RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for RCVRN (Mus musculus)

Ensembl gene IDs: ENSMUSG00000020907

Ensembl transcript IDs: ENSMUST00000021290.2

Found 34 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp TCCCCACCTCTCCAGACTCAGGGTGTGCGTGCGCAGGCTGATGCTTaGAATGCTCACACTGCAGGTGTTTGTGTGGGGGTGAGGTGGGGG +
Preference number: 1 (lower is better)
Translates to: SPPLQTQGVRAQADA*NAHTAGVCVGVRWG
Trigger: CCCCCACCTCACCCCCACACAAACACCTGCAGTGTGAGCATTGCAAGCATCAGCCTGCGCACGCACACCCTGAGTCTGGAGAGGTGGGGA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000021290.2
3UTR TCA 90 bp ATTATCACAGGGCTACCTGGGCAGGAGAAGGAGACAGGTAAAGTGTaGAGGATGGGGAGGACACTGAAGACAAAAGGAAGCAGGAGTTGT +
Preference number: 1 (lower is better)
Translates to: IITGLPGQEKETGKV*RMGRTLKTKGSRSC
Trigger: ACAACTCCTGCTTCCTTTTGTCTTCAGTGTCCTCCCCATCCTTCACACTTTACCTGTCTCCTTCTCCTGCCCAGGTAGCCCTGTGATAAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021290.2
3UTR TCA 90 bp TGGAACCTGCTTACCCAGCAATCCCCAAAGGAGCTTAAGCAGGAATaGTATTTAGGACTCCTACGCCCTAAGCTTGGGATTATCACAGGG +
Preference number: 1 (lower is better)
Translates to: WNLLTQQSPKELKQE*YLGLLRPKLGIITG
Trigger: CCCTGTGATAATCCCAAGCTTAGGGCGTAGGAGTCCTAAATATCATTCCTGCTTAAGCTCCTTTGGGGATTGCTGGGTAAGCAGGTTCCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021290.2
3UTR-3UTR GCA 90 bp CTACGCCCTAAGCTTGGGATTATCACAGGGCTACCTGGGCAGGAGAAGGAGACATTGCAATGCTCACACTaGAGGTGTTTGTGTGGGGGT +
Preference number: 2 (lower is better)
Translates to: LRPKLGIITGLPGQEKETLQCSH*RCLCGG
Trigger: ACCCCCACACAAACACCTGCAGTGTGAGCATTGCAA...TGTCTCCTTCTCCTGCCCAGGTAGCCCTGTGATAATCCCAAGCTTAGGGCGTAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000021290.2
3UTR TCA 72 bp GGGCTACCTGGGCAGGAGAAGGAGACAGGTAAAGTGTaGAGGATGGGGAGGACACTGAAGACAAAAGGAAGC +
Preference number: 3 (lower is better)
Translates to: GLPGQEKETGKV*RMGRTLKTKGS
Trigger: GCTTCCTTTTGTCTTCAGTGTCCTCCCCATCCTTCACACTTTACCTGTCTCCTTCTCCTGCCCAGGTAGCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021290.2
3UTR-3UTR CAA 90 bp GACTCCTACGCCCTAAGCTTGGGATTATCACAGGGCTACCTGGGCAGGAGAAGGAAAAGGAAGCAGGAGTaGTGTCCTGCTAAGGACCTT +
Preference number: 3 (lower is better)
Translates to: DSYALSLGLSQGYLGRRRKRKQE*CPAKDL
Trigger: AAGGTCCTTAGCAGGACACAACTCCTGCTTCCTTTT...CCTTCTCCTGCCCAGGTAGCCCTGTGATAATCCCAAGCTTAGGGCGTAGGAGTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021290.2
CDS-3UTR CCA 90 bp GACCTTCAGTTGGCAGGGAGAGGTTTGGTTCCCCACCTCTCCAGACTCAGGGTGGCTGCGCGTAGGCCTTaGGGTCGGAGTCCGGGAAAA +
Preference number: 4 (lower is better)
Translates to: DLQLAGRGLVPHLSRLRVAARRP*GRSPGK
Trigger: TTTTCCCGGACTCCGACCCCAAGGCCTACGCGCAGC...CACCCTGAGTCTGGAGAGGTGGGGAACCAAACCTCTCCCTGCCAACTGAAGGTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021290.2
CDS-3UTR GCA 90 bp TGTGTCCTGCTAAGGACCTTCAGTTGGCAGGGAGAGGTTTGGTTCCCCACCTCTGCTTCTGCGTGGGCTTaGCCGCCGTGGTCATGTGCA +
Preference number: 4 (lower is better)
Translates to: CVLLRTFSWQGEVWFPTSASAWA*PPWSCA
Trigger: TGCACATGACCACGGCGGGCAAGCCCACGCAGAAGC...AGAGGTGGGGAACCAAACCTCTCCCTGCCAACTGAAGGTCCTTAGCAGGACACA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021290.2
CDS-3UTR CCA 90 bp ACCTTCAGTTGGCAGGGAGAGGTTTGGTTCCCCACCTCTCCAGACTCAGGGTGTCCTCTAGGATCTCCTTaGACAGGGCACCGCTCTTGC +
Preference number: 4 (lower is better)
Translates to: TFSWQGEVWFPTSPDSGCPLGSP*TGHRSC
Trigger: GCAAGAGCGGTGCCCTGTCCAAGGAGATCCTAGAGG...ACACCCTGAGTCTGGAGAGGTGGGGAACCAAACCTCTCCCTGCCAACTGAAGGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021290.2
CDS-3UTR CCA 90 bp ACCTTCAGTTGGCAGGGAGAGGTTTGGTTCCCCACCTCTCCAGACTCAGGGTGTTGGGCTTGCCCGCCGTaGTCATGTGCAGAGCAATCA +
Preference number: 4 (lower is better)
Translates to: TFSWQGEVWFPTSPDSGCWACPP*SCAEQS
Trigger: TGATTGCTCTGCACATGACCACGGCGGGCAAGCCCA...ACACCCTGAGTCTGGAGAGGTGGGGAACCAAACCTCTCCCTGCCAACTGAAGGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021290.2
3UTR CAA 72 bp TGTCCTGCTAAGGACCTTCAGTTGGCAGGGAGAGGTTaGGTTCCCCACCTCTCCAGACTCAGGGTGTGCGTG +
Preference number: 4 (lower is better)
Translates to: CPAKDLQLAGRG*VPHLSRLRVCV
Trigger: CACGCACACCCTGAGTCTGGAGAGGTGGGGAACCAAACCTCTCCCTGCCAACTGAAGGTCCTTAGCAGGACA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021290.2
CDS-3UTR CCA 90 bp GACTCCTACGCCCTAAGCTTGGGATTATCACAGGGCTACCTGGGCAGGAGAAGGTCCTTCAGGAAGGACTaGTACCAGGCACTCAGCTCC +
Preference number: 4 (lower is better)
Translates to: DSYALSLGLSQGYLGRRRSFRKD*YQALSS
Trigger: GGAGCTGAGTGCCTGGTACCAGTCCTTCCTGAAGGA...CCTTCTCCTGCCCAGGTAGCCCTGTGATAATCCCAAGCTTAGGGCGTAGGAGTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021290.2
CDS-3UTR CCA 90 bp GAGTTGTGTCCTGCTAAGGACCTTCAGTTGGCAGGGAGAGGTTTGGTTCCCCACGCGTACCATCGCTGTTaGCATCGAAGCTGCGGAACA +
Preference number: 4 (lower is better)
Translates to: ELCPAKDLQLAGRGLVPHAYHRC*HRSCGT
Trigger: TGTTCCGCAGCTTCGATGCCAACAGCGATGGTACGC...GTGGGGAACCAAACCTCTCCCTGCCAACTGAAGGTCCTTAGCAGGACACAACTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021290.2
CDS-3UTR TCA 90 bp CTACGCCCTAAGCTTGGGATTATCACAGGGCTACCTGGGCAGGAGAAGGAGACATCAGCTCCTCCTCTGTaGACTTGGTGTTCAGTTGCA +
Preference number: 4 (lower is better)
Translates to: LRPKLGIITGLPGQEKETSAPPL*TWCSVA
Trigger: TGCAACTGAACACCAAGTTCACAGAGGAGGAGCTGA...TGTCTCCTTCTCCTGCCCAGGTAGCCCTGTGATAATCCCAAGCTTAGGGCGTAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021290.2
CDS-3UTR TCA 90 bp AAGGACCTTCAGTTGGCAGGGAGAGGTTTGGTTCCCCACCTCTCCAGACTCAGGGCACTTCATTTTTGCTaGTGGTCCCATTGCCGTCTA +
Preference number: 4 (lower is better)
Translates to: KDLQLAGRGLVPHLSRLRALHFC*WSHCRL
Trigger: TAGACGGCAATGGGACCATCAGCAAAAATGAAGTGC...CCTGAGTCTGGAGAGGTGGGGAACCAAACCTCTCCCTGCCAACTGAAGGTCCTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000021290.2
CDS-3UTR GCA 90 bp GACCTTCAGTTGGCAGGGAGAGGTTTGGTTCCCCACCTCTCCAGACTCAGGGTGTTTCTTTCCAAAGAATaGCCAGATCTTCTCAGCCCG +
Preference number: 4 (lower is better)
Translates to: DLQLAGRGLVPHLSRLRVFLSKE*PDLLSP
Trigger: CGGGCTGAGAAGATCTGGGCATTCTTTGGAAAGAAA...CACCCTGAGTCTGGAGAGGTGGGGAACCAAACCTCTCCCTGCCAACTGAAGGTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021290.2
CDS-3UTR CCA 90 bp TGTGTCCTGCTAAGGACCTTCAGTTGGCAGGGAGAGGTTTGGTTCCCCACCTCTCTCAGCCCGCTTTTCTaGGGTGTTTTCATCATCTGG +
Preference number: 4 (lower is better)
Translates to: CVLLRTFSWQGEVWFPTSLSPLF*GVFIIW
Trigger: CCAGATGATGAAAACACCCCAGAAAAGCGGGCTGAG...AGAGGTGGGGAACCAAACCTCTCCCTGCCAACTGAAGGTCCTTAGCAGGACACA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000021290.2
CDS-3UTR CCA 90 bp GACTCCTACGCCCTAAGCTTGGGATTATCACAGGGCTACCTGGGCAGGAGAAGGGGTGTTTTCATCATCTaGGAGGAGTTTCACATCCTC +
Preference number: 4 (lower is better)
Translates to: DSYALSLGLSQGYLGRRRGVFII*EEFHIL
Trigger: GAGGATGTGAAACTCCTCCCAGATGATGAAAACACC...CCTTCTCCTGCCCAGGTAGCCCTGTGATAATCCCAAGCTTAGGGCGTAGGAGTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021290.2
CDS-3UTR TCA 90 bp GAGTTGTGTCCTGCTAAGGACCTTCAGTTGGCAGGGAGAGGTTTGGTTCCCCACCTCTCCTTCACTTTTTaGGGTTCAAACTGGATCAGT +
Preference number: 4 (lower is better)
Translates to: ELCPAKDLQLAGRGLVPHLSFTF*GSNWIS
Trigger: ACTGATCCAGTTTGAACCTCAAAAAGTGAAGGAGAG...GTGGGGAACCAAACCTCTCCCTGCCAACTGAAGGTCCTTAGCAGGACACAACTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000021290.2
CDS-3UTR GCA 90 bp TTTTGCATTTATTGGAACCTGCTTACCCAGCAATCCCCAAAGGAGCTTAAGCAGTGTTGGCATCGAAGCTaGGGAACACGTGCTGCGCGT +
Preference number: 4 (lower is better)
Translates to: FCIYWNLLTQQSPKELKQCWHRS*GTRAAR
Trigger: ACGCGCAGCACGTGTTCCGCAGCTTCGATGCCAACA...CTGCTTAAGCTCCTTTGGGGATTGCTGGGTAAGCAGGTTCCAATAAATGCAAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021290.2
CDS-3UTR CCA 90 bp TGTGTCCTGCTAAGGACCTTCAGTTGGCAGGGAGAGGTTTGGTTCCCCACCTCTAGTCCGGGAAAAACTTaGAATAGATACTTTCGAACT +
Preference number: 4 (lower is better)
Translates to: CVLLRTFSWQGEVWFPTSSPGKT*NRYFRT
Trigger: AGTTCGAAAGTATCTATTCCAAGTTTTTCCCGGACT...AGAGGTGGGGAACCAAACCTCTCCCTGCCAACTGAAGGTCCTTAGCAGGACACA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000021290.2
CDS GCA 90 bp AAGGCCCACTCGAGCTTCTGCGTGGGCTTGCCCGCCGTGGTCATGTaGAGAGCAATCACGTACTCCTTGAAGTCCAGCGTACCATCGCTG +
Preference number: 5 (lower is better)
Translates to: KAHSSFCVGLPAVVM*RAITYSLKSSVPSL
Trigger: CAGCGATGGTACGCTGGACTTCAAGGAGTACGTGATTGCTCTGCACATGACCACGGCGGGCAAGCCCACGCAGAAGCTCGAGTGGGCCTT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021290.2
CDS-3UTR CAA 90 bp TGTGTCCTGCTAAGGACCTTCAGTTGGCAGGGAGAGGTTTGGTTCCCCACCTCTAGCTTCTGCGTGGGCTaGCCCGCCGTGGTCATGTGC +
Preference number: 5 (lower is better)
Translates to: CVLLRTFSWQGEVWFPTSSFCVG*PAVVMC
Trigger: GCACATGACCACGGCGGGCAAGCCCACGCAGAAGCT...AGAGGTGGGGAACCAAACCTCTCCCTGCCAACTGAAGGTCCTTAGCAGGACACA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021290.2
CDS GCA 90 bp TGGTACCAGGCACTCAGCTCCTCCTCTGTGAACTTGGTGTTCAGTTaGAACTCCTCTAGGATCTCCTTGGACAGGGCACCGCTCTTGCTG +
Preference number: 5 (lower is better)
Translates to: WYQALSSSSVNLVFS*NSSRISLDRAPLLL
Trigger: CAGCAAGAGCGGTGCCCTGTCCAAGGAGATCCTAGAGGAGTTGCAACTGAACACCAAGTTCACAGAGGAGGAGCTGAGTGCCTGGTACCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021290.2
CDS-3UTR CAA 90 bp GACCTTCAGTTGGCAGGGAGAGGTTTGGTTCCCCACCTCTCCAGACTCAGGGTGTCCAGCACTTCATTTTaGCTGATGGTCCCATTGCCG +
Preference number: 5 (lower is better)
Translates to: DLQLAGRGLVPHLSRLRVSSTSF*LMVPLP
Trigger: CGGCAATGGGACCATCAGCAAAAATGAAGTGCTGGA...CACCCTGAGTCTGGAGAGGTGGGGAACCAAACCTCTCCCTGCCAACTGAAGGTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021290.2
CDS-3UTR CAA 90 bp CCTAAGCTTGGGATTATCACAGGGCTACCTGGGCAGGAGAAGGAGACAGGTAAACGCAGAATTTCCTTATaGGCCAGGGTCCCCTCGATG +
Preference number: 5 (lower is better)
Translates to: PKLGIITGLPGQEKETGKRRISL*ARVPSM
Trigger: CATCGAGGGGACCCTGGCCAATAAGGAAATTCTGCG...TTTACCTGTCTCCTTCTCCTGCCCAGGTAGCCCTGTGATAATCCCAAGCTTAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021290.2
CDS-3UTR CAA 90 bp GTCCTGCTAAGGACCTTCAGTTGGCAGGGAGAGGTTTGGTTCCCCACCTCTCCATTCACATCCTCAGGCTaGATCATTTTGAAGATAGCC +
Preference number: 5 (lower is better)
Translates to: VLLRTFSWQGEVWFPTSPFTSSG*IILKIA
Trigger: GGCTATCTTCAAAATGATCAAGCCTGAGGATGTGAA...TGGAGAGGTGGGGAACCAAACCTCTCCCTGCCAACTGAAGGTCCTTAGCAGGAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021290.2
CDS-3UTR CAA 90 bp TTTTGCATTTATTGGAACCTGCTTACCCAGCAATCCCCAAAGGAGCTTAAGCAGTCCTCTAGGATCTCCTaGGACAGGGCACCGCTCTTG +
Preference number: 5 (lower is better)
Translates to: FCIYWNLLTQQSPKELKQSSRIS*DRAPLL
Trigger: CAAGAGCGGTGCCCTGTCCAAGGAGATCCTAGAGGA...CTGCTTAAGCTCCTTTGGGGATTGCTGGGTAAGCAGGTTCCAATAAATGCAAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021290.2
CDS-3UTR CAA 90 bp TTTTGCATTTATTGGAACCTGCTTACCCAGCAATCCCCAAAGGAGCTTAAGCAGCCTCTCCTTCACTTTTaGAGGTTCAAACTGGATCAG +
Preference number: 5 (lower is better)
Translates to: FCIYWNLLTQQSPKELKQPLLHF*RFKLDQ
Trigger: CTGATCCAGTTTGAACCTCAAAAAGTGAAGGAGAGG...CTGCTTAAGCTCCTTTGGGGATTGCTGGGTAAGCAGGTTCCAATAAATGCAAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000021290.2
CDS GCA 72 bp TCGAGCTTCTGCGTGGGCTTGCCCGCCGTGGTCATGTaGAGAGCAATCACGTACTCCTTGAAGTCCAGCGTA +
Preference number: 6 (lower is better)
Translates to: SSFCVGLPAVVM*RAITYSLKSSV
Trigger: TACGCTGGACTTCAAGGAGTACGTGATTGCTCTGCACATGACCACGGCGGGCAAGCCCACGCAGAAGCTCGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021290.2
CDS CCA 72 bp TCCAAAGAATGCCCAGATCTTCTCAGCCCGCTTTTCTaGGGTGTTTTCATCATCTGGGAGGAGTTTCACATC +
Preference number: 6 (lower is better)
Translates to: SKECPDLLSPLF*GVFIIWEEFHI
Trigger: GATGTGAAACTCCTCCCAGATGATGAAAACACCCCAGAAAAGCGGGCTGAGAAGATCTGGGCATTCTTTGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021290.2
CDS CAA 72 bp TCTGGGAGGAGTTTCACATCCTCAGGCTTGATCATTTaGAAGATAGCCATGACGATCTCCAGCACTTCATTT +
Preference number: 6 (lower is better)
Translates to: SGRSFTSSGLII*KIAMTISSTSF
Trigger: AAATGAAGTGCTGGAGATCGTCATGGCTATCTTCAAAATGATCAAGCCTGAGGATGTGAAACTCCTCCCAGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021290.2
CDS CAA 72 bp TTTTCATCATCTGGGAGGAGTTTCACATCCTCAGGCTaGATCATTTTGAAGATAGCCATGACGATCTCCAGC +
Preference number: 6 (lower is better)
Translates to: FSSSGRSFTSSG*IILKIAMTISS
Trigger: GCTGGAGATCGTCATGGCTATCTTCAAAATGATCAAGCCTGAGGATGTGAAACTCCTCCCAGATGATGAAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021290.2
CDS CAA 90 bp TTTTCATCATCTGGGAGGAGTTTCACATCCTCAGGCTTGATCATTTaGAAGATAGCCATGACGATCTCCAGCACTTCATTTTTGCTGATG +
Preference number: 6 (lower is better)
Translates to: FSSSGRSFTSSGLII*KIAMTISSTSFLLM
Trigger: CATCAGCAAAAATGAAGTGCTGGAGATCGTCATGGCTATCTTCAAAATGATCAAGCCTGAGGATGTGAAACTCCTCCCAGATGATGAAAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000021290.2