lower is better) Translates to: GRKLIQLPRILYHPHVQLGRSSW*SLTIQR Trigger: GCGTTGTATTGTCAGAGATCACCAGGAACTCCTACC...GAGCTGAACATGGGGGTGGTAGAGGATCCTGGGAAGTTGGATTAGTTTCCTCCC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000021548.12 ENSMUST00000122227.8 |
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| CDS-3UTR CCA 90 bp | GAGGAAACTAATCCAACTTCCCAGGATCCTCTACCACCCCCATGTTCAGCTCTCTTCGAGCAAGCTCTCTaGCTGTCTCCTTGCCAATGC | + |
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Preference number: 4 (lower is better) Translates to: EETNPTSQDPLPPPCSALFEQAL*LSPCQC Trigger: GCATTGGCAAGGAGACAGCCAGAGAGCTTGCTCGAA...GAGAGCTGAACATGGGGGTGGTAGAGGATCCTGGGAAGTTGGATTAGTTTCCTC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000021548.12 ENSMUST00000122227.8 |
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| CDS-3UTR CCA 90 bp | GGGAGGAAACTAATCCAACTTCCCAGGATCCTCTACCACCCCCATGTTCAGCTCTTCCGCACTAGCACCTaGGAGTTCTTGGTATCTGCT | + |
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Preference number: 4 (lower is better) Translates to: GRKLIQLPRILYHPHVQLFRTST*EFLVSA Trigger: AGCAGATACCAAGAACTCCCAGGTGCTAGTGCGGAA...GAGCTGAACATGGGGGTGGTAGAGGATCCTGGGAAGTTGGATTAGTTTCCTCCC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000021548.12 ENSMUST00000122227.8 |
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| CDS-3UTR CCA 90 bp | GGGAGGAAACTAATCCAACTTCCCAGGATCCTCTACCACCCCCATGTTCAGCTCAGAAAGTGTCCCAGGTaGTTGACTCCAAAGTGGGTC | + |
|
Preference number: 4 (lower is better) Translates to: GRKLIQLPRILYHPHVQLRKCPR*LTPKWV Trigger: GACCCACTTTGGAGTCAACCACCTGGGACACTTTCT...GAGCTGAACATGGGGGTGGTAGAGGATCCTGGGAAGTTGGATTAGTTTCCTCCC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000021548.12 ENSMUST00000122227.8 |
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| CDS-3UTR TCA 90 bp | GAGGAAACTAATCCAACTTCCCAGGATCCTCTACCACCCCCATGTTCAGCTCTCGGTAGGAGTTCCTGGTaGTCTCTGACAATACAACGC | + |
|
Preference number: 4 (lower is better) Translates to: EETNPTSQDPLPPPCSALGRSSW*SLTIQR Trigger: GCGTTGTATTGTCAGAGATCACCAGGAACTCCTACC...GAGAGCTGAACATGGGGGTGGTAGAGGATCCTGGGAAGTTGGATTAGTTTCCTC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000021548.12 ENSMUST00000122227.8 |
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| CDS-3UTR CCA 90 bp | GAGGAAACTAATCCAACTTCCCAGGATCCTCTACCACCCCCATGTTCAGCTCTCAGAAAGTGTCCCAGGTaGTTGACTCCAAAGTGGGTC | + |
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Preference number: 4 (lower is better) Translates to: EETNPTSQDPLPPPCSALRKCPR*LTPKWV Trigger: GACCCACTTTGGAGTCAACCACCTGGGACACTTTCT...GAGAGCTGAACATGGGGGTGGTAGAGGATCCTGGGAAGTTGGATTAGTTTCCTC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000021548.12 ENSMUST00000122227.8 |
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| CDS-3UTR CCA 90 bp | GGGAGGAAACTAATCCAACTTCCCAGGATCCTCTACCACCCCCATGTTCAGCTCTATCGTTTCTGGCCTTaGAGGTCATGGAAACGGATC | + |
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Preference number: 4 (lower is better) Translates to: GRKLIQLPRILYHPHVQLYRFWP*RSWKRI Trigger: GATCCGTTTCCATGACCTCCAAGGCCAGAAACGATA...GAGCTGAACATGGGGGTGGTAGAGGATCCTGGGAAGTTGGATTAGTTTCCTCCC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000021548.12 ENSMUST00000122227.8 |
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| CDS-3UTR TCA 90 bp | TCACAGCAGCAACAAGCCAGGATAATCCTTTCAGATCAACCTTCTCTTTGGTCCGTTCCTGGTGATCTCTaGCAATACAACGCCCGGGTG | + |
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Preference number: 4 (lower is better) Translates to: SQQQQARIILSDQPSLWSVPGDL*QYNARV Trigger: CACCCGGGCGTTGTATTGTCAGAGATCACCAGGAAC...GGACCAAAGAGAAGGTTGATCTGAAAGGATTATCCTGGCTTGTTGCTGCTGTGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000021548.12 ENSMUST00000122227.8 |
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| CDS-3UTR GCA 90 bp | GAGGAAACTAATCCAACTTCCCAGGATCCTCTACCACCCCCATGTTCAGCTCTCGGAGTTCTTGGTATCTaGTCGGATTTCACTAGCAGC | + |
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Preference number: 4 (lower is better) Translates to: EETNPTSQDPLPPPCSALGVLGI*SDFTSS Trigger: GCTGCTAGTGAAATCCGAGCAGATACCAAGAACTCC...GAGAGCTGAACATGGGGGTGGTAGAGGATCCTGGGAAGTTGGATTAGTTTCCTC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000021548.12 ENSMUST00000122227.8 |
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| CDS-3UTR CCA 90 bp | GAGGAAACTAATCCAACTTCCCAGGATCCTCTACCACCCCCATGTTCAGCTCTCAGGCTCGGATGGATTTaGTGTCAGACAGGTCCAATT | + |
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Preference number: 4 (lower is better) Translates to: EETNPTSQDPLPPPCSALRLGWI*CQTGPI Trigger: AATTGGACCTGTCTGACACCAAATCCATCCGAGCCT...GAGAGCTGAACATGGGGGTGGTAGAGGATCCTGGGAAGTTGGATTAGTTTCCTC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000021548.12 ENSMUST00000122227.8 |
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| CDS-3UTR GCA 90 bp | TCTCTTGCCCCGGAGAGCTGTGGATTCTCTAAGCCTTTGAGAATGAGCTGGAAAGGAGTTCTTGGTATCTaGTCGGATTTCACTAGCAGC | + |
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Preference number: 4 (lower is better) Translates to: SLAPESCGFSKPLRMSWKGVLGI*SDFTSS Trigger: GCTGCTAGTGAAATCCGAGCAGATACCAAGAACTCC...TTTCCAGCTCATTCTCAAAGGCTTAGAGAATCCACAGCTCTCCGGGGCAAGAGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000021548.12 ENSMUST00000122227.8 |
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| CDS-3UTR CCA 90 bp | TCTCTTGCCCCGGAGAGCTGTGGATTCTCTAAGCCTTTGAGAATGAGCTGGAAAAGGCTCGGATGGATTTaGTGTCAGACAGGTCCAATT | + |
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Preference number: 4 (lower is better) Translates to: SLAPESCGFSKPLRMSWKRLGWI*CQTGPI Trigger: AATTGGACCTGTCTGACACCAAATCCATCCGAGCCT...TTTCCAGCTCATTCTCAAAGGCTTAGAGAATCCACAGCTCTCCGGGGCAAGAGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000021548.12 ENSMUST00000122227.8 |
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| CDS-3UTR CCA 90 bp | TCTCTTGCCCCGGAGAGCTGTGGATTCTCTAAGCCTTTGAGAATGAGCTGGAAATATCGTTTCTGGCCTTaGAGGTCATGGAAACGGATC | + |
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Preference number: 4 (lower is better) Translates to: SLAPESCGFSKPLRMSWKYRFWP*RSWKRI Trigger: GATCCGTTTCCATGACCTCCAAGGCCAGAAACGATA...TTTCCAGCTCATTCTCAAAGGCTTAGAGAATCCACAGCTCTCCGGGGCAAGAGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000021548.12 ENSMUST00000122227.8 |
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| CDS-3UTR TCA 90 bp | TCACAGCAGCAACAAGCCAGGATAATCCTTTCAGATCAACCTTCTCTTTGGTCCAATCAGGTGAGCTATTaGGGAAAGGTTGACCACCCG | + |
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Preference number: 4 (lower is better) Translates to: SQQQQARIILSDQPSLWSNQVSY*GKVDHP Trigger: CGGGTGGTCAACCTTTCCTCAATAGCTCACCTGATT...GGACCAAAGAGAAGGTTGATCTGAAAGGATTATCCTGGCTTGTTGCTGCTGTGA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000021548.12 ENSMUST00000122227.8 |
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| CDS-3UTR TCA 90 bp | TTCAAAGAAAAAGAGGCCAATCTAGAGCTGGAGGGAATAGAAATGTGTGATGCCGTTCCTGGTGATCTCTaGCAATACAACGCCCGGGTG | + |
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Preference number: 4 (lower is better) Translates to: FKEKEANLELEGIEMCDAVPGDL*QYNARV Trigger: CACCCGGGCGTTGTATTGTCAGAGATCACCAGGAAC...GGCATCACACATTTCTATTCCCTCCAGCTCTAGATTGGCCTCTTTTTCTTTGAA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000021548.12 ENSMUST00000122227.8 |
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| CDS-3UTR TCA 90 bp | TCACAGCAGCAACAAGCCAGGATAATCCTTTCAGATCAACCTTCTCTTTGGTCCTCCTCTTGCAGTCACTaGAGTACTTTCCACTCAGGG | + |
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Preference number: 4 (lower is better) Translates to: SQQQQARIILSDQPSLWSSSCSH*STFHSG Trigger: CCCTGAGTGGAAAGTACTTCAGTGACTGCAAGAGGA...GGACCAAAGAGAAGGTTGATCTGAAAGGATTATCCTGGCTTGTTGCTGCTGTGA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000021548.12 ENSMUST00000122227.8 |
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| CDS-3UTR CCA 90 bp | TCACAGCAGCAACAAGCCAGGATAATCCTTTCAGATCAACCTTCTCTTTGGTCCGCACCTGGGAGTTCTTaGTATCTGCTCGGATTTCAC | + |
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Preference number: 4 (lower is better) Translates to: SQQQQARIILSDQPSLWSAPGSS*YLLGFH Trigger: GTGAAATCCGAGCAGATACCAAGAACTCCCAGGTGC...GGACCAAAGAGAAGGTTGATCTGAAAGGATTATCCTGGCTTGTTGCTGCTGTGA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000021548.12 ENSMUST00000122227.8 |
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| CDS-3UTR CCA 90 bp | TCACAGCAGCAACAAGCCAGGATAATCCTTTCAGATCAACCTTCTCTTTGGTCCTTCCGCACTAGCACCTaGGAGTTCTTGGTATCTGCT | + |
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Preference number: 4 (lower is better) Translates to: SQQQQARIILSDQPSLWSFRTST*EFLVSA Trigger: AGCAGATACCAAGAACTCCCAGGTGCTAGTGCGGAA...GGACCAAAGAGAAGGTTGATCTGAAAGGATTATCCTGGCTTGTTGCTGCTGTGA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000021548.12 ENSMUST00000122227.8 |
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| CDS-3UTR CCA 90 bp | TCACAGCAGCAACAAGCCAGGATAATCCTTTCAGATCAACCTTCTCTTTGGTCCCAGCAAAGGCTCGGATaGATTTGGTGTCAGACAGGT | + |
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Preference number: 4 (lower is better) Translates to: SQQQQARIILSDQPSLWSQQRLG*IWCQTG Trigger: ACCTGTCTGACACCAAATCCATCCGAGCCTTTGCTG...GGACCAAAGAGAAGGTTGATCTGAAAGGATTATCCTGGCTTGTTGCTGCTGTGA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000021548.12 ENSMUST00000122227.8 |
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| CDS-3UTR TCA 90 bp | TTCAAAGAAAAAGAGGCCAATCTAGAGCTGGAGGGAATAGAAATGTGTGATGCCCCTGAGAAGTGGACTTaGAGAAGGGTGAGAAGAGCC | + |
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Preference number: 4 (lower is better) Translates to: FKEKEANLELEGIEMCDAPEKWT*RRVRRA Trigger: GGCTCTTCTCACCCTTCTTCAAGTCCACTTCTCAGG...GGCATCACACATTTCTATTCCCTCCAGCTCTAGATTGGCCTCTTTTTCTTTGAA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000021548.12 ENSMUST00000122227.8 |
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| CDS-3UTR CCA 90 bp | TCTCTTGCCCCGGAGAGCTGTGGATTCTCTAAGCCTTTGAGAATGAGCTGGAAAACCTTCCCTGGGATCTaGACATTTGTTGTACAAACT | + |
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Preference number: 4 (lower is better) Translates to: SLAPESCGFSKPLRMSWKTFPGI*TFVVQT Trigger: AGTTTGTACAACAAATGTCCAGATCCCAGGGAAGGT...TTTCCAGCTCATTCTCAAAGGCTTAGAGAATCCACAGCTCTCCGGGGCAAGAGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000021548.12 ENSMUST00000122227.8 |
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| CDS-3UTR TCA 90 bp | GAGGAAACTAATCCAACTTCCCAGGATCCTCTACCACCCCCATGTTCAGCTCTCTCACTCCTGCATTGTTaGTCAAAATATGAAGCTTCT | + |
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Preference number: 4 (lower is better) Translates to: EETNPTSQDPLPPPCSALSLLHC*SKYEAS Trigger: AGAAGCTTCATATTTTGATCAACAATGCAGGAGTGA...GAGAGCTGAACATGGGGGTGGTAGAGGATCCTGGGAAGTTGGATTAGTTTCCTC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021548.12 |
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| CDS-3UTR TCA 90 bp | TTCAAAGAAAAAGAGGCCAATCTAGAGCTGGAGGGAATAGAAATGTGTGATGCCAATCAGGTGAGCTATTaGGGAAAGGTTGACCACCCG | + |
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Preference number: 4 (lower is better) Translates to: FKEKEANLELEGIEMCDANQVSY*GKVDHP Trigger: CGGGTGGTCAACCTTTCCTCAATAGCTCACCTGATT...GGCATCACACATTTCTATTCCCTCCAGCTCTAGATTGGCCTCTTTTTCTTTGAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000021548.12 ENSMUST00000122227.8 |
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| CDS-3UTR CCA 90 bp | TTCAAAGAAAAAGAGGCCAATCTAGAGCTGGAGGGAATAGAAATGTGTGATGCCCAGCAAAGGCTCGGATaGATTTGGTGTCAGACAGGT | + |
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Preference number: 4 (lower is better) Translates to: FKEKEANLELEGIEMCDAQQRLG*IWCQTG Trigger: ACCTGTCTGACACCAAATCCATCCGAGCCTTTGCTG...GGCATCACACATTTCTATTCCCTCCAGCTCTAGATTGGCCTCTTTTTCTTTGAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000021548.12 ENSMUST00000122227.8 |
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| CDS-3UTR GCA 90 bp | TTTCATTTCAAAGAAAAAGAGGCCAATCTAGAGCTGGAGGGAATAGAAATGTGTCTCTGGCTGTCTCCTTaGCAATGCCTGTGTTGGCAC | + |
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Preference number: 4 (lower is better) Translates to: FHFKEKEANLELEGIEMCLWLSP*QCLCWH Trigger: GTGCCAACACAGGCATTGGCAAGGAGACAGCCAGAG...ACACATTTCTATTCCCTCCAGCTCTAGATTGGCCTCTTTTTCTTTGAAATGAAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000021548.12 ENSMUST00000122227.8 |
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| CDS-3UTR GCA 90 bp | TTTCATTTCAAAGAAAAAGAGGCCAATCTAGAGCTGGAGGGAATAGAAATGTGTGCAGATTGGCCAGCTTaGTGTGGCCATAGGCAAAAG | + |
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Preference number: 4 (lower is better) Translates to: FHFKEKEANLELEGIEMCADWPA*CGHRQK Trigger: CTTTTGCCTATGGCCACAGCAAGCTGGCCAATCTGC...ACACATTTCTATTCCCTCCAGCTCTAGATTGGCCTCTTTTTCTTTGAAATGAAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000021548.12 ENSMUST00000122227.8 |
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| CDS-3UTR CCA 90 bp | TTTCATTTCAAAGAAAAAGAGGCCAATCTAGAGCTGGAGGGAATAGAAATGTGTTTCGAGCAAGCTCTCTaGCTGTCTCCTTGCCAATGC | + |
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Preference number: 4 (lower is better) Translates to: FHFKEKEANLELEGIEMCFEQAL*LSPCQC Trigger: GCATTGGCAAGGAGACAGCCAGAGAGCTTGCTCGAA...ACACATTTCTATTCCCTCCAGCTCTAGATTGGCCTCTTTTTCTTTGAAATGAAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000021548.12 ENSMUST00000122227.8 |
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| CDS-3UTR TCA 90 bp | TTTCATTTCAAAGAAAAAGAGGCCAATCTAGAGCTGGAGGGAATAGAAATGTGTTCCTCTTGCAGTCACTaGAGTACTTTCCACTCAGGG | + |
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Preference number: 4 (lower is better) Translates to: FHFKEKEANLELEGIEMCSSCSH*STFHSG Trigger: CCCTGAGTGGAAAGTACTTCAGTGACTGCAAGAGGA...ACACATTTCTATTCCCTCCAGCTCTAGATTGGCCTCTTTTTCTTTGAAATGAAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000021548.12 ENSMUST00000122227.8 |
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| CDS-3UTR CCA 90 bp | TTCAAAGAAAAAGAGGCCAATCTAGAGCTGGAGGGAATAGAAATGTGTGATGCCACCTTCCCTGGGATCTaGACATTTGTTGTACAAACT | + |
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Preference number: 4 (lower is better) Translates to: FKEKEANLELEGIEMCDATFPGI*TFVVQT Trigger: AGTTTGTACAACAAATGTCCAGATCCCAGGGAAGGT...GGCATCACACATTTCTATTCCCTCCAGCTCTAGATTGGCCTCTTTTTCTTTGAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000021548.12 ENSMUST00000122227.8 |
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| CDS-3UTR CCA 90 bp | TTCAAAGAAAAAGAGGCCAATCTAGAGCTGGAGGGAATAGAAATGTGTGATGCCTGTTGTCTTAGAATATaGGCACATCATCACTCCTGC | + |
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Preference number: 4 (lower is better) Translates to: FKEKEANLELEGIEMCDACCLRI*AHHHSC Trigger: GCAGGAGTGATGATGTGCCCATATTCTAAGACAACA...GGCATCACACATTTCTATTCCCTCCAGCTCTAGATTGGCCTCTTTTTCTTTGAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000021548.12 ENSMUST00000122227.8 |
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| CDS-3UTR CCA 90 bp | TTTCATTTCAAAGAAAAAGAGGCCAATCTAGAGCTGGAGGGAATAGAAATGTGTTGTTGTCTTAGAATATaGGCACATCATCACTCCTGC | + |
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Preference number: 4 (lower is better) Translates to: FHFKEKEANLELEGIEMCCCLRI*AHHHSC Trigger: GCAGGAGTGATGATGTGCCCATATTCTAAGACAACA...ACACATTTCTATTCCCTCCAGCTCTAGATTGGCCTCTTTTTCTTTGAAATGAAA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000021548.12 ENSMUST00000122227.8 |
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| CDS TCA 90 bp | GCCTTGGAGGTCATGGAAACGGATCTTGCCAATCAGGTGAGCTATTaGGGAAAGGTTGACCACCCGTGCGGGAGCAGACTCCTTCAGCCT | + |
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Preference number: 5 (lower is better) Translates to: ALEVMETDLANQVSY*GKVDHPCGSRLLQP Trigger: AGGCTGAAGGAGTCTGCTCCCGCACGGGTGGTCAACCTTTCCTCAATAGCTCACCTGATTGGCAAGATCCGTTTCCATGACCTCCAAGGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000021548.12 ENSMUST00000122227.8 |
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| CDS TCA 90 bp | CGTTTCTGGCCTTGGAGGTCATGGAAACGGATCTTGCCAATCAGGTaGGCTATTGAGGAAAGGTTGACCACCCGTGCGGGAGCAGACTCC | + |
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Preference number: 5 (lower is better) Translates to: RFWPWRSWKRILPIR*AIEERLTTRAGADS Trigger: GGAGTCTGCTCCCGCACGGGTGGTCAACCTTTCCTCAATAGCTCACCTGATTGGCAAGATCCGTTTCCATGACCTCCAAGGCCAGAAACG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000021548.12 ENSMUST00000122227.8 |
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| CDS TCA 90 bp | CATGGAAACGGATCTTGCCAATCAGGTGAGCTATTGAGGAAAGGTTaGCCACCCGTGCGGGAGCAGACTCCTTCAGCCTCTCCAACAGCA | + |
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Preference number: 5 (lower is better) Translates to: HGNGSCQSGELLRKG*PPVREQTPSASPTA Trigger: TGCTGTTGGAGAGGCTGAAGGAGTCTGCTCCCGCACGGGTGGTCAACCTTTCCTCAATAGCTCACCTGATTGGCAAGATCCGTTTCCATG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000021548.12 ENSMUST00000122227.8 |
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| CDS-3UTR CAA 90 bp | TCTCTTGCCCCGGAGAGCTGTGGATTCTCTAAGCCTTTGAGAATGAGCTGGAAATCTTGTTCCGGGCCCTaGAGGATACCCACATCCTCT | + |
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Preference number: 5 (lower is better) Translates to: SLAPESCGFSKPLRMSWKSCSGP*RIPTSS Trigger: AGAGGATGTGGGTATCCTCAAGGGCCCGGAACAAGA...TTTCCAGCTCATTCTCAAAGGCTTAGAGAATCCACAGCTCTCCGGGGCAAGAGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000021548.12 ENSMUST00000122227.8 |
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| CDS TCA 90 bp | GCTGACGTTCCACAATCGCTCAGCTGTTTTCTTGTTCCGGGCCCTTaGGGATACCCACATCCTCTTGCAGTCACTGAAGTACTTTCCACT | + |
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Preference number: 5 (lower is better) Translates to: ADVPQSLSCFLVPGP*GYPHPLAVTEVLST Trigger: AGTGGAAAGTACTTCAGTGACTGCAAGAGGATGTGGGTATCCTCAAGGGCCCGGAACAAGAAAACAGCTGAGCGATTGTGGAACGTCAGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000021548.12 ENSMUST00000122227.8 |
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| CDS-3UTR CAA 90 bp | TCTCTTGCCCCGGAGAGCTGTGGATTCTCTAAGCCTTTGAGAATGAGCTGGAAATTGCCAATGCCTGTGTaGGCACCTGTGATGACCACT | + |
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Preference number: 5 (lower is better) Translates to: SLAPESCGFSKPLRMSWKLPMPV*APVMTT Trigger: AGTGGTCATCACAGGTGCCAACACAGGCATTGGCAA...TTTCCAGCTCATTCTCAAAGGCTTAGAGAATCCACAGCTCTCCGGGGCAAGAGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000021548.12 ENSMUST00000122227.8 |
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| CDS-3UTR CAA 90 bp | GAGGAAACTAATCCAACTTCCCAGGATCCTCTACCACCCCCATGTTCAGCTCTCAGCACCTGGGAGTTCTaGGTATCTGCTCGGATTTCA | + |
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Preference number: 5 (lower is better) Translates to: EETNPTSQDPLPPPCSALSTWEF*VSARIS Trigger: TGAAATCCGAGCAGATACCAAGAACTCCCAGGTGCT...GAGAGCTGAACATGGGGGTGGTAGAGGATCCTGGGAAGTTGGATTAGTTTCCTC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000021548.12 ENSMUST00000122227.8 |
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| CDS-3UTR CAA 90 bp | GAGGAAACTAATCCAACTTCCCAGGATCCTCTACCACCCCCATGTTCAGCTCTCAAGGCTCGGATGGATTaGGTGTCAGACAGGTCCAAT | + |
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Preference number: 5 (lower is better) Translates to: EETNPTSQDPLPPPCSALKARMD*VSDRSN Trigger: ATTGGACCTGTCTGACACCAAATCCATCCGAGCCTT...GAGAGCTGAACATGGGGGTGGTAGAGGATCCTGGGAAGTTGGATTAGTTTCCTC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000021548.12 ENSMUST00000122227.8 |
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| CDS-3UTR CAA 90 bp | GGGAGGAAACTAATCCAACTTCCCAGGATCCTCTACCACCCCCATGTTCAGCTCGGATCTGGACATTTGTaGTACAAACTCCACCAGCAA | + |
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Preference number: 5 (lower is better) Translates to: GRKLIQLPRILYHPHVQLGSGHL*YKLHQQ Trigger: TTGCTGGTGGAGTTTGTACAACAAATGTCCAGATCC...GAGCTGAACATGGGGGTGGTAGAGGATCCTGGGAAGTTGGATTAGTTTCCTCCC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000021548.12 ENSMUST00000122227.8 |
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| CDS-3UTR CAA 90 bp | TCTCTTGCCCCGGAGAGCTGTGGATTCTCTAAGCCTTTGAGAATGAGCTGGAAAGGATCTGGACATTTGTaGTACAAACTCCACCAGCAA | + |
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Preference number: 5 (lower is better) Translates to: SLAPESCGFSKPLRMSWKGSGHL*YKLHQQ Trigger: TTGCTGGTGGAGTTTGTACAACAAATGTCCAGATCC...TTTCCAGCTCATTCTCAAAGGCTTAGAGAATCCACAGCTCTCCGGGGCAAGAGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000021548.12 ENSMUST00000122227.8 |
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| CDS-3UTR CAA 90 bp | TTCAAAGAAAAAGAGGCCAATCTAGAGCTGGAGGGAATAGAAATGTGTGATGCCTTGCCAATGCCTGTGTaGGCACCTGTGATGACCACT | + |
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Preference number: 5 (lower is better) Translates to: FKEKEANLELEGIEMCDALPMPV*APVMTT Trigger: AGTGGTCATCACAGGTGCCAACACAGGCATTGGCAA...GGCATCACACATTTCTATTCCCTCCAGCTCTAGATTGGCCTCTTTTTCTTTGAA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000021548.12 ENSMUST00000122227.8 |
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| CDS CCA 90 bp | GACATTTGTTGTACAAACTCCACCAGCAAAGAACTTCCTGATGGATaGAGCTGTCAGATACAAGATGGAGAGGAAGGACGTAAGCAGTAC | + |
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Preference number: 5 (lower is better) Translates to: DICCTNSTSKELPDG*SCQIQDGEEGRKQY Trigger: GTACTGCTTACGTCCTTCCTCTCCATCTTGTATCTGACAGCTCCATCCATCAGGAAGTTCTTTGCTGGTGGAGTTTGTACAACAAATGTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000021548.12 ENSMUST00000122227.8 |
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| CDS-3UTR CAA 90 bp | TTCAAAGAAAAAGAGGCCAATCTAGAGCTGGAGGGAATAGAAATGTGTGATGCCAAGGCTCGGATGGATTaGGTGTCAGACAGGTCCAAT | + |
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Preference number: 5 (lower is better) Translates to: FKEKEANLELEGIEMCDAKARMD*VSDRSN Trigger: ATTGGACCTGTCTGACACCAAATCCATCCGAGCCTT...GGCATCACACATTTCTATTCCCTCCAGCTCTAGATTGGCCTCTTTTTCTTTGAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000021548.12 ENSMUST00000122227.8 |
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| CDS-3UTR CAA 90 bp | TTTCATTTCAAAGAAAAAGAGGCCAATCTAGAGCTGGAGGGAATAGAAATGTGTTCTCTGGCTGTCTCCTaGCCAATGCCTGTGTTGGCA | + |
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Preference number: 5 (lower is better) Translates to: FHFKEKEANLELEGIEMCSLAVS*PMPVLA Trigger: TGCCAACACAGGCATTGGCAAGGAGACAGCCAGAGA...ACACATTTCTATTCCCTCCAGCTCTAGATTGGCCTCTTTTTCTTTGAAATGAAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000021548.12 ENSMUST00000122227.8 |
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| CDS-3UTR CAA 90 bp | TTTCATTTCAAAGAAAAAGAGGCCAATCTAGAGCTGGAGGGAATAGAAATGTGTTCTTGTTCCGGGCCCTaGAGGATACCCACATCCTCT | + |
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Preference number: 5 (lower is better) Translates to: FHFKEKEANLELEGIEMCSCSGP*RIPTSS Trigger: AGAGGATGTGGGTATCCTCAAGGGCCCGGAACAAGA...ACACATTTCTATTCCCTCCAGCTCTAGATTGGCCTCTTTTTCTTTGAAATGAAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000021548.12 ENSMUST00000122227.8 |
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| CDS-3UTR CAA 90 bp | TTTCATTTCAAAGAAAAAGAGGCCAATCTAGAGCTGGAGGGAATAGAAATGTGTAGCACCTGGGAGTTCTaGGTATCTGCTCGGATTTCA | + |
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Preference number: 5 (lower is better) Translates to: FHFKEKEANLELEGIEMCSTWEF*VSARIS Trigger: TGAAATCCGAGCAGATACCAAGAACTCCCAGGTGCT...ACACATTTCTATTCCCTCCAGCTCTAGATTGGCCTCTTTTTCTTTGAAATGAAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000021548.12 ENSMUST00000122227.8 |
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| CDS TCA 72 bp | GGATCTTGCCAATCAGGTGAGCTATTGAGGAAAGGTTaGCCACCCGTGCGGGAGCAGACTCCTTCAGCCTCT | + |
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Preference number: 6 (lower is better) Translates to: GSCQSGELLRKG*PPVREQTPSAS Trigger: AGAGGCTGAAGGAGTCTGCTCCCGCACGGGTGGTCAACCTTTCCTCAATAGCTCACCTGATTGGCAAGATCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000021548.12 ENSMUST00000122227.8 |
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| CDS TCA 72 bp | AGTGCAGGCTGGTCTGAGCCCCCTGAGAAGTGGACTTaGAGAAGGGTGAGAAGAGCCGCCATAGCAAACACA | + |
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Preference number: 6 (lower is better) Translates to: SAGWSEPPEKWT*RRVRRAAIANT Trigger: TGTGTTTGCTATGGCGGCTCTTCTCACCCTTCTTCAAGTCCACTTCTCAGGGGGCTCAGACCAGCCTGCACT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000021548.12 ENSMUST00000122227.8 |
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| CDS TCA 72 bp | CCTTGGAGGTCATGGAAACGGATCTTGCCAATCAGGTaGGCTATTGAGGAAAGGTTGACCACCCGTGCGGGA | + |
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Preference number: 6 (lower is better) Translates to: PWRSWKRILPIR*AIEERLTTRAG Trigger: TCCCGCACGGGTGGTCAACCTTTCCTCAATAGCTCACCTGATTGGCAAGATCCGTTTCCATGACCTCCAAGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000021548.12 ENSMUST00000122227.8 |
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| CDS GCA 72 bp | TCCCTTCAGCACATCTCGGCAAGCAATGTATACTCGTaGTCCTCTTCGAGCAAGCTCTCTGGCTGTCTCCTT | + |
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Preference number: 6 (lower is better) Translates to: SLQHISASNVYS*SSSSKLSGCLL Trigger: AAGGAGACAGCCAGAGAGCTTGCTCGAAGAGGAGCACGAGTATACATTGCTTGCCGAGATGTGCTGAAGGGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000021548.12 ENSMUST00000122227.8 ENSMUST00000140823.2 |
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| CDS GCA 72 bp | GATTGGCCAGCTTGCTGTGGCCATAGGCAAAAGCACTaGAGTATCGTTTCTGGCCTTGGAGGTCATGGAAAC | + |
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Preference number: 6 (lower is better) Translates to: DWPACCGHRQKH*SIVSGLGGHGN Trigger: GTTTCCATGACCTCCAAGGCCAGAAACGATACTGCAGTGCTTTTGCCTATGGCCACAGCAAGCTGGCCAATC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000021548.12 ENSMUST00000122227.8 |
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| CDS CCA 72 bp | GCCTGTGTTGGCACCTGTGATGACCACTACCTTCCCTaGGATCTGGACATTTGTTGTACAAACTCCACCAGC | + |
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Preference number: 6 (lower is better) Translates to: ACVGTCDDHYLP*DLDICCTNSTS Trigger: GCTGGTGGAGTTTGTACAACAAATGTCCAGATCCCAGGGAAGGTAGTGGTCATCACAGGTGCCAACACAGGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000021548.12 ENSMUST00000122227.8 ENSMUST00000140823.2 |
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| CDS CAA 72 bp | TTCTTGTTCCGGGCCCTTGAGGATACCCACATCCTCTaGCAGTCACTGAAGTACTTTCCACTCAGGGGCTCT | + |
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Preference number: 6 (lower is better) Translates to: FLFRALEDTHIL*QSLKYFPLRGS Trigger: AGAGCCCCTGAGTGGAAAGTACTTCAGTGACTGCAAGAGGATGTGGGTATCCTCAAGGGCCCGGAACAAGAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000021548.12 ENSMUST00000122227.8 |
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| CDS TCA 72 bp | CCACAATCGCTCAGCTGTTTTCTTGTTCCGGGCCCTTaGGGATACCCACATCCTCTTGCAGTCACTGAAGTA | + |
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Preference number: 6 (lower is better) Translates to: PQSLSCFLVPGP*GYPHPLAVTEV Trigger: TACTTCAGTGACTGCAAGAGGATGTGGGTATCCTCAAGGGCCCGGAACAAGAAAACAGCTGAGCGATTGTGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000021548.12 ENSMUST00000122227.8 |
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| CDS CAA 72 bp | GACAGGTCCAATTTCCGCACTAGCACCTGGGAGTTCTaGGTATCTGCTCGGATTTCACTAGCAGCAGACTCT | + |
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Preference number: 6 (lower is better) Translates to: DRSNFRTSTWEF*VSARISLAADS Trigger: AGAGTCTGCTGCTAGTGAAATCCGAGCAGATACCAAGAACTCCCAGGTGCTAGTGCGGAAATTGGACCTGTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000021548.12 ENSMUST00000122227.8 ENSMUST00000140823.2 |
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| CDS CAA 72 bp | GCCATAGGCAAAAGCACTGCAGTATCGTTTCTGGCCTaGGAGGTCATGGAAACGGATCTTGCCAATCAGGTG | + |
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Preference number: 6 (lower is better) Translates to: AIGKSTAVSFLA*EVMETDLANQV Trigger: CACCTGATTGGCAAGATCCGTTTCCATGACCTCCAAGGCCAGAAACGATACTGCAGTGCTTTTGCCTATGGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000021548.12 ENSMUST00000122227.8 |
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| CDS CCA 72 bp | TTGGCACCTGTGATGACCACTACCTTCCCTGGGATCTaGACATTTGTTGTACAAACTCCACCAGCAAAGAAC | + |
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Preference number: 6 (lower is better) Translates to: LAPVMTTTFPGI*TFVVQTPPAKN Trigger: GTTCTTTGCTGGTGGAGTTTGTACAACAAATGTCCAGATCCCAGGGAAGGTAGTGGTCATCACAGGTGCCAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000021548.12 ENSMUST00000122227.8 ENSMUST00000140823.2 |
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| CDS CCA 72 bp | TGTACAAACTCCACCAGCAAAGAACTTCCTGATGGATaGAGCTGTCAGATACAAGATGGAGAGGAAGGACGT | + |
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Preference number: 6 (lower is better) Translates to: CTNSTSKELPDG*SCQIQDGEEGR Trigger: ACGTCCTTCCTCTCCATCTTGTATCTGACAGCTCCATCCATCAGGAAGTTCTTTGCTGGTGGAGTTTGTACA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000021548.12 ENSMUST00000122227.8 |
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