Pregenerated sensors for RDH11 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000066441Ensembl transcript IDs: ENSMUST00000085254.7, ENSMUST00000159500.2, ENSMUST00000161204.8
Found 100 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CCCTGCCTGCCCTTGAGCCAGGCTCCGGGACTCCTGAGGTTCAGCTaGGGTTACAATGGAGTTCTTCAAGGAGAGGATGGTCGGCTCGGA | + |
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Preference number: 1 (lower is better) Translates to: PCLPLSQAPGLLRFS*GYNGVLQGEDGRLG Trigger: TCCGAGCCGACCATCCTCTCCTTGAAGAACTCCATTGTAACCTCAGCTGAACCTCAGGAGTCCCGGAGCCTGGCTCAAGGGCAGGCAGGG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000085254.7 ENSMUST00000161204.8 |
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| 3UTR CCA 90 bp | CTTGAGCCAGGCTCCGGGACTCCTGAGGTTCAGCTGAGGTTACAATaGAGTTCTTCAAGGAGAGGATGGTCGGCTCGGAGGAGCTCCATC | + |
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Preference number: 1 (lower is better) Translates to: LEPGSGTPEVQLRLQ*SSSRRGWSARRSSI Trigger: GATGGAGCTCCTCCGAGCCGACCATCCTCTCCTTGAAGAACTCCATTGTAACCTCAGCTGAACCTCAGGAGTCCCGGAGCCTGGCTCAAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000085254.7 ENSMUST00000161204.8 |
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| 3UTR TCA 90 bp | TATGGAAGTGGATCCTGCCCAGATGGTGTCCCAAAGAAGACAAGTTaGCTATCCTTGATGGGGCCGACTCCTTCAGCTTTTCTAGCAGCA | + |
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Preference number: 1 (lower is better) Translates to: YGSGSCPDGVPKKTS*LSLMGPTPSAFLAA Trigger: TGCTGCTAGAAAAGCTGAAGGAGTCGGCCCCATCAAGGATAGTCAACTTGTCTTCTTTGGGACACCATCTGGGCAGGATCCACTTCCATA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000159500.2 |
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| 3UTR TCA 90 bp | ATGCACCACATTCCTGCAGGGCCTGTGGAGGTAGATGAGGCTGTCTaGTCCTCTAGATCATCTATAACTGAGGTTATAGATGGTTGTGGT | + |
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Preference number: 1 (lower is better) Translates to: MHHIPAGPVEVDEAV*SSRSSITEVIDGCG Trigger: ACCACAACCATCTATAACCTCAGTTATAGATGATCTAGAGGATCAGACAGCCTCATCTACCTCCACAGGCCCTGCAGGAATGTGGTGCAT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000161204.8 |
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| 3UTR CCA 90 bp | TGCCAAAGCCATCTCATAATAGAGGAGTACCGCGTCAATTCAGAATaGACTGTGCCAGGGTGTACAGAGTATGTTGTCACTCCAGAACCT | + |
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Preference number: 1 (lower is better) Translates to: CQSHLIIEEYRVNSE*TVPGCTEYVVTPEP Trigger: AGGTTCTGGAGTGACAACATACTCTGTACACCCTGGCACAGTCCATTCTGAATTGACGCGGTACTCCTCTATTATGAGATGGCTTTGGCA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159500.2 |
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| 3UTR TCA 90 bp | GATTTTTCTTTTAAACTTCTTCCCTGCGGCATCTGTGCTTCTCAGTaGCCGATTACAACACAGATAGTGTCTCCCTTGCTTTGCAACTGT | + |
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Preference number: 1 (lower is better) Translates to: DFSFKLLPCGICASQ*PITTQIVSPLLCNC Trigger: ACAGTTGCAAAGCAAGGGAGACACTATCTGTGTTGTAATCGGTCACTGAGAAGCACAGATGCCGCAGGGAAGAAGTTTAAAAGAAAAATC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000161204.8 |
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| 3UTR TCA 90 bp | TCCTTTCATTACCTCCTTACTAGGCTGAGAAACAGCGGGAGAAAATaGCAGTTTGGCTTTATTTTTATCTCTGCCCTTCAAATCCCACAA | + |
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Preference number: 1 (lower is better) Translates to: SFHYLLTRLRNSGRK*QFGFIFISALQIPQ Trigger: TTGTGGGATTTGAAGGGCAGAGATAAAAATAAAGCCAAACTGTCATTTTCTCCCGCTGTTTCTCAGCCTAGTAAGGAGGTAATGAAAGGA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000161204.8 |
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| 3UTR TCA 90 bp | GACCTATCGTCTCATACCGTTCCTTTCATTACCTCCTTACTAGGCTaGGAAACAGCGGGAGAAAATGACAGTTTGGCTTTATTTTTATCT | + |
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Preference number: 1 (lower is better) Translates to: DLSSHTVPFITSLLG*ETAGENDSLALFLS Trigger: AGATAAAAATAAAGCCAAACTGTCATTTTCTCCCGCTGTTTCTCAGCCTAGTAAGGAGGTAATGAAAGGAACGGTATGAGACGATAGGTC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000161204.8 |
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| 3UTR CAA 90 bp | ACAGCTGACATCCCACAGCCGCCTGGCTATTATCTCATTGCGACCTaGGTAAGAGACCCATGCCAACTGGCAATCACTGAAATGACTGCC | + |
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Preference number: 2 (lower is better) Translates to: TADIPQPPGYYLIAT*VRDPCQLAITEMTA Trigger: GGCAGTCATTTCAGTGATTGCCAGTTGGCATGGGTCTCTTACCAAGGTCGCAATGAGATAATAGCCAGGCGGCTGTGGGATGTCAGCTGT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159500.2 |
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| 3UTR-3UTR TCA 90 bp | ACAATGGAGTTCTTCAAGGAGAGGATGGTCGGCTCGGAGGAGCTCCATCTAATCCAAGCAGGAAAGGCTTaGAGTTCTTCGCTCTTCAGG | + |
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Preference number: 2 (lower is better) Translates to: TMEFFKERMVGSEELHLIQAGKA*SSSLFR Trigger: CCTGAAGAGCGAAGAACTTCAAGCCTTTCCTGCTTG...GATTAGATGGAGCTCCTCCGAGCCGACCATCCTCTCCTTGAAGAACTCCATTGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000085254.7 ENSMUST00000161204.8 |
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| 3UTR-3UTR GCA 90 bp | TTGACTATCCTTGATGGGGCCGACTCCTTCAGCTTTTCTAGCAGCAAATGGGTCCATCTCAAAGCCGTCTaGAGTCTTCGAGTAGGGGCA | + |
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Preference number: 2 (lower is better) Translates to: LTILDGADSFSFSSSKWVHLKAV*SLRVGA Trigger: TGCCCCTACTCGAAGACTGCAGACGGCTTTGAGATG...GACCCATTTGCTGCTAGAAAAGCTGAAGGAGTCGGCCCCATCAAGGATAGTCAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000159500.2 |
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| 3UTR CAA 90 bp | TTATGGAAGTGGATCCTGCCCAGATGGTGTCCCAAAGAAGACAAGTaGACTATCCTTGATGGGGCCGACTCCTTCAGCTTTTCTAGCAGC | + |
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Preference number: 2 (lower is better) Translates to: LWKWILPRWCPKEDK*TILDGADSFSFSSS Trigger: GCTGCTAGAAAAGCTGAAGGAGTCGGCCCCATCAAGGATAGTCAACTTGTCTTCTTTGGGACACCATCTGGGCAGGATCCACTTCCATAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000159500.2 |
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| 3UTR-3UTR GCA 90 bp | GTATGTTGTCACTCCAGAACCTTTCAGCCTCTTGGCCAGCTCCTTAGTGAAGAGTGGTTGACGCCAATGTaGATCTCAAAGCCGTCTGCA | + |
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Preference number: 2 (lower is better) Translates to: VCCHSRTFQPLGQLLSEEWLTPM*ISKPSA Trigger: TGCAGACGGCTTTGAGATGCACATTGGCGTCAACCA...CTCTTCACTAAGGAGCTGGCCAAGAGGCTGAAAGGTTCTGGAGTGACAACATAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159500.2 |
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| 3UTR-3UTR GCA 90 bp | CCCTGCAGGTTATGGAAGTGGATCCTGCCCAGATGGTGTCCCAAAGAAGACAAGATGAGAAGGTGCAGATaGTTTTCCTCAGCTAAGAAG | + |
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Preference number: 2 (lower is better) Translates to: PCRLWKWILPRWCPKEDKMRRCR*FSSAKK Trigger: CTTCTTAGCTGAGGAAAAGCATCTGCACCTTCTCAT...CTTGTCTTCTTTGGGACACCATCTGGGCAGGATCCACTTCCATAACCTGCAGGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000159500.2 |
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| 3UTR-3UTR GCA 90 bp | TACAGAGTATGTTGTCACTCCAGAACCTTTCAGCCTCTTGGCCAGCTCCTTAGTTATGGAAGTGGATCCTaGCCAGATGGTGTCCCAAAG | + |
|
Preference number: 2 (lower is better) Translates to: YRVCCHSRTFQPLGQLLSYGSGS*PDGVPK Trigger: CTTTGGGACACCATCTGGGCAGGATCCACTTCCATA...ACTAAGGAGCTGGCCAAGAGGCTGAAAGGTTCTGGAGTGACAACATACTCTGTA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159500.2 |
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| 3UTR-3UTR GCA 90 bp | CTCATTGCGACCTTGGTAAGAGACCCATGCCAACTGGCAATCACTGAAATGACTATTCAGAATGGACTGTaGCAGGGTGTACAGAGTATG | + |
|
Preference number: 2 (lower is better) Translates to: LIATLVRDPCQLAITEMTIQNGL*QGVQSM Trigger: CATACTCTGTACACCCTGGCACAGTCCATTCTGAAT...AGTCATTTCAGTGATTGCCAGTTGGCATGGGTCTCTTACCAAGGTCGCAATGAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159500.2 |
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| 3UTR-3UTR CCA 90 bp | GGACATAGAAAAGTGTCTCAGAAGCCAAAGCTTCAGACTGCCAGATTTAGTAAAGTACTAGGATTTAACTaGATGCCAAGCAGGAAAGGC | + |
|
Preference number: 2 (lower is better) Translates to: GHRKVSQKPKLQTARFSKVLGFN*MPSRKG Trigger: GCCTTTCCTGCTTGGCATCCAGTTAAATCCTAGTAC...TTTACTAAATCTGGCAGTCTGAAGCTTTGGCTTCTGAGACACTTTTCTATGTCC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000085254.7 ENSMUST00000161204.8 |
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| 3UTR-3UTR CCA 90 bp | AATTTCTTAGAGAAGGAAGCTCTTCAGTGGTCTGGACATAGAAAAGTGTCTCAGCAGCTGAGGTTACAATaGAGTTCTTCAAGGAGAGGA | + |
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Preference number: 2 (lower is better) Translates to: NFLEKEALQWSGHRKVSQQLRLQ*SSSRRG Trigger: TCCTCTCCTTGAAGAACTCCATTGTAACCTCAGCTG...CTGAGACACTTTTCTATGTCCAGACCACTGAAGAGCTTCCTTCTCTAAGAAATT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000085254.7 ENSMUST00000161204.8 |
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| 3UTR-3UTR CCA 90 bp | AATCGTAGTAAATTGAGGCTATCTCTACTTTCTTTTGCAGTGCTGGGATCAAACCAGCTGAGGTTACAATaGAGTTCTTCAAGGAGAGGA | + |
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Preference number: 2 (lower is better) Translates to: NRSKLRLSLLSFAVLGSNQLRLQ*SSSRRG Trigger: TCCTCTCCTTGAAGAACTCCATTGTAACCTCAGCTG...GTTTGATCCCAGCACTGCAAAAGAAAGTAGAGATAGCCTCAATTTACTACGATT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000161204.8 |
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| 3UTR-3UTR TCA 90 bp | AATCGTAGTAAATTGAGGCTATCTCTACTTTCTTTTGCAGTGCTGGGATCAAACAGGTTTTGGCCACTTTaGAGGATAATCATCATCTCC | + |
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Preference number: 2 (lower is better) Translates to: NRSKLRLSLLSFAVLGSNRFWPL*RIIIIS Trigger: GGAGATGATGATTATCCTTCAAAGTGGCCAAAACCT...GTTTGATCCCAGCACTGCAAAAGAAAGTAGAGATAGCCTCAATTTACTACGATT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000161204.8 |
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| 3UTR CCA 72 bp | GGCTCCGGGACTCCTGAGGTTCAGCTGAGGTTACAATaGAGTTCTTCAAGGAGAGGATGGTCGGCTCGGAGG | + |
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Preference number: 3 (lower is better) Translates to: GSGTPEVQLRLQ*SSSRRGWSARR Trigger: CCTCCGAGCCGACCATCCTCTCCTTGAAGAACTCCATTGTAACCTCAGCTGAACCTCAGGAGTCCCGGAGCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000085254.7 ENSMUST00000161204.8 |
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| 3UTR GCA 72 bp | TTTCTTAAGTATCCAGATGTTGGGACCACAAAGCCCTaGCTGCCCTTGAGCCAGGCTCCGGGACTCCTGAGG | + |
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Preference number: 3 (lower is better) Translates to: FLKYPDVGTTKP*LPLSQAPGLLR Trigger: CCTCAGGAGTCCCGGAGCCTGGCTCAAGGGCAGGCAGGGCTTTGTGGTCCCAACATCTGGATACTTAAGAAA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000085254.7 ENSMUST00000161204.8 |
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| 3UTR-3UTR CAA 90 bp | TGTGGCAGTACGCGAGACCCGCACTGTAGAACTTCTCCCCCTGCAGGTTATGGAATCACGCCCGCATTGTaGATGAGAAGGTGCAGATGC | + |
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Preference number: 3 (lower is better) Translates to: CGSTRDPHCRTSPPAGYGITPAL*MRRCRC Trigger: GCATCTGCACCTTCTCATCAACAATGCGGGCGTGAT...TCCATAACCTGCAGGGGGAGAAGTTCTACAGTGCGGGTCTCGCGTACTGCCACA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000159500.2 |
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| 3UTR TCA 72 bp | CCCTTGAGCCAGGCTCCGGGACTCCTGAGGTTCAGCTaGGGTTACAATGGAGTTCTTCAAGGAGAGGATGGT | + |
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Preference number: 3 (lower is better) Translates to: PLSQAPGLLRFS*GYNGVLQGEDG Trigger: ACCATCCTCTCCTTGAAGAACTCCATTGTAACCTCAGCTGAACCTCAGGAGTCCCGGAGCCTGGCTCAAGGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000085254.7 ENSMUST00000161204.8 |
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| 3UTR-3UTR CAA 90 bp | CCCACAGCCGCCTGGCTATTATCTCATTGCGACCTTGGTAAGAGACCCATGCCATCAGCTAAGAAGTCTTaGGCAAAGGCTCGAATAGAC | + |
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Preference number: 3 (lower is better) Translates to: PTAAWLLSHCDLGKRPMPSAKKS*AKARID Trigger: GTCTATTCGAGCCTTTGCCAAAGACTTCTTAGCTGA...TGGCATGGGTCTCTTACCAAGGTCGCAATGAGATAATAGCCAGGCGGCTGTGGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159500.2 |
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| 3UTR TCA 72 bp | GGATCCTGCCCAGATGGTGTCCCAAAGAAGACAAGTTaGCTATCCTTGATGGGGCCGACTCCTTCAGCTTTT | + |
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Preference number: 3 (lower is better) Translates to: GSCPDGVPKKTS*LSLMGPTPSAF Trigger: AAAAGCTGAAGGAGTCGGCCCCATCAAGGATAGTCAACTTGTCTTCTTTGGGACACCATCTGGGCAGGATCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000159500.2 |
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| 3UTR TCA 72 bp | GACCTTGGTAAGAGACCCATGCCAACTGGCAATCACTaGAATGACTGCCACTTAGGCTCTCGAGACCTTCTG | + |
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Preference number: 3 (lower is better) Translates to: DLGKRPMPTGNH*NDCHLGSRDLL Trigger: CAGAAGGTCTCGAGAGCCTAAGTGGCAGTCATTTCAGTGATTGCCAGTTGGCATGGGTCTCTTACCAAGGTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159500.2 |
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| 3UTR-3UTR CAA 90 bp | CCTGCAGGTTATGGAAGTGGATCCTGCCCAGATGGTGTCCCAAAGAAGACAAGTAAGGCTCGAATAGACTaGGTATCAGCTAGGTCCAGT | + |
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Preference number: 3 (lower is better) Translates to: PAGYGSGSCPDGVPKKTSKARID*VSARSS Trigger: ACTGGACCTAGCTGATACCAAGTCTATTCGAGCCTT...ACTTGTCTTCTTTGGGACACCATCTGGGCAGGATCCACTTCCATAACCTGCAGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159500.2 |
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| 3UTR-3UTR CAA 90 bp | GTCACTCCAGAACCTTTCAGCCTCTTGGCCAGCTCCTTAGTGAAGAGAATGTTGATCATCACGCCCGCATaGTTGATGAGAAGGTGCAGA | + |
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Preference number: 3 (lower is better) Translates to: VTPEPFSLLASSLVKRMLIITPA*LMRRCR Trigger: TCTGCACCTTCTCATCAACAATGCGGGCGTGATGAT...CAACATTCTCTTCACTAAGGAGCTGGCCAAGAGGCTGAAAGGTTCTGGAGTGAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159500.2 |
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| 3UTR-3UTR CAA 90 bp | CTCATTGCGACCTTGGTAAGAGACCCATGCCAACTGGCAATCACTGAAATGACTGAACCTTTCAGCCTCTaGGCCAGCTCCTTAGTGAAG | + |
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Preference number: 3 (lower is better) Translates to: LIATLVRDPCQLAITEMTEPFSL*ASSLVK Trigger: CTTCACTAAGGAGCTGGCCAAGAGGCTGAAAGGTTC...AGTCATTTCAGTGATTGCCAGTTGGCATGGGTCTCTTACCAAGGTCGCAATGAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159500.2 |
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| 3UTR-3UTR CAA 90 bp | CTCATAATAGAGGAGTACCGCGTCAATTCAGAATGGACTGTGCCAGGGTGTACACCCAAAGAAGACAAGTaGACTATCCTTGATGGGGCC | + |
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Preference number: 3 (lower is better) Translates to: LIIEEYRVNSEWTVPGCTPKEDK*TILDGA Trigger: GGCCCCATCAAGGATAGTCAACTTGTCTTCTTTGGG...TGTACACCCTGGCACAGTCCATTCTGAATTGACGCGGTACTCCTCTATTATGAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000159500.2 |
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| 3UTR-3UTR CAA 90 bp | TACAGAGTATGTTGTCACTCCAGAACCTTTCAGCCTCTTGGCCAGCTCCTTAGTAGAATGTTGGCTAGTTaGCTGTGGCAGTACGCGAGA | + |
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Preference number: 3 (lower is better) Translates to: YRVCCHSRTFQPLGQLLSRMLAS*LWQYAR Trigger: TCTCGCGTACTGCCACAGCAAACTAGCCAACATTCT...ACTAAGGAGCTGGCCAAGAGGCTGAAAGGTTCTGGAGTGACAACATACTCTGTA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159500.2 |
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| 3UTR CCA 72 bp | GGTTTCGAGGAACCTGGCAGTGTACTAGGATTTAACTaGATGCCAAGCAGGAAAGGCTTGAAGTTCTTCGCT | + |
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Preference number: 3 (lower is better) Translates to: GFEEPGSVLGFN*MPSRKGLKFFA Trigger: AGCGAAGAACTTCAAGCCTTTCCTGCTTGGCATCCAGTTAAATCCTAGTACACTGCCAGGTTCCTCGAAACC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000085254.7 ENSMUST00000161204.8 |
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| 3UTR TCA 72 bp | ATTCCTGCAGGGCCTGTGGAGGTAGATGAGGCTGTCTaGTCCTCTAGATCATCTATAACTGAGGTTATAGAT | + |
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Preference number: 3 (lower is better) Translates to: IPAGPVEVDEAV*SSRSSITEVID Trigger: ATCTATAACCTCAGTTATAGATGATCTAGAGGATCAGACAGCCTCATCTACCTCCACAGGCCCTGCAGGAAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000161204.8 |
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| 3UTR TCA 72 bp | ATCCTCCAAACCAGTGATGGGAACATGAGGGATTCCTaGCACCCTTGGTCTGCATTGCTTTTGATAAAAGCT | + |
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Preference number: 3 (lower is better) Translates to: ILQTSDGNMRDS*HPWSALLLIKA Trigger: AGCTTTTATCAAAAGCAATGCAGACCAAGGGTGTCAGGAATCCCTCATGTTCCCATCACTGGTTTGGAGGAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000161204.8 |
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| 3UTR GCA 72 bp | ATTAAGACAGTGTGCCTTTCTGTAGCTGTCTATTACTaGCTTTCCGTTATGGTTTTAGATCCTCAGCTGACC | + |
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Preference number: 3 (lower is better) Translates to: IKTVCLSVAVYY*LSVMVLDPQLT Trigger: GGTCAGCTGAGGATCTAAAACCATAACGGAAAGGCAGTAATAGACAGCTACAGAAAGGCACACTGTCTTAAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000161204.8 |
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| 3UTR TCA 72 bp | GTTCTTCGCTCTTCAGGTTCAAGGTTTTGGCCACTTTaGAGGATAATCATCATCTCCTCCAATCTTCTTTTG | + |
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Preference number: 3 (lower is better) Translates to: VLRSSGSRFWPL*RIIIISSNLLL Trigger: CAAAAGAAGATTGGAGGAGATGATGATTATCCTTCAAAGTGGCCAAAACCTTGAACCTGAAGAGCGAAGAAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000085254.7 ENSMUST00000161204.8 |
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| 3UTR CCA 72 bp | AATCCCACAAATTTCTTAGAGAAGGAAGCTCTTCAGTaGTCTGGACATAGAAAAGTGTCTCAGAAGCCAAAG | + |
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Preference number: 3 (lower is better) Translates to: NPTNFLEKEALQ*SGHRKVSQKPK Trigger: CTTTGGCTTCTGAGACACTTTTCTATGTCCAGACCACTGAAGAGCTTCCTTCTCTAAGAAATTTGTGGGATT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000085254.7 ENSMUST00000161204.8 |
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| 3UTR-3UTR CAA 90 bp | AATTTCTTAGAGAAGGAAGCTCTTCAGTGGTCTGGACATAGAAAAGTGTCTCAGAAGGTTTTGGCCACTTaGAAGGATAATCATCATCTC | + |
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Preference number: 3 (lower is better) Translates to: NFLEKEALQWSGHRKVSQKVLAT*KDNHHL Trigger: GAGATGATGATTATCCTTCAAAGTGGCCAAAACCTT...CTGAGACACTTTTCTATGTCCAGACCACTGAAGAGCTTCCTTCTCTAAGAAATT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000085254.7 ENSMUST00000161204.8 |
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| 3UTR-3UTR CAA 90 bp | AATTTCTTAGAGAAGGAAGCTCTTCAGTGGTCTGGACATAGAAAAGTGTCTCAGTTCAGGTTCAAGGTTTaGGCCACTTTGAAGGATAAT | + |
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Preference number: 3 (lower is better) Translates to: NFLEKEALQWSGHRKVSQFRFKV*ATLKDN Trigger: ATTATCCTTCAAAGTGGCCAAAACCTTGAACCTGAA...CTGAGACACTTTTCTATGTCCAGACCACTGAAGAGCTTCCTTCTCTAAGAAATT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000085254.7 ENSMUST00000161204.8 |
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| CDS-3UTR TCA 90 bp | GAGGATGGTCGGCTCGGAGGAGCTCCATCTAATCCACATTGTCATGTACCAATCCCAGCAGGTCACAGCTaGCATCCCACAGCCGCCTGG | + |
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Preference number: 4 (lower is better) Translates to: EDGRLGGAPSNPHCHVPIPAGHS*HPTAAW Trigger: CCAGGCGGCTGTGGGATGTCAGCTGTGACCTGCTGG...GATTGGTACATGACAATGTGGATTAGATGGAGCTCCTCCGAGCCGACCATCCTC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000085254.7 ENSMUST00000161204.8 |
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| 3UTR CAA 72 bp | TTCAGCCTCTTGGCCAGCTCCTTAGTGAAGAGAATGTaGGCTAGTTTGCTGTGGCAGTACGCGAGACCCGCA | + |
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Preference number: 4 (lower is better) Translates to: FSLLASSLVKRM*ASLLWQYARPA Trigger: TGCGGGTCTCGCGTACTGCCACAGCAAACTAGCCAACATTCTCTTCACTAAGGAGCTGGCCAAGAGGCTGAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159500.2 |
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| CDS-3UTR CCA 90 bp | GAGGATGGTCGGCTCGGAGGAGCTCCATCTAATCCACATTGTCATGTACCAATCTCCCCCTGCAGGTTATaGAAGTGGATCCTGCCCAGA | + |
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Preference number: 4 (lower is better) Translates to: EDGRLGGAPSNPHCHVPISPCRL*KWILPR Trigger: TCTGGGCAGGATCCACTTCCATAACCTGCAGGGGGA...GATTGGTACATGACAATGTGGATTAGATGGAGCTCCTCCGAGCCGACCATCCTC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000085254.7 ENSMUST00000161204.8 |
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| CDS-3UTR TCA 90 bp | GGTTCAGCTGAGGTTACAATGGAGTTCTTCAAGGAGAGGATGGTCGGCTCGGAGCCAAAGAAGACAAGTTaGCTATCCTTGATGGGGCCG | + |
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Preference number: 4 (lower is better) Translates to: GSAEVTMEFFKERMVGSEPKKTS*LSLMGP Trigger: CGGCCCCATCAAGGATAGTCAACTTGTCTTCTTTGG...CTCCGAGCCGACCATCCTCTCCTTGAAGAACTCCATTGTAACCTCAGCTGAACC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000085254.7 ENSMUST00000161204.8 |
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| CDS-3UTR CCA 90 bp | ACAATGGAGTTCTTCAAGGAGAGGATGGTCGGCTCGGAGGAGCTCCATCTAATCCATCCCACAGCCGCCTaGCTATTATCTCATTGCGAC | + |
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Preference number: 4 (lower is better) Translates to: TMEFFKERMVGSEELHLIHPTAA*LLSHCD Trigger: GTCGCAATGAGATAATAGCCAGGCGGCTGTGGGATG...GATTAGATGGAGCTCCTCCGAGCCGACCATCCTCTCCTTGAAGAACTCCATTGT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000085254.7 ENSMUST00000161204.8 |
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| CDS-3UTR GCA 90 bp | ACAATGGAGTTCTTCAAGGAGAGGATGGTCGGCTCGGAGGAGCTCCATCTAATCTATGGAAGTGGATCCTaGCCAGATGGTGTCCCAAAG | + |
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Preference number: 4 (lower is better) Translates to: TMEFFKERMVGSEELHLIYGSGS*PDGVPK Trigger: CTTTGGGACACCATCTGGGCAGGATCCACTTCCATA...GATTAGATGGAGCTCCTCCGAGCCGACCATCCTCTCCTTGAAGAACTCCATTGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000085254.7 ENSMUST00000161204.8 |
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| CDS-3UTR CCA 90 bp | GAGGATGGTCGGCTCGGAGGAGCTCCATCTAATCCACATTGTCATGTACCAATCTGCAGGTTATGGAAGTaGATCCTGCCCAGATGGTGT | + |
|
Preference number: 4 (lower is better) Translates to: EDGRLGGAPSNPHCHVPICRLWK*ILPRWC Trigger: ACACCATCTGGGCAGGATCCACTTCCATAACCTGCA...GATTGGTACATGACAATGTGGATTAGATGGAGCTCCTCCGAGCCGACCATCCTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000085254.7 ENSMUST00000161204.8 |
||
| 3UTR CAA 72 bp | TGGATCCTGCCCAGATGGTGTCCCAAAGAAGACAAGTaGACTATCCTTGATGGGGCCGACTCCTTCAGCTTT | + |
|
Preference number: 4 (lower is better) Translates to: WILPRWCPKEDK*TILDGADSFSF Trigger: AAAGCTGAAGGAGTCGGCCCCATCAAGGATAGTCAACTTGTCTTCTTTGGGACACCATCTGGGCAGGATCCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000159500.2 |
||
| 3UTR CAA 72 bp | ATCCCACAGCCGCCTGGCTATTATCTCATTGCGACCTaGGTAAGAGACCCATGCCAACTGGCAATCACTGAA | + |
|
Preference number: 4 (lower is better) Translates to: IPQPPGYYLIAT*VRDPCQLAITE Trigger: TTCAGTGATTGCCAGTTGGCATGGGTCTCTTACCAAGGTCGCAATGAGATAATAGCCAGGCGGCTGTGGGAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159500.2 |
||
| CDS-3UTR GCA 90 bp | GCTGGCAGGAGCAGGAACAAAATAAGTCAATACAAACTCAAGGGGTTTCGAGGACATCTCAAAGCCGTCTaGAGTCTTCGAGTAGGGGCA | + |
|
Preference number: 4 (lower is better) Translates to: AGRSRNKISQYKLKGFRGHLKAV*SLRVGA Trigger: TGCCCCTACTCGAAGACTGCAGACGGCTTTGAGATG...TCCTCGAAACCCCTTGAGTTTGTATTGACTTATTTTGTTCCTGCTCCTGCCAGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000085254.7 ENSMUST00000161204.8 |
||
| CDS-3UTR GCA 90 bp | GAGGATGGTCGGCTCGGAGGAGCTCCATCTAATCCACATTGTCATGTACCAATCTGGCTATTATCTCATTaGGACCTTGGTAAGAGACCC | + |
|
Preference number: 4 (lower is better) Translates to: EDGRLGGAPSNPHCHVPIWLLSH*DLGKRP Trigger: GGGTCTCTTACCAAGGTCGCAATGAGATAATAGCCA...GATTGGTACATGACAATGTGGATTAGATGGAGCTCCTCCGAGCCGACCATCCTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000085254.7 ENSMUST00000161204.8 |
||
| CDS-3UTR CCA 90 bp | AACTGGATGCCAAGCAGGAAAGGCTTGAAGTTCTTCGCTCTTCAGGTTCAAGGTTGCAGGTTATGGAAGTaGATCCTGCCCAGATGGTGT | + |
|
Preference number: 4 (lower is better) Translates to: NWMPSRKGLKFFALQVQGCRLWK*ILPRWC Trigger: ACACCATCTGGGCAGGATCCACTTCCATAACCTGCA...ACCTTGAACCTGAAGAGCGAAGAACTTCAAGCCTTTCCTGCTTGGCATCCAGTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000085254.7 ENSMUST00000161204.8 |
||
| CDS-3UTR TCA 90 bp | CTAGGATTTAACTGGATGCCAAGCAGGAAAGGCTTGAAGTTCTTCGCTCTTCAGTGGCAATCACTGAAATaGCTGCCACTTAGGCTCTCG | + |
|
Preference number: 4 (lower is better) Translates to: LGFNWMPSRKGLKFFALQWQSLK*LPLRLS Trigger: CGAGAGCCTAAGTGGCAGTCATTTCAGTGATTGCCA...CTGAAGAGCGAAGAACTTCAAGCCTTTCCTGCTTGGCATCCAGTTAAATCCTAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000085254.7 ENSMUST00000161204.8 |
||
| CDS-3UTR GCA 90 bp | GCTGGCAGGAGCAGGAACAAAATAAGTCAATACAAACTCAAGGGGTTTCGAGGATATGGAAGTGGATCCTaGCCAGATGGTGTCCCAAAG | + |
|
Preference number: 4 (lower is better) Translates to: AGRSRNKISQYKLKGFRGYGSGS*PDGVPK Trigger: CTTTGGGACACCATCTGGGCAGGATCCACTTCCATA...TCCTCGAAACCCCTTGAGTTTGTATTGACTTATTTTGTTCCTGCTCCTGCCAGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000085254.7 ENSMUST00000161204.8 |
||
| CDS-3UTR CCA 90 bp | AGCTGTGTAGGTCACATGAAGGTCCTCTGTCTTAGTGATACCACTAGAAACGCTCGCGTCAATTCAGAATaGACTGTGCCAGGGTGTACA | + |
|
Preference number: 4 (lower is better) Translates to: SCVGHMKVLCLSDTTRNARVNSE*TVPGCT Trigger: TGTACACCCTGGCACAGTCCATTCTGAATTGACGCG...AGCGTTTCTAGTGGTATCACTAAGACAGAGGACCTTCATGTGACCTACACAGCT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000085254.7 ENSMUST00000161204.8 |
||
| CDS-3UTR GCA 90 bp | AAGCTCTTCAGTGGTCTGGACATAGAAAAGTGTCTCAGAAGCCAAAGCTTCAGATGGTTGACGCCAATGTaGATCTCAAAGCCGTCTGCA | + |
|
Preference number: 4 (lower is better) Translates to: KLFSGLDIEKCLRSQSFRWLTPM*ISKPSA Trigger: TGCAGACGGCTTTGAGATGCACATTGGCGTCAACCA...TCTGAAGCTTTGGCTTCTGAGACACTTTTCTATGTCCAGACCACTGAAGAGCTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000085254.7 ENSMUST00000161204.8 |
||
| CDS-3UTR GCA 90 bp | AGCTGTGTAGGTCACATGAAGGTCCTCTGTCTTAGTGATACCACTAGAAACGCTTGGCTATTATCTCATTaGGACCTTGGTAAGAGACCC | + |
|
Preference number: 4 (lower is better) Translates to: SCVGHMKVLCLSDTTRNAWLLSH*DLGKRP Trigger: GGGTCTCTTACCAAGGTCGCAATGAGATAATAGCCA...AGCGTTTCTAGTGGTATCACTAAGACAGAGGACCTTCATGTGACCTACACAGCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000085254.7 ENSMUST00000161204.8 |
||
| CDS-3UTR CCA 90 bp | AGTTCTTCGCTCTTCAGGTTCAAGGTTTTGGCCACTTTGAAGGATAATCATCATCATCCCACAGCCGCCTaGCTATTATCTCATTGCGAC | + |
|
Preference number: 4 (lower is better) Translates to: SSSLFRFKVLATLKDNHHHPTAA*LLSHCD Trigger: GTCGCAATGAGATAATAGCCAGGCGGCTGTGGGATG...ATGATGATTATCCTTCAAAGTGGCCAAAACCTTGAACCTGAAGAGCGAAGAACT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000085254.7 ENSMUST00000161204.8 |
||
| 3UTR CAA 72 bp | GTACTAGGATTTAACTGGATGCCAAGCAGGAAAGGCTaGAAGTTCTTCGCTCTTCAGGTTCAAGGTTTTGGC | + |
|
Preference number: 4 (lower is better) Translates to: VLGFNWMPSRKG*KFFALQVQGFG Trigger: GCCAAAACCTTGAACCTGAAGAGCGAAGAACTTCAAGCCTTTCCTGCTTGGCATCCAGTTAAATCCTAGTAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000085254.7 ENSMUST00000161204.8 |
||
| CDS-3UTR TCA 90 bp | AATGCACAAGAAGACACACAAAATCGACACAATGACAATGAGAAGGCCTTTCCTTGGCAATCACTGAAATaGCTGCCACTTAGGCTCTCG | + |
|
Preference number: 4 (lower is better) Translates to: NAQEDTQNRHNDNEKAFPWQSLK*LPLRLS Trigger: CGAGAGCCTAAGTGGCAGTCATTTCAGTGATTGCCA...AGGAAAGGCCTTCTCATTGTCATTGTGTCGATTTTGTGTGTCTTCTTGTGCATT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000161204.8 |
||
| CDS-3UTR GCA 90 bp | CATAGAAAAGTGTCTCAGAAGCCAAAGCTTCAGACTGCCAGATTTAGTAAAAACCATCTCAAAGCCGTCTaGAGTCTTCGAGTAGGGGCA | + |
|
Preference number: 4 (lower is better) Translates to: HRKVSQKPKLQTARFSKNHLKAV*SLRVGA Trigger: TGCCCCTACTCGAAGACTGCAGACGGCTTTGAGATG...GTTTTTACTAAATCTGGCAGTCTGAAGCTTTGGCTTCTGAGACACTTTTCTATG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000085254.7 ENSMUST00000161204.8 |
||
| CDS-3UTR GCA 90 bp | AAGGAAAATAGGAGCTGTGTAGGTCACATGAAGGTCCTCTGTCTTAGTGATACCATTCAGAATGGACTGTaGCAGGGTGTACAGAGTATG | + |
|
Preference number: 4 (lower is better) Translates to: KENRSCVGHMKVLCLSDTIQNGL*QGVQSM Trigger: CATACTCTGTACACCCTGGCACAGTCCATTCTGAAT...GGTATCACTAAGACAGAGGACCTTCATGTGACCTACACAGCTCCTATTTTCCTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000085254.7 ENSMUST00000161204.8 |
||
| CDS-3UTR CCA 90 bp | ATAGAAAAGTGTCTCAGAAGCCAAAGCTTCAGACTGCCAGATTTAGTAAAAACTTCCCCCTGCAGGTTATaGAAGTGGATCCTGCCCAGA | + |
|
Preference number: 4 (lower is better) Translates to: IEKCLRSQSFRLPDLVKTSPCRL*KWILPR Trigger: TCTGGGCAGGATCCACTTCCATAACCTGCAGGGGGA...AGTTTTTACTAAATCTGGCAGTCTGAAGCTTTGGCTTCTGAGACACTTTTCTAT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000085254.7 ENSMUST00000161204.8 |
||
| CDS-3UTR GCA 90 bp | GAGCAGGAACAAAATAAGTCAATACAAACTCAAGGGGTTTCGAGGAACCTGGCAATGAGAAGGTGCAGATaGTTTTCCTCAGCTAAGAAG | + |
|
Preference number: 4 (lower is better) Translates to: EQEQNKSIQTQGVSRNLAMRRCR*FSSAKK Trigger: CTTCTTAGCTGAGGAAAAGCATCTGCACCTTCTCAT...TGCCAGGTTCCTCGAAACCCCTTGAGTTTGTATTGACTTATTTTGTTCCTGCTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000085254.7 ENSMUST00000161204.8 |
||
| CDS-3UTR TCA 90 bp | ATAGAAAAGTGTCTCAGAAGCCAAAGCTTCAGACTGCCAGATTTAGTAAAAACTCCAAAGAAGACAAGTTaGCTATCCTTGATGGGGCCG | + |
|
Preference number: 4 (lower is better) Translates to: IEKCLRSQSFRLPDLVKTPKKTS*LSLMGP Trigger: CGGCCCCATCAAGGATAGTCAACTTGTCTTCTTTGG...AGTTTTTACTAAATCTGGCAGTCTGAAGCTTTGGCTTCTGAGACACTTTTCTAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000085254.7 ENSMUST00000161204.8 |
||
| CDS-3UTR GCA 90 bp | CCAGATTTAGTAAAAACTTTTCTTAAGTATCCAGATGTTGGGACCACAAAGCCCATTCAGAATGGACTGTaGCAGGGTGTACAGAGTATG | + |
|
Preference number: 4 (lower is better) Translates to: PDLVKTFLKYPDVGTTKPIQNGL*QGVQSM Trigger: CATACTCTGTACACCCTGGCACAGTCCATTCTGAAT...GGGCTTTGTGGTCCCAACATCTGGATACTTAAGAAAAGTTTTTACTAAATCTGG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000085254.7 ENSMUST00000161204.8 |
||
| CDS-3UTR GCA 90 bp | CCAGATTTAGTAAAAACTTTTCTTAAGTATCCAGATGTTGGGACCACAAAGCCCATGAGAAGGTGCAGATaGTTTTCCTCAGCTAAGAAG | + |
|
Preference number: 4 (lower is better) Translates to: PDLVKTFLKYPDVGTTKPMRRCR*FSSAKK Trigger: CTTCTTAGCTGAGGAAAAGCATCTGCACCTTCTCAT...GGGCTTTGTGGTCCCAACATCTGGATACTTAAGAAAAGTTTTTACTAAATCTGG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000085254.7 ENSMUST00000161204.8 |
||
| 3UTR CAA 72 bp | AGTTCTTCGCTCTTCAGGTTCAAGGTTTTGGCCACTTaGAAGGATAATCATCATCTCCTCCAATCTTCTTTT | + |
|
Preference number: 4 (lower is better) Translates to: SSSLFRFKVLAT*KDNHHLLQSSF Trigger: AAAAGAAGATTGGAGGAGATGATGATTATCCTTCAAAGTGGCCAAAACCTTGAACCTGAAGAGCGAAGAACT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000085254.7 ENSMUST00000161204.8 |
||
| 3UTR CAA 72 bp | ATAAAAGCTCTCCAAATAAAGCAGAATCGTAGTAAATaGAGGCTATCTCTACTTTCTTTTGCAGTGCTGGGA | + |
|
Preference number: 4 (lower is better) Translates to: IKALQIKQNRSK*RLSLLSFAVLG Trigger: TCCCAGCACTGCAAAAGAAAGTAGAGATAGCCTCAATTTACTACGATTCTGCTTTATTTGGAGAGCTTTTAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000161204.8 |
||
| CDS TCA 90 bp | TATCAGCTAGGTCCAGTTTCCGTACGAAGACCTGACTGTTCCCTGTaGCGGCTTGGATCTCACGAGCCGCCAGTTCCCCCTTGTCCACAT | + |
|
Preference number: 5 (lower is better) Translates to: YQLGPVSVRRPDCSL*RLGSHEPPVPPCPH Trigger: ATGTGGACAAGGGGGAACTGGCGGCTCGTGAGATCCAAGCCGTCACAGGGAACAGTCAGGTCTTCGTACGGAAACTGGACCTAGCTGATA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000085254.7 ENSMUST00000161204.8 |
||
| CDS TCA 90 bp | CGAATAGACTTGGTATCAGCTAGGTCCAGTTTCCGTACGAAGACCTaGCTGTTCCCTGTGACGGCTTGGATCTCACGAGCCGCCAGTTCC | + |
|
Preference number: 5 (lower is better) Translates to: RIDLVSARSSFRTKT*LFPVTAWISRAASS Trigger: GGAACTGGCGGCTCGTGAGATCCAAGCCGTCACAGGGAACAGTCAGGTCTTCGTACGGAAACTGGACCTAGCTGATACCAAGTCTATTCG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000085254.7 ENSMUST00000161204.8 |
||
| CDS-3UTR CAA 90 bp | AATGGAGTTCTTCAAGGAGAGGATGGTCGGCTCGGAGGAGCTCCATCTAATCCACGTCTGAGCTCCCTCTaGAGGGGTCTTGATGAAAAC | + |
|
Preference number: 5 (lower is better) Translates to: NGVLQGEDGRLGGAPSNPRLSSL*RGLDEN Trigger: GTTTTCATCAAGACCCCTCAAGAGGGAGCTCAGACG...TGGATTAGATGGAGCTCCTCCGAGCCGACCATCCTCTCCTTGAAGAACTCCATT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000085254.7 ENSMUST00000161204.8 |
||
| CDS TCA 90 bp | ATGCCTGTGTTAGCACCAGTGACTATGGCTACCTTCCCGGGAAGCTaGACATTAGATGTGCACACCCCACTGGACAGCATTTTCCTGAGT | + |
|
Preference number: 5 (lower is better) Translates to: MPVLAPVTMATFPGS*TLDVHTPLDSIFLS Trigger: ACTCAGGAAAATGCTGTCCAGTGGGGTGTGCACATCTAATGTTCAGCTTCCCGGGAAGGTAGCCATAGTCACTGGTGCTAACACAGGCAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000085254.7 |
||
| CDS-3UTR CAA 90 bp | ACAAAGAAAAGTTGCCAAAGCCATCTCATAATAGAGGAGTACCGCGTCAATTCAGCCGCCAGTTCCCCCTaGTCCACATCCCGGCAAGCT | + |
|
Preference number: 5 (lower is better) Translates to: TKKSCQSHLIIEEYRVNSAASSP*STSRQA Trigger: AGCTTGCCGGGATGTGGACAAGGGGGAACTGGCGGC...TGAATTGACGCGGTACTCCTCTATTATGAGATGGCTTTGGCAACTTTTCTTTGT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000159500.2 |
||
| CDS-3UTR CAA 90 bp | AATGCACAAGAAGACACACAAAATCGACACAATGACAATGAGAAGGCCTTTCCTGCCGCCAGTTCCCCCTaGTCCACATCCCGGCAAGCT | + |
|
Preference number: 5 (lower is better) Translates to: NAQEDTQNRHNDNEKAFPAASSP*STSRQA Trigger: AGCTTGCCGGGATGTGGACAAGGGGGAACTGGCGGC...AGGAAAGGCCTTCTCATTGTCATTGTGTCGATTTTGTGTGTCTTCTTGTGCATT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000161204.8 |
||
| CDS-3UTR CAA 90 bp | GAGGATGGTCGGCTCGGAGGAGCTCCATCTAATCCACATTGTCATGTACCAATCCCCAAAGAAGACAAGTaGACTATCCTTGATGGGGCC | + |
|
Preference number: 5 (lower is better) Translates to: EDGRLGGAPSNPHCHVPIPKEDK*TILDGA Trigger: GGCCCCATCAAGGATAGTCAACTTGTCTTCTTTGGG...GATTGGTACATGACAATGTGGATTAGATGGAGCTCCTCCGAGCCGACCATCCTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000085254.7 ENSMUST00000161204.8 |
||
| CDS TCA 90 bp | ATGCCTGTGTTAGCACCAGTGACTATGGCTACCTTCCCGGGAAGCTaGACATTAGATGTGCACACCCCACTGGACAGCATTTTCCTGATT | + |
|
Preference number: 5 (lower is better) Translates to: MPVLAPVTMATFPGS*TLDVHTPLDSIFLI Trigger: AATCAGGAAAATGCTGTCCAGTGGGGTGTGCACATCTAATGTTCAGCTTCCCGGGAAGGTAGCCATAGTCACTGGTGCTAACACAGGCAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000161204.8 |
||
| CDS-3UTR CAA 90 bp | AATGGAGTTCTTCAAGGAGAGGATGGTCGGCTCGGAGGAGCTCCATCTAATCCATATCTCATTGCGACCTaGGTAAGAGACCCATGCCAA | + |
|
Preference number: 5 (lower is better) Translates to: NGVLQGEDGRLGGAPSNPYLIAT*VRDPCQ Trigger: TTGGCATGGGTCTCTTACCAAGGTCGCAATGAGATA...TGGATTAGATGGAGCTCCTCCGAGCCGACCATCCTCTCCTTGAAGAACTCCATT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000085254.7 ENSMUST00000161204.8 |
||
| CDS-3UTR CAA 90 bp | ATAGAAAAGTGTCTCAGAAGCCAAAGCTTCAGACTGCCAGATTTAGTAAAAACTGCCGCCAGTTCCCCCTaGTCCACATCCCGGCAAGCT | + |
|
Preference number: 5 (lower is better) Translates to: IEKCLRSQSFRLPDLVKTAASSP*STSRQA Trigger: AGCTTGCCGGGATGTGGACAAGGGGGAACTGGCGGC...AGTTTTTACTAAATCTGGCAGTCTGAAGCTTTGGCTTCTGAGACACTTTTCTAT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000085254.7 ENSMUST00000161204.8 |
||
| CDS-3UTR CAA 90 bp | ACAATGGAGTTCTTCAAGGAGAGGATGGTCGGCTCGGAGGAGCTCCATCTAATCTCAGCTAAGAAGTCTTaGGCAAAGGCTCGAATAGAC | + |
|
Preference number: 5 (lower is better) Translates to: TMEFFKERMVGSEELHLISAKKS*AKARID Trigger: GTCTATTCGAGCCTTTGCCAAAGACTTCTTAGCTGA...GATTAGATGGAGCTCCTCCGAGCCGACCATCCTCTCCTTGAAGAACTCCATTGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000085254.7 ENSMUST00000161204.8 |
||
| CDS-3UTR CAA 90 bp | ACAATGGAGTTCTTCAAGGAGAGGATGGTCGGCTCGGAGGAGCTCCATCTAATCTTAGTGAAGAGAATGTaGGCTAGTTTGCTGTGGCAG | + |
|
Preference number: 5 (lower is better) Translates to: TMEFFKERMVGSEELHLILVKRM*ASLLWQ Trigger: CTGCCACAGCAAACTAGCCAACATTCTCTTCACTAA...GATTAGATGGAGCTCCTCCGAGCCGACCATCCTCTCCTTGAAGAACTCCATTGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000085254.7 ENSMUST00000161204.8 |
||
| CDS-3UTR CAA 90 bp | GGCAGTGTACTAGGATTTAACTGGATGCCAAGCAGGAAAGGCTTGAAGTTCTTCCGTCTGAGCTCCCTCTaGAGGGGTCTTGATGAAAAC | + |
|
Preference number: 5 (lower is better) Translates to: GSVLGFNWMPSRKGLKFFRLSSL*RGLDEN Trigger: GTTTTCATCAAGACCCCTCAAGAGGGAGCTCAGACG...GAAGAACTTCAAGCCTTTCCTGCTTGGCATCCAGTTAAATCCTAGTACACTGCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000085254.7 ENSMUST00000161204.8 |
||
| CDS-3UTR CAA 90 bp | AAGCTCTTCAGTGGTCTGGACATAGAAAAGTGTCTCAGAAGCCAAAGCTTCAGACCCAAAGAAGACAAGTaGACTATCCTTGATGGGGCC | + |
|
Preference number: 5 (lower is better) Translates to: KLFSGLDIEKCLRSQSFRPKEDK*TILDGA Trigger: GGCCCCATCAAGGATAGTCAACTTGTCTTCTTTGGG...TCTGAAGCTTTGGCTTCTGAGACACTTTTCTATGTCCAGACCACTGAAGAGCTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000085254.7 ENSMUST00000161204.8 |
||
| CDS-3UTR CAA 90 bp | AAGCTCTTCAGTGGTCTGGACATAGAAAAGTGTCTCAGAAGCCAAAGCTTCAGAAAGGCTCGAATAGACTaGGTATCAGCTAGGTCCAGT | + |
|
Preference number: 5 (lower is better) Translates to: KLFSGLDIEKCLRSQSFRKARID*VSARSS Trigger: ACTGGACCTAGCTGATACCAAGTCTATTCGAGCCTT...TCTGAAGCTTTGGCTTCTGAGACACTTTTCTATGTCCAGACCACTGAAGAGCTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000085254.7 ENSMUST00000161204.8 |
||
| CDS-3UTR CAA 90 bp | AGTGATACCACTAGAAACGCTGGCAGGAGCAGGAACAAAATAAGTCAATACAAAATCACGCCCGCATTGTaGATGAGAAGGTGCAGATGC | + |
|
Preference number: 5 (lower is better) Translates to: SDTTRNAGRSRNKISQYKITPAL*MRRCRC Trigger: GCATCTGCACCTTCTCATCAACAATGCGGGCGTGAT...TTTGTATTGACTTATTTTGTTCCTGCTCCTGCCAGCGTTTCTAGTGGTATCACT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000085254.7 ENSMUST00000161204.8 |
||
| CDS-3UTR CAA 90 bp | TCTGGACATAGAAAAGTGTCTCAGAAGCCAAAGCTTCAGACTGCCAGATTTAGTATCATCACGCCCGCATaGTTGATGAGAAGGTGCAGA | + |
|
Preference number: 5 (lower is better) Translates to: SGHRKVSQKPKLQTARFSIITPA*LMRRCR Trigger: TCTGCACCTTCTCATCAACAATGCGGGCGTGATGAT...ACTAAATCTGGCAGTCTGAAGCTTTGGCTTCTGAGACACTTTTCTATGTCCAGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000085254.7 ENSMUST00000161204.8 |
||
| CDS-3UTR CAA 90 bp | CTTTCTGTAGCTGTCTATTACTGCCTTTCCGTTATGGTTTTAGATCCTCAGCTGAGAATGTTGGCTAGTTaGCTGTGGCAGTACGCGAGA | + |
|
Preference number: 5 (lower is better) Translates to: LSVAVYYCLSVMVLDPQLRMLAS*LWQYAR Trigger: TCTCGCGTACTGCCACAGCAAACTAGCCAACATTCT...CAGCTGAGGATCTAAAACCATAACGGAAAGGCAGTAATAGACAGCTACAGAAAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000161204.8 |
||
| CDS-3UTR CAA 90 bp | GGACATAGAAAAGTGTCTCAGAAGCCAAAGCTTCAGACTGCCAGATTTAGTAAAGAACCTTTCAGCCTCTaGGCCAGCTCCTTAGTGAAG | + |
|
Preference number: 5 (lower is better) Translates to: GHRKVSQKPKLQTARFSKEPFSL*ASSLVK Trigger: CTTCACTAAGGAGCTGGCCAAGAGGCTGAAAGGTTC...TTTACTAAATCTGGCAGTCTGAAGCTTTGGCTTCTGAGACACTTTTCTATGTCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000085254.7 ENSMUST00000161204.8 |
||
| CDS-3UTR CAA 90 bp | AATTTCTTAGAGAAGGAAGCTCTTCAGTGGTCTGGACATAGAAAAGTGTCTCAGGAACCTTTCAGCCTCTaGGCCAGCTCCTTAGTGAAG | + |
|
Preference number: 5 (lower is better) Translates to: NFLEKEALQWSGHRKVSQEPFSL*ASSLVK Trigger: CTTCACTAAGGAGCTGGCCAAGAGGCTGAAAGGTTC...CTGAGACACTTTTCTATGTCCAGACCACTGAAGAGCTTCCTTCTCTAAGAAATT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000085254.7 ENSMUST00000161204.8 |
||
| CDS-3UTR CAA 90 bp | GGACATAGAAAAGTGTCTCAGAAGCCAAAGCTTCAGACTGCCAGATTTAGTAAAAAGGCTCGAATAGACTaGGTATCAGCTAGGTCCAGT | + |
|
Preference number: 5 (lower is better) Translates to: GHRKVSQKPKLQTARFSKKARID*VSARSS Trigger: ACTGGACCTAGCTGATACCAAGTCTATTCGAGCCTT...TTTACTAAATCTGGCAGTCTGAAGCTTTGGCTTCTGAGACACTTTTCTATGTCC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000085254.7 ENSMUST00000161204.8 |
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| CDS-3UTR CAA 90 bp | TTCAGACTGCCAGATTTAGTAAAAACTTTTCTTAAGTATCCAGATGTTGGGACCATCACGCCCGCATTGTaGATGAGAAGGTGCAGATGC | + |
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Preference number: 5 (lower is better) Translates to: FRLPDLVKTFLKYPDVGTITPAL*MRRCRC Trigger: GCATCTGCACCTTCTCATCAACAATGCGGGCGTGAT...GGTCCCAACATCTGGATACTTAAGAAAAGTTTTTACTAAATCTGGCAGTCTGAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000085254.7 ENSMUST00000161204.8 |
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| CDS-3UTR CAA 90 bp | AAGGTTTTGGCCACTTTGAAGGATAATCATCATCTCCTCCAATCTTCTTTTGAGATCATCACGCCCGCATaGTTGATGAGAAGGTGCAGA | + |
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Preference number: 5 (lower is better) Translates to: KVLATLKDNHHLLQSSFEIITPA*LMRRCR Trigger: TCTGCACCTTCTCATCAACAATGCGGGCGTGATGAT...CTCAAAAGAAGATTGGAGGAGATGATGATTATCCTTCAAAGTGGCCAAAACCTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000085254.7 ENSMUST00000161204.8 |
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| CDS-3UTR CAA 90 bp | CCAGATTTAGTAAAAACTTTTCTTAAGTATCCAGATGTTGGGACCACAAAGCCCAGAATGTTGGCTAGTTaGCTGTGGCAGTACGCGAGA | + |
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Preference number: 5 (lower is better) Translates to: PDLVKTFLKYPDVGTTKPRMLAS*LWQYAR Trigger: TCTCGCGTACTGCCACAGCAAACTAGCCAACATTCT...GGGCTTTGTGGTCCCAACATCTGGATACTTAAGAAAAGTTTTTACTAAATCTGG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000085254.7 ENSMUST00000161204.8 |
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| CDS-3UTR CAA 90 bp | AGTTCTTCGCTCTTCAGGTTCAAGGTTTTGGCCACTTTGAAGGATAATCATCATTATCTCATTGCGACCTaGGTAAGAGACCCATGCCAA | + |
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Preference number: 5 (lower is better) Translates to: SSSLFRFKVLATLKDNHHYLIAT*VRDPCQ Trigger: TTGGCATGGGTCTCTTACCAAGGTCGCAATGAGATA...ATGATGATTATCCTTCAAAGTGGCCAAAACCTTGAACCTGAAGAGCGAAGAACT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000085254.7 ENSMUST00000161204.8 |
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| CDS-3UTR CAA 90 bp | AGTTCTTCGCTCTTCAGGTTCAAGGTTTTGGCCACTTTGAAGGATAATCATCATTTAGTGAAGAGAATGTaGGCTAGTTTGCTGTGGCAG | + |
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Preference number: 5 (lower is better) Translates to: SSSLFRFKVLATLKDNHHLVKRM*ASLLWQ Trigger: CTGCCACAGCAAACTAGCCAACATTCTCTTCACTAA...ATGATGATTATCCTTCAAAGTGGCCAAAACCTTGAACCTGAAGAGCGAAGAACT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000085254.7 ENSMUST00000161204.8 |
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| CDS-3UTR CAA 90 bp | ATAGAAAAGTGTCTCAGAAGCCAAAGCTTCAGACTGCCAGATTTAGTAAAAACTTCAGCTAAGAAGTCTTaGGCAAAGGCTCGAATAGAC | + |
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Preference number: 5 (lower is better) Translates to: IEKCLRSQSFRLPDLVKTSAKKS*AKARID Trigger: GTCTATTCGAGCCTTTGCCAAAGACTTCTTAGCTGA...AGTTTTTACTAAATCTGGCAGTCTGAAGCTTTGGCTTCTGAGACACTTTTCTAT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000085254.7 ENSMUST00000161204.8 |
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| CDS TCA 72 bp | GGTCCAGTTTCCGTACGAAGACCTGACTGTTCCCTGTaGCGGCTTGGATCTCACGAGCCGCCAGTTCCCCCT | + |
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Preference number: 6 (lower is better) Translates to: GPVSVRRPDCSL*RLGSHEPPVPP Trigger: AGGGGGAACTGGCGGCTCGTGAGATCCAAGCCGTCACAGGGAACAGTCAGGTCTTCGTACGGAAACTGGACC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000085254.7 ENSMUST00000161204.8 |
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| CDS CAA 72 bp | GTGACGGCTTGGATCTCACGAGCCGCCAGTTCCCCCTaGTCCACATCCCGGCAAGCTAAATACACACGGGCT | + |
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Preference number: 6 (lower is better) Translates to: VTAWISRAASSP*STSRQAKYTRA Trigger: AGCCCGTGTGTATTTAGCTTGCCGGGATGTGGACAAGGGGGAACTGGCGGCTCGTGAGATCCAAGCCGTCAC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000085254.7 ENSMUST00000161204.8 |
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| CDS CAA 90 bp | CTGTTCCCTGTGACGGCTTGGATCTCACGAGCCGCCAGTTCCCCCTaGTCCACATCCCGGCAAGCTAAATACACACGGGCTCCTCTTTGG | + |
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Preference number: 6 (lower is better) Translates to: LFPVTAWISRAASSP*STSRQAKYTRAPLW Trigger: CCAAAGAGGAGCCCGTGTGTATTTAGCTTGCCGGGATGTGGACAAGGGGGAACTGGCGGCTCGTGAGATCCAAGCCGTCACAGGGAACAG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000085254.7 ENSMUST00000161204.8 |
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| CDS TCA 72 bp | TTAGCACCAGTGACTATGGCTACCTTCCCGGGAAGCTaGACATTAGATGTGCACACCCCACTGGACAGCATT | + |
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Preference number: 6 (lower is better) Translates to: LAPVTMATFPGS*TLDVHTPLDSI Trigger: AATGCTGTCCAGTGGGGTGTGCACATCTAATGTTCAGCTTCCCGGGAAGGTAGCCATAGTCACTGGTGCTAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000085254.7 ENSMUST00000161204.8 |
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