Pregenerated sensors for RD3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000049353Ensembl transcript IDs: ENSMUST00000175680.3, ENSMUST00000180463.3, ENSMUST00000181512.8
Found 142 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CTGGGGCGCCCTGAACTCCGGCATGCTCCAGGTGCGCGGCGGGGGTaGCGCATCGCGCTCCACATCCTCCGAGATGGTTCGGATGTCACT | + |
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Preference number: 1 (lower is better) Translates to: LGRPELRHAPGARRG*RIALHILRDGSDVT Trigger: AGTGACATCCGAACCATCTCGGAGGATGTGGAGCGCGATGCGCCACCCCCGCCGCGCACCTGGAGCATGCCGGAGTTCAGGGCGCCCCAG 69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000175680.3 ENSMUST00000181512.8 |
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| 3UTR CCA 90 bp | CCGTTATTCCTCCTGAGGGTGATTGCCCTGGGTGGTCAGTCGGCCTaGGGCGCCCTGAACTCCGGCATGCTCCAGGTGCGCGGCGGGGGT | + |
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Preference number: 1 (lower is better) Translates to: PLFLLRVIALGGQSA*GALNSGMLQVRGGG Trigger: ACCCCCGCCGCGCACCTGGAGCATGCCGGAGTTCAGGGCGCCCCAGGCCGACTGACCACCCAGGGCAATCACCCTCAGGAGGAATAACGG 69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000175680.3 ENSMUST00000181512.8 |
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| 3UTR CCA 90 bp | AGGTGCGCGGCGGGGGTGGCGCATCGCGCTCCACATCCTCCGAGATaGTTCGGATGTCACTGGCAAAGGGTGCGATGCGAGCGCGGGTCT | + |
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Preference number: 1 (lower is better) Translates to: RCAAGVAHRAPHPPR*FGCHWQRVRCERGS Trigger: AGACCCGCGCTCGCATCGCACCCTTTGCCAGTGACATCCGAACCATCTCGGAGGATGTGGAGCGCGATGCGCCACCCCCGCCGCGCACCT 68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000175680.3 ENSMUST00000181512.8 |
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| 3UTR GCA 90 bp | GCGCTCCACATCCTCCGAGATGGTTCGGATGTCACTGGCAAAGGGTaGGATGCGAGCGCGGGTCTTGAAGGACGACAGGCTGCCGCGGGG | + |
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Preference number: 1 (lower is better) Translates to: ALHILRDGSDVTGKG*DASAGLEGRQAAAG Trigger: CCCCGCGGCAGCCTGTCGTCCTTCAAGACCCGCGCTCGCATCGCACCCTTTGCCAGTGACATCCGAACCATCTCGGAGGATGTGGAGCGC 66% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000175680.3 ENSMUST00000181512.8 |
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| 3UTR TCA 90 bp | TGGTTCGGATGTCACTGGCAAAGGGTGCGATGCGAGCGCGGGTCTTaGAGGACGACAGGCTGCCGCGGGGCCTCAAGCTCCACTGACGTG | + |
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Preference number: 1 (lower is better) Translates to: WFGCHWQRVRCERGS*RTTGCRGASSSTDV Trigger: CACGTCAGTGGAGCTTGAGGCCCCGCGGCAGCCTGTCGTCCTTCAAGACCCGCGCTCGCATCGCACCCTTTGCCAGTGACATCCGAACCA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000175680.3 ENSMUST00000181512.8 |
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| 3UTR CCA 90 bp | CAGAGTCACCAGCCCGTTATTCCTCCTGAGGGTGATTGCCCTGGGTaGTCAGTCGGCCTGGGGCGCCCTGAACTCCGGCATGCTCCAGGT | + |
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Preference number: 1 (lower is better) Translates to: QSHQPVIPPEGDCPG*SVGLGRPELRHAPG Trigger: ACCTGGAGCATGCCGGAGTTCAGGGCGCCCCAGGCCGACTGACCACCCAGGGCAATCACCCTCAGGAGGAATAACGGGCTGGTGACTCTG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000175680.3 ENSMUST00000181512.8 |
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| 3UTR CCA 90 bp | AGTTGGCTCCGTGGTCTAGCAGTGTTGCTTGATGGGTCTCCTGGTTaGGGTAGGTGGGGAGGTTCCGGCGCTAGTGACAGAGTCACCAGC | + |
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Preference number: 1 (lower is better) Translates to: SWLRGLAVLLDGSPG*GRWGGSGASDRVTS Trigger: GCTGGTGACTCTGTCACTAGCGCCGGAACCTCCCCACCTACCCCAACCAGGAGACCCATCAAGCAACACTGCTAGACCACGGAGCCAACT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000175680.3 ENSMUST00000180463.3 ENSMUST00000181512.8 |
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| 3UTR TCA 90 bp | GACTGCTTTGCTCAGGTACTTCCTAGGGAAGCTGGAGAGCAGGTGTaGACAGAAGGATCCCTAGACTTCAGCAGCAGGTTCGCAGGCCTC | + |
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Preference number: 1 (lower is better) Translates to: DCFAQVLPREAGEQV*TEGSLDFSSRFAGL Trigger: GAGGCCTGCGAACCTGCTGCTGAAGTCTAGGGATCCTTCTGTTCACACCTGCTCTCCAGCTTCCCTAGGAAGTACCTGAGCAAAGCAGTC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000175680.3 ENSMUST00000180463.3 ENSMUST00000181512.8 |
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| 3UTR CCA 90 bp | CCCTCTAGGCAAATCAAGCCCCACAAGGGCCTCAGGCAGGAGGCTTaGCAAGCTCTGCTTCACTCAACATTTCCTCCCAACTGTGGAACT | + |
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Preference number: 1 (lower is better) Translates to: PSRQIKPHKGLRQEA*QALLHSTFPPNCGT Trigger: AGTTCCACAGTTGGGAGGAAATGTTGAGTGAAGCAGAGCTTGCCAAGCCTCCTGCCTGAGGCCCTTGTGGGGCTTGATTTGCCTAGAGGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000180463.3 |
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| 3UTR CCA 90 bp | CCCGGAAATTGGGATGAGTATGTGGGCCTTGTGTCTGTGTCAGGCTaGGAAGTGGAGACCTTTTTGCGGAGAAACAGGGCTCAAGTCCTG | + |
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Preference number: 1 (lower is better) Translates to: PGNWDEYVGLVSVSG*EVETFLRRNRAQVL Trigger: CAGGACTTGAGCCCTGTTTCTCCGCAAAAAGGTCTCCACTTCCCAGCCTGACACAGACACAAGGCCCACATACTCATCCCAATTTCCGGG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000175680.3 ENSMUST00000180463.3 ENSMUST00000181512.8 |
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| 3UTR GCA 90 bp | AGCCAGTCAGCTCCTTCATCCTGGCAGCGATGGGTAAGAGGAATGTaGCATCCGATCATTATCCAGATCCCAGTGAAGCAACCCAAAGCC | + |
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Preference number: 1 (lower is better) Translates to: SQSAPSSWQRWVRGM*HPIIIQIPVKQPKA Trigger: GGCTTTGGGTTGCTTCACTGGGATCTGGATAATGATCGGATGGCACATTCCTCTTACCCATCGCTGCCAGGATGAAGGAGCTGACTGGCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000180463.3 |
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| 3UTR TCA 90 bp | TGGACTGGCCATGTTCCATATGATGACATCGCAGGATGGGAGTTATaGTCATCCTGCCTACCCCTAGCCACCTTTCTCAGACAGCAGCCT | + |
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Preference number: 1 (lower is better) Translates to: WTGHVPYDDIAGWEL*SSCLPLATFLRQQP Trigger: AGGCTGCTGTCTGAGAAAGGTGGCTAGGGGTAGGCAGGATGATCATAACTCCCATCCTGCGATGTCATCATATGGAACATGGCCAGTCCA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000175680.3 ENSMUST00000180463.3 ENSMUST00000181512.8 |
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| 3UTR GCA 90 bp | AAATCAAGCCCCACAAGGGCCTCAGGCAGGAGGCTTGGCAAGCTCTaGTTCACTCAACATTTCCTCCCAACTGTGGAACTGTTTGTTTCA | + |
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Preference number: 1 (lower is better) Translates to: KSSPTRASGRRLGKL*FTQHFLPTVELFVS Trigger: TGAAACAAACAGTTCCACAGTTGGGAGGAAATGTTGAGTGAAGCAGAGCTTGCCAAGCCTCCTGCCTGAGGCCCTTGTGGGGCTTGATTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000180463.3 |
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| 3UTR GCA 90 bp | AAGCAGAAGAGTACTGAGGAGGTTGGCAGGGACAGCAGTAGCAGCTaGCTGTCATGCAAGAGCAAGCTCACTACCTCAGGTTTTCCTTTT | + |
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Preference number: 1 (lower is better) Translates to: KQKSTEEVGRDSSSS*LSCKSKLTTSGFPF Trigger: AAAAGGAAAACCTGAGGTAGTGAGCTTGCTCTTGCATGACAGGCAGCTGCTACTGCTGTCCCTGCCAACCTCCTCAGTACTCTTCTGCTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000180463.3 |
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| 3UTR TCA 90 bp | TGTTCTGAGAAATGGAAACCTATGCCATTGGCAGTCAGCATGAGGTaGTCTACGTCATCAGTCACATCTAGGGGTTGGGCTTATGGCTTT | + |
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Preference number: 1 (lower is better) Translates to: CSEKWKPMPLAVSMR*STSSVTSRGWAYGF Trigger: AAAGCCATAAGCCCAACCCCTAGATGTGACTGATGACGTAGATCACCTCATGCTGACTGCCAATGGCATAGGTTTCCATTTCTCAGAACA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000180463.3 |
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| 3UTR TCA 90 bp | AAACCTGTTCTGAGAAATGGAAACCTATGCCATTGGCAGTCAGCATaGGGTGATCTACGTCATCAGTCACATCTAGGGGTTGGGCTTATG | + |
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Preference number: 1 (lower is better) Translates to: KPVLRNGNLCHWQSA*GDLRHQSHLGVGLM Trigger: CATAAGCCCAACCCCTAGATGTGACTGATGACGTAGATCACCTCATGCTGACTGCCAATGGCATAGGTTTCCATTTCTCAGAACAGGTTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000180463.3 |
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| 3UTR TCA 90 bp | CAGAGTTGGGAATTCTCGTTTTGCCCTGATAAGAGAAACCTGTTCTaGGAAATGGAAACCTATGCCATTGGCAGTCAGCATGAGGTGATC | + |
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Preference number: 1 (lower is better) Translates to: QSWEFSFCPDKRNLF*EMETYAIGSQHEVI Trigger: GATCACCTCATGCTGACTGCCAATGGCATAGGTTTCCATTTCTCAGAACAGGTTTCTCTTATCAGGGCAAAACGAGAATTCCCAACTCTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000180463.3 |
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| 3UTR GCA 90 bp | CCCAGTGAAGCAACCCAAAGCCACATCATTCAAAAAGAATATCTGTaGAGTAGACTCAGCACTCAAGAGGCTGAAGCAGCCAAAATAGTG | + |
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Preference number: 1 (lower is better) Translates to: PSEATQSHIIQKEYL*SRLSTQEAEAAKIV Trigger: CACTATTTTGGCTGCTTCAGCCTCTTGAGTGCTGAGTCTACTGCACAGATATTCTTTTTGAATGATGTGGCTTTGGGTTGCTTCACTGGG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000180463.3 |
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| 3UTR-3UTR GCA 90 bp | GGGCGCCCTGAACTCCGGCATGCTCCAGGTGCGCGGCGGGGGTGGCGCATCGCGGTCACTGGCAAAGGGTaGGATGCGAGCGCGGGTCTT | + |
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Preference number: 2 (lower is better) Translates to: GRPELRHAPGARRGWRIAVTGKG*DASAGL Trigger: AAGACCCGCGCTCGCATCGCACCCTTTGCCAGTGAC...CGCGATGCGCCACCCCCGCCGCGCACCTGGAGCATGCCGGAGTTCAGGGCGCCC 71% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000175680.3 ENSMUST00000181512.8 |
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| 3UTR-3UTR CCA 90 bp | GACAGCAGCCTCGGCCCCAGTGGATGGAGATGTAGACATTGGTCCCACCCTATCGGTGGTCAGTCGGCCTaGGGCGCCCTGAACTCCGGC | + |
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Preference number: 2 (lower is better) Translates to: DSSLGPSGWRCRHWSHPIGGQSA*GALNSG Trigger: GCCGGAGTTCAGGGCGCCCCAGGCCGACTGACCACC...GATAGGGTGGGACCAATGTCTACATCTCCATCCACTGGGGCCGAGGCTGCTGTC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000175680.3 ENSMUST00000181512.8 |
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| 3UTR-3UTR GCA 90 bp | TGTGGGCCTTGTGTCTGTGTCAGGCTGGGAAGTGGAGACCTTTTTGCGGAGAAACCGGCATGCTCCAGGTaGGCGGCGGGGGTGGCGCAT | + |
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Preference number: 2 (lower is better) Translates to: CGPCVCVRLGSGDLFAEKPACSR*AAGVAH Trigger: ATGCGCCACCCCCGCCGCGCACCTGGAGCATGCCGG...TTTCTCCGCAAAAAGGTCTCCACTTCCCAGCCTGACACAGACACAAGGCCCACA 62% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000175680.3 ENSMUST00000181512.8 |
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| 3UTR-3UTR GCA 90 bp | GGGATGAGTATGTGGGCCTTGTGTCTGTGTCAGGCTGGGAAGTGGAGACCTTTTCCGGCATGCTCCAGGTaGGCGGCGGGGGTGGCGCAT | + |
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Preference number: 2 (lower is better) Translates to: GMSMWALCLCQAGKWRPFPACSR*AAGVAH Trigger: ATGCGCCACCCCCGCCGCGCACCTGGAGCATGCCGG...AAAAGGTCTCCACTTCCCAGCCTGACACAGACACAAGGCCCACATACTCATCCC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000175680.3 ENSMUST00000181512.8 |
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| 3UTR-3UTR TCA 90 bp | AGGCCTCCAAGCCCTGACTCTGGACTGGCCATGTTCCATATGATGACATCGCAGTGCGAGCGCGGGTCTTaGAGGACGACAGGCTGCCGC | + |
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Preference number: 2 (lower is better) Translates to: RPPSPDSGLAMFHMMTSQCERGS*RTTGCR Trigger: GCGGCAGCCTGTCGTCCTTCAAGACCCGCGCTCGCA...CTGCGATGTCATCATATGGAACATGGCCAGTCCAGAGTCAGGGCTTGGAGGCCT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000175680.3 ENSMUST00000181512.8 |
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| 3UTR-3UTR CCA 90 bp | AGGCCTCCAAGCCCTGACTCTGGACTGGCCATGTTCCATATGATGACATCGCAGGGTGATTGCCCTGGGTaGTCAGTCGGCCTGGGGCGC | + |
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Preference number: 2 (lower is better) Translates to: RPPSPDSGLAMFHMMTSQGDCPG*SVGLGR Trigger: GCGCCCCAGGCCGACTGACCACCCAGGGCAATCACC...CTGCGATGTCATCATATGGAACATGGCCAGTCCAGAGTCAGGGCTTGGAGGCCT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000175680.3 ENSMUST00000181512.8 |
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| 3UTR CAA 90 bp | AAGCAGGTGTGCTCACTGGGTAGTTGGCTCCGTGGTCTAGCAGTGTaGCTTGATGGGTCTCCTGGTTGGGGTAGGTGGGGAGGTTCCGGC | + |
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Preference number: 2 (lower is better) Translates to: KQVCSLGSWLRGLAV*LDGSPGWGRWGGSG Trigger: GCCGGAACCTCCCCACCTACCCCAACCAGGAGACCCATCAAGCAACACTGCTAGACCACGGAGCCAACTACCCAGTGAGCACACCTGCTT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000175680.3 ENSMUST00000180463.3 ENSMUST00000181512.8 |
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| 3UTR-3UTR GCA 90 bp | CCTAGACTTCAGCAGCAGGTTCGCAGGCCTCCAAGCCCTGACTCTGGACTGGCCAGGCTGTGGGTCCCCTaGAGTGAATGTCATCTGGTC | + |
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Preference number: 2 (lower is better) Translates to: PRLQQQVRRPPSPDSGLARLWVP*SECHLV Trigger: GACCAGATGACATTCACTGCAGGGGACCCACAGCCT...GGCCAGTCCAGAGTCAGGGCTTGGAGGCCTGCGAACCTGCTGCTGAAGTCTAGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000175680.3 ENSMUST00000180463.3 ENSMUST00000181512.8 |
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| 3UTR-3UTR CCA 90 bp | GATGAGTATGTGGGCCTTGTGTCTGTGTCAGGCTGGGAAGTGGAGACCTTTTTGGGTGGTCAGTCGGCCTaGGGCGCCCTGAACTCCGGC | + |
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Preference number: 2 (lower is better) Translates to: DEYVGLVSVSGWEVETFLGGQSA*GALNSG Trigger: GCCGGAGTTCAGGGCGCCCCAGGCCGACTGACCACC...CAAAAAGGTCTCCACTTCCCAGCCTGACACAGACACAAGGCCCACATACTCATC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000175680.3 ENSMUST00000181512.8 |
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| 3UTR-3UTR GCA 90 bp | CAGGTTCGCAGGCCTCCAAGCCCTGACTCTGGACTGGCCATGTTCCATATGATGGTCACTGGCAAAGGGTaGGATGCGAGCGCGGGTCTT | + |
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Preference number: 2 (lower is better) Translates to: QVRRPPSPDSGLAMFHMMVTGKG*DASAGL Trigger: AAGACCCGCGCTCGCATCGCACCCTTTGCCAGTGAC...CATCATATGGAACATGGCCAGTCCAGAGTCAGGGCTTGGAGGCCTGCGAACCTG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000175680.3 ENSMUST00000181512.8 |
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| 3UTR-3UTR CCA 90 bp | TGCACTGGGTGCTGGGGACACTCTTTGCTTGCCCTGAACCTTACTTCTACCCCAGATGGGTCTCCTGGTTaGGGTAGGTGGGGAGGTTCC | + |
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Preference number: 2 (lower is better) Translates to: CTGCWGHSLLALNLTSTPDGSPG*GRWGGS Trigger: GGAACCTCCCCACCTACCCCAACCAGGAGACCCATC...TGGGGTAGAAGTAAGGTTCAGGGCAAGCAAAGAGTGTCCCCAGCACCCAGTGCA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000175680.3 ENSMUST00000180463.3 ENSMUST00000181512.8 |
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| 3UTR-3UTR CCA 90 bp | AGGCCTCCAAGCCCTGACTCTGGACTGGCCATGTTCCATATGATGACATCGCAGGATGGGTCTCCTGGTTaGGGTAGGTGGGGAGGTTCC | + |
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Preference number: 2 (lower is better) Translates to: RPPSPDSGLAMFHMMTSQDGSPG*GRWGGS Trigger: GGAACCTCCCCACCTACCCCAACCAGGAGACCCATC...CTGCGATGTCATCATATGGAACATGGCCAGTCCAGAGTCAGGGCTTGGAGGCCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000175680.3 ENSMUST00000180463.3 ENSMUST00000181512.8 |
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| 3UTR-3UTR CCA 90 bp | CAGGTTCGCAGGCCTCCAAGCCCTGACTCTGGACTGGCCATGTTCCATATGATGAGCAGGTGTGCTCACTaGGTAGTTGGCTCCGTGGTC | + |
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Preference number: 2 (lower is better) Translates to: QVRRPPSPDSGLAMFHMMSRCAH*VVGSVV Trigger: GACCACGGAGCCAACTACCCAGTGAGCACACCTGCT...CATCATATGGAACATGGCCAGTCCAGAGTCAGGGCTTGGAGGCCTGCGAACCTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000175680.3 ENSMUST00000180463.3 ENSMUST00000181512.8 |
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| 3UTR-3UTR GCA 90 bp | GATGAGTATGTGGGCCTTGTGTCTGTGTCAGGCTGGGAAGTGGAGACCTTTTTGCCTCCTGAGGGTGATTaGCCTGGGTGGTCAGTCGGC | + |
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Preference number: 2 (lower is better) Translates to: DEYVGLVSVSGWEVETFLPPEGD*PGWSVG Trigger: GCCGACTGACCACCCAGGGCAATCACCCTCAGGAGG...CAAAAAGGTCTCCACTTCCCAGCCTGACACAGACACAAGGCCCACATACTCATC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000175680.3 ENSMUST00000181512.8 |
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| 3UTR-3UTR CCA 90 bp | AGACATTGGTCCCACCCTATCATAGTCCAGCATTCAAGGACTCAGAGGCAAGAAGGTGATTGCCCTGGGTaGTCAGTCGGCCTGGGGCGC | + |
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Preference number: 2 (lower is better) Translates to: RHWSHPIIVQHSRTQRQEGDCPG*SVGLGR Trigger: GCGCCCCAGGCCGACTGACCACCCAGGGCAATCACC...TTCTTGCCTCTGAGTCCTTGAATGCTGGACTATGATAGGGTGGGACCAATGTCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000175680.3 ENSMUST00000181512.8 |
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| 3UTR-3UTR CCA 90 bp | GATGAGTATGTGGGCCTTGTGTCTGTGTCAGGCTGGGAAGTGGAGACCTTTTTGCCTGGTTGGGGTAGGTaGGGAGGTTCCGGCGCTAGT | + |
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Preference number: 2 (lower is better) Translates to: DEYVGLVSVSGWEVETFLPGWGR*GGSGAS Trigger: ACTAGCGCCGGAACCTCCCCACCTACCCCAACCAGG...CAAAAAGGTCTCCACTTCCCAGCCTGACACAGACACAAGGCCCACATACTCATC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000175680.3 ENSMUST00000180463.3 ENSMUST00000181512.8 |
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| 3UTR-3UTR CCA 90 bp | GTGGGCCTTGTGTCTGTGTCAGGCTGGGAAGTGGAGACCTTTTTGCGGAGAAACAGCAGGTGTGCTCACTaGGTAGTTGGCTCCGTGGTC | + |
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Preference number: 2 (lower is better) Translates to: VGLVSVSGWEVETFLRRNSRCAH*VVGSVV Trigger: GACCACGGAGCCAACTACCCAGTGAGCACACCTGCT...GTTTCTCCGCAAAAAGGTCTCCACTTCCCAGCCTGACACAGACACAAGGCCCAC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000175680.3 ENSMUST00000180463.3 ENSMUST00000181512.8 |
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| 3UTR-3UTR CCA 90 bp | AGCCTCGGCCCCAGTGGATGGAGATGTAGACATTGGTCCCACCCTATCATAGTCAGCAGGTGTGCTCACTaGGTAGTTGGCTCCGTGGTC | + |
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Preference number: 2 (lower is better) Translates to: SLGPSGWRCRHWSHPIIVSRCAH*VVGSVV Trigger: GACCACGGAGCCAACTACCCAGTGAGCACACCTGCT...GACTATGATAGGGTGGGACCAATGTCTACATCTCCATCCACTGGGGCCGAGGCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000175680.3 ENSMUST00000180463.3 ENSMUST00000181512.8 |
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| 3UTR-3UTR CCA 90 bp | AGCCTCGGCCCCAGTGGATGGAGATGTAGACATTGGTCCCACCCTATCATAGTCTTGAACAGTCTTCTGTaGGCCCCACCAGCTGCCCTG | + |
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Preference number: 2 (lower is better) Translates to: SLGPSGWRCRHWSHPIIVLNSLL*APPAAL Trigger: CAGGGCAGCTGGTGGGGCCCACAGAAGACTGTTCAA...GACTATGATAGGGTGGGACCAATGTCTACATCTCCATCCACTGGGGCCGAGGCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000175680.3 ENSMUST00000180463.3 ENSMUST00000181512.8 |
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| 3UTR-3UTR GCA 90 bp | TGGGGGACATCCACTCATAGACCATCAGAGCATGAGGCTGCAGGAGACTACCCTAGGCTGTGGGTCCCCTaGAGTGAATGTCATCTGGTC | + |
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Preference number: 2 (lower is better) Translates to: WGTSTHRPSEHEAAGDYPRLWVP*SECHLV Trigger: GACCAGATGACATTCACTGCAGGGGACCCACAGCCT...AGGGTAGTCTCCTGCAGCCTCATGCTCTGATGGTCTATGAGTGGATGTCCCCCA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000175680.3 ENSMUST00000180463.3 ENSMUST00000181512.8 |
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| 3UTR-3UTR CCA 90 bp | TGGGGGACATCCACTCATAGACCATCAGAGCATGAGGCTGCAGGAGACTACCCTTGGTTCGGATGTCACTaGCAAAGGGTGCGATGCGAG | + |
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Preference number: 2 (lower is better) Translates to: WGTSTHRPSEHEAAGDYPWFGCH*QRVRCE Trigger: CTCGCATCGCACCCTTTGCCAGTGACATCCGAACCA...AGGGTAGTCTCCTGCAGCCTCATGCTCTGATGGTCTATGAGTGGATGTCCCCCA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000175680.3 ENSMUST00000181512.8 |
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| 3UTR-3UTR CCA 90 bp | GACAGCAGCCTCGGCCCCAGTGGATGGAGATGTAGACATTGGTCCCACCCTATCTGTCAGGCTGGGAAGTaGAGACCTTTTTGCGGAGAA | + |
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Preference number: 2 (lower is better) Translates to: DSSLGPSGWRCRHWSHPICQAGK*RPFCGE Trigger: TTCTCCGCAAAAAGGTCTCCACTTCCCAGCCTGACA...GATAGGGTGGGACCAATGTCTACATCTCCATCCACTGGGGCCGAGGCTGCTGTC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000175680.3 ENSMUST00000180463.3 ENSMUST00000181512.8 |
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| 3UTR CAA 90 bp | AGCATCACAGCTAAGGTGGGACAAAGCAGAAGAGTACTGAGGAGGTaGGCAGGGACAGCAGTAGCAGCTGCCTGTCATGCAAGAGCAAGC | + |
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Preference number: 2 (lower is better) Translates to: SITAKVGQSRRVLRR*AGTAVAAACHARAS Trigger: GCTTGCTCTTGCATGACAGGCAGCTGCTACTGCTGTCCCTGCCAACCTCCTCAGTACTCTTCTGCTTTGTCCCACCTTAGCTGTGATGCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000180463.3 |
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| 3UTR-3UTR TCA 90 bp | ATCCCGGAAATTGGGATGAGTATGTGGGCCTTGTGTCTGTGTCAGGCTGGGAAGACAGGGCTCAAGTCCTaGCTCTGCCCAGGTATCCAA | + |
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Preference number: 2 (lower is better) Translates to: IPEIGMSMWALCLCQAGKTGLKS*LCPGIQ Trigger: TTGGATACCTGGGCAGAGTCAGGACTTGAGCCCTGT...CTTCCCAGCCTGACACAGACACAAGGCCCACATACTCATCCCAATTTCCGGGAT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000175680.3 ENSMUST00000180463.3 ENSMUST00000181512.8 |
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| 3UTR-3UTR CCA 90 bp | AGTGGATGGAGATGTAGACATTGGTCCCACCCTATCATAGTCCAGCATTCAAGGCCTGGTTGGGGTAGGTaGGGAGGTTCCGGCGCTAGT | + |
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Preference number: 2 (lower is better) Translates to: SGWRCRHWSHPIIVQHSRPGWGR*GGSGAS Trigger: ACTAGCGCCGGAACCTCCCCACCTACCCCAACCAGG...CCTTGAATGCTGGACTATGATAGGGTGGGACCAATGTCTACATCTCCATCCACT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000175680.3 ENSMUST00000180463.3 ENSMUST00000181512.8 |
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| 3UTR-3UTR CCA 90 bp | AGCCTCGGCCCCAGTGGATGGAGATGTAGACATTGGTCCCACCCTATCATAGTCGGGCATCCCGGAAATTaGGATGAGTATGTGGGCCTT | + |
|
Preference number: 2 (lower is better) Translates to: SLGPSGWRCRHWSHPIIVGHPGN*DEYVGL Trigger: AAGGCCCACATACTCATCCCAATTTCCGGGATGCCC...GACTATGATAGGGTGGGACCAATGTCTACATCTCCATCCACTGGGGCCGAGGCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000175680.3 ENSMUST00000180463.3 ENSMUST00000181512.8 |
||
| 3UTR-3UTR CCA 90 bp | TGGGGGACATCCACTCATAGACCATCAGAGCATGAGGCTGCAGGAGACTACCCTGGGCATCCCGGAAATTaGGATGAGTATGTGGGCCTT | + |
|
Preference number: 2 (lower is better) Translates to: WGTSTHRPSEHEAAGDYPGHPGN*DEYVGL Trigger: AAGGCCCACATACTCATCCCAATTTCCGGGATGCCC...AGGGTAGTCTCCTGCAGCCTCATGCTCTGATGGTCTATGAGTGGATGTCCCCCA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000175680.3 ENSMUST00000180463.3 ENSMUST00000181512.8 |
||
| 3UTR CAA 90 bp | AAACCCATTGAATCAAAGCAAACCCCCATCACAACACAGGTCACTTaGTGTGGAGGCTCTGCCCTGACCTGCAGAGAGGGGTTGCCGCAT | + |
|
Preference number: 2 (lower is better) Translates to: KPIESKQTPITTQVT*CGGSALTCREGLPH Trigger: ATGCGGCAACCCCTCTCTGCAGGTCAGGGCAGAGCCTCCACACAAAGTGACCTGTGTTGTGATGGGGGTTTGCTTTGATTCAATGGGTTT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000180463.3 |
||
| 3UTR-3UTR CCA 90 bp | TGGGGGACATCCACTCATAGACCATCAGAGCATGAGGCTGCAGGAGACTACCCTATTGGGATGAGTATGTaGGCCTTGTGTCTGTGTCAG | + |
|
Preference number: 2 (lower is better) Translates to: WGTSTHRPSEHEAAGDYPIGMSM*ALCLCQ Trigger: CTGACACAGACACAAGGCCCACATACTCATCCCAAT...AGGGTAGTCTCCTGCAGCCTCATGCTCTGATGGTCTATGAGTGGATGTCCCCCA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000175680.3 ENSMUST00000180463.3 ENSMUST00000181512.8 |
||
| 3UTR-3UTR CCA 90 bp | AGGCCTCCAAGCCCTGACTCTGGACTGGCCATGTTCCATATGATGACATCGCAGGCAGTGAATGTCATCTaGTCACCAGTAAAGGTGCCA | + |
|
Preference number: 2 (lower is better) Translates to: RPPSPDSGLAMFHMMTSQAVNVI*SPVKVP Trigger: TGGCACCTTTACTGGTGACCAGATGACATTCACTGC...CTGCGATGTCATCATATGGAACATGGCCAGTCCAGAGTCAGGGCTTGGAGGCCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000175680.3 ENSMUST00000180463.3 ENSMUST00000181512.8 |
||
| 3UTR-3UTR TCA 90 bp | GACTCTGGACTGGCCATGTTCCATATGATGACATCGCAGGATGGGAGTTATGATACAGGGCTCAAGTCCTaGCTCTGCCCAGGTATCCAA | + |
|
Preference number: 2 (lower is better) Translates to: DSGLAMFHMMTSQDGSYDTGLKS*LCPGIQ Trigger: TTGGATACCTGGGCAGAGTCAGGACTTGAGCCCTGT...ATCATAACTCCCATCCTGCGATGTCATCATATGGAACATGGCCAGTCCAGAGTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000175680.3 ENSMUST00000180463.3 ENSMUST00000181512.8 |
||
| 3UTR-3UTR TCA 90 bp | CAAAAAGAATATCTGTGCAGTAGACTCAGCACTCAAGAGGCTGAAGCAGCCAAACAGGCCTCCAAGCCCTaGCTCTGGACTGGCCATGTT | + |
|
Preference number: 2 (lower is better) Translates to: QKEYLCSRLSTQEAEAAKQASKP*LWTGHV Trigger: AACATGGCCAGTCCAGAGTCAGGGCTTGGAGGCCTG...TTTGGCTGCTTCAGCCTCTTGAGTGCTGAGTCTACTGCACAGATATTCTTTTTG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000180463.3 |
||
| 3UTR-3UTR TCA 90 bp | TTTTATTTGGACTATAAGGTTCACATGCACTGGGTGCTGGGGACACTCTTTGCTCAGGCCTCCAAGCCCTaGCTCTGGACTGGCCATGTT | + |
|
Preference number: 2 (lower is better) Translates to: FYLDYKVHMHWVLGTLFAQASKP*LWTGHV Trigger: AACATGGCCAGTCCAGAGTCAGGGCTTGGAGGCCTG...AGCAAAGAGTGTCCCCAGCACCCAGTGCATGTGAACCTTATAGTCCAAATAAAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000175680.3 ENSMUST00000180463.3 ENSMUST00000181512.8 |
||
| 3UTR-3UTR CCA 90 bp | CAAGACAGGGTTTCTTTGCGTAGCCCTGGCTATCTTGGAACTCATGCTGTAGACGGGCATCCCGGAAATTaGGATGAGTATGTGGGCCTT | + |
|
Preference number: 2 (lower is better) Translates to: QDRVSLRSPGYLGTHAVDGHPGN*DEYVGL Trigger: AAGGCCCACATACTCATCCCAATTTCCGGGATGCCC...GTCTACAGCATGAGTTCCAAGATAGCCAGGGCTACGCAAAGAAACCCTGTCTTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000180463.3 |
||
| 3UTR-3UTR TCA 90 bp | TTTATTTGGACTATAAGGTTCACATGCACTGGGTGCTGGGGACACTCTTTGCTTGTGGGTCCCCTGCAGTaGATGTCATCTGGTCACCAG | + |
|
Preference number: 2 (lower is better) Translates to: FIWTIRFTCTGCWGHSLLVGPLQ*MSSGHQ Trigger: CTGGTGACCAGATGACATTCACTGCAGGGGACCCAC...AAGCAAAGAGTGTCCCCAGCACCCAGTGCATGTGAACCTTATAGTCCAAATAAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000175680.3 ENSMUST00000180463.3 ENSMUST00000181512.8 |
||
| 3UTR-3UTR CCA 90 bp | TTGCATTTTATTTGGACTATAAGGTTCACATGCACTGGGTGCTGGGGACACTCTTTGAACAGTCTTCTGTaGGCCCCACCAGCTGCCCTG | + |
|
Preference number: 2 (lower is better) Translates to: LHFIWTIRFTCTGCWGHSLNSLL*APPAAL Trigger: CAGGGCAGCTGGTGGGGCCCACAGAAGACTGTTCAA...AGAGTGTCCCCAGCACCCAGTGCATGTGAACCTTATAGTCCAAATAAAATGCAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000175680.3 ENSMUST00000180463.3 ENSMUST00000181512.8 |
||
| 3UTR-3UTR TCA 90 bp | TTGCATTTTATTTGGACTATAAGGTTCACATGCACTGGGTGCTGGGGACACTCTACAGGGCTCAAGTCCTaGCTCTGCCCAGGTATCCAA | + |
|
Preference number: 2 (lower is better) Translates to: LHFIWTIRFTCTGCWGHSTGLKS*LCPGIQ Trigger: TTGGATACCTGGGCAGAGTCAGGACTTGAGCCCTGT...AGAGTGTCCCCAGCACCCAGTGCATGTGAACCTTATAGTCCAAATAAAATGCAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000175680.3 ENSMUST00000180463.3 ENSMUST00000181512.8 |
||
| 3UTR-3UTR GCA 90 bp | TTTATTTGGACTATAAGGTTCACATGCACTGGGTGCTGGGGACACTCTTTGCTTAGGCTGTGGGTCCCCTaGAGTGAATGTCATCTGGTC | + |
|
Preference number: 2 (lower is better) Translates to: FIWTIRFTCTGCWGHSLLRLWVP*SECHLV Trigger: GACCAGATGACATTCACTGCAGGGGACCCACAGCCT...AAGCAAAGAGTGTCCCCAGCACCCAGTGCATGTGAACCTTATAGTCCAAATAAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000175680.3 ENSMUST00000180463.3 ENSMUST00000181512.8 |
||
| 3UTR-3UTR CCA 90 bp | GACTCTGGACTGGCCATGTTCCATATGATGACATCGCAGGATGGGAGTTATGATTGTCAGGCTGGGAAGTaGAGACCTTTTTGCGGAGAA | + |
|
Preference number: 2 (lower is better) Translates to: DSGLAMFHMMTSQDGSYDCQAGK*RPFCGE Trigger: TTCTCCGCAAAAAGGTCTCCACTTCCCAGCCTGACA...ATCATAACTCCCATCCTGCGATGTCATCATATGGAACATGGCCAGTCCAGAGTC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000175680.3 ENSMUST00000180463.3 ENSMUST00000181512.8 |
||
| 3UTR-3UTR CCA 90 bp | AGTGGATGGAGATGTAGACATTGGTCCCACCCTATCATAGTCCAGCATTCAAGGGTGTCTGTGTCAGGCTaGGAAGTGGAGACCTTTTTG | + |
|
Preference number: 2 (lower is better) Translates to: SGWRCRHWSHPIIVQHSRVSVSG*EVETFL Trigger: CAAAAAGGTCTCCACTTCCCAGCCTGACACAGACAC...CCTTGAATGCTGGACTATGATAGGGTGGGACCAATGTCTACATCTCCATCCACT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000175680.3 ENSMUST00000180463.3 ENSMUST00000181512.8 |
||
| 3UTR-3UTR TCA 90 bp | TTTTATTTGGACTATAAGGTTCACATGCACTGGGTGCTGGGGACACTCTTTGCTTCCCGGAAATTGGGATaGGTATGTGGGCCTTGTGTC | + |
|
Preference number: 2 (lower is better) Translates to: FYLDYKVHMHWVLGTLFASRKLG*VCGPCV Trigger: GACACAAGGCCCACATACTCATCCCAATTTCCGGGA...AGCAAAGAGTGTCCCCAGCACCCAGTGCATGTGAACCTTATAGTCCAAATAAAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000175680.3 ENSMUST00000180463.3 ENSMUST00000181512.8 |
||
| 3UTR-3UTR TCA 90 bp | GACTACAACTTTGAACCTCTATCCAAAGTTTGGCAACTGAGTGAACTTCTCAGTGTGGGTCCCCTGCAGTaGATGTCATCTGGTCACCAG | + |
|
Preference number: 2 (lower is better) Translates to: DYNFEPLSKVWQLSELLSVGPLQ*MSSGHQ Trigger: CTGGTGACCAGATGACATTCACTGCAGGGGACCCAC...ACTGAGAAGTTCACTCAGTTGCCAAACTTTGGATAGAGGTTCAAAGTTGTAGTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000180463.3 |
||
| 3UTR-3UTR TCA 90 bp | TTGCATTTTATTTGGACTATAAGGTTCACATGCACTGGGTGCTGGGGACACTCTGCAGGATGGGAGTTATaGTCATCCTGCCTACCCCTA | + |
|
Preference number: 2 (lower is better) Translates to: LHFIWTIRFTCTGCWGHSAGWEL*SSCLPL Trigger: TAGGGGTAGGCAGGATGATCATAACTCCCATCCTGC...AGAGTGTCCCCAGCACCCAGTGCATGTGAACCTTATAGTCCAAATAAAATGCAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000175680.3 ENSMUST00000180463.3 ENSMUST00000181512.8 |
||
| 3UTR-3UTR GCA 90 bp | AGTGGATGGAGATGTAGACATTGGTCCCACCCTATCATAGTCCAGCATTCAAGGAAGTGGAGACCTTTTTaGGGAGAAACAGGGCTCAAG | + |
|
Preference number: 2 (lower is better) Translates to: SGWRCRHWSHPIIVQHSRKWRPF*GETGLK Trigger: CTTGAGCCCTGTTTCTCCGCAAAAAGGTCTCCACTT...CCTTGAATGCTGGACTATGATAGGGTGGGACCAATGTCTACATCTCCATCCACT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000175680.3 ENSMUST00000180463.3 ENSMUST00000181512.8 |
||
| 3UTR-3UTR CCA 90 bp | CACCCTATCATAGTCCAGCATTCAAGGACTCAGAGGCAAGAACAATGCCACATCGCAGTGAATGTCATCTaGTCACCAGTAAAGGTGCCA | + |
|
Preference number: 2 (lower is better) Translates to: HPIIVQHSRTQRQEQCHIAVNVI*SPVKVP Trigger: TGGCACCTTTACTGGTGACCAGATGACATTCACTGC...GATGTGGCATTGTTCTTGCCTCTGAGTCCTTGAATGCTGGACTATGATAGGGTG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000175680.3 ENSMUST00000180463.3 ENSMUST00000181512.8 |
||
| 3UTR-3UTR CCA 90 bp | TTGCATTTTATTTGGACTATAAGGTTCACATGCACTGGGTGCTGGGGACACTCTGTGTCTGTGTCAGGCTaGGAAGTGGAGACCTTTTTG | + |
|
Preference number: 2 (lower is better) Translates to: LHFIWTIRFTCTGCWGHSVSVSG*EVETFL Trigger: CAAAAAGGTCTCCACTTCCCAGCCTGACACAGACAC...AGAGTGTCCCCAGCACCCAGTGCATGTGAACCTTATAGTCCAAATAAAATGCAA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000175680.3 ENSMUST00000180463.3 ENSMUST00000181512.8 |
||
| 3UTR-3UTR CCA 90 bp | TTGCATTTTATTTGGACTATAAGGTTCACATGCACTGGGTGCTGGGGACACTCTTACCCCAGATTGAGGTaGGGGACATCCACTCATAGA | + |
|
Preference number: 2 (lower is better) Translates to: LHFIWTIRFTCTGCWGHSYPRLR*GTSTHR Trigger: TCTATGAGTGGATGTCCCCCACCTCAATCTGGGGTA...AGAGTGTCCCCAGCACCCAGTGCATGTGAACCTTATAGTCCAAATAAAATGCAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 3 transcripts: ENSMUST00000175680.3 ENSMUST00000180463.3 ENSMUST00000181512.8 |
||
| 3UTR-3UTR CCA 90 bp | AAACCCATTGAATCAAAGCAAACCCCCATCACAACACAGGTCACTTTGTGTGGATACCCCAGATTGAGGTaGGGGACATCCACTCATAGA | + |
|
Preference number: 2 (lower is better) Translates to: KPIESKQTPITTQVTLCGYPRLR*GTSTHR Trigger: TCTATGAGTGGATGTCCCCCACCTCAATCTGGGGTA...TCCACACAAAGTGACCTGTGTTGTGATGGGGGTTTGCTTTGATTCAATGGGTTT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000180463.3 |
||
| 3UTR-3UTR GCA 90 bp | AAACCCATTGAATCAAAGCAAACCCCCATCACAACACAGGTCACTTTGTGTGGAAAGTGGAGACCTTTTTaGGGAGAAACAGGGCTCAAG | + |
|
Preference number: 2 (lower is better) Translates to: KPIESKQTPITTQVTLCGKWRPF*GETGLK Trigger: CTTGAGCCCTGTTTCTCCGCAAAAAGGTCTCCACTT...TCCACACAAAGTGACCTGTGTTGTGATGGGGGTTTGCTTTGATTCAATGGGTTT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000180463.3 |
||
| 3UTR-3UTR CCA 90 bp | TTGCATTTTATTTGGACTATAAGGTTCACATGCACTGGGTGCTGGGGACACTCTATTGGGATGAGTATGTaGGCCTTGTGTCTGTGTCAG | + |
|
Preference number: 2 (lower is better) Translates to: LHFIWTIRFTCTGCWGHSIGMSM*ALCLCQ Trigger: CTGACACAGACACAAGGCCCACATACTCATCCCAAT...AGAGTGTCCCCAGCACCCAGTGCATGTGAACCTTATAGTCCAAATAAAATGCAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000175680.3 ENSMUST00000180463.3 ENSMUST00000181512.8 |
||
| 3UTR CAA 90 bp | TTCCCATTTGTTCTTGGTGTCACATTCAAAGCACCCACAAACCCATaGAATCAAAGCAAACCCCCATCACAACACAGGTCACTTTGTGTG | + |
|
Preference number: 2 (lower is better) Translates to: FPFVLGVTFKAPTNP*NQSKPPSQHRSLCV Trigger: CACACAAAGTGACCTGTGTTGTGATGGGGGTTTGCTTTGATTCAATGGGTTTGTGGGTGCTTTGAATGTGACACCAAGAACAAATGGGAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000180463.3 |
||
| 3UTR-3UTR GCA 90 bp | AAACCCATTGAATCAAAGCAAACCCCCATCACAACACAGGTCACTTTGTGTGGACAAAAAGAATATCTGTaGAGTAGACTCAGCACTCAA | + |
|
Preference number: 2 (lower is better) Translates to: KPIESKQTPITTQVTLCGQKEYL*SRLSTQ Trigger: TTGAGTGCTGAGTCTACTGCACAGATATTCTTTTTG...TCCACACAAAGTGACCTGTGTTGTGATGGGGGTTTGCTTTGATTCAATGGGTTT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000180463.3 |
||
| 3UTR CCA 72 bp | CCTGAACTCCGGCATGCTCCAGGTGCGCGGCGGGGGTaGCGCATCGCGCTCCACATCCTCCGAGATGGTTCG | + |
|
Preference number: 3 (lower is better) Translates to: PELRHAPGARRG*RIALHILRDGS Trigger: CGAACCATCTCGGAGGATGTGGAGCGCGATGCGCCACCCCCGCCGCGCACCTGGAGCATGCCGGAGTTCAGG 69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000175680.3 ENSMUST00000181512.8 |
||
| 3UTR CCA 72 bp | CTCCTGAGGGTGATTGCCCTGGGTGGTCAGTCGGCCTaGGGCGCCCTGAACTCCGGCATGCTCCAGGTGCGC | + |
|
Preference number: 3 (lower is better) Translates to: LLRVIALGGQSA*GALNSGMLQVR Trigger: GCGCACCTGGAGCATGCCGGAGTTCAGGGCGCCCCAGGCCGACTGACCACCCAGGGCAATCACCCTCAGGAG 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000175680.3 ENSMUST00000181512.8 |
||
| 3UTR TCA 72 bp | TGTCACTGGCAAAGGGTGCGATGCGAGCGCGGGTCTTaGAGGACGACAGGCTGCCGCGGGGCCTCAAGCTCC | + |
|
Preference number: 3 (lower is better) Translates to: CHWQRVRCERGS*RTTGCRGASSS Trigger: GGAGCTTGAGGCCCCGCGGCAGCCTGTCGTCCTTCAAGACCCGCGCTCGCATCGCACCCTTTGCCAGTGACA 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000175680.3 ENSMUST00000181512.8 |
||
| 3UTR CCA 72 bp | CAGCCCGTTATTCCTCCTGAGGGTGATTGCCCTGGGTaGTCAGTCGGCCTGGGGCGCCCTGAACTCCGGCAT | + |
|
Preference number: 3 (lower is better) Translates to: QPVIPPEGDCPG*SVGLGRPELRH Trigger: ATGCCGGAGTTCAGGGCGCCCCAGGCCGACTGACCACCCAGGGCAATCACCCTCAGGAGGAATAACGGGCTG 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000175680.3 ENSMUST00000181512.8 |
||
| 3UTR CCA 72 bp | GCAGTGTTGCTTGATGGGTCTCCTGGTTGGGGTAGGTaGGGAGGTTCCGGCGCTAGTGACAGAGTCACCAGC | + |
|
Preference number: 3 (lower is better) Translates to: AVLLDGSPGWGR*GGSGASDRVTS Trigger: GCTGGTGACTCTGTCACTAGCGCCGGAACCTCCCCACCTACCCCAACCAGGAGACCCATCAAGCAACACTGC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000175680.3 ENSMUST00000180463.3 ENSMUST00000181512.8 |
||
| 3UTR GCA 72 bp | ATCCTCCGAGATGGTTCGGATGTCACTGGCAAAGGGTaGGATGCGAGCGCGGGTCTTGAAGGACGACAGGCT | + |
|
Preference number: 3 (lower is better) Translates to: ILRDGSDVTGKG*DASAGLEGRQA Trigger: AGCCTGTCGTCCTTCAAGACCCGCGCTCGCATCGCACCCTTTGCCAGTGACATCCGAACCATCTCGGAGGAT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000175680.3 ENSMUST00000181512.8 |
||
| 3UTR GCA 72 bp | CCCCATCACAACACAGGTCACTTTGTGTGGAGGCTCTaGCCTGACCTGCAGAGAGGGGTTGCCGCATCAGCT | + |
|
Preference number: 3 (lower is better) Translates to: PHHNTGHFVWRL*PDLQRGVAASA Trigger: AGCTGATGCGGCAACCCCTCTCTGCAGGTCAGGGCAGAGCCTCCACACAAAGTGACCTGTGTTGTGATGGGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000180463.3 |
||
| 3UTR CCA 72 bp | CGTGGTCTAGCAGTGTTGCTTGATGGGTCTCCTGGTTaGGGTAGGTGGGGAGGTTCCGGCGCTAGTGACAGA | + |
|
Preference number: 3 (lower is better) Translates to: RGLAVLLDGSPG*GRWGGSGASDR Trigger: TCTGTCACTAGCGCCGGAACCTCCCCACCTACCCCAACCAGGAGACCCATCAAGCAACACTGCTAGACCACG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000175680.3 ENSMUST00000180463.3 ENSMUST00000181512.8 |
||
| 3UTR GCA 72 bp | ACACAGGTCACTTTGTGTGGAGGCTCTGCCCTGACCTaGAGAGAGGGGTTGCCGCATCAGCTGTTTTTGCCT | + |
|
Preference number: 3 (lower is better) Translates to: TQVTLCGGSALT*REGLPHQLFLP Trigger: AGGCAAAAACAGCTGATGCGGCAACCCCTCTCTGCAGGTCAGGGCAGAGCCTCCACACAAAGTGACCTGTGT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000180463.3 |
||
| 3UTR GCA 72 bp | CCCACAAGGGCCTCAGGCAGGAGGCTTGGCAAGCTCTaGTTCACTCAACATTTCCTCCCAACTGTGGAACTG | + |
|
Preference number: 3 (lower is better) Translates to: PTRASGRRLGKL*FTQHFLPTVEL Trigger: CAGTTCCACAGTTGGGAGGAAATGTTGAGTGAAGCAGAGCTTGCCAAGCCTCCTGCCTGAGGCCCTTGTGGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000180463.3 |
||
| 3UTR-3UTR CAA 90 bp | ATGAGCCAGTCAGCTCCTTCATCCTGGCAGCGATGGGTAAGAGGAATGTGCCATCTACCCTGGACTGCTTaGCTCAGGTACTTCCTAGGG | + |
|
Preference number: 3 (lower is better) Translates to: MSQSAPSSWQRWVRGMCHLPWTA*LRYFLG Trigger: CCCTAGGAAGTACCTGAGCAAAGCAGTCCAGGGTAG...ATGGCACATTCCTCTTACCCATCGCTGCCAGGATGAAGGAGCTGACTGGCTCAT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000180463.3 |
||
| 3UTR TCA 72 bp | TGGAGACCTTTTTGCGGAGAAACAGGGCTCAAGTCCTaGCTCTGCCCAGGTATCCAAGCAGGTGTGCTCACT | + |
|
Preference number: 3 (lower is better) Translates to: WRPFCGETGLKS*LCPGIQAGVLT Trigger: AGTGAGCACACCTGCTTGGATACCTGGGCAGAGTCAGGACTTGAGCCCTGTTTCTCCGCAAAAAGGTCTCCA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000175680.3 ENSMUST00000180463.3 ENSMUST00000181512.8 |
||
| 3UTR TCA 72 bp | GCTCAGGTACTTCCTAGGGAAGCTGGAGAGCAGGTGTaGACAGAAGGATCCCTAGACTTCAGCAGCAGGTTC | + |
|
Preference number: 3 (lower is better) Translates to: AQVLPREAGEQV*TEGSLDFSSRF Trigger: GAACCTGCTGCTGAAGTCTAGGGATCCTTCTGTTCACACCTGCTCTCCAGCTTCCCTAGGAAGTACCTGAGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000175680.3 ENSMUST00000180463.3 ENSMUST00000181512.8 |
||
| 3UTR GCA 72 bp | GTTCACATGCACTGGGTGCTGGGGACACTCTTTGCTTaGCCTGAACCTTACTTCTACCCCAGATTGAGGTGG | + |
|
Preference number: 3 (lower is better) Translates to: VHMHWVLGTLFA*PEPYFYPRLRW Trigger: CCACCTCAATCTGGGGTAGAAGTAAGGTTCAGGGCAAGCAAAGAGTGTCCCCAGCACCCAGTGCATGTGAAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000175680.3 ENSMUST00000180463.3 ENSMUST00000181512.8 |
||
| 3UTR CCA 72 bp | AGTATGTGGGCCTTGTGTCTGTGTCAGGCTGGGAAGTaGAGACCTTTTTGCGGAGAAACAGGGCTCAAGTCC | + |
|
Preference number: 3 (lower is better) Translates to: SMWALCLCQAGK*RPFCGETGLKS Trigger: GGACTTGAGCCCTGTTTCTCCGCAAAAAGGTCTCCACTTCCCAGCCTGACACAGACACAAGGCCCACATACT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000175680.3 ENSMUST00000180463.3 ENSMUST00000181512.8 |
||
| 3UTR CCA 72 bp | TGGGATGAGTATGTGGGCCTTGTGTCTGTGTCAGGCTaGGAAGTGGAGACCTTTTTGCGGAGAAACAGGGCT | + |
|
Preference number: 3 (lower is better) Translates to: WDEYVGLVSVSG*EVETFLRRNRA Trigger: AGCCCTGTTTCTCCGCAAAAAGGTCTCCACTTCCCAGCCTGACACAGACACAAGGCCCACATACTCATCCCA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000175680.3 ENSMUST00000180463.3 ENSMUST00000181512.8 |
||
| 3UTR GCA 72 bp | GAGGTTGGCAGGGACAGCAGTAGCAGCTGCCTGTCATaGAAGAGCAAGCTCACTACCTCAGGTTTTCCTTTT | + |
|
Preference number: 3 (lower is better) Translates to: EVGRDSSSSCLS*KSKLTTSGFPF Trigger: AAAAGGAAAACCTGAGGTAGTGAGCTTGCTCTTGCATGACAGGCAGCTGCTACTGCTGTCCCTGCCAACCTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000180463.3 |
||
| 3UTR CCA 72 bp | GCTTGCCCTGAACCTTACTTCTACCCCAGATTGAGGTaGGGGACATCCACTCATAGACCATCAGAGCATGAG | + |
|
Preference number: 3 (lower is better) Translates to: ACPEPYFYPRLR*GTSTHRPSEHE Trigger: CTCATGCTCTGATGGTCTATGAGTGGATGTCCCCCACCTCAATCTGGGGTAGAAGTAAGGTTCAGGGCAAGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000175680.3 ENSMUST00000180463.3 ENSMUST00000181512.8 |
||
| 3UTR TCA 72 bp | CCTGGAAGAAGAAATCAGCAATCAGTAGTCCTCCCCTaGGGATCCTCGGAACCTCCCTCTAGGCAAATCAAG | + |
|
Preference number: 3 (lower is better) Translates to: PGRRNQQSVVLP*GSSEPPSRQIK Trigger: CTTGATTTGCCTAGAGGGAGGTTCCGAGGATCCTCAGGGGAGGACTACTGATTGCTGATTTCTTCTTCCAGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000180463.3 |
||
| 3UTR-3UTR CAA 90 bp | CAAGACAGGGTTTCTTTGCGTAGCCCTGGCTATCTTGGAACTCATGCTGTAGACGCACCCACAAACCCATaGAATCAAAGCAAACCCCCA | + |
|
Preference number: 3 (lower is better) Translates to: QDRVSLRSPGYLGTHAVDAPTNP*NQSKPP Trigger: TGGGGGTTTGCTTTGATTCAATGGGTTTGTGGGTGC...GTCTACAGCATGAGTTCCAAGATAGCCAGGGCTACGCAAAGAAACCCTGTCTTG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000180463.3 |
||
| 3UTR TCA 72 bp | GCAGTGAATGTCATCTGGTCACCAGTAAAGGTGCCATaGATGGATAGGGTGAATGGGGCATCCCGGAAATTG | + |
|
Preference number: 3 (lower is better) Translates to: AVNVIWSPVKVP*MDRVNGASRKL Trigger: CAATTTCCGGGATGCCCCATTCACCCTATCCATTCATGGCACCTTTACTGGTGACCAGATGACATTCACTGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000175680.3 ENSMUST00000180463.3 ENSMUST00000181512.8 |
||
| 3UTR CCA 72 bp | GAGATTATACTAATGAGCCAGTCAGCTCCTTCATCCTaGCAGCGATGGGTAAGAGGAATGTGCCATCCGATC | + |
|
Preference number: 3 (lower is better) Translates to: EIILMSQSAPSS*QRWVRGMCHPI Trigger: GATCGGATGGCACATTCCTCTTACCCATCGCTGCCAGGATGAAGGAGCTGACTGGCTCATTAGTATAATCTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000180463.3 |
||
| 3UTR TCA 72 bp | CATGTTCCATATGATGACATCGCAGGATGGGAGTTATaGTCATCCTGCCTACCCCTAGCCACCTTTCTCAGA | + |
|
Preference number: 3 (lower is better) Translates to: HVPYDDIAGWEL*SSCLPLATFLR Trigger: TCTGAGAAAGGTGGCTAGGGGTAGGCAGGATGATCATAACTCCCATCCTGCGATGTCATCATATGGAACATG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000175680.3 ENSMUST00000180463.3 ENSMUST00000181512.8 |
||
| 3UTR GCA 72 bp | CTCCCATTGCATTTTATTTGGACTATAAGGTTCACATaGACTGGGTGCTGGGGACACTCTTTGCTTGCCCTG | + |
|
Preference number: 3 (lower is better) Translates to: LPLHFIWTIRFT*TGCWGHSLLAL Trigger: CAGGGCAAGCAAAGAGTGTCCCCAGCACCCAGTGCATGTGAACCTTATAGTCCAAATAAAATGCAATGGGAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000175680.3 ENSMUST00000180463.3 ENSMUST00000181512.8 |
||
| 3UTR GCA 72 bp | GCAACCCAAAGCCACATCATTCAAAAAGAATATCTGTaGAGTAGACTCAGCACTCAAGAGGCTGAAGCAGCC | + |
|
Preference number: 3 (lower is better) Translates to: ATQSHIIQKEYL*SRLSTQEAEAA Trigger: GGCTGCTTCAGCCTCTTGAGTGCTGAGTCTACTGCACAGATATTCTTTTTGAATGATGTGGCTTTGGGTTGC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000180463.3 |
||
| 3UTR TCA 72 bp | TTCTTGGTGTCACATTCAAAGCACCCACAAACCCATTaGATCAAAGCAAACCCCCATCACAACACAGGTCAC | + |
|
Preference number: 3 (lower is better) Translates to: FLVSHSKHPQTH*IKANPHHNTGH Trigger: GTGACCTGTGTTGTGATGGGGGTTTGCTTTGATTCAATGGGTTTGTGGGTGCTTTGAATGTGACACCAAGAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000180463.3 |
||
| 3UTR GCA 72 bp | ATAGTCCAGCATTCAAGGACTCAGAGGCAAGAACAATaGCACATCAGAGGGATCAGAGTTAAGGCAAAAGCA | + |
|
Preference number: 3 (lower is better) Translates to: IVQHSRTQRQEQ*HIRGIRVKAKA Trigger: TGCTTTTGCCTTAACTCTGATCCCTCTGATGTGGCATTGTTCTTGCCTCTGAGTCCTTGAATGCTGGACTAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000175680.3 ENSMUST00000180463.3 ENSMUST00000181512.8 |
||
| 3UTR CCA 72 bp | TTTATTTGGACTATAAGGTTCACATGCACTGGGTGCTaGGGACACTCTTTGCTTGCCCTGAACCTTACTTCT | + |
|
Preference number: 3 (lower is better) Translates to: FIWTIRFTCTGC*GHSLLALNLTS Trigger: AGAAGTAAGGTTCAGGGCAAGCAAAGAGTGTCCCCAGCACCCAGTGCATGTGAACCTTATAGTCCAAATAAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000175680.3 ENSMUST00000180463.3 ENSMUST00000181512.8 |
||
| 3UTR CCA 72 bp | ATTGCATTTTATTTGGACTATAAGGTTCACATGCACTaGGTGCTGGGGACACTCTTTGCTTGCCCTGAACCT | + |
|
Preference number: 3 (lower is better) Translates to: IAFYLDYKVHMH*VLGTLFACPEP Trigger: AGGTTCAGGGCAAGCAAAGAGTGTCCCCAGCACCCAGTGCATGTGAACCTTATAGTCCAAATAAAATGCAAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000175680.3 ENSMUST00000180463.3 ENSMUST00000181512.8 |
||
| 3UTR TCA 72 bp | AAGAGCAAGCTCACTACCTCAGGTTTTCCTTTTGTTTaGGGAGAACAGAGAGACCTGGAAGAAGAAATCAGC | + |
|
Preference number: 3 (lower is better) Translates to: KSKLTTSGFPFV*GEQRDLEEEIS Trigger: GCTGATTTCTTCTTCCAGGTCTCTCTGTTCTCCTCAAACAAAAGGAAAACCTGAGGTAGTGAGCTTGCTCTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000180463.3 |
||
| 3UTR TCA 72 bp | GAGGAATGTGCCATCCGATCATTATCCAGATCCCAGTaGAGCAACCCAAAGCCACATCATTCAAAAAGAATA | + |
|
Preference number: 3 (lower is better) Translates to: EECAIRSLSRSQ*SNPKPHHSKRI Trigger: TATTCTTTTTGAATGATGTGGCTTTGGGTTGCTTCACTGGGATCTGGATAATGATCGGATGGCACATTCCTC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000180463.3 |
||
| 3UTR CCA 72 bp | CTCACTCTCAGAAACAAAATGCAAGGAGTCATATGTTaGGAAGAATTTGGGTCATTTCAGCAGGGACTAGGT | + |
|
Preference number: 3 (lower is better) Translates to: LTLRNKMQGVIC*EEFGSFQQGLG Trigger: ACCTAGTCCCTGCTGAAATGACCCAAATTCTTCCCAACATATGACTCCTTGCATTTTGTTTCTGAGAGTGAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000180463.3 |
||
| 3UTR CCA 72 bp | GGAACTGTTTGTTTCAAAGCCTTTCCCATTTGTTCTTaGTGTCACATTCAAAGCACCCACAAACCCATTGAA | + |
|
Preference number: 3 (lower is better) Translates to: GTVCFKAFPICS*CHIQSTHKPIE Trigger: TTCAATGGGTTTGTGGGTGCTTTGAATGTGACACCAAGAACAAATGGGAAAGGCTTTGAAACAAACAGTTCC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000180463.3 |
||
| CDS-3UTR GCA 90 bp | GGGCGCCCTGAACTCCGGCATGCTCCAGGTGCGCGGCGGGGGTGGCGCATCGCGTTCTCCAGGGCCTCCTaGAACACGGAGCGGAACAGC | + |
|
Preference number: 4 (lower is better) Translates to: GRPELRHAPGARRGWRIAFSRAS*NTERNS Trigger: GCTGTTCCGCTCCGTGTTGCAGGAGGCCCTGGAGAA...CGCGATGCGCCACCCCCGCCGCGCACCTGGAGCATGCCGGAGTTCAGGGCGCCC 71% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000175680.3 ENSMUST00000181512.8 |
||
| 3UTR CAA 72 bp | ATGTCACTGGCAAAGGGTGCGATGCGAGCGCGGGTCTaGAAGGACGACAGGCTGCCGCGGGGCCTCAAGCTC | + |
|
Preference number: 4 (lower is better) Translates to: MSLAKGAMRARV*KDDRLPRGLKL Trigger: GAGCTTGAGGCCCCGCGGCAGCCTGTCGTCCTTCAAGACCCGCGCTCGCATCGCACCCTTTGCCAGTGACAT 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000175680.3 ENSMUST00000181512.8 |
||
| CDS-3UTR TCA 90 bp | ATGCGAGCGCGGGTCTTGAAGGACGACAGGCTGCCGCGGGGCCTCAAGCTCCACCAGCCAGCTCCATCATaGGCGTCTCCAGCACCATCT | + |
|
Preference number: 4 (lower is better) Translates to: MRARVLKDDRLPRGLKLHQPAPS*ASPAPS Trigger: AGATGGTGCTGGAGACGCTCATGATGGAGCTGGCTG...GTGGAGCTTGAGGCCCCGCGGCAGCCTGTCGTCCTTCAAGACCCGCGCTCGCAT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000175680.3 ENSMUST00000181512.8 |
||
| CDS-3UTR GCA 90 bp | AGCCTCGGCCCCAGTGGATGGAGATGTAGACATTGGTCCCACCCTATCATAGTCCCGGCATGCTCCAGGTaGGCGGCGGGGGTGGCGCAT | + |
|
Preference number: 4 (lower is better) Translates to: SLGPSGWRCRHWSHPIIVPACSR*AAGVAH Trigger: ATGCGCCACCCCCGCCGCGCACCTGGAGCATGCCGG...GACTATGATAGGGTGGGACCAATGTCTACATCTCCATCCACTGGGGCCGAGGCT 63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000180463.3 |
||
| CDS-3UTR CCA 90 bp | CTCCTGGTTGGGGTAGGTGGGGAGGTTCCGGCGCTAGTGACAGAGTCACCAGCCTGGTTCGGATGTCACTaGCAAAGGGTGCGATGCGAG | + |
|
Preference number: 4 (lower is better) Translates to: LLVGVGGEVPALVTESPAWFGCH*QRVRCE Trigger: CTCGCATCGCACCCTTTGCCAGTGACATCCGAACCA...GGCTGGTGACTCTGTCACTAGCGCCGGAACCTCCCCACCTACCCCAACCAGGAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000180463.3 |
||
| CDS-3UTR TCA 90 bp | CAGGTTCGCAGGCCTCCAAGCCCTGACTCTGGACTGGCCATGTTCCATATGATGCAGCCAGCTCCATCATaGGCGTCTCCAGCACCATCT | + |
|
Preference number: 4 (lower is better) Translates to: QVRRPPSPDSGLAMFHMMQPAPS*ASPAPS Trigger: AGATGGTGCTGGAGACGCTCATGATGGAGCTGGCTG...CATCATATGGAACATGGCCAGTCCAGAGTCAGGGCTTGGAGGCCTGCGAACCTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000175680.3 ENSMUST00000180463.3 ENSMUST00000181512.8 |
||
| 3UTR CAA 72 bp | TGCTCACTGGGTAGTTGGCTCCGTGGTCTAGCAGTGTaGCTTGATGGGTCTCCTGGTTGGGGTAGGTGGGGA | + |
|
Preference number: 4 (lower is better) Translates to: CSLGSWLRGLAV*LDGSPGWGRWG Trigger: TCCCCACCTACCCCAACCAGGAGACCCATCAAGCAACACTGCTAGACCACGGAGCCAACTACCCAGTGAGCA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000175680.3 ENSMUST00000180463.3 ENSMUST00000181512.8 |
||
| 3UTR CAA 72 bp | TTGTGTGGAGGCTCTGCCCTGACCTGCAGAGAGGGGTaGCCGCATCAGCTGTTTTTGCCTTCGCAGGTGGAA | + |
|
Preference number: 4 (lower is better) Translates to: LCGGSALTCREG*PHQLFLPSQVE Trigger: TTCCACCTGCGAAGGCAAAAACAGCTGATGCGGCAACCCCTCTCTGCAGGTCAGGGCAGAGCCTCCACACAA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000180463.3 |
||
| CDS-3UTR TCA 90 bp | AGCCTCGGCCCCAGTGGATGGAGATGTAGACATTGGTCCCACCCTATCATAGTCCAGCCAGCAGCTGCCTaGACCAGGGCTGATGTCATA | + |
|
Preference number: 4 (lower is better) Translates to: SLGPSGWRCRHWSHPIIVQPAAA*TRADVI Trigger: TATGACATCAGCCCTGGTTCAGGCAGCTGCTGGCTG...GACTATGATAGGGTGGGACCAATGTCTACATCTCCATCCACTGGGGCCGAGGCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000175680.3 ENSMUST00000181512.8 |
||
| 3UTR CAA 72 bp | CTTGTGTCTGTGTCAGGCTGGGAAGTGGAGACCTTTTaGCGGAGAAACAGGGCTCAAGTCCTGACTCTGCCC | + |
|
Preference number: 4 (lower is better) Translates to: LVSVSGWEVETF*RRNRAQVLTLP Trigger: GGGCAGAGTCAGGACTTGAGCCCTGTTTCTCCGCAAAAAGGTCTCCACTTCCCAGCCTGACACAGACACAAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000175680.3 ENSMUST00000180463.3 ENSMUST00000181512.8 |
||
| 3UTR CAA 72 bp | GAATCAAAGCAAACCCCCATCACAACACAGGTCACTTaGTGTGGAGGCTCTGCCCTGACCTGCAGAGAGGGG | + |
|
Preference number: 4 (lower is better) Translates to: ESKQTPITTQVT*CGGSALTCREG Trigger: CCCCTCTCTGCAGGTCAGGGCAGAGCCTCCACACAAAGTGACCTGTGTTGTGATGGGGGTTTGCTTTGATTC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000180463.3 |
||
| CDS-3UTR TCA 90 bp | CAACCCAAAGCCACATCATTCAAAAAGAATATCTGTGCAGTAGACTCAGCACTCTGCGAGCGCGGGTCTTaGAGGACGACAGGCTGCCGC | + |
|
Preference number: 4 (lower is better) Translates to: QPKATSFKKNICAVDSALCERGS*RTTGCR Trigger: GCGGCAGCCTGTCGTCCTTCAAGACCCGCGCTCGCA...GAGTGCTGAGTCTACTGCACAGATATTCTTTTTGAATGATGTGGCTTTGGGTTG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000180463.3 |
||
| CDS-3UTR TCA 90 bp | CACCCTATCATAGTCCAGCATTCAAGGACTCAGAGGCAAGAACAATGCCACATCCAGCCAGCTCCATCATaGGCGTCTCCAGCACCATCT | + |
|
Preference number: 4 (lower is better) Translates to: HPIIVQHSRTQRQEQCHIQPAPS*ASPAPS Trigger: AGATGGTGCTGGAGACGCTCATGATGGAGCTGGCTG...GATGTGGCATTGTTCTTGCCTCTGAGTCCTTGAATGCTGGACTATGATAGGGTG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000175680.3 ENSMUST00000180463.3 ENSMUST00000181512.8 |
||
| CDS-3UTR GCA 90 bp | AGACATTGGTCCCACCCTATCATAGTCCAGCATTCAAGGACTCAGAGGCAAGAACGTTCAGCCAGCAGCTaGCTGAACCTGAGGATGGCA | + |
|
Preference number: 4 (lower is better) Translates to: RHWSHPIIVQHSRTQRQERSASS*LNLRMA Trigger: TGCCATCCTCAGGTTCAGGCAGCTGCTGGCTGAACG...TTCTTGCCTCTGAGTCCTTGAATGCTGGACTATGATAGGGTGGGACCAATGTCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000180463.3 |
||
| CDS-3UTR GCA 90 bp | TTGCATTTTATTTGGACTATAAGGTTCACATGCACTGGGTGCTGGGGACACTCTTTCTCCAGGGCCTCCTaGAACACGGAGCGGAACAGC | + |
|
Preference number: 4 (lower is better) Translates to: LHFIWTIRFTCTGCWGHSFSRAS*NTERNS Trigger: GCTGTTCCGCTCCGTGTTGCAGGAGGCCCTGGAGAA...AGAGTGTCCCCAGCACCCAGTGCATGTGAACCTTATAGTCCAAATAAAATGCAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000175680.3 ENSMUST00000180463.3 ENSMUST00000181512.8 |
||
| CDS-3UTR GCA 90 bp | CAAAAAGAATATCTGTGCAGTAGACTCAGCACTCAAGAGGCTGAAGCAGCCAAAGTCACTGGCAAAGGGTaGGATGCGAGCGCGGGTCTT | + |
|
Preference number: 4 (lower is better) Translates to: QKEYLCSRLSTQEAEAAKVTGKG*DASAGL Trigger: AAGACCCGCGCTCGCATCGCACCCTTTGCCAGTGAC...TTTGGCTGCTTCAGCCTCTTGAGTGCTGAGTCTACTGCACAGATATTCTTTTTG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000180463.3 |
||
| CDS-3UTR GCA 90 bp | ATTATCCAGATCCCAGTGAAGCAACCCAAAGCCACATCATTCAAAAAGAATATCTGGGCCTCCTCCTCCTaGTTCATCTTCTCCAGGGCC | + |
|
Preference number: 4 (lower is better) Translates to: IIQIPVKQPKATSFKKNIWASSS*FIFSRA Trigger: GGCCCTGGAGAAGATGAAGCAGGAGGAGGAGGCCCA...GATATTCTTTTTGAATGATGTGGCTTTGGGTTGCTTCACTGGGATCTGGATAAT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000180463.3 |
||
| 3UTR CAA 72 bp | GTTCTTGGTGTCACATTCAAAGCACCCACAAACCCATaGAATCAAAGCAAACCCCCATCACAACACAGGTCA | + |
|
Preference number: 4 (lower is better) Translates to: VLGVTFKAPTNP*NQSKPPSQHRS Trigger: TGACCTGTGTTGTGATGGGGGTTTGCTTTGATTCAATGGGTTTGTGGGTGCTTTGAATGTGACACCAAGAAC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000180463.3 |
||
| 3UTR CAA 72 bp | AACAGCTGTGTGTTTGTGTTTCAAGACAGGGTTTCTTaGCGTAGCCCTGGCTATCTTGGAACTCATGCTGTA | + |
|
Preference number: 4 (lower is better) Translates to: NSCVFVFQDRVS*RSPGYLGTHAV Trigger: TACAGCATGAGTTCCAAGATAGCCAGGGCTACGCAAAGAAACCCTGTCTTGAAACACAAACACACAGCTGTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000180463.3 |
||
| CDS-3UTR CCA 90 bp | CAACCCAAAGCCACATCATTCAAAAAGAATATCTGTGCAGTAGACTCAGCACTCAGGATGGGTGGATCTTaGCACATACATCCTCCAACT | + |
|
Preference number: 4 (lower is better) Translates to: QPKATSFKKNICAVDSALRMGGS*HIHPPT Trigger: AGTTGGAGGATGTATGTGCCAAGATCCACCCATCCT...GAGTGCTGAGTCTACTGCACAGATATTCTTTTTGAATGATGTGGCTTTGGGTTG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000180463.3 |
||
| 3UTR CAA 72 bp | GCAGTACCTAGTGATTTTTCTCCCATTGCATTTTATTaGGACTATAAGGTTCACATGCACTGGGTGCTGGGG | + |
|
Preference number: 4 (lower is better) Translates to: AVPSDFSPIAFY*DYKVHMHWVLG Trigger: CCCCAGCACCCAGTGCATGTGAACCTTATAGTCCAAATAAAATGCAATGGGAGAAAAATCACTAGGTACTGC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000180463.3 |
||
| 3UTR CAA 72 bp | CATGCAAGAGCAAGCTCACTACCTCAGGTTTTCCTTTaGTTTGAGGAGAACAGAGAGACCTGGAAGAAGAAA | + |
|
Preference number: 4 (lower is better) Translates to: HARASSLPQVFL*FEENRETWKKK Trigger: TTTCTTCTTCCAGGTCTCTCTGTTCTCCTCAAACAAAAGGAAAACCTGAGGTAGTGAGCTTGCTCTTGCATG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000180463.3 |
||
| 3UTR CAA 72 bp | CCTCACTCTCAGAAACAAAATGCAAGGAGTCATATGTaGGGAAGAATTTGGGTCATTTCAGCAGGGACTAGG | + |
|
Preference number: 4 (lower is better) Translates to: PHSQKQNARSHM*GRIWVISAGTR Trigger: CCTAGTCCCTGCTGAAATGACCCAAATTCTTCCCAACATATGACTCCTTGCATTTTGTTTCTGAGAGTGAGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000180463.3 |
||
| 3UTR CAA 72 bp | CAACTGTGGAACTGTTTGTTTCAAAGCCTTTCCCATTaGTTCTTGGTGTCACATTCAAAGCACCCACAAACC | + |
|
Preference number: 4 (lower is better) Translates to: QLWNCLFQSLSH*FLVSHSKHPQT Trigger: GGTTTGTGGGTGCTTTGAATGTGACACCAAGAACAAATGGGAAAGGCTTTGAAACAAACAGTTCCACAGTTG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000180463.3 |
||
| 3UTR CAA 72 bp | ACAGATAGATATCCCCAACTTCTGGGATGTTCTCTTTaGCAGAGCACACTGAAGTATTCAGGCATGAAGAAA | + |
|
Preference number: 4 (lower is better) Translates to: TDRYPQLLGCSL*QSTLKYSGMKK Trigger: TTTCTTCATGCCTGAATACTTCAGTGTGCTCTGCAAAAGAGAACATCCCAGAAGTTGGGGATATCTATCTGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000180463.3 |
||
| CDS TCA 90 bp | TCTGTTGTCGCTCCACCTCTCTCATCTGCCCAGCCAGCTCCATCATaGGCGTCTCCAGCACCATCTCGGCCGGGGTCCGGGCCGAGAGCC | + |
|
Preference number: 5 (lower is better) Translates to: SVVAPPLSSAQPAPS*ASPAPSRPGSGPRA Trigger: GGCTCTCGGCCCGGACCCCGGCCGAGATGGTGCTGGAGACGCTCATGATGGAGCTGGCTGGGCAGATGAGAGAGGTGGAGCGACAACAGA 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000175680.3 ENSMUST00000180463.3 ENSMUST00000181512.8 |
||
| CDS GCA 90 bp | CAGCCGCTCACCAGGGCTGATGTCATAGGTGGGCCTGGGCGTGTTTaGCAACCAGCTGTAGTCCACACCAGTGCAGATCTTCCTGACTGC | + |
|
Preference number: 5 (lower is better) Translates to: QPLTRADVIGGPGRV*QPAVVHTSADLPDC Trigger: GCAGTCAGGAAGATCTGCACTGGTGTGGACTACAGCTGGTTGGCAAACACGCCCAGGCCCACCTATGACATCAGCCCTGGTGAGCGGCTG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000180463.3 |
||
| CDS CCA 90 bp | AGCCAGCAGCTGCCTGAACCTGAGGATGGCAGGCCCACAGTAGGATaGGTGGATCTTGGCACATACATCCTCCAACTGCAGCCGCTCACC | + |
|
Preference number: 5 (lower is better) Translates to: SQQLPEPEDGRPTVG*VDLGTYILQLQPLT Trigger: GGTGAGCGGCTGCAGTTGGAGGATGTATGTGCCAAGATCCACCCATCCTACTGTGGGCCTGCCATCCTCAGGTTCAGGCAGCTGCTGGCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000180463.3 |
||
| CDS TCA 90 bp | GCGTGTTTGCCAACCAGCTGTAGTCCACACCAGTGCAGATCTTCCTaGCTGCGCTGCGACGCTCCCTCTGTTGTCGCTCCACCTCTCTCA | + |
|
Preference number: 5 (lower is better) Translates to: ACLPTSCSPHQCRSS*LRCDAPSVVAPPLS Trigger: TGAGAGAGGTGGAGCGACAACAGAGGGAGCGTCGCAGCGCAGTCAGGAAGATCTGCACTGGTGTGGACTACAGCTGGTTGGCAAACACGC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000175680.3 ENSMUST00000180463.3 ENSMUST00000181512.8 |
||
| CDS TCA 90 bp | GGATCTTGGCACATACATCCTCCAACTGCAGCCGCTCACCAGGGCTaGTGTCATAGGTGGGCCTGGGCGTGTTTGCCAACCAGCTGTAGT | + |
|
Preference number: 5 (lower is better) Translates to: GSWHIHPPTAAAHQG*CHRWAWACLPTSCS Trigger: ACTACAGCTGGTTGGCAAACACGCCCAGGCCCACCTATGACATCAGCCCTGGTGAGCGGCTGCAGTTGGAGGATGTATGTGCCAAGATCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000180463.3 |
||
| CDS GCA 90 bp | GTTTGCCAACCAGCTGTAGTCCACACCAGTGCAGATCTTCCTGACTaGGCTGCGACGCTCCCTCTGTTGTCGCTCCACCTCTCTCATCTG | + |
|
Preference number: 5 (lower is better) Translates to: VCQPAVVHTSADLPD*AATLPLLSLHLSHL Trigger: CAGATGAGAGAGGTGGAGCGACAACAGAGGGAGCGTCGCAGCGCAGTCAGGAAGATCTGCACTGGTGTGGACTACAGCTGGTTGGCAAAC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000175680.3 ENSMUST00000180463.3 ENSMUST00000181512.8 |
||
| CDS-3UTR CAA 90 bp | GTGGGCCTTGTGTCTGTGTCAGGCTGGGAAGTGGAGACCTTTTTGCGGAGAAACTGGGCCTGGGCGTGTTaGCCAACCAGCTGTAGTCCA | + |
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Preference number: 5 (lower is better) Translates to: VGLVSVSGWEVETFLRRNWAWAC*PTSCSP Trigger: TGGACTACAGCTGGTTGGCAAACACGCCCAGGCCCA...GTTTCTCCGCAAAAAGGTCTCCACTTCCCAGCCTGACACAGACACAAGGCCCAC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000175680.3 ENSMUST00000180463.3 ENSMUST00000181512.8 |
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| CDS-3UTR CAA 90 bp | ATCCCGGAAATTGGGATGAGTATGTGGGCCTTGTGTCTGTGTCAGGCTGGGAAGTGGGCCTGGGCGTGTTaGCCAACCAGCTGTAGTCCA | + |
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Preference number: 5 (lower is better) Translates to: IPEIGMSMWALCLCQAGKWAWAC*PTSCSP Trigger: TGGACTACAGCTGGTTGGCAAACACGCCCAGGCCCA...CTTCCCAGCCTGACACAGACACAAGGCCCACATACTCATCCCAATTTCCGGGAT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000175680.3 ENSMUST00000180463.3 ENSMUST00000181512.8 |
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| CDS-3UTR CAA 90 bp | AGTGGATGGAGATGTAGACATTGGTCCCACCCTATCATAGTCCAGCATTCAAGGTGGGCCTGGGCGTGTTaGCCAACCAGCTGTAGTCCA | + |
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Preference number: 5 (lower is better) Translates to: SGWRCRHWSHPIIVQHSRWAWAC*PTSCSP Trigger: TGGACTACAGCTGGTTGGCAAACACGCCCAGGCCCA...CCTTGAATGCTGGACTATGATAGGGTGGGACCAATGTCTACATCTCCATCCACT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000175680.3 ENSMUST00000180463.3 ENSMUST00000181512.8 |
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| CDS TCA 72 bp | AAGGACGACAGGCTGCCGCGGGGCCTCAAGCTCCACTaGCGTGTCAGCTTATGGGCCTCCTCCTCCTGCTTC | + |
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Preference number: 6 (lower is better) Translates to: KDDRLPRGLKLH*RVSLWASSSCF Trigger: GAAGCAGGAGGAGGAGGCCCATAAGCTGACACGTCAGTGGAGCTTGAGGCCCCGCGGCAGCCTGTCGTCCTT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000180463.3 |
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| CDS GCA 72 bp | CCAGCTGTAGTCCACACCAGTGCAGATCTTCCTGACTaGGCTGCGACGCTCCCTCTGTTGTCGCTCCACCTC | + |
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Preference number: 6 (lower is better) Translates to: PAVVHTSADLPD*AATLPLLSLHL Trigger: GAGGTGGAGCGACAACAGAGGGAGCGTCGCAGCGCAGTCAGGAAGATCTGCACTGGTGTGGACTACAGCTGG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000175680.3 ENSMUST00000180463.3 ENSMUST00000181512.8 |
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| CDS CAA 90 bp | CACACCAGTGCAGATCTTCCTGACTGCGCTGCGACGCTCCCTCTGTaGTCGCTCCACCTCTCTCATCTGCCCAGCCAGCTCCATCATGAG | + |
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Preference number: 6 (lower is better) Translates to: HTSADLPDCAATLPL*SLHLSHLPSQLHHE Trigger: CTCATGATGGAGCTGGCTGGGCAGATGAGAGAGGTGGAGCGACAACAGAGGGAGCGTCGCAGCGCAGTCAGGAAGATCTGCACTGGTGTG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000175680.3 ENSMUST00000180463.3 ENSMUST00000181512.8 |
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| CDS TCA 72 bp | CCAACCAGCTGTAGTCCACACCAGTGCAGATCTTCCTaGCTGCGCTGCGACGCTCCCTCTGTTGTCGCTCCA | + |
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Preference number: 6 (lower is better) Translates to: PTSCSPHQCRSS*LRCDAPSVVAP Trigger: TGGAGCGACAACAGAGGGAGCGTCGCAGCGCAGTCAGGAAGATCTGCACTGGTGTGGACTACAGCTGGTTGG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000175680.3 ENSMUST00000180463.3 ENSMUST00000181512.8 |
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| CDS TCA 72 bp | CACATACATCCTCCAACTGCAGCCGCTCACCAGGGCTaGTGTCATAGGTGGGCCTGGGCGTGTTTGCCAACC | + |
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Preference number: 6 (lower is better) Translates to: HIHPPTAAAHQG*CHRWAWACLPT Trigger: GGTTGGCAAACACGCCCAGGCCCACCTATGACATCAGCCCTGGTGAGCGGCTGCAGTTGGAGGATGTATGTG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000180463.3 |
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