Pregenerated sensors for RD3L (Mus musculus)
Ensembl gene IDs: ENSMUSG00000091402Ensembl transcript IDs: ENSMUST00000170525.3, ENSMUST00000185354.2, ENSMUST00000189759.7, ENSMUST00000190536.2, ENSMUST00000190680.2
Found 49 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GGGGAAACCTGTTCTTGGCATGTTTGTCTACATAGCTTGAAATCGTaGGTATCTCCTCTTTGTCTGGCCTCTCAGAGCTTTCACCTGGGA | + |
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Preference number: 1 (lower is better) Translates to: GETCSWHVCLHSLKS*VSPLCLASQSFHLG Trigger: TCCCAGGTGAAAGCTCTGAGAGGCCAGACAAAGAGGAGATACCCACGATTTCAAGCTATGTAGACAAACATGCCAAGAACAGGTTTCCCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000185354.2 |
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| 3UTR-3UTR TCA 90 bp | TCAGAGCTTTCACCTGGGAGCGCAGGGGTAGGGGGACCGGTGATGTCAGAGTCCCATAGGCCAGCATGGTaGCCCCCTCTGGCAGGACTG | + |
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Preference number: 2 (lower is better) Translates to: SELSPGSAGVGGPVMSESHRPAW*PPLAGL Trigger: CAGTCCTGCCAGAGGGGGTCACCATGCTGGCCTATG...GGACTCTGACATCACCGGTCCCCCTACCCCTGCGCTCCCAGGTGAAAGCTCTGA 63% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000185354.2 |
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| 3UTR CAA 90 bp | CGGTACAGGAATTTTGAGGAAACCCTGACATTGAAGCCAAGACACTaGGAGTCATGCCACTGTTTGTTCTCAGTGCTAAGGGTGACTCTG | + |
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Preference number: 2 (lower is better) Translates to: RYRNFEETLTLKPRH*ESCHCLFSVLRVTL Trigger: CAGAGTCACCCTTAGCACTGAGAACAAACAGTGGCATGACTCCAAGTGTCTTGGCTTCAATGTCAGGGTTTCCTCAAAATTCCTGTACCG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000170525.3 ENSMUST00000185354.2 ENSMUST00000189759.7 ENSMUST00000190536.2 ENSMUST00000190680.2 |
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| 3UTR CAA 90 bp | ATGGTGACCCCCTCTGGCAGGACTGCTGAGAAAGTCTTTCAGAACTaGCTTGAAGATGTAGACAATTTCCCAGGGAAGTACATCGTTTTC | + |
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Preference number: 2 (lower is better) Translates to: MVTPSGRTAEKVFQN*LEDVDNFPGKYIVF Trigger: GAAAACGATGTACTTCCCTGGGAAATTGTCTACATCTTCAAGCAAGTTCTGAAAGACTTTCTCAGCAGTCCTGCCAGAGGGGGTCACCAT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000185354.2 |
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| 3UTR-3UTR TCA 90 bp | GTGACCCCCTCTGGCAGGACTGCTGAGAAAGTCTTTCAGAACTTGCTTGAAGATCATCGGTACACGGATTaGGTTTATATAATGAGGCAG | + |
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Preference number: 2 (lower is better) Translates to: VTPSGRTAEKVFQNLLEDHRYTD*VYIMRQ Trigger: CTGCCTCATTATATAAACTCAATCCGTGTACCGATG...ATCTTCAAGCAAGTTCTGAAAGACTTTCTCAGCAGTCCTGCCAGAGGGGGTCAC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000185354.2 |
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| 3UTR-3UTR TCA 90 bp | AGAAGTTGGCGGTACAGGAATTTTGAGGAAACCCTGACATTGAAGCCAAGACACAGGCAGCTTTTAGTCTaGATCTCACACACCACAAGA | + |
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Preference number: 2 (lower is better) Translates to: RSWRYRNFEETLTLKPRHRQLLV*ISHTTR Trigger: TCTTGTGGTGTGTGAGATTCAGACTAAAAGCTGCCT...GTGTCTTGGCTTCAATGTCAGGGTTTCCTCAAAATTCCTGTACCGCCAACTTCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000185354.2 |
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| 3UTR TCA 72 bp | GGACCGGTGATGTCAGAGTCCCATAGGCCAGCATGGTaGCCCCCTCTGGCAGGACTGCTGAGAAAGTCTTTC | + |
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Preference number: 3 (lower is better) Translates to: GPVMSESHRPAW*PPLAGLLRKSF Trigger: GAAAGACTTTCTCAGCAGTCCTGCCAGAGGGGGTCACCATGCTGGCCTATGGGACTCTGACATCACCGGTCC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000185354.2 |
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| 3UTR GCA 72 bp | GAAACCCTGACATTGAAGCCAAGACACTTGGAGTCATaGCACTGTTTGTTCTCAGTGCTAAGGGTGACTCTG | + |
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Preference number: 3 (lower is better) Translates to: ETLTLKPRHLES*HCLFSVLRVTL Trigger: CAGAGTCACCCTTAGCACTGAGAACAAACAGTGGCATGACTCCAAGTGTCTTGGCTTCAATGTCAGGGTTTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000170525.3 ENSMUST00000185354.2 ENSMUST00000189759.7 ENSMUST00000190536.2 ENSMUST00000190680.2 |
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| 3UTR CCA 72 bp | TGTTCTTGGCATGTTTGTCTACATAGCTTGAAATCGTaGGTATCTCCTCTTTGTCTGGCCTCTCAGAGCTTT | + |
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Preference number: 3 (lower is better) Translates to: CSWHVCLHSLKS*VSPLCLASQSF Trigger: AAAGCTCTGAGAGGCCAGACAAAGAGGAGATACCCACGATTTCAAGCTATGTAGACAAACATGCCAAGAACA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000185354.2 |
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| CDS-3UTR TCA 90 bp | GGAGTCATGCCACTGTTTGTTCTCAGTGCTAAGGGTGACTCTGAGGTGGTCTTGCATAGGCCAGCATGGTaGCCCCCTCTGGCAGGACTG | + |
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Preference number: 4 (lower is better) Translates to: GVMPLFVLSAKGDSEVVLHRPAW*PPLAGL Trigger: CAGTCCTGCCAGAGGGGGTCACCATGCTGGCCTATG...CAAGACCACCTCAGAGTCACCCTTAGCACTGAGAACAAACAGTGGCATGACTCC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000170525.3 ENSMUST00000189759.7 ENSMUST00000190536.2 ENSMUST00000190680.2 |
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| CDS-3UTR CCA 90 bp | GCCAAGACACTTGGAGTCATGCCACTGTTTGTTCTCAGTGCTAAGGGTGACTCTCTCAGAGCTTTCACCTaGGAGCGCAGGGGTAGGGGG | + |
|
Preference number: 4 (lower is better) Translates to: AKTLGVMPLFVLSAKGDSLRAFT*ERRGRG Trigger: CCCCCTACCCCTGCGCTCCCAGGTGAAAGCTCTGAG...AGAGTCACCCTTAGCACTGAGAACAAACAGTGGCATGACTCCAAGTGTCTTGGC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000170525.3 ENSMUST00000189759.7 ENSMUST00000190536.2 ENSMUST00000190680.2 |
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| CDS-3UTR TCA 90 bp | ACCCTGACATTGAAGCCAAGACACTTGGAGTCATGCCACTGTTTGTTCTCAGTGCATAGGCCAGCATGGTaGCCCCCTCTGGCAGGACTG | + |
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Preference number: 4 (lower is better) Translates to: TLTLKPRHLESCHCLFSVHRPAW*PPLAGL Trigger: CAGTCCTGCCAGAGGGGGTCACCATGCTGGCCTATG...CACTGAGAACAAACAGTGGCATGACTCCAAGTGTCTTGGCTTCAATGTCAGGGT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000170525.3 ENSMUST00000189759.7 ENSMUST00000190536.2 ENSMUST00000190680.2 |
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| CDS-3UTR CCA 90 bp | TGGCGGTACAGGAATTTTGAGGAAACCCTGACATTGAAGCCAAGACACTTGGAGCTCAGAGCTTTCACCTaGGAGCGCAGGGGTAGGGGG | + |
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Preference number: 4 (lower is better) Translates to: WRYRNFEETLTLKPRHLELRAFT*ERRGRG Trigger: CCCCCTACCCCTGCGCTCCCAGGTGAAAGCTCTGAG...CTCCAAGTGTCTTGGCTTCAATGTCAGGGTTTCCTCAAAATTCCTGTACCGCCA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000170525.3 ENSMUST00000189759.7 ENSMUST00000190536.2 ENSMUST00000190680.2 |
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| CDS-3UTR CCA 90 bp | ACCCTGACATTGAAGCCAAGACACTTGGAGTCATGCCACTGTTTGTTCTCAGTGCTCAGAGCTTTCACCTaGGAGCGCAGGGGTAGGGGG | + |
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Preference number: 4 (lower is better) Translates to: TLTLKPRHLESCHCLFSVLRAFT*ERRGRG Trigger: CCCCCTACCCCTGCGCTCCCAGGTGAAAGCTCTGAG...CACTGAGAACAAACAGTGGCATGACTCCAAGTGTCTTGGCTTCAATGTCAGGGT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000170525.3 ENSMUST00000189759.7 ENSMUST00000190536.2 ENSMUST00000190680.2 |
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| CDS-3UTR TCA 90 bp | AGTTGGCGGTACAGGAATTTTGAGGAAACCCTGACATTGAAGCCAAGACACTTGCATAGGCCAGCATGGTaGCCCCCTCTGGCAGGACTG | + |
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Preference number: 4 (lower is better) Translates to: SWRYRNFEETLTLKPRHLHRPAW*PPLAGL Trigger: CAGTCCTGCCAGAGGGGGTCACCATGCTGGCCTATG...CAAGTGTCTTGGCTTCAATGTCAGGGTTTCCTCAAAATTCCTGTACCGCCAACT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000170525.3 ENSMUST00000189759.7 ENSMUST00000190536.2 ENSMUST00000190680.2 |
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| CDS-3UTR CCA 90 bp | AGTTGGCGGTACAGGAATTTTGAGGAAACCCTGACATTGAAGCCAAGACACTTGCTCAGAGCTTTCACCTaGGAGCGCAGGGGTAGGGGG | + |
|
Preference number: 4 (lower is better) Translates to: SWRYRNFEETLTLKPRHLLRAFT*ERRGRG Trigger: CCCCCTACCCCTGCGCTCCCAGGTGAAAGCTCTGAG...CAAGTGTCTTGGCTTCAATGTCAGGGTTTCCTCAAAATTCCTGTACCGCCAACT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000170525.3 ENSMUST00000189759.7 ENSMUST00000190536.2 ENSMUST00000190680.2 |
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| CDS-3UTR TCA 90 bp | GGAGTCATGCCACTGTTTGTTCTCAGTGCTAAGGGTGACTCTGAGGTGGTCTTGCTCTGGCAGGACTGCTaGGAAAGTCTTTCAGAACTT | + |
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Preference number: 4 (lower is better) Translates to: GVMPLFVLSAKGDSEVVLLWQDC*ESLSEL Trigger: AAGTTCTGAAAGACTTTCTCAGCAGTCCTGCCAGAG...CAAGACCACCTCAGAGTCACCCTTAGCACTGAGAACAAACAGTGGCATGACTCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000170525.3 ENSMUST00000189759.7 ENSMUST00000190536.2 ENSMUST00000190680.2 |
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| CDS-3UTR GCA 90 bp | GCCAAGACACTTGGAGTCATGCCACTGTTTGTTCTCAGTGCTAAGGGTGACTCTTCGCGCTCCTTCAAATaGCATTTTAACTCCCGAAGC | + |
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Preference number: 4 (lower is better) Translates to: AKTLGVMPLFVLSAKGDSSRSFK*HFNSRS Trigger: GCTTCGGGAGTTAAAATGGCATTTGAAGGAGCGCGA...AGAGTCACCCTTAGCACTGAGAACAAACAGTGGCATGACTCCAAGTGTCTTGGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000170525.3 ENSMUST00000185354.2 ENSMUST00000189759.7 ENSMUST00000190536.2 |
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| CDS-3UTR GCA 90 bp | TGGCGGTACAGGAATTTTGAGGAAACCCTGACATTGAAGCCAAGACACTTGGAGTCGCGCTCCTTCAAATaGCATTTTAACTCCCGAAGC | + |
|
Preference number: 4 (lower is better) Translates to: WRYRNFEETLTLKPRHLESRSFK*HFNSRS Trigger: GCTTCGGGAGTTAAAATGGCATTTGAAGGAGCGCGA...CTCCAAGTGTCTTGGCTTCAATGTCAGGGTTTCCTCAAAATTCCTGTACCGCCA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000170525.3 ENSMUST00000185354.2 ENSMUST00000189759.7 ENSMUST00000190536.2 |
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| CDS-3UTR TCA 90 bp | GCCAAGACACTTGGAGTCATGCCACTGTTTGTTCTCAGTGCTAAGGGTGACTCTTTTGTCTACATAGCTTaGAATCGTGGGTATCTCCTC | + |
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Preference number: 4 (lower is better) Translates to: AKTLGVMPLFVLSAKGDSFVYIA*NRGYLL Trigger: GAGGAGATACCCACGATTTCAAGCTATGTAGACAAA...AGAGTCACCCTTAGCACTGAGAACAAACAGTGGCATGACTCCAAGTGTCTTGGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000170525.3 ENSMUST00000189759.7 ENSMUST00000190536.2 ENSMUST00000190680.2 |
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| CDS-3UTR GCA 90 bp | AGTTGGCGGTACAGGAATTTTGAGGAAACCCTGACATTGAAGCCAAGACACTTGTCGCGCTCCTTCAAATaGCATTTTAACTCCCGAAGC | + |
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Preference number: 4 (lower is better) Translates to: SWRYRNFEETLTLKPRHLSRSFK*HFNSRS Trigger: GCTTCGGGAGTTAAAATGGCATTTGAAGGAGCGCGA...CAAGTGTCTTGGCTTCAATGTCAGGGTTTCCTCAAAATTCCTGTACCGCCAACT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000170525.3 ENSMUST00000185354.2 ENSMUST00000189759.7 ENSMUST00000190536.2 |
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| CDS-3UTR GCA 90 bp | AGAAGTTGGCGGTACAGGAATTTTGAGGAAACCCTGACATTGAAGCCAAGACACTCGCGCTCCTTCAAATaGCATTTTAACTCCCGAAGC | + |
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Preference number: 4 (lower is better) Translates to: RSWRYRNFEETLTLKPRHSRSFK*HFNSRS Trigger: GCTTCGGGAGTTAAAATGGCATTTGAAGGAGCGCGA...GTGTCTTGGCTTCAATGTCAGGGTTTCCTCAAAATTCCTGTACCGCCAACTTCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000170525.3 ENSMUST00000185354.2 ENSMUST00000189759.7 ENSMUST00000190536.2 |
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| 3UTR CAA 72 bp | CCCTCTGGCAGGACTGCTGAGAAAGTCTTTCAGAACTaGCTTGAAGATGTAGACAATTTCCCAGGGAAGTAC | + |
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Preference number: 4 (lower is better) Translates to: PSGRTAEKVFQN*LEDVDNFPGKY Trigger: GTACTTCCCTGGGAAATTGTCTACATCTTCAAGCAAGTTCTGAAAGACTTTCTCAGCAGTCCTGCCAGAGGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000185354.2 |
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| CDS-3UTR TCA 90 bp | GCCAAGACACTTGGAGTCATGCCACTGTTTGTTCTCAGTGCTAAGGGTGACTCTCTTTCAGAACTTGCTTaGAGATGTAGACAATTTCCC | + |
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Preference number: 4 (lower is better) Translates to: AKTLGVMPLFVLSAKGDSLSELA*RCRQFP Trigger: GGGAAATTGTCTACATCTTCAAGCAAGTTCTGAAAG...AGAGTCACCCTTAGCACTGAGAACAAACAGTGGCATGACTCCAAGTGTCTTGGC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000170525.3 ENSMUST00000189759.7 ENSMUST00000190536.2 ENSMUST00000190680.2 |
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| CDS-3UTR TCA 90 bp | ACCCTGACATTGAAGCCAAGACACTTGGAGTCATGCCACTGTTTGTTCTCAGTGTTTGTCTACATAGCTTaGAATCGTGGGTATCTCCTC | + |
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Preference number: 4 (lower is better) Translates to: TLTLKPRHLESCHCLFSVFVYIA*NRGYLL Trigger: GAGGAGATACCCACGATTTCAAGCTATGTAGACAAA...CACTGAGAACAAACAGTGGCATGACTCCAAGTGTCTTGGCTTCAATGTCAGGGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000170525.3 ENSMUST00000189759.7 ENSMUST00000190536.2 ENSMUST00000190680.2 |
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| CDS-3UTR TCA 90 bp | CCTGACATTGAAGCCAAGACACTTGGAGTCATGCCACTGTTTGTTCTCAGTGCTTTTGTCTACATAGCTTaGAATCGTGGGTATCTCCTC | + |
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Preference number: 4 (lower is better) Translates to: PDIEAKTLGVMPLFVLSAFVYIA*NRGYLL Trigger: GAGGAGATACCCACGATTTCAAGCTATGTAGACAAA...AGCACTGAGAACAAACAGTGGCATGACTCCAAGTGTCTTGGCTTCAATGTCAGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000170525.3 ENSMUST00000189759.7 ENSMUST00000190536.2 ENSMUST00000190680.2 |
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| CDS-3UTR TCA 90 bp | TGGCGGTACAGGAATTTTGAGGAAACCCTGACATTGAAGCCAAGACACTTGGAGCTTTCAGAACTTGCTTaGAGATGTAGACAATTTCCC | + |
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Preference number: 4 (lower is better) Translates to: WRYRNFEETLTLKPRHLELSELA*RCRQFP Trigger: GGGAAATTGTCTACATCTTCAAGCAAGTTCTGAAAG...CTCCAAGTGTCTTGGCTTCAATGTCAGGGTTTCCTCAAAATTCCTGTACCGCCA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000170525.3 ENSMUST00000189759.7 ENSMUST00000190536.2 ENSMUST00000190680.2 |
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| CDS-3UTR TCA 90 bp | AGTTGGCGGTACAGGAATTTTGAGGAAACCCTGACATTGAAGCCAAGACACTTGCTTTCAGAACTTGCTTaGAGATGTAGACAATTTCCC | + |
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Preference number: 4 (lower is better) Translates to: SWRYRNFEETLTLKPRHLLSELA*RCRQFP Trigger: GGGAAATTGTCTACATCTTCAAGCAAGTTCTGAAAG...CAAGTGTCTTGGCTTCAATGTCAGGGTTTCCTCAAAATTCCTGTACCGCCAACT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000170525.3 ENSMUST00000189759.7 ENSMUST00000190536.2 ENSMUST00000190680.2 |
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| CDS-3UTR TCA 90 bp | ATTGAAGCCAAGACACTTGGAGTCATGCCACTGTTTGTTCTCAGTGCTAAGGGTCTTTCAGAACTTGCTTaGAGATGTAGACAATTTCCC | + |
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Preference number: 4 (lower is better) Translates to: IEAKTLGVMPLFVLSAKGLSELA*RCRQFP Trigger: GGGAAATTGTCTACATCTTCAAGCAAGTTCTGAAAG...ACCCTTAGCACTGAGAACAAACAGTGGCATGACTCCAAGTGTCTTGGCTTCAAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000170525.3 ENSMUST00000189759.7 ENSMUST00000190536.2 ENSMUST00000190680.2 |
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| CDS-3UTR CAA 90 bp | GTGACCCCCTCTGGCAGGACTGCTGAGAAAGTCTTTCAGAACTTGCTTGAAGATCCCGAAGCAGAGTCTTaGTCACTACCTCAGAGCCAG | + |
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Preference number: 5 (lower is better) Translates to: VTPSGRTAEKVFQNLLEDPEAES*SLPQSQ Trigger: CTGGCTCTGAGGTAGTGACAAAGACTCTGCTTCGGG...ATCTTCAAGCAAGTTCTGAAAGACTTTCTCAGCAGTCCTGCCAGAGGGGGTCAC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000185354.2 |
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| CDS-3UTR CAA 90 bp | ACACTTGGAGTCATGCCACTGTTTGTTCTCAGTGCTAAGGGTGACTCTGAGGTGCCCGAAGCAGAGTCTTaGTCACTACCTCAGAGCCAG | + |
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Preference number: 5 (lower is better) Translates to: TLGVMPLFVLSAKGDSEVPEAES*SLPQSQ Trigger: CTGGCTCTGAGGTAGTGACAAAGACTCTGCTTCGGG...CACCTCAGAGTCACCCTTAGCACTGAGAACAAACAGTGGCATGACTCCAAGTGT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000170525.3 ENSMUST00000185354.2 ENSMUST00000189759.7 ENSMUST00000190536.2 |
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| CDS-3UTR CAA 90 bp | GGAGTCATGCCACTGTTTGTTCTCAGTGCTAAGGGTGACTCTGAGGTGGTCTTGGTGGGTATCTCCTCTTaGTCTGGCCTCTCAGAGCTT | + |
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Preference number: 5 (lower is better) Translates to: GVMPLFVLSAKGDSEVVLVGISS*SGLSEL Trigger: AAGCTCTGAGAGGCCAGACAAAGAGGAGATACCCAC...CAAGACCACCTCAGAGTCACCCTTAGCACTGAGAACAAACAGTGGCATGACTCC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000170525.3 ENSMUST00000189759.7 ENSMUST00000190536.2 ENSMUST00000190680.2 |
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| CDS-3UTR CAA 90 bp | ATTGAAGCCAAGACACTTGGAGTCATGCCACTGTTTGTTCTCAGTGCTAAGGGTCCCGAAGCAGAGTCTTaGTCACTACCTCAGAGCCAG | + |
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Preference number: 5 (lower is better) Translates to: IEAKTLGVMPLFVLSAKGPEAES*SLPQSQ Trigger: CTGGCTCTGAGGTAGTGACAAAGACTCTGCTTCGGG...ACCCTTAGCACTGAGAACAAACAGTGGCATGACTCCAAGTGTCTTGGCTTCAAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000170525.3 ENSMUST00000185354.2 ENSMUST00000189759.7 ENSMUST00000190536.2 |
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| CDS-3UTR CAA 90 bp | AGTTGGCGGTACAGGAATTTTGAGGAAACCCTGACATTGAAGCCAAGACACTTGCCCGAAGCAGAGTCTTaGTCACTACCTCAGAGCCAG | + |
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Preference number: 5 (lower is better) Translates to: SWRYRNFEETLTLKPRHLPEAES*SLPQSQ Trigger: CTGGCTCTGAGGTAGTGACAAAGACTCTGCTTCGGG...CAAGTGTCTTGGCTTCAATGTCAGGGTTTCCTCAAAATTCCTGTACCGCCAACT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000170525.3 ENSMUST00000185354.2 ENSMUST00000189759.7 ENSMUST00000190536.2 |
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| CDS-3UTR CAA 90 bp | ACACTTGGAGTCATGCCACTGTTTGTTCTCAGTGCTAAGGGTGACTCTGAGGTGGTTTGTCTACATAGCTaGAAATCGTGGGTATCTCCT | + |
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Preference number: 5 (lower is better) Translates to: TLGVMPLFVLSAKGDSEVVCLHS*KSWVSP Trigger: AGGAGATACCCACGATTTCAAGCTATGTAGACAAAC...CACCTCAGAGTCACCCTTAGCACTGAGAACAAACAGTGGCATGACTCCAAGTGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000170525.3 ENSMUST00000189759.7 ENSMUST00000190536.2 ENSMUST00000190680.2 |
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| CDS-3UTR CAA 90 bp | CCTGACATTGAAGCCAAGACACTTGGAGTCATGCCACTGTTTGTTCTCAGTGCTGTTTGTCTACATAGCTaGAAATCGTGGGTATCTCCT | + |
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Preference number: 5 (lower is better) Translates to: PDIEAKTLGVMPLFVLSAVCLHS*KSWVSP Trigger: AGGAGATACCCACGATTTCAAGCTATGTAGACAAAC...AGCACTGAGAACAAACAGTGGCATGACTCCAAGTGTCTTGGCTTCAATGTCAGG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000170525.3 ENSMUST00000189759.7 ENSMUST00000190536.2 ENSMUST00000190680.2 |
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| CDS-3UTR CAA 90 bp | AGAAGTTGGCGGTACAGGAATTTTGAGGAAACCCTGACATTGAAGCCAAGACACGTTTGTCTACATAGCTaGAAATCGTGGGTATCTCCT | + |
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Preference number: 5 (lower is better) Translates to: RSWRYRNFEETLTLKPRHVCLHS*KSWVSP Trigger: AGGAGATACCCACGATTTCAAGCTATGTAGACAAAC...GTGTCTTGGCTTCAATGTCAGGGTTTCCTCAAAATTCCTGTACCGCCAACTTCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000170525.3 ENSMUST00000189759.7 ENSMUST00000190536.2 ENSMUST00000190680.2 |
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| CDS-3UTR CAA 90 bp | ATTGAAGCCAAGACACTTGGAGTCATGCCACTGTTTGTTCTCAGTGCTAAGGGTGTTTGTCTACATAGCTaGAAATCGTGGGTATCTCCT | + |
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Preference number: 5 (lower is better) Translates to: IEAKTLGVMPLFVLSAKGVCLHS*KSWVSP Trigger: AGGAGATACCCACGATTTCAAGCTATGTAGACAAAC...ACCCTTAGCACTGAGAACAAACAGTGGCATGACTCCAAGTGTCTTGGCTTCAAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000170525.3 ENSMUST00000189759.7 ENSMUST00000190536.2 ENSMUST00000190680.2 |
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| CDS TCA 90 bp | TTTTCTGCCAAAAGTTCTCTAAATCTGCTGAGAACGGTTCCAGCTTaGCAAGGTTGTACTTGTGAGCACAGAACTTCCAGTTGTCTTTGT | + |
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Preference number: 5 (lower is better) Translates to: FSAKSSLNLLRTVPA*QGCTCEHRTSSCLC Trigger: ACAAAGACAACTGGAAGTTCTGTGCTCACAAGTACAACCTTGTCAAGCTGGAACCGTTCTCAGCAGATTTAGAGAACTTTTGGCAGAAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000170525.3 ENSMUST00000189759.7 ENSMUST00000190536.2 ENSMUST00000190680.2 |
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| CDS GCA 90 bp | TGTTCATTTTCGATCTCATGTATTAATCTCTCGCGCTCCTTCAAATaGCATTTTAACTCCCGAAGCAGAGTCTTTGTCACTACCTCAGAG | + |
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Preference number: 5 (lower is better) Translates to: CSFSISCINLSRSFK*HFNSRSRVFVTTSE Trigger: CTCTGAGGTAGTGACAAAGACTCTGCTTCGGGAGTTAAAATGGCATTTGAAGGAGCGCGAGAGATTAATACATGAGATCGAAAATGAACA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000170525.3 ENSMUST00000185354.2 ENSMUST00000189759.7 ENSMUST00000190536.2 |
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| CDS GCA 90 bp | TTGCTTGAAGATGTAGACAATTTCCCAGGGAAGTACATCGTTTTCTaGCAAAAGTTCTCTAAATCTGCTGAGAACGGTTCCAGCTTGACA | + |
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Preference number: 5 (lower is better) Translates to: LLEDVDNFPGKYIVF*QKFSKSAENGSSLT Trigger: TGTCAAGCTGGAACCGTTCTCAGCAGATTTAGAGAACTTTTGGCAGAAAACGATGTACTTCCCTGGGAAATTGTCTACATCTTCAAGCAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000170525.3 ENSMUST00000189759.7 ENSMUST00000190536.2 ENSMUST00000190680.2 |
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| CDS TCA 72 bp | GCTGAGAACGGTTCCAGCTTGACAAGGTTGTACTTGTaGGCACAGAACTTCCAGTTGTCTTTGTTCGGTAGC | + |
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Preference number: 6 (lower is better) Translates to: AENGSSLTRLYL*AQNFQLSLFGS Trigger: GCTACCGAACAAAGACAACTGGAAGTTCTGTGCTCACAAGTACAACCTTGTCAAGCTGGAACCGTTCTCAGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000170525.3 ENSMUST00000185354.2 ENSMUST00000189759.7 ENSMUST00000190536.2 ENSMUST00000190680.2 |
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| CDS CAA 90 bp | TCTCGCGCTCCTTCAAATGCCATTTTAACTCCCGAAGCAGAGTCTTaGTCACTACCTCAGAGCCAGCGTAGCGTGTTTGTTTGTAGGAAT | + |
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Preference number: 6 (lower is better) Translates to: SRAPSNAILTPEAES*SLPQSQRSVFVCRN Trigger: ATTCCTACAAACAAACACGCTACGCTGGCTCTGAGGTAGTGACAAAGACTCTGCTTCGGGAGTTAAAATGGCATTTGAAGGAGCGCGAGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000170525.3 ENSMUST00000185354.2 ENSMUST00000189759.7 ENSMUST00000190536.2 |
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| CDS CAA 72 bp | CCTTCAAATGCCATTTTAACTCCCGAAGCAGAGTCTTaGTCACTACCTCAGAGCCAGCGTAGCGTGTTTGTT | + |
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Preference number: 6 (lower is better) Translates to: PSNAILTPEAES*SLPQSQRSVFV Trigger: AACAAACACGCTACGCTGGCTCTGAGGTAGTGACAAAGACTCTGCTTCGGGAGTTAAAATGGCATTTGAAGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000170525.3 ENSMUST00000185354.2 ENSMUST00000189759.7 ENSMUST00000190536.2 |
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| CDS CAA 90 bp | CCGAAGCAGAGTCTTTGTCACTACCTCAGAGCCAGCGTAGCGTGTTaGTTTGTAGGAATAATTTCTTGGCCATTTCACCCAGCTAAAAAG | + |
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Preference number: 6 (lower is better) Translates to: PKQSLCHYLRASVAC*FVGIISWPFHPAKK Trigger: CTTTTTAGCTGGGTGAAATGGCCAAGAAATTATTCCTACAAACAAACACGCTACGCTGGCTCTGAGGTAGTGACAAAGACTCTGCTTCGG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000170525.3 ENSMUST00000185354.2 ENSMUST00000189759.7 ENSMUST00000190536.2 |
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| CDS CAA 72 bp | AGTCTTTGTCACTACCTCAGAGCCAGCGTAGCGTGTTaGTTTGTAGGAATAATTTCTTGGCCATTTCACCCA | + |
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Preference number: 6 (lower is better) Translates to: SLCHYLRASVAC*FVGIISWPFHP Trigger: TGGGTGAAATGGCCAAGAAATTATTCCTACAAACAAACACGCTACGCTGGCTCTGAGGTAGTGACAAAGACT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000170525.3 ENSMUST00000185354.2 ENSMUST00000189759.7 ENSMUST00000190536.2 |
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| CDS TCA 72 bp | AAAAGTTCTCTAAATCTGCTGAGAACGGTTCCAGCTTaGCAAGGTTGTACTTGTGAGCACAGAACTTCCAGT | + |
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Preference number: 6 (lower is better) Translates to: KSSLNLLRTVPA*QGCTCEHRTSS Trigger: ACTGGAAGTTCTGTGCTCACAAGTACAACCTTGTCAAGCTGGAACCGTTCTCAGCAGATTTAGAGAACTTTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000170525.3 ENSMUST00000189759.7 ENSMUST00000190536.2 ENSMUST00000190680.2 |
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| CDS GCA 72 bp | TCGATCTCATGTATTAATCTCTCGCGCTCCTTCAAATaGCATTTTAACTCCCGAAGCAGAGTCTTTGTCACT | + |
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Preference number: 6 (lower is better) Translates to: SISCINLSRSFK*HFNSRSRVFVT Trigger: AGTGACAAAGACTCTGCTTCGGGAGTTAAAATGGCATTTGAAGGAGCGCGAGAGATTAATACATGAGATCGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000170525.3 ENSMUST00000185354.2 ENSMUST00000189759.7 ENSMUST00000190536.2 |
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| CDS GCA 72 bp | GATGTAGACAATTTCCCAGGGAAGTACATCGTTTTCTaGCAAAAGTTCTCTAAATCTGCTGAGAACGGTTCC | + |
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Preference number: 6 (lower is better) Translates to: DVDNFPGKYIVF*QKFSKSAENGS Trigger: GGAACCGTTCTCAGCAGATTTAGAGAACTTTTGGCAGAAAACGATGTACTTCCCTGGGAAATTGTCTACATC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000170525.3 ENSMUST00000189759.7 ENSMUST00000190536.2 ENSMUST00000190680.2 |
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