Pregenerated sensors for RCVRN (Mus musculus)
Ensembl gene IDs: ENSMUSG00000020907Ensembl transcript IDs: ENSMUST00000021290.2
Found 34 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
Type | Sensor | Details |
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3UTR GCA 90 bp | TCCCCACCTCTCCAGACTCAGGGTGTGCGTGCGCAGGCTGATGCTTaGAATGCTCACACTGCAGGTGTTTGTGTGGGGGTGAGGTGGGGG | + |
Preference number: 1 (lower is better) Translates to: SPPLQTQGVRAQADA*NAHTAGVCVGVRWG Trigger: CCCCCACCTCACCCCCACACAAACACCTGCAGTGTGAGCATTGCAAGCATCAGCCTGCGCACGCACACCCTGAGTCTGGAGAGGTGGGGA 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021290.2 |
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3UTR TCA 90 bp | ATTATCACAGGGCTACCTGGGCAGGAGAAGGAGACAGGTAAAGTGTaGAGGATGGGGAGGACACTGAAGACAAAAGGAAGCAGGAGTTGT | + |
Preference number: 1 (lower is better) Translates to: IITGLPGQEKETGKV*RMGRTLKTKGSRSC Trigger: ACAACTCCTGCTTCCTTTTGTCTTCAGTGTCCTCCCCATCCTTCACACTTTACCTGTCTCCTTCTCCTGCCCAGGTAGCCCTGTGATAAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021290.2 |
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3UTR TCA 90 bp | TGGAACCTGCTTACCCAGCAATCCCCAAAGGAGCTTAAGCAGGAATaGTATTTAGGACTCCTACGCCCTAAGCTTGGGATTATCACAGGG | + |
Preference number: 1 (lower is better) Translates to: WNLLTQQSPKELKQE*YLGLLRPKLGIITG Trigger: CCCTGTGATAATCCCAAGCTTAGGGCGTAGGAGTCCTAAATATCATTCCTGCTTAAGCTCCTTTGGGGATTGCTGGGTAAGCAGGTTCCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021290.2 |
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3UTR-3UTR GCA 90 bp | CTACGCCCTAAGCTTGGGATTATCACAGGGCTACCTGGGCAGGAGAAGGAGACATTGCAATGCTCACACTaGAGGTGTTTGTGTGGGGGT | + |
Preference number: 2 (lower is better) Translates to: LRPKLGIITGLPGQEKETLQCSH*RCLCGG Trigger: ACCCCCACACAAACACCTGCAGTGTGAGCATTGCAA...TGTCTCCTTCTCCTGCCCAGGTAGCCCTGTGATAATCCCAAGCTTAGGGCGTAG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021290.2 |
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3UTR TCA 72 bp | GGGCTACCTGGGCAGGAGAAGGAGACAGGTAAAGTGTaGAGGATGGGGAGGACACTGAAGACAAAAGGAAGC | + |
Preference number: 3 (lower is better) Translates to: GLPGQEKETGKV*RMGRTLKTKGS Trigger: GCTTCCTTTTGTCTTCAGTGTCCTCCCCATCCTTCACACTTTACCTGTCTCCTTCTCCTGCCCAGGTAGCCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021290.2 |
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3UTR-3UTR CAA 90 bp | GACTCCTACGCCCTAAGCTTGGGATTATCACAGGGCTACCTGGGCAGGAGAAGGAAAAGGAAGCAGGAGTaGTGTCCTGCTAAGGACCTT | + |
Preference number: 3 (lower is better) Translates to: DSYALSLGLSQGYLGRRRKRKQE*CPAKDL Trigger: AAGGTCCTTAGCAGGACACAACTCCTGCTTCCTTTT...CCTTCTCCTGCCCAGGTAGCCCTGTGATAATCCCAAGCTTAGGGCGTAGGAGTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021290.2 |
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CDS-3UTR CCA 90 bp | GACCTTCAGTTGGCAGGGAGAGGTTTGGTTCCCCACCTCTCCAGACTCAGGGTGGCTGCGCGTAGGCCTTaGGGTCGGAGTCCGGGAAAA | + |
Preference number: 4 (lower is better) Translates to: DLQLAGRGLVPHLSRLRVAARRP*GRSPGK Trigger: TTTTCCCGGACTCCGACCCCAAGGCCTACGCGCAGC...CACCCTGAGTCTGGAGAGGTGGGGAACCAAACCTCTCCCTGCCAACTGAAGGTC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021290.2 |
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CDS-3UTR GCA 90 bp | TGTGTCCTGCTAAGGACCTTCAGTTGGCAGGGAGAGGTTTGGTTCCCCACCTCTGCTTCTGCGTGGGCTTaGCCGCCGTGGTCATGTGCA | + |
Preference number: 4 (lower is better) Translates to: CVLLRTFSWQGEVWFPTSASAWA*PPWSCA Trigger: TGCACATGACCACGGCGGGCAAGCCCACGCAGAAGC...AGAGGTGGGGAACCAAACCTCTCCCTGCCAACTGAAGGTCCTTAGCAGGACACA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021290.2 |
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CDS-3UTR CCA 90 bp | ACCTTCAGTTGGCAGGGAGAGGTTTGGTTCCCCACCTCTCCAGACTCAGGGTGTCCTCTAGGATCTCCTTaGACAGGGCACCGCTCTTGC | + |
Preference number: 4 (lower is better) Translates to: TFSWQGEVWFPTSPDSGCPLGSP*TGHRSC Trigger: GCAAGAGCGGTGCCCTGTCCAAGGAGATCCTAGAGG...ACACCCTGAGTCTGGAGAGGTGGGGAACCAAACCTCTCCCTGCCAACTGAAGGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021290.2 |
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CDS-3UTR CCA 90 bp | ACCTTCAGTTGGCAGGGAGAGGTTTGGTTCCCCACCTCTCCAGACTCAGGGTGTTGGGCTTGCCCGCCGTaGTCATGTGCAGAGCAATCA | + |
Preference number: 4 (lower is better) Translates to: TFSWQGEVWFPTSPDSGCWACPP*SCAEQS Trigger: TGATTGCTCTGCACATGACCACGGCGGGCAAGCCCA...ACACCCTGAGTCTGGAGAGGTGGGGAACCAAACCTCTCCCTGCCAACTGAAGGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021290.2 |
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3UTR CAA 72 bp | TGTCCTGCTAAGGACCTTCAGTTGGCAGGGAGAGGTTaGGTTCCCCACCTCTCCAGACTCAGGGTGTGCGTG | + |
Preference number: 4 (lower is better) Translates to: CPAKDLQLAGRG*VPHLSRLRVCV Trigger: CACGCACACCCTGAGTCTGGAGAGGTGGGGAACCAAACCTCTCCCTGCCAACTGAAGGTCCTTAGCAGGACA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021290.2 |
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CDS-3UTR CCA 90 bp | GACTCCTACGCCCTAAGCTTGGGATTATCACAGGGCTACCTGGGCAGGAGAAGGTCCTTCAGGAAGGACTaGTACCAGGCACTCAGCTCC | + |
Preference number: 4 (lower is better) Translates to: DSYALSLGLSQGYLGRRRSFRKD*YQALSS Trigger: GGAGCTGAGTGCCTGGTACCAGTCCTTCCTGAAGGA...CCTTCTCCTGCCCAGGTAGCCCTGTGATAATCCCAAGCTTAGGGCGTAGGAGTC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021290.2 |
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CDS-3UTR CCA 90 bp | GAGTTGTGTCCTGCTAAGGACCTTCAGTTGGCAGGGAGAGGTTTGGTTCCCCACGCGTACCATCGCTGTTaGCATCGAAGCTGCGGAACA | + |
Preference number: 4 (lower is better) Translates to: ELCPAKDLQLAGRGLVPHAYHRC*HRSCGT Trigger: TGTTCCGCAGCTTCGATGCCAACAGCGATGGTACGC...GTGGGGAACCAAACCTCTCCCTGCCAACTGAAGGTCCTTAGCAGGACACAACTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021290.2 |
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CDS-3UTR TCA 90 bp | CTACGCCCTAAGCTTGGGATTATCACAGGGCTACCTGGGCAGGAGAAGGAGACATCAGCTCCTCCTCTGTaGACTTGGTGTTCAGTTGCA | + |
Preference number: 4 (lower is better) Translates to: LRPKLGIITGLPGQEKETSAPPL*TWCSVA Trigger: TGCAACTGAACACCAAGTTCACAGAGGAGGAGCTGA...TGTCTCCTTCTCCTGCCCAGGTAGCCCTGTGATAATCCCAAGCTTAGGGCGTAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021290.2 |
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CDS-3UTR TCA 90 bp | AAGGACCTTCAGTTGGCAGGGAGAGGTTTGGTTCCCCACCTCTCCAGACTCAGGGCACTTCATTTTTGCTaGTGGTCCCATTGCCGTCTA | + |
Preference number: 4 (lower is better) Translates to: KDLQLAGRGLVPHLSRLRALHFC*WSHCRL Trigger: TAGACGGCAATGGGACCATCAGCAAAAATGAAGTGC...CCTGAGTCTGGAGAGGTGGGGAACCAAACCTCTCCCTGCCAACTGAAGGTCCTT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021290.2 |
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CDS-3UTR GCA 90 bp | GACCTTCAGTTGGCAGGGAGAGGTTTGGTTCCCCACCTCTCCAGACTCAGGGTGTTTCTTTCCAAAGAATaGCCAGATCTTCTCAGCCCG | + |
Preference number: 4 (lower is better) Translates to: DLQLAGRGLVPHLSRLRVFLSKE*PDLLSP Trigger: CGGGCTGAGAAGATCTGGGCATTCTTTGGAAAGAAA...CACCCTGAGTCTGGAGAGGTGGGGAACCAAACCTCTCCCTGCCAACTGAAGGTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021290.2 |
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CDS-3UTR CCA 90 bp | TGTGTCCTGCTAAGGACCTTCAGTTGGCAGGGAGAGGTTTGGTTCCCCACCTCTCTCAGCCCGCTTTTCTaGGGTGTTTTCATCATCTGG | + |
Preference number: 4 (lower is better) Translates to: CVLLRTFSWQGEVWFPTSLSPLF*GVFIIW Trigger: CCAGATGATGAAAACACCCCAGAAAAGCGGGCTGAG...AGAGGTGGGGAACCAAACCTCTCCCTGCCAACTGAAGGTCCTTAGCAGGACACA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000021290.2 |
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CDS-3UTR CCA 90 bp | GACTCCTACGCCCTAAGCTTGGGATTATCACAGGGCTACCTGGGCAGGAGAAGGGGTGTTTTCATCATCTaGGAGGAGTTTCACATCCTC | + |
Preference number: 4 (lower is better) Translates to: DSYALSLGLSQGYLGRRRGVFII*EEFHIL Trigger: GAGGATGTGAAACTCCTCCCAGATGATGAAAACACC...CCTTCTCCTGCCCAGGTAGCCCTGTGATAATCCCAAGCTTAGGGCGTAGGAGTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021290.2 |
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CDS-3UTR TCA 90 bp | GAGTTGTGTCCTGCTAAGGACCTTCAGTTGGCAGGGAGAGGTTTGGTTCCCCACCTCTCCTTCACTTTTTaGGGTTCAAACTGGATCAGT | + |
Preference number: 4 (lower is better) Translates to: ELCPAKDLQLAGRGLVPHLSFTF*GSNWIS Trigger: ACTGATCCAGTTTGAACCTCAAAAAGTGAAGGAGAG...GTGGGGAACCAAACCTCTCCCTGCCAACTGAAGGTCCTTAGCAGGACACAACTC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021290.2 |
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CDS-3UTR GCA 90 bp | TTTTGCATTTATTGGAACCTGCTTACCCAGCAATCCCCAAAGGAGCTTAAGCAGTGTTGGCATCGAAGCTaGGGAACACGTGCTGCGCGT | + |
Preference number: 4 (lower is better) Translates to: FCIYWNLLTQQSPKELKQCWHRS*GTRAAR Trigger: ACGCGCAGCACGTGTTCCGCAGCTTCGATGCCAACA...CTGCTTAAGCTCCTTTGGGGATTGCTGGGTAAGCAGGTTCCAATAAATGCAAAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021290.2 |
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CDS-3UTR CCA 90 bp | TGTGTCCTGCTAAGGACCTTCAGTTGGCAGGGAGAGGTTTGGTTCCCCACCTCTAGTCCGGGAAAAACTTaGAATAGATACTTTCGAACT | + |
Preference number: 4 (lower is better) Translates to: CVLLRTFSWQGEVWFPTSSPGKT*NRYFRT Trigger: AGTTCGAAAGTATCTATTCCAAGTTTTTCCCGGACT...AGAGGTGGGGAACCAAACCTCTCCCTGCCAACTGAAGGTCCTTAGCAGGACACA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021290.2 |
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CDS GCA 90 bp | AAGGCCCACTCGAGCTTCTGCGTGGGCTTGCCCGCCGTGGTCATGTaGAGAGCAATCACGTACTCCTTGAAGTCCAGCGTACCATCGCTG | + |
Preference number: 5 (lower is better) Translates to: KAHSSFCVGLPAVVM*RAITYSLKSSVPSL Trigger: CAGCGATGGTACGCTGGACTTCAAGGAGTACGTGATTGCTCTGCACATGACCACGGCGGGCAAGCCCACGCAGAAGCTCGAGTGGGCCTT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021290.2 |
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CDS-3UTR CAA 90 bp | TGTGTCCTGCTAAGGACCTTCAGTTGGCAGGGAGAGGTTTGGTTCCCCACCTCTAGCTTCTGCGTGGGCTaGCCCGCCGTGGTCATGTGC | + |
Preference number: 5 (lower is better) Translates to: CVLLRTFSWQGEVWFPTSSFCVG*PAVVMC Trigger: GCACATGACCACGGCGGGCAAGCCCACGCAGAAGCT...AGAGGTGGGGAACCAAACCTCTCCCTGCCAACTGAAGGTCCTTAGCAGGACACA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021290.2 |
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CDS GCA 90 bp | TGGTACCAGGCACTCAGCTCCTCCTCTGTGAACTTGGTGTTCAGTTaGAACTCCTCTAGGATCTCCTTGGACAGGGCACCGCTCTTGCTG | + |
Preference number: 5 (lower is better) Translates to: WYQALSSSSVNLVFS*NSSRISLDRAPLLL Trigger: CAGCAAGAGCGGTGCCCTGTCCAAGGAGATCCTAGAGGAGTTGCAACTGAACACCAAGTTCACAGAGGAGGAGCTGAGTGCCTGGTACCA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021290.2 |
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CDS-3UTR CAA 90 bp | GACCTTCAGTTGGCAGGGAGAGGTTTGGTTCCCCACCTCTCCAGACTCAGGGTGTCCAGCACTTCATTTTaGCTGATGGTCCCATTGCCG | + |
Preference number: 5 (lower is better) Translates to: DLQLAGRGLVPHLSRLRVSSTSF*LMVPLP Trigger: CGGCAATGGGACCATCAGCAAAAATGAAGTGCTGGA...CACCCTGAGTCTGGAGAGGTGGGGAACCAAACCTCTCCCTGCCAACTGAAGGTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021290.2 |
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CDS-3UTR CAA 90 bp | CCTAAGCTTGGGATTATCACAGGGCTACCTGGGCAGGAGAAGGAGACAGGTAAACGCAGAATTTCCTTATaGGCCAGGGTCCCCTCGATG | + |
Preference number: 5 (lower is better) Translates to: PKLGIITGLPGQEKETGKRRISL*ARVPSM Trigger: CATCGAGGGGACCCTGGCCAATAAGGAAATTCTGCG...TTTACCTGTCTCCTTCTCCTGCCCAGGTAGCCCTGTGATAATCCCAAGCTTAGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021290.2 |
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CDS-3UTR CAA 90 bp | GTCCTGCTAAGGACCTTCAGTTGGCAGGGAGAGGTTTGGTTCCCCACCTCTCCATTCACATCCTCAGGCTaGATCATTTTGAAGATAGCC | + |
Preference number: 5 (lower is better) Translates to: VLLRTFSWQGEVWFPTSPFTSSG*IILKIA Trigger: GGCTATCTTCAAAATGATCAAGCCTGAGGATGTGAA...TGGAGAGGTGGGGAACCAAACCTCTCCCTGCCAACTGAAGGTCCTTAGCAGGAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021290.2 |
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CDS-3UTR CAA 90 bp | TTTTGCATTTATTGGAACCTGCTTACCCAGCAATCCCCAAAGGAGCTTAAGCAGTCCTCTAGGATCTCCTaGGACAGGGCACCGCTCTTG | + |
Preference number: 5 (lower is better) Translates to: FCIYWNLLTQQSPKELKQSSRIS*DRAPLL Trigger: CAAGAGCGGTGCCCTGTCCAAGGAGATCCTAGAGGA...CTGCTTAAGCTCCTTTGGGGATTGCTGGGTAAGCAGGTTCCAATAAATGCAAAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021290.2 |
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CDS-3UTR CAA 90 bp | TTTTGCATTTATTGGAACCTGCTTACCCAGCAATCCCCAAAGGAGCTTAAGCAGCCTCTCCTTCACTTTTaGAGGTTCAAACTGGATCAG | + |
Preference number: 5 (lower is better) Translates to: FCIYWNLLTQQSPKELKQPLLHF*RFKLDQ Trigger: CTGATCCAGTTTGAACCTCAAAAAGTGAAGGAGAGG...CTGCTTAAGCTCCTTTGGGGATTGCTGGGTAAGCAGGTTCCAATAAATGCAAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000021290.2 |
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CDS GCA 72 bp | TCGAGCTTCTGCGTGGGCTTGCCCGCCGTGGTCATGTaGAGAGCAATCACGTACTCCTTGAAGTCCAGCGTA | + |
Preference number: 6 (lower is better) Translates to: SSFCVGLPAVVM*RAITYSLKSSV Trigger: TACGCTGGACTTCAAGGAGTACGTGATTGCTCTGCACATGACCACGGCGGGCAAGCCCACGCAGAAGCTCGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021290.2 |
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CDS CCA 72 bp | TCCAAAGAATGCCCAGATCTTCTCAGCCCGCTTTTCTaGGGTGTTTTCATCATCTGGGAGGAGTTTCACATC | + |
Preference number: 6 (lower is better) Translates to: SKECPDLLSPLF*GVFIIWEEFHI Trigger: GATGTGAAACTCCTCCCAGATGATGAAAACACCCCAGAAAAGCGGGCTGAGAAGATCTGGGCATTCTTTGGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021290.2 |
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CDS CAA 72 bp | TCTGGGAGGAGTTTCACATCCTCAGGCTTGATCATTTaGAAGATAGCCATGACGATCTCCAGCACTTCATTT | + |
Preference number: 6 (lower is better) Translates to: SGRSFTSSGLII*KIAMTISSTSF Trigger: AAATGAAGTGCTGGAGATCGTCATGGCTATCTTCAAAATGATCAAGCCTGAGGATGTGAAACTCCTCCCAGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021290.2 |
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CDS CAA 72 bp | TTTTCATCATCTGGGAGGAGTTTCACATCCTCAGGCTaGATCATTTTGAAGATAGCCATGACGATCTCCAGC | + |
Preference number: 6 (lower is better) Translates to: FSSSGRSFTSSG*IILKIAMTISS Trigger: GCTGGAGATCGTCATGGCTATCTTCAAAATGATCAAGCCTGAGGATGTGAAACTCCTCCCAGATGATGAAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021290.2 |
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CDS CAA 90 bp | TTTTCATCATCTGGGAGGAGTTTCACATCCTCAGGCTTGATCATTTaGAAGATAGCCATGACGATCTCCAGCACTTCATTTTTGCTGATG | + |
Preference number: 6 (lower is better) Translates to: FSSSGRSFTSSGLII*KIAMTISSTSFLLM Trigger: CATCAGCAAAAATGAAGTGCTGGAGATCGTCATGGCTATCTTCAAAATGATCAAGCCTGAGGATGTGAAACTCCTCCCAGATGATGAAAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021290.2 |