Pregenerated sensors for RDH10 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000025921Ensembl transcript IDs: ENSMUST00000027053.8
Found 59 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GTGTCCTGTAGACAAGATCCCCCACTTCCTCCCCTAACACAAGTTTaGAGCTCCGTGAGGAAAGGGCACTTTCTATATGCAGCAAGATTC | + |
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Preference number: 1 (lower is better) Translates to: VSCRQDPPLPPLTQV*SSVRKGHFLYAARF Trigger: GAATCTTGCTGCATATAGAAAGTGCCCTTTCCTCACGGAGCTGCAAACTTGTGTTAGGGGAGGAAGTGGGGGATCTTGTCTACAGGACAC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027053.8 |
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| 3UTR CCA 90 bp | ATCAAGCAGCAGGTGGTAAATTCAGTCTTACACTGCCTCAAGGCATaGTTGGTTGTCATTCCTAATGAGAAGTCCAAACGCATAATAAAG | + |
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Preference number: 1 (lower is better) Translates to: IKQQVVNSVLHCLKA*LVVIPNEKSKRIIK Trigger: CTTTATTATGCGTTTGGACTTCTCATTAGGAATGACAACCAACCATGCCTTGAGGCAGTGTAAGACTGAATTTACCACCTGCTGCTTGAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027053.8 |
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| 3UTR-3UTR TCA 90 bp | ACTAATACAGGCAGTGGAATAACAGAGACAACCACACTAATACAGGCAGTGGGGTACACTGTCGGTCCTTaGATGCTGGCTGGGCTTCCA | + |
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Preference number: 2 (lower is better) Translates to: TNTGSGITETTTLIQAVGYTVGP*MLAGLP Trigger: TGGAAGCCCAGCCAGCATTCAAGGACCGACAGTGTA...CCCCACTGCCTGTATTAGTGTGGTTGTCTCTGTTATTCCACTGCCTGTATTAGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027053.8 |
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| 3UTR CAA 90 bp | GGCAGTGGAGTAACAGAGACACCCACACTAATACAGGCAGTGGGGTaGTTCTCTCTTCCCATTTCTAAACAAGCTCTTGGTGAAGAACCT | + |
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Preference number: 2 (lower is better) Translates to: GSGVTETPTLIQAVG*FSLPISKQALGEEP Trigger: AGGTTCTTCACCAAGAGCTTGTTTAGAAATGGGAAGAGAGAACAACCCCACTGCCTGTATTAGTGTGGGTGTCTCTGTTACTCCACTGCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027053.8 |
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| 3UTR-3UTR GCA 90 bp | CAAGTACGGGGACTTTTTAATCAGAAATTCCCATTATCTCTGTGGAGCTGCTGTCAAGCCACCCAGGCTTaGAGGAGAAGAACCGAGAAC | + |
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Preference number: 2 (lower is better) Translates to: QVRGLFNQKFPLSLWSCCQATQA*RRRTEN Trigger: GTTCTCGGTTCTTCTCCTGCAAGCCTGGGTGGCTTG...ACAGCAGCTCCACAGAGATAATGGGAATTTCTGATTAAAAAGTCCCCGTACTTG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027053.8 |
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| 3UTR-3UTR TCA 90 bp | CCCATTCAAACATTTTCTTTGAGTAAGCAGGATAAGATAGGCAGGGGAAGACCTTGGTGGCCTTCATTGTaGTGCTCAGACTACGCTGAT | + |
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Preference number: 2 (lower is better) Translates to: PIQTFSLSKQDKIGRGRPWWPSL*CSDYAD Trigger: ATCAGCGTAGTCTGAGCATCACAATGAAGGCCACCA...AGGTCTTCCCCTGCCTATCTTATCCTGCTTACTCAAAGAAAATGTTTGAATGGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027053.8 |
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| 3UTR-3UTR GCA 90 bp | ACAGAAGACACCCACACTAATACAGGCAGTGGGGTAACAGAGACACCCACACTACTAGAGATTGGAGTATaGAAAACCCACCCTAATTAT | + |
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Preference number: 2 (lower is better) Translates to: TEDTHTNTGSGVTETPTLLEIGV*KTHPNY Trigger: ATAATTAGGGTGGGTTTTGCATACTCCAATCTCTAG...TAGTGTGGGTGTCTCTGTTACCCCACTGCCTGTATTAGTGTGGGTGTCTTCTGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027053.8 |
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| 3UTR-3UTR CCA 90 bp | CCCATTCAAACATTTTCTTTGAGTAAGCAGGATAAGATAGGCAGGGGAAGACCTTCCTTGAATGCTGGCTaGGCTTCCACGATAATGAAT | + |
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Preference number: 2 (lower is better) Translates to: PIQTFSLSKQDKIGRGRPSLNAG*ASTIMN Trigger: ATTCATTATCGTGGAAGCCCAGCCAGCATTCAAGGA...AGGTCTTCCCCTGCCTATCTTATCCTGCTTACTCAAAGAAAATGTTTGAATGGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027053.8 |
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| 3UTR-3UTR CCA 90 bp | AGGTTTATTGAACTTGGAGATGGACCATTTTATAAGGGCCAAACCAAACAAAAAGGTGAGACTAGAGATTaGAGTATGCAAAACCCACCC | + |
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Preference number: 2 (lower is better) Translates to: RFIELGDGPFYKGQTKQKGETRD*SMQNPP Trigger: GGGTGGGTTTTGCATACTCCAATCTCTAGTCTCACC...TTTTTGTTTGGTTTGGCCCTTATAAAATGGTCCATCTCCAAGTTCAATAAACCT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000027053.8 |
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| 3UTR-3UTR CAA 90 bp | TTGAGTAAGCAGGATAAGATAGGCAGGGGAAGACCTCAGAATGCTTTGCCTTATCTACACTGTCGGTCCTaGAATGCTGGCTGGGCTTCC | + |
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Preference number: 3 (lower is better) Translates to: LSKQDKIGRGRPQNALPYLHCRS*NAGWAS Trigger: GGAAGCCCAGCCAGCATTCAAGGACCGACAGTGTAG...ATAAGGCAAAGCATTCTGAGGTCTTCCCCTGCCTATCTTATCCTGCTTACTCAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027053.8 |
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| 3UTR GCA 72 bp | AAAATCCACAGACACCATAAGCAAGCCACCCAGGCTTaGAGGAGAAGAACCGAGAACACAACAGAGCACTAC | + |
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Preference number: 3 (lower is better) Translates to: KIHRHHKQATQA*RRRTENTTEHY Trigger: GTAGTGCTCTGTTGTGTTCTCGGTTCTTCTCCTGCAAGCCTGGGTGGCTTGCTTATGGTGTCTGTGGATTTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027053.8 |
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| 3UTR TCA 72 bp | GTCCTTGAATGCTGGCTGGGCTTCCACGATAATGAATaGATCAATTCTGTGGGGACCCACGTGAAACACACT | + |
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Preference number: 3 (lower is better) Translates to: VLECWLGFHDNE*INSVGTHVKHT Trigger: AGTGTGTTTCACGTGGGTCCCCACAGAATTGATTCATTCATTATCGTGGAAGCCCAGCCAGCATTCAAGGAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027053.8 |
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| 3UTR-3UTR CAA 90 bp | AACAGAGACACCCACACTAATACAGGCAGTGGGATAACAGAGACACCCACACTAATACAGGCAGTGGGGTaGTTCTCTCTTCCCATTTCT | + |
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Preference number: 3 (lower is better) Translates to: NRDTHTNTGSGITETPTLIQAVG*FSLPIS Trigger: AGAAATGGGAAGAGAGAACAACCCCACTGCCTGTAT...TAGTGTGGGTGTCTCTGTTATCCCACTGCCTGTATTAGTGTGGGTGTCTCTGTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027053.8 |
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| 3UTR CCA 72 bp | AACAGAGCACTACACTGTCGGTCCTTGAATGCTGGCTaGGCTTCCACGATAATGAATGAATCAATTCTGTGG | + |
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Preference number: 3 (lower is better) Translates to: NRALHCRSLNAG*ASTIMNESILW Trigger: CCACAGAATTGATTCATTCATTATCGTGGAAGCCCAGCCAGCATTCAAGGACCGACAGTGTAGTGCTCTGTT 47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027053.8 |
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| 3UTR-3UTR CAA 90 bp | ACAGAAGACACCCACACTAATACAGGCAGTGGGGTAACAGAGACACCCACACTAAGACCTCAGAATGCTTaGCCTTATAATGAGGTTGAT | + |
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Preference number: 3 (lower is better) Translates to: TEDTHTNTGSGVTETPTLRPQNA*PYNEVD Trigger: ATCAACCTCATTATAAGGCAAAGCATTCTGAGGTCT...TAGTGTGGGTGTCTCTGTTACCCCACTGCCTGTATTAGTGTGGGTGTCTTCTGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027053.8 |
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| 3UTR CCA 72 bp | CAGGTGGTAAATTCAGTCTTACACTGCCTCAAGGCATaGTTGGTTGTCATTCCTAATGAGAAGTCCAAACGC | + |
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Preference number: 3 (lower is better) Translates to: QVVNSVLHCLKA*LVVIPNEKSKR Trigger: GCGTTTGGACTTCTCATTAGGAATGACAACCAACCATGCCTTGAGGCAGTGTAAGACTGAATTTACCACCTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027053.8 |
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| 3UTR GCA 72 bp | AAAATCAAGCAGCAGGTGGTAAATTCAGTCTTACACTaGCTCAAGGCATGGTTGGTTGTCATTCCTAATGAG | + |
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Preference number: 3 (lower is better) Translates to: KIKQQVVNSVLH*LKAWLVVIPNE Trigger: CTCATTAGGAATGACAACCAACCATGCCTTGAGGCAGTGTAAGACTGAATTTACCACCTGCTGCTTGATTTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027053.8 |
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| 3UTR GCA 72 bp | TACTATAGGCAGATGGTGAGACTAGAGATTGGAGTATaGAAAACCCACCCTAATTATGACCCCATTCAAACA | + |
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Preference number: 3 (lower is better) Translates to: YYRQMVRLEIGV*KTHPNYDPIQT Trigger: TGTTTGAATGGGGTCATAATTAGGGTGGGTTTTGCATACTCCAATCTCTAGTCTCACCATCTGCCTATAGTA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027053.8 |
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| CDS-3UTR TCA 90 bp | GAACACAACAGAGCACTACACTGTCGGTCCTTGAATGCTGGCTGGGCTTCCACGCCACACCAGCATTATTaGCCAGGACCGAGACCTCGC | + |
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Preference number: 4 (lower is better) Translates to: EHNRALHCRSLNAGWASTPHQHY*PGPRPR Trigger: GCGAGGTCTCGGTCCTGGTCAATAATGCTGGTGTGG...CGTGGAAGCCCAGCCAGCATTCAAGGACCGACAGTGTAGTGCTCTGTTGTGTTC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027053.8 |
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| CDS-3UTR GCA 90 bp | CACCATAAGCAAGCCACCCAGGCTTGCAGGAGAAGAACCGAGAACACAACAGAGTCACCTTTTCCAGCTTaGAGAGCAGCAGCGTCGGCC | + |
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Preference number: 4 (lower is better) Translates to: HHKQATQACRRRTENTTESPFPA*RAAASA Trigger: GGCCGACGCTGCTGCTCTGCAAGCTGGAAAAGGTGA...CTCTGTTGTGTTCTCGGTTCTTCTCCTGCAAGCCTGGGTGGCTTGCTTATGGTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027053.8 |
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| CDS-3UTR CCA 90 bp | ACTAATACAGGCAGTGGAATAACAGAGACAACCACACTAATACAGGCAGTGGGGCCACGCTCTTCTCCTTaGGCCGCACCAGCCAGCGCG | + |
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Preference number: 4 (lower is better) Translates to: TNTGSGITETTTLIQAVGPRSSP*AAPASA Trigger: CGCGCTGGCTGGTGCGGCCCAAGGAGAAGAGCGTGG...CCCCACTGCCTGTATTAGTGTGGTTGTCTCTGTTATTCCACTGCCTGTATTAGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027053.8 |
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| CDS-3UTR CCA 90 bp | TACAGGCAGTGGGGTAACAGAGACAACCACACTAATACAGGCAGTGGAGTAAGAGTGATGAGGCACACCTaGCCGGCCACGCTCTTCTCC | + |
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Preference number: 4 (lower is better) Translates to: YRQWGNRDNHTNTGSGVRVMRHT*PATLFS Trigger: GGAGAAGAGCGTGGCCGGCCAGGTGTGCCTCATCAC...TCTTACTCCACTGCCTGTATTAGTGTGGTTGTCTCTGTTACCCCACTGCCTGTA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027053.8 |
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| CDS-3UTR TCA 90 bp | TACAGGCAGTGGGGTAACAGAGACAACCACACTAATACAGGCAGTGGAGTAAGACAACTCCAGCAGTGCTaGACAGTCCCAGGGAGCTCG | + |
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Preference number: 4 (lower is better) Translates to: YRQWGNRDNHTNTGSGVRQLQQC*TVPGSS Trigger: CGAGCTCCCTGGGACTGTTCAGCACTGCTGGAGTTG...TCTTACTCCACTGCCTGTATTAGTGTGGTTGTCTCTGTTACCCCACTGCCTGTA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027053.8 |
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| CDS-3UTR CCA 90 bp | CACCATAAGCAAGCCACCCAGGCTTGCAGGAGAAGAACCGAGAACACAACAGAGGTCCAGAAGTGTGCGTaGCAGTTGACCATCATGGTT | + |
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Preference number: 4 (lower is better) Translates to: HHKQATQACRRRTENTTEVQKCA*QLTIMV Trigger: AACCATGATGGTCAACTGCCACGCACACTTCTGGAC...CTCTGTTGTGTTCTCGGTTCTTCTCCTGCAAGCCTGGGTGGCTTGCTTATGGTG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027053.8 |
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| CDS-3UTR GCA 90 bp | ACTAATACAGGCAGTGGAATAACAGAGACAACCACACTAATACAGGCAGTGGGGGTGGCGAACCATGCCTaGGGTCTCCTCATTGCTCTG | + |
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Preference number: 4 (lower is better) Translates to: TNTGSGITETTTLIQAVGVANHA*GLLIAL Trigger: CAGAGCAATGAGGAGACCGCAGGCATGGTTCGCCAC...CCCCACTGCCTGTATTAGTGTGGTTGTCTCTGTTATTCCACTGCCTGTATTAGT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027053.8 |
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| CDS-3UTR CCA 90 bp | ATTCAGTCTTACACTGCCTCAAGGCATGGTTGGTTGTCATTCCTAATGAGAAGTGTGCAGACCATGGGCTaGTCAGTGAGGATGGCCCTC | + |
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Preference number: 4 (lower is better) Translates to: IQSYTASRHGWLSFLMRSVQTMG*SVRMAL Trigger: GAGGGCCATCCTCACTGACCAGCCCATGGTCTGCAC...ACTTCTCATTAGGAATGACAACCAACCATGCCTTGAGGCAGTGTAAGACTGAAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027053.8 |
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| CDS-3UTR GCA 90 bp | CAAGTACGGGGACTTTTTAATCAGAAATTCCCATTATCTCTGTGGAGCTGCTGTCCTCGCCAACCTCCTTaGGGACCCTTTCAGCTGTCA | + |
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Preference number: 4 (lower is better) Translates to: QVRGLFNQKFPLSLWSCCPRQPP*GPFQLS Trigger: TGACAGCTGAAAGGGTCCGCAAGGAGGTTGGCGAGG...ACAGCAGCTCCACAGAGATAATGGGAATTTCTGATTAAAAAGTCCCCGTACTTG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027053.8 |
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| CDS-3UTR GCA 90 bp | GACACCCACACTAATACAGGCAGTGGGATAACAGAGACACCCACACTAATACAGAGTGGTCCAGAAGTGTaGGTGGCAGTTGACCATCAT | + |
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Preference number: 4 (lower is better) Translates to: DTHTNTGSGITETPTLIQSGPEV*VAVDHH Trigger: ATGATGGTCAACTGCCACGCACACTTCTGGACCACT...CTGTATTAGTGTGGGTGTCTCTGTTATCCCACTGCCTGTATTAGTGTGGGTGTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027053.8 |
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| 3UTR CAA 72 bp | AACCGAGAACACAACAGAGCACTACACTGTCGGTCCTaGAATGCTGGCTGGGCTTCCACGATAATGAATGAA | + |
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Preference number: 4 (lower is better) Translates to: NREHNRALHCRS*NAGWASTIMNE Trigger: TTCATTCATTATCGTGGAAGCCCAGCCAGCATTCAAGGACCGACAGTGTAGTGCTCTGTTGTGTTCTCGGTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027053.8 |
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| CDS-3UTR TCA 90 bp | TACAGGCAGTGGGGTAACAGAGACAACCACACTAATACAGGCAGTGGAGTAAGAAGTGTGCGTGGCAGTTaGCCATCATGGTTCTTTCAA | + |
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Preference number: 4 (lower is better) Translates to: YRQWGNRDNHTNTGSGVRSVRGS*PSWFFQ Trigger: TTGAAAGAACCATGATGGTCAACTGCCACGCACACT...TCTTACTCCACTGCCTGTATTAGTGTGGTTGTCTCTGTTACCCCACTGCCTGTA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027053.8 |
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| CDS-3UTR TCA 90 bp | TTGAGTAAGCAGGATAAGATAGGCAGGGGAAGACCTCAGAATGCTTTGCCTTATTGGCTCAGAGACTCGTaGAAACCCACAACTCCAAAT | + |
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Preference number: 4 (lower is better) Translates to: LSKQDKIGRGRPQNALPYWLRDS*KPTTPN Trigger: ATTTGGAGTTGTGGGTTTTCACGAGTCTCTGAGCCA...ATAAGGCAAAGCATTCTGAGGTCTTCCCCTGCCTATCTTATCCTGCTTACTCAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027053.8 |
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| 3UTR CAA 72 bp | GTAACAGAGACACCCACACTAATACAGGCAGTGGGGTaGTTCTCTCTTCCCATTTCTAAACAAGCTCTTGGT | + |
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Preference number: 4 (lower is better) Translates to: VTETPTLIQAVG*FSLPISKQALG Trigger: ACCAAGAGCTTGTTTAGAAATGGGAAGAGAGAACAACCCCACTGCCTGTATTAGTGTGGGTGTCTCTGTTAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027053.8 |
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| CDS-3UTR TCA 90 bp | ATTCAGTCTTACACTGCCTCAAGGCATGGTTGGTTGTCATTCCTAATGAGAAGTTCATGGTTCTTTCAATaGGCTCATCAGGACATTCCA | + |
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Preference number: 4 (lower is better) Translates to: IQSYTASRHGWLSFLMRSSWFFQ*AHQDIP Trigger: TGGAATGTCCTGATGAGCTCATTGAAAGAACCATGA...ACTTCTCATTAGGAATGACAACCAACCATGCCTTGAGGCAGTGTAAGACTGAAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027053.8 |
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| 3UTR CAA 72 bp | GGGGAAGACCTCAGAATGCTTTGCCTTATAATGAGGTaGATAGCTAATAACCACAAACTCAGTTATGTACGT | + |
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Preference number: 4 (lower is better) Translates to: GEDLRMLCLIMR*IANNHKLSYVR Trigger: ACGTACATAACTGAGTTTGTGGTTATTAGCTATCAACCTCATTATAAGGCAAAGCATTCTGAGGTCTTCCCC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027053.8 |
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| CDS-3UTR CCA 90 bp | ATATTTAGTCACTGTAAGTTTAAGAAAGAGACTGGTGGCCTTCATTGTGATGCTCAACTCCAAATTTACTaGCACAGTAATCCTCAACTC | + |
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Preference number: 4 (lower is better) Translates to: IFSHCKFKKETGGLHCDAQLQIY*HSNPQL Trigger: GAGTTGAGGATTACTGTGCCAGTAAATTTGGAGTTG...AGCATCACAATGAAGGCCACCAGTCTCTTTCTTAAACTTACAGTGACTAAATAT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027053.8 |
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| CDS TCA 90 bp | AGATGTGGCGAACCATGCCTGCGGTCTCCTCATTGCTCTGCGTGTTaGTGTCCCAGAGAACCAGCAGCGCCCGGCGCCGGGCGAACTCGA | + |
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Preference number: 5 (lower is better) Translates to: RCGEPCLRSPHCSAC*CPREPAAPGAGRTR Trigger: TCGAGTTCGCCCGGCGCCGGGCGCTGCTGGTTCTCTGGGACATCAACACGCAGAGCAATGAGGAGACCGCAGGCATGGTTCGCCACATCT 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027053.8 |
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| CDS-3UTR CAA 90 bp | GAACACAACAGAGCACTACACTGTCGGTCCTTGAATGCTGGCTGGGCTTCCACGCTCACCTTTTCCAGCTaGCAGAGCAGCAGCGTCGGC | + |
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Preference number: 5 (lower is better) Translates to: EHNRALHCRSLNAGWASTLTFSS*QSSSVG Trigger: GCCGACGCTGCTGCTCTGCAAGCTGGAAAAGGTGAG...CGTGGAAGCCCAGCCAGCATTCAAGGACCGACAGTGTAGTGCTCTGTTGTGTTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027053.8 |
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| CDS-3UTR CAA 90 bp | ACTAATACAGGCAGTGGAATAACAGAGACAACCACACTAATACAGGCAGTGGGGGCCACGCTCTTCTCCTaGGGCCGCACCAGCCAGCGC | + |
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Preference number: 5 (lower is better) Translates to: TNTGSGITETTTLIQAVGATLFS*GRTSQR Trigger: GCGCTGGCTGGTGCGGCCCAAGGAGAAGAGCGTGGC...CCCCACTGCCTGTATTAGTGTGGTTGTCTCTGTTATTCCACTGCCTGTATTAGT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027053.8 |
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| CDS TCA 90 bp | GTGCTGAACAGTCCCAGGGAGCTCGCGACCGTCACAATGTGGCCATaGTTAATCTCTAGCATCGTTGGAAGAAAGGCCTTAGTGGTCCAG | + |
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Preference number: 5 (lower is better) Translates to: VLNSPRELATVTMWP*LISSIVGRKALVVQ Trigger: CTGGACCACTAAGGCCTTTCTTCCAACGATGCTAGAGATTAATCATGGCCACATTGTGACGGTCGCGAGCTCCCTGGGACTGTTCAGCAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027053.8 |
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| CDS TCA 90 bp | CAACTCCAAATTTACTGGCACAGTAATCCTCAACTCCAGCAGTGCTaGACAGTCCCAGGGAGCTCGCGACCGTCACAATGTGGCCATGAT | + |
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Preference number: 5 (lower is better) Translates to: QLQIYWHSNPQLQQC*TVPGSSRPSQCGHD Trigger: ATCATGGCCACATTGTGACGGTCGCGAGCTCCCTGGGACTGTTCAGCACTGCTGGAGTTGAGGATTACTGTGCCAGTAAATTTGGAGTTG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027053.8 |
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| CDS-3UTR CAA 90 bp | GAACACAACAGAGCACTACACTGTCGGTCCTTGAATGCTGGCTGGGCTTCCACGAAGTGTGCGTGGCAGTaGACCATCATGGTTCTTTCA | + |
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Preference number: 5 (lower is better) Translates to: EHNRALHCRSLNAGWASTKCAWQ*TIMVLS Trigger: TGAAAGAACCATGATGGTCAACTGCCACGCACACTT...CGTGGAAGCCCAGCCAGCATTCAAGGACCGACAGTGTAGTGCTCTGTTGTGTTC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027053.8 |
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| CDS-3UTR CAA 90 bp | TTGAGTAAGCAGGATAAGATAGGCAGGGGAAGACCTCAGAATGCTTTGCCTTATACCTCGCCAACCTCCTaGCGGACCCTTTCAGCTGTC | + |
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Preference number: 5 (lower is better) Translates to: LSKQDKIGRGRPQNALPYTSPTS*RTLSAV Trigger: GACAGCTGAAAGGGTCCGCAAGGAGGTTGGCGAGGT...ATAAGGCAAAGCATTCTGAGGTCTTCCCCTGCCTATCTTATCCTGCTTACTCAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027053.8 |
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| CDS-3UTR CAA 90 bp | AACAGAGACACCCACACTAATACAGGCAGTGGGATAACAGAGACACCCACACTAAACGCCCACAGCACTTaGAAAGTGACCACGAAGAAC | + |
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Preference number: 5 (lower is better) Translates to: NRDTHTNTGSGITETPTLNAHST*KVTTKN Trigger: GTTCTTCGTGGTCACTTTCAAAGTGCTGTGGGCGTT...TAGTGTGGGTGTCTCTGTTATCCCACTGCCTGTATTAGTGTGGGTGTCTCTGTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027053.8 |
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| CDS TCA 90 bp | ACCATCATGGTTCTTTCAATGAGCTCATCAGGACATTCCAGAAGGTaGTGTCCAGAAACCACACCAGCATTATTGACCAGGACCGAGACC | + |
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Preference number: 5 (lower is better) Translates to: TIMVLSMSSSGHSRR*CPETTPALLTRTET Trigger: GGTCTCGGTCCTGGTCAATAATGCTGGTGTGGTTTCTGGACATCACCTTCTGGAATGTCCTGATGAGCTCATTGAAAGAACCATGATGGT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027053.8 |
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| CDS-3UTR CAA 90 bp | CAAGTACGGGGACTTTTTAATCAGAAATTCCCATTATCTCTGTGGAGCTGCTGTACCACACCAGCATTATaGACCAGGACCGAGACCTCG | + |
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Preference number: 5 (lower is better) Translates to: QVRGLFNQKFPLSLWSCCTTPAL*TRTETS Trigger: CGAGGTCTCGGTCCTGGTCAATAATGCTGGTGTGGT...ACAGCAGCTCCACAGAGATAATGGGAATTTCTGATTAAAAAGTCCCCGTACTTG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027053.8 |
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| CDS-3UTR CAA 90 bp | GACACCCACACTAATACAGGCAGTGGGATAACAGAGACACCCACACTAATACAGAAGGGATACATACACTaGTCCGCTCCTAGAAATCGA | + |
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Preference number: 5 (lower is better) Translates to: DTHTNTGSGITETPTLIQKGYIH*SAPRNR Trigger: TCGATTTCTAGGAGCGGACAAGTGTATGTATCCCTT...CTGTATTAGTGTGGGTGTCTCTGTTATCCCACTGCCTGTATTAGTGTGGGTGTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027053.8 |
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| CDS-3UTR CAA 90 bp | ATATTTAGTCACTGTAAGTTTAAGAAAGAGACTGGTGGCCTTCATTGTGATGCTCCTGCGGTCTCCTCATaGCTCTGCGTGTTGATGTCC | + |
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Preference number: 5 (lower is better) Translates to: IFSHCKFKKETGGLHCDAPAVSS*LCVLMS Trigger: GGACATCAACACGCAGAGCAATGAGGAGACCGCAGG...AGCATCACAATGAAGGCCACCAGTCTCTTTCTTAAACTTACAGTGACTAAATAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027053.8 |
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| CDS-3UTR CAA 90 bp | CAAGTACGGGGACTTTTTAATCAGAAATTCCCATTATCTCTGTGGAGCTGCTGTTTGCTTCATTGTTGTTaGTGGCTTGTTTTCTTTGAG | + |
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Preference number: 5 (lower is better) Translates to: QVRGLFNQKFPLSLWSCCLLHCC*WLVFFE Trigger: CTCAAAGAAAACAAGCCACAAACAACAATGAAGCAA...ACAGCAGCTCCACAGAGATAATGGGAATTTCTGATTAAAAAGTCCCCGTACTTG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000027053.8 |
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| CDS CAA 90 bp | CCCGCGCCCGTGATGAGGCACACCTGGCCGGCCACGCTCTTCTCCTaGGGCCGCACCAGCCAGCGCGCCGCGGCCAGCACGAACGCCCAC | + |
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Preference number: 6 (lower is better) Translates to: PAPVMRHTWPATLFS*GRTSQRAAASTNAH Trigger: GTGGGCGTTCGTGCTGGCCGCGGCGCGCTGGCTGGTGCGGCCCAAGGAGAAGAGCGTGGCCGGCCAGGTGTGCCTCATCACGGGCGCGGG 76% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027053.8 |
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| CDS CCA 72 bp | CCCAGGCCGCTGCCCGCGCCCGTGATGAGGCACACCTaGCCGGCCACGCTCTTCTCCTTGGGCCGCACCAGC | + |
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Preference number: 6 (lower is better) Translates to: PRPLPAPVMRHT*PATLFSLGRTS Trigger: GCTGGTGCGGCCCAAGGAGAAGAGCGTGGCCGGCCAGGTGTGCCTCATCACGGGCGCGGGCAGCGGCCTGGG 75% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027053.8 |
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| CDS CAA 72 bp | GTGATGAGGCACACCTGGCCGGCCACGCTCTTCTCCTaGGGCCGCACCAGCCAGCGCGCCGCGGCCAGCACG | + |
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Preference number: 6 (lower is better) Translates to: VMRHTWPATLFS*GRTSQRAAAST Trigger: CGTGCTGGCCGCGGCGCGCTGGCTGGTGCGGCCCAAGGAGAAGAGCGTGGCCGGCCAGGTGTGCCTCATCAC 74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027053.8 |
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| CDS TCA 72 bp | GAACCATGCCTGCGGTCTCCTCATTGCTCTGCGTGTTaGTGTCCCAGAGAACCAGCAGCGCCCGGCGCCGGG | + |
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Preference number: 6 (lower is better) Translates to: EPCLRSPHCSAC*CPREPAAPGAG Trigger: CCCGGCGCCGGGCGCTGCTGGTTCTCTGGGACATCAACACGCAGAGCAATGAGGAGACCGCAGGCATGGTTC 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027053.8 |
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| CDS CAA 72 bp | CGAACCATGCCTGCGGTCTCCTCATTGCTCTGCGTGTaGATGTCCCAGAGAACCAGCAGCGCCCGGCGCCGG | + |
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Preference number: 6 (lower is better) Translates to: RTMPAVSSLLCV*MSQRTSSARRR Trigger: CCGGCGCCGGGCGCTGCTGGTTCTCTGGGACATCAACACGCAGAGCAATGAGGAGACCGCAGGCATGGTTCG 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027053.8 |
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| CDS GCA 72 bp | CGCCTCCAGGTCCCGGTAGATGTGGCGAACCATGCCTaGGGTCTCCTCATTGCTCTGCGTGTTGATGTCCCA | + |
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Preference number: 6 (lower is better) Translates to: RLQVPVDVANHA*GLLIALRVDVP Trigger: TGGGACATCAACACGCAGAGCAATGAGGAGACCGCAGGCATGGTTCGCCACATCTACCGGGACCTGGAGGCG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027053.8 |
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| CDS CAA 72 bp | CAGCGCGCCGCGGCCAGCACGAACGCCCACAGCACTTaGAAAGTGACCACGAAGAACTCCACTACGATGTTC | + |
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Preference number: 6 (lower is better) Translates to: QRAAASTNAHST*KVTTKNSTTMF Trigger: GAACATCGTAGTGGAGTTCTTCGTGGTCACTTTCAAAGTGCTGTGGGCGTTCGTGCTGGCCGCGGCGCGCTG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027053.8 |
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| CDS TCA 72 bp | ATTTACTGGCACAGTAATCCTCAACTCCAGCAGTGCTaGACAGTCCCAGGGAGCTCGCGACCGTCACAATGT | + |
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Preference number: 6 (lower is better) Translates to: IYWHSNPQLQQC*TVPGSSRPSQC Trigger: ACATTGTGACGGTCGCGAGCTCCCTGGGACTGTTCAGCACTGCTGGAGTTGAGGATTACTGTGCCAGTAAAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027053.8 |
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| CDS CCA 72 bp | GTTGGAAGAAAGGCCTTAGTGGTCCAGAAGTGTGCGTaGCAGTTGACCATCATGGTTCTTTCAATGAGCTCA | + |
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Preference number: 6 (lower is better) Translates to: VGRKALVVQKCA*QLTIMVLSMSS Trigger: TGAGCTCATTGAAAGAACCATGATGGTCAACTGCCACGCACACTTCTGGACCACTAAGGCCTTTCTTCCAAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027053.8 |
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| CDS CAA 72 bp | AGAAAGGCCTTAGTGGTCCAGAAGTGTGCGTGGCAGTaGACCATCATGGTTCTTTCAATGAGCTCATCAGGA | + |
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Preference number: 6 (lower is better) Translates to: RKALVVQKCAWQ*TIMVLSMSSSG Trigger: TCCTGATGAGCTCATTGAAAGAACCATGATGGTCAACTGCCACGCACACTTCTGGACCACTAAGGCCTTTCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027053.8 |
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| CDS GCA 72 bp | GATACATACACTTGTCCGCTCCTAGAAATCGATACATaGACACGACGGCTTCAAAAGGAAGGATGCTCTTCA | + |
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Preference number: 6 (lower is better) Translates to: DTYTCPLLEIDT*TRRLQKEGCSS Trigger: TGAAGAGCATCCTTCCTTTTGAAGCCGTCGTGTGCATGTATCGATTTCTAGGAGCGGACAAGTGTATGTATC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027053.8 |
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