Pregenerated sensors for RDH1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000089789Ensembl transcript IDs: ENSMUST00000073639.6
Found 86 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GGAGTCAGGCATCTATGGAATTCCCTCCCAAGGGCAAGTCTGCACTaGGCCCAGGATTCTGTCTCTCCCACACATGCTGTCCCTGCTCAG | + |
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Preference number: 1 (lower is better) Translates to: GVRHLWNSLPRASLH*AQDSVSPTHAVPAQ Trigger: CTGAGCAGGGACAGCATGTGTGGGAGAGACAGAATCCTGGGCTCAGTGCAGACTTGCCCTTGGGAGGGAATTCCATAGATGCCTGACTCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000073639.6 |
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| 3UTR CCA 90 bp | GGGACCCATGGCTCCAGCCGCACATGTAGCAGAGGATGGCCTTGTTaGTCATCAATGGGAGGAGAGGCCCTTAGTCCTATGAAGGCTGTA | + |
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Preference number: 1 (lower is better) Translates to: GTHGSSRTCSRGWPC*SSMGGEALSPMKAV Trigger: TACAGCCTTCATAGGACTAAGGGCCTCTCCTCCCATTGATGACCAACAAGGCCATCCTCTGCTACATGTGCGGCTGGAGCCATGGGTCCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000073639.6 |
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| 3UTR GCA 90 bp | CTAGCCAGGGCATGTGCATTTCCTGCAGAGGAGGACACAGAAGAATaGTTGGCACAAGCTGGTCCCAGCCTCCTCATCTGTGTCGACCTT | + |
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Preference number: 1 (lower is better) Translates to: LARACAFPAEEDTEE*LAQAGPSLLICVDL Trigger: AAGGTCGACACAGATGAGGAGGCTGGGACCAGCTTGTGCCAAGCATTCTTCTGTGTCCTCCTCTGCAGGAAATGCACATGCCCTGGCTAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000073639.6 |
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| 3UTR GCA 90 bp | TCTGCTAGGTTTCATCACCGGGAACTGAACCTCCCACCCAGGGCCTaGCAACTTGACTCCAGGGCATGGGTGCTGGCTTTATTAGTGACT | + |
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Preference number: 1 (lower is better) Translates to: SARFHHRELNLPPRA*QLDSRAWVLALLVT Trigger: AGTCACTAATAAAGCCAGCACCCATGCCCTGGAGTCAAGTTGGCAGGCCCTGGGTGGGAGGTTCAGTTCCCGGTGATGAAACCTAGCAGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000073639.6 |
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| 3UTR GCA 90 bp | GAAGAGGAGTCAGGCATCTATGGAATTCCCTCCCAAGGGCAAGTCTaGACTGAGCCCAGGATTCTGTCTCTCCCACACATGCTGTCCCTG | + |
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Preference number: 1 (lower is better) Translates to: EEESGIYGIPSQGQV*TEPRILSLPHMLSL Trigger: CAGGGACAGCATGTGTGGGAGAGACAGAATCCTGGGCTCAGTGCAGACTTGCCCTTGGGAGGGAATTCCATAGATGCCTGACTCCTCTTC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000073639.6 |
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| 3UTR CCA 90 bp | CCAGGGCATGTGCATTTCCTGCAGAGGAGGACACAGAAGAATGCTTaGCACAAGCTGGTCCCAGCCTCCTCATCTGTGTCGACCTTCATG | + |
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Preference number: 1 (lower is better) Translates to: PGHVHFLQRRTQKNA*HKLVPASSSVSTFM Trigger: CATGAAGGTCGACACAGATGAGGAGGCTGGGACCAGCTTGTGCCAAGCATTCTTCTGTGTCCTCCTCTGCAGGAAATGCACATGCCCTGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000073639.6 |
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| 3UTR GCA 90 bp | TGCAGGAAAGCATGGTCACTTAGTGAGTCTGCAACTCAGAAAGCCTaGTGGCCTGTGCCAACCCTGACCCCTGTGATCCAAACCTCACTA | + |
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Preference number: 1 (lower is better) Translates to: CRKAWSLSESATQKA*WPVPTLTPVIQTSL Trigger: TAGTGAGGTTTGGATCACAGGGGTCAGGGTTGGCACAGGCCAGCAGGCTTTCTGAGTTGCAGACTCACTAAGTGACCATGCTTTCCTGCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000073639.6 |
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| 3UTR CCA 90 bp | AGGAAAGCATGGTCACTTAGTGAGTCTGCAACTCAGAAAGCCTGCTaGCCTGTGCCAACCCTGACCCCTGTGATCCAAACCTCACTAACC | + |
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Preference number: 1 (lower is better) Translates to: RKAWSLSESATQKAC*PVPTLTPVIQTSLT Trigger: GGTTAGTGAGGTTTGGATCACAGGGGTCAGGGTTGGCACAGGCCAGCAGGCTTTCTGAGTTGCAGACTCACTAAGTGACCATGCTTTCCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000073639.6 |
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| 3UTR CCA 90 bp | ATGGAGCAGAGACTGAAGGAAAGGCCATCCAGAGACTGCCCCACCTaGGTATCCATCCCATATACAGTCATCAAACCCAGACACTACTGT | + |
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Preference number: 1 (lower is better) Translates to: MEQRLKERPSRDCPT*VSIPYTVIKPRHYC Trigger: ACAGTAGTGTCTGGGTTTGATGACTGTATATGGGATGGATACCCAGGTGGGGCAGTCTCTGGATGGCCTTTCCTTCAGTCTCTGCTCCAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000073639.6 |
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| 3UTR TCA 90 bp | GAACAAAATACCCATGAAAGGAGTTACGAAGTATGGAGCAGAGACTaGAGGAAAGGCCATCCAGAGACTGCCCCACCTGGGTATCCATCC | + |
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Preference number: 1 (lower is better) Translates to: EQNTHERSYEVWSRD*RKGHPETAPPGYPS Trigger: GGATGGATACCCAGGTGGGGCAGTCTCTGGATGGCCTTTCCTTCAGTCTCTGCTCCATACTTCGTAACTCCTTTCATGGGTATTTTGTTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000073639.6 |
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| 3UTR GCA 90 bp | TTACGAAGTATGGAGCAGAGACTGAAGGAAAGGCCATCCAGAGACTaGCCCACCTGGGTATCCATCCCATATACAGTCATCAAACCCAGA | + |
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Preference number: 1 (lower is better) Translates to: LRSMEQRLKERPSRD*PTWVSIPYTVIKPR Trigger: TCTGGGTTTGATGACTGTATATGGGATGGATACCCAGGTGGGGCAGTCTCTGGATGGCCTTTCCTTCAGTCTCTGCTCCATACTTCGTAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000073639.6 |
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| 3UTR TCA 90 bp | GGGTCTGCAGGAAAGGGATGGTCACTTAGTGAGTCTGCAGGGAATTaGTTATCATGTATTGAGTCTGCAGGAAGGGATGGCAACTTCCTG | + |
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Preference number: 1 (lower is better) Translates to: GSAGKGWSLSESAGN*LSCIESAGRDGNFL Trigger: CAGGAAGTTGCCATCCCTTCCTGCAGACTCAATACATGATAATCAATTCCCTGCAGACTCACTAAGTGACCATCCCTTTCCTGCAGACCC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000073639.6 |
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| 3UTR TCA 90 bp | TTATGGCAAACCCAAATTCAATTCCTGACACCCACATTATATGGCTaGAAACTTCTTGAAACCAGTGGCCCTCATCTTCCTTCTCACATC | + |
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Preference number: 1 (lower is better) Translates to: LWQTQIQFLTPTLYG*KLLETSGPHLPSHI Trigger: GATGTGAGAAGGAAGATGAGGGCCACTGGTTTCAAGAAGTTTTCAGCCATATAATGTGGGTGTCAGGAATTGAATTTGGGTTTGCCATAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000073639.6 |
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| 3UTR TCA 90 bp | GGTAACCCAATCATAAAAGAACACACACACATGGTATGCACTCAGTaGAAAGTGGGTATTAACCCAGAAGCTTCGAATACCCAAGATACA | + |
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Preference number: 1 (lower is better) Translates to: GNPIIKEHTHMVCTQ*KVGINPEASNTQDT Trigger: TGTATCTTGGGTATTCGAAGCTTCTGGGTTAATACCCACTTTTCACTGAGTGCATACCATGTGTGTGTGTTCTTTTATGATTGGGTTACC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000073639.6 |
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| 3UTR GCA 90 bp | ACATCAGCCAGCACTTTTGTATCTGAATCCCTTGGCAGAATTCTTTaGCTATTTATTTGGTCATCATCAGTCTTGTGTAGTGTCATAGGA | + |
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Preference number: 1 (lower is better) Translates to: TSASTFVSESLGRIL*LFIWSSSVLCSVIG Trigger: TCCTATGACACTACACAAGACTGATGATGACCAAATAAATAGGCAAAGAATTCTGCCAAGGGATTCAGATACAAAAGTGCTGGCTGATGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000073639.6 |
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| 3UTR TCA 90 bp | GAAATTCTTAGGCAATTGGATGGAACTAGAAAATATCATCCTGAGTaGGGTAACCCAATCATAAAAGAACACACACACATGGTATGCACT | + |
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Preference number: 1 (lower is better) Translates to: EILRQLDGTRKYHPE*GNPIIKEHTHMVCT Trigger: AGTGCATACCATGTGTGTGTGTTCTTTTATGATTGGGTTACCTCACTCAGGATGATATTTTCTAGTTCCATCCAATTGCCTAAGAATTTC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000073639.6 |
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| 3UTR TCA 90 bp | AAATCAGAAGGGTTTTATTATAATGGTCAGTTAGTGATACTTATATaGAGGAATGGTGACTTAATGGGTCTGCAGGGAAGGAATGATCAC | + |
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Preference number: 1 (lower is better) Translates to: KSEGFYYNGQLVILI*RNGDLMGLQGRNDH Trigger: GTGATCATTCCTTCCCTGCAGACCCATTAAGTCACCATTCCTTCATATAAGTATCACTAACTGACCATTATAATAAAACCCTTCTGATTT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000073639.6 |
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| 3UTR CCA 90 bp | ACTTTTGTATCTGAATCCCTTGGCAGAATTCTTTGCCTATTTATTTaGTCATCATCAGTCTTGTGTAGTGTCATAGGAGAATTAATGAGA | + |
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Preference number: 1 (lower is better) Translates to: TFVSESLGRILCLFI*SSSVLCSVIGELMR Trigger: TCTCATTAATTCTCCTATGACACTACACAAGACTGATGATGACCAAATAAATAGGCAAAGAATTCTGCCAAGGGATTCAGATACAAAAGT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000073639.6 |
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| 3UTR-3UTR CCA 90 bp | TTCACCAACCTAGCACCAGGCAGAGCCAGGCCTCAGAGGCTATGGGAGTTAAAGGCTGCTGGAGGAGTGTaGCAGTGGGACAGAGGGAGG | + |
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Preference number: 2 (lower is better) Translates to: FTNLAPGRARPQRLWELKAAGGV*QWDRGR Trigger: CCTCCCTCTGTCCCACTGCCACACTCCTCCAGCAGC...CTTTAACTCCCATAGCCTCTGAGGCCTGGCTCTGCCTGGTGCTAGGTTGGTGAA 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000073639.6 |
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| 3UTR-3UTR CCA 90 bp | CCATCCTCTGCTAGGTTTCATCACCGGGAACTGAACCTCCCACCCAGGGCCTGCCTTGACTCCAGGGCATaGGTGCTGGCTTTATTAGTG | + |
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Preference number: 2 (lower is better) Translates to: PSSARFHHRELNLPPRACLDSRA*VLALLV Trigger: CACTAATAAAGCCAGCACCCATGCCCTGGAGTCAAG...GCAGGCCCTGGGTGGGAGGTTCAGTTCCCGGTGATGAAACCTAGCAGAGGATGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000073639.6 |
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| 3UTR CAA 90 bp | AGGATTCTGTCTCTCCCACACATGCTGTCCCTGCTCAGCCTATTCTaGAGATTCACCAACCTAGCACCAGGCAGAGCCAGGCCTCAGAGG | + |
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Preference number: 2 (lower is better) Translates to: RILSLPHMLSLLSLF*RFTNLAPGRARPQR Trigger: CCTCTGAGGCCTGGCTCTGCCTGGTGCTAGGTTGGTGAATCTCAAGAATAGGCTGAGCAGGGACAGCATGTGTGGGAGAGACAGAATCCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000073639.6 |
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| 3UTR-3UTR GCA 90 bp | ATTCACAGACCACCTGAAGCTCAAGAAAAAGGAAGACCAGATGGGCGTGATGGCCTCCCACCCAGGGCCTaGCAACTTGACTCCAGGGCA | + |
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Preference number: 2 (lower is better) Translates to: IHRPPEAQEKGRPDGRDGLPPRA*QLDSRA Trigger: TGCCCTGGAGTCAAGTTGGCAGGCCCTGGGTGGGAG...GCCATCACGCCCATCTGGTCTTCCTTTTTCTTGAGCTTCAGGTGGTCTGTGAAT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000073639.6 |
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| 3UTR-3UTR GCA 90 bp | TTCACCAACCTAGCACCAGGCAGAGCCAGGCCTCAGAGGCTATGGGAGTTAAAGAAGGCAATCTCTGCATaGTGCTGGAGGAGTGTGGCA | + |
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Preference number: 2 (lower is better) Translates to: FTNLAPGRARPQRLWELKKAISA*CWRSVA Trigger: TGCCACACTCCTCCAGCAGCATGCAGAGATTGCCTT...CTTTAACTCCCATAGCCTCTGAGGCCTGGCTCTGCCTGGTGCTAGGTTGGTGAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000073639.6 |
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| 3UTR-3UTR CCA 90 bp | ATTCACAGACCACCTGAAGCTCAAGAAAAAGGAAGACCAGATGGGCGTGATGGCGTCTGCAGCAAGGGATaGTCCCCTAGTGGGTCTGCA | + |
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Preference number: 2 (lower is better) Translates to: IHRPPEAQEKGRPDGRDGVCSKG*SPSGSA Trigger: TGCAGACCCACTAGGGGACCATCCCTTGCTGCAGAC...GCCATCACGCCCATCTGGTCTTCCTTTTTCTTGAGCTTCAGGTGGTCTGTGAAT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000073639.6 |
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| 3UTR-3UTR CCA 90 bp | ATTCACAGACCACCTGAAGCTCAAGAAAAAGGAAGACCAGATGGGCGTGATGGCGGAAGCAGGAGTGTGTaGGTTGGTGAGCAGGGGAGT | + |
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Preference number: 2 (lower is better) Translates to: IHRPPEAQEKGRPDGRDGGSRSV*VGEQGS Trigger: ACTCCCCTGCTCACCAACCCACACACTCCTGCTTCC...GCCATCACGCCCATCTGGTCTTCCTTTTTCTTGAGCTTCAGGTGGTCTGTGAAT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000073639.6 |
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| 3UTR-3UTR CCA 90 bp | AGGGGACATGAGAAGTGGCCTGGGACAAGTTCAGACAGAAAATCAGAAGGGTTTACTCAGAAAGCCTGCTaGCCTGTGCCAACCCTGACC | + |
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Preference number: 2 (lower is better) Translates to: RGHEKWPGTSSDRKSEGFTQKAC*PVPTLT Trigger: GGTCAGGGTTGGCACAGGCCAGCAGGCTTTCTGAGT...AAACCCTTCTGATTTTCTGTCTGAACTTGTCCCAGGCCACTTCTCATGTCCCCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000073639.6 |
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| 3UTR-3UTR GCA 90 bp | ATTCACAGACCACCTGAAGCTCAAGAAAAAGGAAGACCAGATGGGCGTGATGGCTGTCTCTCCCACACATaGTGTCCCTGCTCAGCCTAT | + |
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Preference number: 2 (lower is better) Translates to: IHRPPEAQEKGRPDGRDGCLSHT*CPCSAY Trigger: ATAGGCTGAGCAGGGACAGCATGTGTGGGAGAGACA...GCCATCACGCCCATCTGGTCTTCCTTTTTCTTGAGCTTCAGGTGGTCTGTGAAT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000073639.6 |
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| 3UTR-3UTR CCA 90 bp | CCCAGGATTCTGTCTCTCCCACACATGCTGTCCCTGCTCAGCCTATTCTTGAGAGTCTGCAGGAAAGCATaGTCACTTAGTGAGTCTGCA | + |
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Preference number: 2 (lower is better) Translates to: PRILSLPHMLSLLSLFLRVCRKA*SLSESA Trigger: TGCAGACTCACTAAGTGACCATGCTTTCCTGCAGAC...TCTCAAGAATAGGCTGAGCAGGGACAGCATGTGTGGGAGAGACAGAATCCTGGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000073639.6 |
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| 3UTR-3UTR CCA 90 bp | CTCTTATGGCACCTCAGCCCCCACATTTCTACTGAGAGAAGAGGAGTCAGGCATGTCTGCAGGAAGGGATaGCAACTTCCTGATTCTGCA | + |
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Preference number: 2 (lower is better) Translates to: LLWHLSPHISTERRGVRHVCRKG*QLPDSA Trigger: TGCAGAATCAGGAAGTTGCCATCCCTTCCTGCAGAC...ATGCCTGACTCCTCTTCTCTCAGTAGAAATGTGGGGGCTGAGGTGCCATAAGAG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000073639.6 |
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| 3UTR-3UTR TCA 90 bp | ATACCCAAGATACAATTCACAGACCACCTGAAGCTCAAGAAAAAGGAAGACCAGTTCATCACCGGGAACTaGACCTCCCACCCAGGGCCT | + |
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Preference number: 2 (lower is better) Translates to: IPKIQFTDHLKLKKKEDQFITGN*TSHPGP Trigger: AGGCCCTGGGTGGGAGGTTCAGTTCCCGGTGATGAA...CTGGTCTTCCTTTTTCTTGAGCTTCAGGTGGTCTGTGAATTGTATCTTGGGTAT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000073639.6 |
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| 3UTR-3UTR CCA 90 bp | ATTCACAGACCACCTGAAGCTCAAGAAAAAGGAAGACCAGATGGGCGTGATGGCAGAGACTGCCCCACCTaGGTATCCATCCCATATACA | + |
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Preference number: 2 (lower is better) Translates to: IHRPPEAQEKGRPDGRDGRDCPT*VSIPYT Trigger: TGTATATGGGATGGATACCCAGGTGGGGCAGTCTCT...GCCATCACGCCCATCTGGTCTTCCTTTTTCTTGAGCTTCAGGTGGTCTGTGAAT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000073639.6 |
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| 3UTR-3UTR GCA 90 bp | ATTCACAGACCACCTGAAGCTCAAGAAAAAGGAAGACCAGATGGGCGTGATGGCCCTATGAAGGCTGTATaGCCCAGTGTAAAGGAATGC | + |
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Preference number: 2 (lower is better) Translates to: IHRPPEAQEKGRPDGRDGPMKAV*PSVKEC Trigger: GCATTCCTTTACACTGGGGCATACAGCCTTCATAGG...GCCATCACGCCCATCTGGTCTTCCTTTTTCTTGAGCTTCAGGTGGTCTGTGAAT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000073639.6 |
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| 3UTR-3UTR CCA 90 bp | ATTCACAGACCACCTGAAGCTCAAGAAAAAGGAAGACCAGATGGGCGTGATGGCTCTGCAGGAAAGGGATaGTCACTTAGTGAGTCTGCA | + |
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Preference number: 2 (lower is better) Translates to: IHRPPEAQEKGRPDGRDGSAGKG*SLSESA Trigger: TGCAGACTCACTAAGTGACCATCCCTTTCCTGCAGA...GCCATCACGCCCATCTGGTCTTCCTTTTTCTTGAGCTTCAGGTGGTCTGTGAAT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000073639.6 |
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| 3UTR-3UTR TCA 90 bp | ATTCACAGACCACCTGAAGCTCAAGAAAAAGGAAGACCAGATGGGCGTGATGGCTATATGAAGGAATGGTaGCTTAATGGGTCTGCAGGG | + |
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Preference number: 2 (lower is better) Translates to: IHRPPEAQEKGRPDGRDGYMKEW*LNGSAG Trigger: CCCTGCAGACCCATTAAGTCACCATTCCTTCATATA...GCCATCACGCCCATCTGGTCTTCCTTTTTCTTGAGCTTCAGGTGGTCTGTGAAT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000073639.6 |
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| 3UTR-3UTR CCA 90 bp | CATTATATGGCTGAAAACTTCTTGAAACCAGTGGCCCTCATCTTCCTTCTCACAACACAGAAGAATGCTTaGCACAAGCTGGTCCCAGCC | + |
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Preference number: 2 (lower is better) Translates to: HYMAENFLKPVALIFLLTTQKNA*HKLVPA Trigger: GGCTGGGACCAGCTTGTGCCAAGCATTCTTCTGTGT...TGTGAGAAGGAAGATGAGGGCCACTGGTTTCAAGAAGTTTTCAGCCATATAATG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000073639.6 |
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| 3UTR-3UTR CCA 90 bp | CCCAGGATTCTGTCTCTCCCACACATGCTGTCCCTGCTCAGCCTATTCTTGAGACTTTGCCTATTTATTTaGTCATCATCAGTCTTGTGT | + |
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Preference number: 2 (lower is better) Translates to: PRILSLPHMLSLLSLFLRLCLFI*SSSVLC Trigger: ACACAAGACTGATGATGACCAAATAAATAGGCAAAG...TCTCAAGAATAGGCTGAGCAGGGACAGCATGTGTGGGAGAGACAGAATCCTGGG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000073639.6 |
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| 3UTR-3UTR CCA 90 bp | CATTATATGGCTGAAAACTTCTTGAAACCAGTGGCCCTCATCTTCCTTCTCACATCAGACCCTACACCATaGTCTCAGGTGACTTCAGAG | + |
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Preference number: 2 (lower is better) Translates to: HYMAENFLKPVALIFLLTSDPTP*SQVTSE Trigger: CTCTGAAGTCACCTGAGACCATGGTGTAGGGTCTGA...TGTGAGAAGGAAGATGAGGGCCACTGGTTTCAAGAAGTTTTCAGCCATATAATG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000073639.6 |
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| 3UTR-3UTR TCA 90 bp | ATACCCAAGATACAATTCACAGACCACCTGAAGCTCAAGAAAAAGGAAGACCAGGGGCACTCCCACACATaGAACATACAGATATACAAA | + |
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Preference number: 2 (lower is better) Translates to: IPKIQFTDHLKLKKKEDQGHSHT*NIQIYK Trigger: TTTGTATATCTGTATGTTTCATGTGTGGGAGTGCCC...CTGGTCTTCCTTTTTCTTGAGCTTCAGGTGGTCTGTGAATTGTATCTTGGGTAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000073639.6 |
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| 3UTR-3UTR TCA 90 bp | ATTATCGTTTATTTACAAGTTCCTCTTATGGCACCTCAGCCCCCACATTTCTACCAGCACTTTTGTATCTaGATCCCTTGGCAGAATTCT | + |
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Preference number: 2 (lower is better) Translates to: IIVYLQVPLMAPQPPHFYQHFCI*IPWQNS Trigger: AGAATTCTGCCAAGGGATTCAGATACAAAAGTGCTG...GTAGAAATGTGGGGGCTGAGGTGCCATAAGAGGAACTTGTAAATAAACGATAAT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000073639.6 |
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| 3UTR-3UTR TCA 90 bp | ATACCCAAGATACAATTCACAGACCACCTGAAGCTCAAGAAAAAGGAAGACCAGGGAGAATTAATGAGATaGAGTGTGTTGACTAAGAAC | + |
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Preference number: 2 (lower is better) Translates to: IPKIQFTDHLKLKKKEDQGELMR*SVLTKN Trigger: GTTCTTAGTCAACACACTTCATCTCATTAATTCTCC...CTGGTCTTCCTTTTTCTTGAGCTTCAGGTGGTCTGTGAATTGTATCTTGGGTAT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000073639.6 |
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| 3UTR TCA 72 bp | TGTCTCCATCCTCTGCTAGGTTTCATCACCGGGAACTaGACCTCCCACCCAGGGCCTGCCAACTTGACTCCA | + |
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Preference number: 3 (lower is better) Translates to: CLHPLLGFITGN*TSHPGPANLTP Trigger: TGGAGTCAAGTTGGCAGGCCCTGGGTGGGAGGTTCAGTTCCCGGTGATGAAACCTAGCAGAGGATGGAGACA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000073639.6 |
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| 3UTR CCA 72 bp | TGCAGAGGAGGACACAGAAGAATGCTTGGCACAAGCTaGTCCCAGCCTCCTCATCTGTGTCGACCTTCATGG | + |
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Preference number: 3 (lower is better) Translates to: CRGGHRRMLGTS*SQPPHLCRPSW Trigger: CCATGAAGGTCGACACAGATGAGGAGGCTGGGACCAGCTTGTGCCAAGCATTCTTCTGTGTCCTCCTCTGCA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000073639.6 |
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| 3UTR CCA 72 bp | GTGCATTTCCTGCAGAGGAGGACACAGAAGAATGCTTaGCACAAGCTGGTCCCAGCCTCCTCATCTGTGTCG | + |
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Preference number: 3 (lower is better) Translates to: VHFLQRRTQKNA*HKLVPASSSVS Trigger: CGACACAGATGAGGAGGCTGGGACCAGCTTGTGCCAAGCATTCTTCTGTGTCCTCCTCTGCAGGAAATGCAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000073639.6 |
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| 3UTR CCA 72 bp | TGGTCACTTAGTGAGTCTGCAACTCAGAAAGCCTGCTaGCCTGTGCCAACCCTGACCCCTGTGATCCAAACC | + |
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Preference number: 3 (lower is better) Translates to: WSLSESATQKAC*PVPTLTPVIQT Trigger: GGTTTGGATCACAGGGGTCAGGGTTGGCACAGGCCAGCAGGCTTTCTGAGTTGCAGACTCACTAAGTGACCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000073639.6 |
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| 3UTR TCA 72 bp | CATCTATGGAATTCCCTCCCAAGGGCAAGTCTGCACTaGGCCCAGGATTCTGTCTCTCCCACACATGCTGTC | + |
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Preference number: 3 (lower is better) Translates to: HLWNSLPRASLH*AQDSVSPTHAV Trigger: GACAGCATGTGTGGGAGAGACAGAATCCTGGGCTCAGTGCAGACTTGCCCTTGGGAGGGAATTCCATAGATG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000073639.6 |
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| 3UTR GCA 72 bp | ATGGGAGGAGAGGCCCTTAGTCCTATGAAGGCTGTATaGCCCAGTGTAAAGGAATGCCAGAGCCAGGAAGCA | + |
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Preference number: 3 (lower is better) Translates to: MGGEALSPMKAV*PSVKECQSQEA Trigger: TGCTTCCTGGCTCTGGCATTCCTTTACACTGGGGCATACAGCCTTCATAGGACTAAGGGCCTCTCCTCCCAT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000073639.6 |
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| 3UTR GCA 72 bp | AGGGTTCTACCAGTACCTGACAAATACAGAGATGGGTaGTCTCAGGCATCCAGTGGACTGAGCACCATGTCC | + |
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Preference number: 3 (lower is better) Translates to: RVLPVPDKYRDG*SQASSGLSTMS Trigger: GGACATGGTGCTCAGTCCACTGGATGCCTGAGAGCACCCATCTCTGTATTTGTCAGGTACTGGTAGAACCCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000073639.6 |
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| 3UTR GCA 72 bp | ATGGAGCAGAGACTGAAGGAAAGGCCATCCAGAGACTaGCCCACCTGGGTATCCATCCCATATACAGTCATC | + |
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Preference number: 3 (lower is better) Translates to: MEQRLKERPSRD*PTWVSIPYTVI Trigger: GATGACTGTATATGGGATGGATACCCAGGTGGGGCAGTCTCTGGATGGCCTTTCCTTCAGTCTCTGCTCCAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000073639.6 |
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| 3UTR CCA 72 bp | AGACTGAAGGAAAGGCCATCCAGAGACTGCCCCACCTaGGTATCCATCCCATATACAGTCATCAAACCCAGA | + |
|
Preference number: 3 (lower is better) Translates to: RLKERPSRDCPT*VSIPYTVIKPR Trigger: TCTGGGTTTGATGACTGTATATGGGATGGATACCCAGGTGGGGCAGTCTCTGGATGGCCTTTCCTTCAGTCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000073639.6 |
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| 3UTR-3UTR CAA 90 bp | CTCTTATGGCACCTCAGCCCCCACATTTCTACTGAGAGAAGAGGAGTCAGGCATCATCAGCCAGCACTTTaGTATCTGAATCCCTTGGCA | + |
|
Preference number: 3 (lower is better) Translates to: LLWHLSPHISTERRGVRHHQPAL*YLNPLA Trigger: TGCCAAGGGATTCAGATACAAAAGTGCTGGCTGATG...ATGCCTGACTCCTCTTCTCTCAGTAGAAATGTGGGGGCTGAGGTGCCATAAGAG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000073639.6 |
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| 3UTR TCA 72 bp | GTTCCTCTTATGGCACCTCAGCCCCCACATTTCTACTaGGAGAAGAGGAGTCAGGCATCTATGGAATTCCCT | + |
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Preference number: 3 (lower is better) Translates to: VPLMAPQPPHFY*EKRSQASMEFP Trigger: AGGGAATTCCATAGATGCCTGACTCCTCTTCTCTCAGTAGAAATGTGGGGGCTGAGGTGCCATAAGAGGAAC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000073639.6 |
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| 3UTR CCA 72 bp | CTGGCTTTATTAGTGACTCTCTCAGACCCTACACCATaGTCTCAGGTGACTTCAGAGCAGGGACACTTCCAT | + |
|
Preference number: 3 (lower is better) Translates to: LALLVTLSDPTP*SQVTSEQGHFH Trigger: ATGGAAGTGTCCCTGCTCTGAAGTCACCTGAGACCATGGTGTAGGGTCTGAGAGAGTCACTAATAAAGCCAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000073639.6 |
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| 3UTR TCA 72 bp | CTTGGGTCCTTCTTAGAAGGGAGAACAAAATACCCATaGAAGGAGTTACGAAGTATGGAGCAGAGACTGAAG | + |
|
Preference number: 3 (lower is better) Translates to: LGSFLEGRTKYP*KELRSMEQRLK Trigger: CTTCAGTCTCTGCTCCATACTTCGTAACTCCTTTCATGGGTATTTTGTTCTCCCTTCTAAGAAGGACCCAAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000073639.6 |
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| 3UTR TCA 72 bp | ACCCAAATTCAATTCCTGACACCCACATTATATGGCTaGAAACTTCTTGAAACCAGTGGCCCTCATCTTCCT | + |
|
Preference number: 3 (lower is better) Translates to: TQIQFLTPTLYG*KLLETSGPHLP Trigger: AGGAAGATGAGGGCCACTGGTTTCAAGAAGTTTTCAGCCATATAATGTGGGTGTCAGGAATTGAATTTGGGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000073639.6 |
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| 3UTR TCA 72 bp | GCTCATAGTCTGGACATCAGCCAGCACTTTTGTATCTaGATCCCTTGGCAGAATTCTTTGCCTATTTATTTG | + |
|
Preference number: 3 (lower is better) Translates to: AHSLDISQHFCI*IPWQNSLPIYL Trigger: CAAATAAATAGGCAAAGAATTCTGCCAAGGGATTCAGATACAAAAGTGCTGGCTGATGTCCAGACTATGAGC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000073639.6 |
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| 3UTR-3UTR CAA 90 bp | ATACCCAAGATACAATTCACAGACCACCTGAAGCTCAAGAAAAAGGAAGACCAGCCTTGGCAGAATTCTTaGCCTATTTATTTGGTCATC | + |
|
Preference number: 3 (lower is better) Translates to: IPKIQFTDHLKLKKKEDQPWQNS*PIYLVI Trigger: GATGACCAAATAAATAGGCAAAGAATTCTGCCAAGG...CTGGTCTTCCTTTTTCTTGAGCTTCAGGTGGTCTGTGAATTGTATCTTGGGTAT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000073639.6 |
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| 3UTR TCA 72 bp | GCTTCCTGCTCTTATGGCAAACCCAAATTCAATTCCTaGCACCCACATTATATGGCTGAAAACTTCTTGAAA | + |
|
Preference number: 3 (lower is better) Translates to: ASCSYGKPKFNS*HPHYMAENFLK Trigger: TTTCAAGAAGTTTTCAGCCATATAATGTGGGTGTCAGGAATTGAATTTGGGTTTGCCATAAGAGCAGGAAGC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000073639.6 |
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| 3UTR TCA 72 bp | AGGCAATTGGATGGAACTAGAAAATATCATCCTGAGTaGGGTAACCCAATCATAAAAGAACACACACACATG | + |
|
Preference number: 3 (lower is better) Translates to: RQLDGTRKYHPE*GNPIIKEHTHM Trigger: CATGTGTGTGTGTTCTTTTATGATTGGGTTACCTCACTCAGGATGATATTTTCTAGTTCCATCCAATTGCCT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000073639.6 |
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| 3UTR TCA 72 bp | TCAGTCTTGTGTAGTGTCATAGGAGAATTAATGAGATaGAGTGTGTTGACTAAGAACCCCAGACTAATAAAC | + |
|
Preference number: 3 (lower is better) Translates to: SVLCSVIGELMR*SVLTKNPRLIN Trigger: GTTTATTAGTCTGGGGTTCTTAGTCAACACACTTCATCTCATTAATTCTCCTATGACACTACACAAGACTGA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000073639.6 |
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| 3UTR CAA 72 bp | TCTCTCCCACACATGCTGTCCCTGCTCAGCCTATTCTaGAGATTCACCAACCTAGCACCAGGCAGAGCCAGG | + |
|
Preference number: 4 (lower is better) Translates to: SLPHMLSLLSLF*RFTNLAPGRAR Trigger: CCTGGCTCTGCCTGGTGCTAGGTTGGTGAATCTCAAGAATAGGCTGAGCAGGGACAGCATGTGTGGGAGAGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000073639.6 |
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| CDS-3UTR TCA 90 bp | ATTCACAGACCACCTGAAGCTCAAGAAAAAGGAAGACCAGATGGGCGTGATGGCAGGAGAGCTCCCTCCTaGGGGAGTCTGAGAAGGCCT | + |
|
Preference number: 4 (lower is better) Translates to: IHRPPEAQEKGRPDGRDGRRAPS*GSLRRP Trigger: AGGCCTTCTCAGACTCCCTCAGGAGGGAGCTCTCCT...GCCATCACGCCCATCTGGTCTTCCTTTTTCTTGAGCTTCAGGTGGTCTGTGAAT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000073639.6 |
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| CDS-3UTR TCA 90 bp | AGGGGACATGAGAAGTGGCCTGGGACAAGTTCAGACAGAAAATCAGAAGGGTTTGGCATCCCAGCCTGCTaGGTATCGAGTGCGAGGGTG | + |
|
Preference number: 4 (lower is better) Translates to: RGHEKWPGTSSDRKSEGFGIPAC*VSSARV Trigger: CACCCTCGCACTCGATACTCAGCAGGCTGGGATGCC...AAACCCTTCTGATTTTCTGTCTGAACTTGTCCCAGGCCACTTCTCATGTCCCCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000073639.6 |
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| CDS-3UTR GCA 90 bp | TTCACCAACCTAGCACCAGGCAGAGCCAGGCCTCAGAGGCTATGGGAGTTAAAGCTTCTCCGTCAGACATaGAGCCAATACCCTCATGCC | + |
|
Preference number: 4 (lower is better) Translates to: FTNLAPGRARPQRLWELKLLRQT*SQYPHA Trigger: GGCATGAGGGTATTGGCTGCATGTCTGACGGAGAAG...CTTTAACTCCCATAGCCTCTGAGGCCTGGCTCTGCCTGGTGCTAGGTTGGTGAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000073639.6 |
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| CDS-3UTR GCA 90 bp | CTCTTATGGCACCTCAGCCCCCACATTTCTACTGAGAGAAGAGGAGTCAGGCATCTGCTGAGTATCGAGTaGGAGGGTGGCAGGCAGTCA | + |
|
Preference number: 4 (lower is better) Translates to: LLWHLSPHISTERRGVRHLLSIE*EGGRQS Trigger: TGACTGCCTGCCACCCTCGCACTCGATACTCAGCAG...ATGCCTGACTCCTCTTCTCTCAGTAGAAATGTGGGGGCTGAGGTGCCATAAGAG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000073639.6 |
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| 3UTR CAA 72 bp | TGTGCATTTCCTGCAGAGGAGGACACAGAAGAATGCTaGGCACAAGCTGGTCCCAGCCTCCTCATCTGTGTC | + |
|
Preference number: 4 (lower is better) Translates to: CAFPAEEDTEEC*AQAGPSLLICV Trigger: GACACAGATGAGGAGGCTGGGACCAGCTTGTGCCAAGCATTCTTCTGTGTCCTCCTCTGCAGGAAATGCACA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000073639.6 |
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| CDS-3UTR TCA 90 bp | CTCTTATGGCACCTCAGCCCCCACATTTCTACTGAGAGAAGAGGAGTCAGGCATCCTCCTGAGGGAGTCTaGGAAGGCCTCTACACCATA | + |
|
Preference number: 4 (lower is better) Translates to: LLWHLSPHISTERRGVRHPPEGV*EGLYTI Trigger: TATGGTGTAGAGGCCTTCTCAGACTCCCTCAGGAGG...ATGCCTGACTCCTCTTCTCTCAGTAGAAATGTGGGGGCTGAGGTGCCATAAGAG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000073639.6 |
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| CDS-3UTR GCA 90 bp | ATTCACAGACCACCTGAAGCTCAAGAAAAAGGAAGACCAGATGGGCGTGATGGCCACCCACTGAGTGGCTaGCACAATACTCTCTGTCTT | + |
|
Preference number: 4 (lower is better) Translates to: IHRPPEAQEKGRPDGRDGHPLSG*HNTLCL Trigger: AAGACAGAGAGTATTGTGGCAGCCACTCAGTGGGTG...GCCATCACGCCCATCTGGTCTTCCTTTTTCTTGAGCTTCAGGTGGTCTGTGAAT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000073639.6 |
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| CDS-3UTR CCA 90 bp | TGGTCACTTAGTGAGTCTGCAACTCAGAAAGCCTGCTGGCCTGTGCCAACCCTGTGTCCCAGATCATCTTaGTGTTTGATGATAGCCTGT | + |
|
Preference number: 4 (lower is better) Translates to: WSLSESATQKACWPVPTLCPRSS*CLMIAC Trigger: ACAGGCTATCATCAAACACCAAGATGATCTGGGACA...CAGGGTTGGCACAGGCCAGCAGGCTTTCTGAGTTGCAGACTCACTAAGTGACCA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000073639.6 |
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| CDS-3UTR CCA 90 bp | AGGGGACATGAGAAGTGGCCTGGGACAAGTTCAGACAGAAAATCAGAAGGGTTTCTTTCTCAGGCTTCATaGAAGTCCAGTAGAGAAGGG | + |
|
Preference number: 4 (lower is better) Translates to: RGHEKWPGTSSDRKSEGFLSQAS*KSSREG Trigger: CCCTTCTCTACTGGACTTCCATGAAGCCTGAGAAAG...AAACCCTTCTGATTTTCTGTCTGAACTTGTCCCAGGCCACTTCTCATGTCCCCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000073639.6 |
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| CDS-3UTR GCA 90 bp | CATTATATGGCTGAAAACTTCTTGAAACCAGTGGCCCTCATCTTCCTTCTCACAGAGTCACCTCGATCATaGCCAACAGGTTCACATCCA | + |
|
Preference number: 4 (lower is better) Translates to: HYMAENFLKPVALIFLLTESPRS*PTGSHP Trigger: TGGATGTGAACCTGTTGGGCATGATCGAGGTGACTC...TGTGAGAAGGAAGATGAGGGCCACTGGTTTCAAGAAGTTTTCAGCCATATAATG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000073639.6 |
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| CDS-3UTR TCA 90 bp | ATACCCAAGATACAATTCACAGACCACCTGAAGCTCAAGAAAAAGGAAGACCAGTACTCTCTGTCTTGGTaGCATCCAGGATCACTGTCT | + |
|
Preference number: 4 (lower is better) Translates to: IPKIQFTDHLKLKKKEDQYSLSW*HPGSLS Trigger: AGACAGTGATCCTGGATGTCACCAAGACAGAGAGTA...CTGGTCTTCCTTTTTCTTGAGCTTCAGGTGGTCTGTGAATTGTATCTTGGGTAT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000073639.6 |
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| CDS-3UTR GCA 90 bp | ATTATCGTTTATTTACAAGTTCCTCTTATGGCACCTCAGCCCCCACATTTCTACTCACTAAGGGCAGCATaGTCAGAGTCACCTCGATCA | + |
|
Preference number: 4 (lower is better) Translates to: IIVYLQVPLMAPQPPHFYSLRAA*SESPRS Trigger: TGATCGAGGTGACTCTGAGCATGCTGCCCTTAGTGA...GTAGAAATGTGGGGGCTGAGGTGCCATAAGAGGAACTTGTAAATAAACGATAAT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000073639.6 |
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| CDS CCA 90 bp | CAGGCTTCATGGAAGTCCAGTAGAGAAGGGCATCCACAAGAAAGGTaGGCAGGTAGCTCAAGGGGAGGAAGAGGAACTTGGCATCCCAGC | + |
|
Preference number: 5 (lower is better) Translates to: QASWKSSREGHPQER*AGSSRGGRGTWHPS Trigger: GCTGGGATGCCAAGTTCCTCTTCCTCCCCTTGAGCTACCTGCCCACCTTTCTTGTGGATGCCCTTCTCTACTGGACTTCCATGAAGCCTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000073639.6 |
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| CDS-3UTR CAA 90 bp | TGGTCACTTAGTGAGTCTGCAACTCAGAAAGCCTGCTGGCCTGTGCCAACCCTGACAGACAGGTCCTTGTaGCACCTCTTGTCCAATTCG | + |
|
Preference number: 5 (lower is better) Translates to: WSLSESATQKACWPVPTLTDRSL*HLLSNS Trigger: CGAATTGGACAAGAGGTGCAACAAGGACCTGTCTGT...CAGGGTTGGCACAGGCCAGCAGGCTTTCTGAGTTGCAGACTCACTAAGTGACCA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000073639.6 |
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| CDS-3UTR CAA 90 bp | GCAGGAAGGGATGGCAACTTCCTGATTCTGCAGGTAAGATACGGTCAATTAGTGGGGAGGAAGAGGAACTaGGCATCCCAGCCTGCTGAG | + |
|
Preference number: 5 (lower is better) Translates to: AGRDGNFLILQVRYGQLVGRKRN*ASQPAE Trigger: CTCAGCAGGCTGGGATGCCAAGTTCCTCTTCCTCCC...CACTAATTGACCGTATCTTACCTGCAGAATCAGGAAGTTGCCATCCCTTCCTGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000073639.6 |
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| CDS-3UTR CAA 90 bp | CATTATATGGCTGAAAACTTCTTGAAACCAGTGGCCCTCATCTTCCTTCTCACAAGATCATCTTGGTGTTaGATGATAGCCTGTCACTAC | + |
|
Preference number: 5 (lower is better) Translates to: HYMAENFLKPVALIFLLTRSSWC*MIACHY Trigger: GTAGTGACAGGCTATCATCAAACACCAAGATGATCT...TGTGAGAAGGAAGATGAGGGCCACTGGTTTCAAGAAGTTTTCAGCCATATAATG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000073639.6 |
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| CDS TCA 90 bp | GGTTTTTCAGATAGAATAATAAAAACTTCTCGCCATAGATCTCTTTaGCTTCCGAGCTGGCCTTGTCCCAGATCATCTTGGTGTTTGATG | + |
|
Preference number: 5 (lower is better) Translates to: GFSDRIIKTSRHRSL*LPSWPCPRSSWCLM Trigger: CATCAAACACCAAGATGATCTGGGACAAGGCCAGCTCGGAAGTCAAAGAGATCTATGGCGAGAAGTTTTTATTATTCTATCTGAAAAACC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000073639.6 |
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| CDS CAA 72 bp | CCAAAGAAAGACATTCGGCCCATGACGCTGGAGACGTaGACCACACGACCCCTCGCCTTCCTCACTAAGGGC | + |
|
Preference number: 6 (lower is better) Translates to: PKKDIRPMTLET*TTRPLAFLTKG Trigger: GCCCTTAGTGAGGAAGGCGAGGGGTCGTGTGGTCAACGTCTCCAGCGTCATGGGCCGAATGTCTTTCTTTGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000073639.6 |
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| CDS GCA 72 bp | ATGAAGACATACTTGTCTTGGAGATGGCTCACCACCTaGCTCTCCCTAAAGAAGCGCAGGAGCGTCCACAGG | + |
|
Preference number: 6 (lower is better) Translates to: MKTYLSWRWLTT*LSLKKRRSVHR Trigger: CCTGTGGACGCTCCTGCGCTTCTTTAGGGAGAGGCAGGTGGTGAGCCATCTCCAAGACAAGTATGTCTTCAT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000073639.6 |
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| CDS CCA 72 bp | TGGAAGTCCAGTAGAGAAGGGCATCCACAAGAAAGGTaGGCAGGTAGCTCAAGGGGAGGAAGAGGAACTTGG | + |
|
Preference number: 6 (lower is better) Translates to: WKSSREGHPQER*AGSSRGGRGTW Trigger: CCAAGTTCCTCTTCCTCCCCTTGAGCTACCTGCCCACCTTTCTTGTGGATGCCCTTCTCTACTGGACTTCCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000073639.6 |
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| CDS CAA 72 bp | GCGTGCTCCATGCAGTCAGTCACCACAGACAGGTCCTaGTTGCACCTCTTGTCCAATTCGTTTAGGTTTTTC | + |
|
Preference number: 6 (lower is better) Translates to: ACSMQSVTTDRS*LHLLSNSFRFF Trigger: GAAAAACCTAAACGAATTGGACAAGAGGTGCAACAAGGACCTGTCTGTGGTGACTGACTGCATGGAGCACGC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000073639.6 |
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| CDS CAA 72 bp | CTTCCGAGCTGGCCTTGTCCCAGATCATCTTGGTGTTaGATGATAGCCTGTCACTACTTGTCACACAAGTCT | + |
|
Preference number: 6 (lower is better) Translates to: LPSWPCPRSSWC*MIACHYLSHKS Trigger: AGACTTGTGTGACAAGTAGTGACAGGCTATCATCAAACACCAAGATGATCTGGGACAAGGCCAGCTCGGAAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000073639.6 |
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| CDS GCA 72 bp | GCTCCATGCAGTCAGTCACCACAGACAGGTCCTTGTTaGACCTCTTGTCCAATTCGTTTAGGTTTTTCAGAT | + |
|
Preference number: 6 (lower is better) Translates to: APCSQSPQTGPC*TSCPIRLGFSD Trigger: ATCTGAAAAACCTAAACGAATTGGACAAGAGGTGCAACAAGGACCTGTCTGTGGTGACTGACTGCATGGAGC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000073639.6 |
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| CDS CAA 72 bp | TCTTTGACTTCCGAGCTGGCCTTGTCCCAGATCATCTaGGTGTTTGATGATAGCCTGTCACTACTTGTCACA | + |
|
Preference number: 6 (lower is better) Translates to: SLTSELALSQII*VFDDSLSLLVT Trigger: TGTGACAAGTAGTGACAGGCTATCATCAAACACCAAGATGATCTGGGACAAGGCCAGCTCGGAAGTCAAAGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000073639.6 |
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| CDS CAA 72 bp | TTTGATGATAGCCTGTCACTACTTGTCACACAAGTCTaGAAGCCTCCAGGCTCTATAATAGCCACCTTCACC | + |
|
Preference number: 6 (lower is better) Translates to: FDDSLSLLVTQV*KPPGSIIATFT Trigger: GGTGAAGGTGGCTATTATAGAGCCTGGAGGCTTCAAGACTTGTGTGACAAGTAGTGACAGGCTATCATCAAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000073639.6 |
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| CDS TCA 72 bp | GATAGAATAATAAAAACTTCTCGCCATAGATCTCTTTaGCTTCCGAGCTGGCCTTGTCCCAGATCATCTTGG | + |
|
Preference number: 6 (lower is better) Translates to: DRIIKTSRHRSL*LPSWPCPRSSW Trigger: CCAAGATGATCTGGGACAAGGCCAGCTCGGAAGTCAAAGAGATCTATGGCGAGAAGTTTTTATTATTCTATC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000073639.6 |
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