RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for RCOR3 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000037395

Ensembl transcript IDs: ENSMUST00000073279.13, ENSMUST00000110849.10, ENSMUST00000192128.6, ENSMUST00000192158.6, ENSMUST00000192222.6, ENSMUST00000192491.6, ENSMUST00000192866.6, ENSMUST00000193144.2, ENSMUST00000194750.6

Found 376 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GAGTGGAGGAGGTTGTCGGTGAAGAGCAGGGGCGGCAGGCAGTGTTaGACGAAGAAGTGGTGGAGGCTGGTTCAGAGTGGCAATGGGGAC +
Preference number: 1 (lower is better)
Translates to: EWRRLSVKSRGGRQC*TKKWWRLVQSGNGD
Trigger: GTCCCCATTGCCACTCTGAACCAGCCTCCACCACTTCTTCGTCCAACACTGCCTGCCGCCCCTGCTCTTCACCGACAACCTCCTCCACTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000192158.6
ENSMUST00000192222.6
3UTR GCA 90 bp GCTCCATGTCCAGTTGCCTCAGGATGGTGTTGGCTGCGTTGGGGCTaGAGGAGACAGCCACCACGTCCTCCTGGGTTAGATACATGCCCT +
Preference number: 1 (lower is better)
Translates to: APCPVASGWCWLRWG*RRQPPRPPGLDTCP
Trigger: AGGGCATGTATCTAACCCAGGAGGACGTGGTGGCTGTCTCCTGCAGCCCCAACGCAGCCAACACCATCCTGAGGCAACTGGACATGGAGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000192158.6
3UTR CCA 90 bp TCGGTGAAGAGCAGGGGCGGCAGGCAGTGTTGGACGAAGAAGTGGTaGAGGCTGGTTCAGAGTGGCAATGGGGACTGTTGGTGTTGGAGT +
Preference number: 1 (lower is better)
Translates to: SVKSRGGRQCWTKKW*RLVQSGNGDCWCWS
Trigger: ACTCCAACACCAACAGTCCCCATTGCCACTCTGAACCAGCCTCCACCACTTCTTCGTCCAACACTGCCTGCCGCCCCTGCTCTTCACCGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000192158.6
ENSMUST00000192222.6
3UTR CCA 90 bp TTGTCGGTGAAGAGCAGGGGCGGCAGGCAGTGTTGGACGAAGAAGTaGTGGAGGCTGGTTCAGAGTGGCAATGGGGACTGTTGGTGTTGG +
Preference number: 1 (lower is better)
Translates to: LSVKSRGGRQCWTKK*WRLVQSGNGDCWCW
Trigger: CCAACACCAACAGTCCCCATTGCCACTCTGAACCAGCCTCCACCACTTCTTCGTCCAACACTGCCTGCCGCCCCTGCTCTTCACCGACAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000192158.6
ENSMUST00000192222.6
3UTR CCA 90 bp GGTGCTGCAGACTCTGGTACTCTCTCCGGCCCAGGCCGATCTTGCTaGTTTGGACCGGCTGGTCAGCGTTACCCTCTCTTTTGGCTTCTT +
Preference number: 1 (lower is better)
Translates to: GAADSGTLSGPGRSC*FGPAGQRYPLFWLL
Trigger: AAGAAGCCAAAAGAGAGGGTAACGCTGACCAGCCGGTCCAAACCAGCAAGATCGGCCTGGGCCGGAGAGAGTACCAGAGTCTGCAGCACC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000192158.6
3UTR CCA 90 bp AGAGCAGGGGCGGCAGGCAGTGTTGGACGAAGAAGTGGTGGAGGCTaGTTCAGAGTGGCAATGGGGACTGTTGGTGTTGGAGTGGATGAT +
Preference number: 1 (lower is better)
Translates to: RAGAAGSVGRRSGGG*FRVAMGTVGVGVDD
Trigger: ATCATCCACTCCAACACCAACAGTCCCCATTGCCACTCTGAACCAGCCTCCACCACTTCTTCGTCCAACACTGCCTGCCGCCCCTGCTCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000192158.6
ENSMUST00000192222.6
3UTR CCA 90 bp AGATCAGCTCCATGTCCAGTTGCCTCAGGATGGTGTTGGCTGCGTTaGGGCTGCAGGAGACAGCCACCACGTCCTCCTGGGTTAGATACA +
Preference number: 1 (lower is better)
Translates to: RSAPCPVASGWCWLR*GCRRQPPRPPGLDT
Trigger: TGTATCTAACCCAGGAGGACGTGGTGGCTGTCTCCTGCAGCCCCAACGCAGCCAACACCATCCTGAGGCAACTGGACATGGAGCTGATCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000192158.6
3UTR TCA 90 bp AGCGTAATTAGTGCAGTGAAGGCTGTGAATCTGTCTGAATCCCAATaGGTGAAGGTGGCTGCTGACCGCCAACCGTGGTCAACACTGGTC +
Preference number: 1 (lower is better)
Translates to: SVISAVKAVNLSESQ*VKVAADRQPWSTLV
Trigger: GACCAGTGTTGACCACGGTTGGCGGTCAGCAGCCACCTTCACTCATTGGGATTCAGACAGATTCACAGCCTTCACTGCACTAATTACGCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110849.10
ENSMUST00000192158.6
ENSMUST00000192222.6
3UTR CCA 90 bp AAACCCCTTGGTAGACAGAATACTTTTCTTCCCATGAGATCACAGTaGGCACTAGAAAGGAGGCCAAACAGAGGCCTCCTGCTGTGTCAC +
Preference number: 1 (lower is better)
Translates to: KPLGRQNTFLPMRSQ*ALERRPNRGLLLCH
Trigger: GTGACACAGCAGGAGGCCTCTGTTTGGCCTCCTTTCTAGTGCCCACTGTGATCTCATGGGAAGAAAAGTATTCTGTCTACCAAGGGGTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000073279.13
ENSMUST00000110849.10
ENSMUST00000192158.6
3UTR CCA 90 bp GAGCTTCTTCTACGTCATCATCACTGTCACCCTGATTGTGTCTATTaGCTAGTTTACGAGCCTGGCGATCCATCAAACTTGTCCTTGAGC +
Preference number: 1 (lower is better)
Translates to: ELLLRHHHCHPDCVY*LVYEPGDPSNLSLS
Trigger: GCTCAAGGACAAGTTTGATGGATCGCCAGGCTCGTAAACTAGCCAATAGACACAATCAGGGTGACAGTGATGATGACGTAGAAGAAGCTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000192158.6
3UTR CCA 90 bp TTTTGGCTTCTTTCTTTGGGTCGTAGTCACTGTCGTTTCCATCCATaGGGTGAGCTTCTTCTACGTCATCATCACTGTCACCCTGATTGT +
Preference number: 1 (lower is better)
Translates to: FWLLSLGRSHCRFHP*GELLLRHHHCHPDC
Trigger: ACAATCAGGGTGACAGTGATGATGACGTAGAAGAAGCTCACCCCATGGATGGAAACGACAGTGACTACGACCCAAAGAAAGAAGCCAAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000192158.6
3UTR CCA 90 bp TTAACAGTAGAAATAATACACTTTCGCTCTGCTAGGACCAGAAGCTaGCATGTCCTTATGACTAAGCAGTCAGAGACGCCTCACGAGGAA +
Preference number: 1 (lower is better)
Translates to: LTVEIIHFRSARTRS*HVLMTKQSETPHEE
Trigger: TTCCTCGTGAGGCGTCTCTGACTGCTTAGTCATAAGGACATGCCAGCTTCTGGTCCTAGCAGAGCGAAAGTGTATTATTTCTACTGTTAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000192128.6
ENSMUST00000192491.6
3UTR TCA 90 bp CTTTTGCAATGGCGATATATTCATCCACTGTATGTTTCCTATATCTaGTGTGCCGCAAAGGATTCGGGTCCGCTACATCACACTGAAGTC +
Preference number: 1 (lower is better)
Translates to: LLQWRYIHPLYVSYI*CAAKDSGPLHHTEV
Trigger: GACTTCAGTGTGATGTAGCGGACCCGAATCCTTTGCGGCACATCAGATATAGGAAACATACAGTGGATGAATATATCGCCATTGCAAAAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000192158.6
3UTR CCA 90 bp TGTGATGCCGATGACTTAGCCCTAAATCAAACCACAAGCTCAGGTTaGTTGAAAGGATCATACAAATGTATTCAGATGTTCAACAGAGAT +
Preference number: 1 (lower is better)
Translates to: CDADDLALNQTTSSG*LKGSYKCIQMFNRD
Trigger: ATCTCTGTTGAACATCTGAATACATTTGTATGATCCTTTCAACCAACCTGAGCTTGTGGTTTGATTTAGGGCTAAGTCATCGGCATCACA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073279.13
ENSMUST00000110849.10
ENSMUST00000192158.6
3UTR-3UTR TCA 90 bp GGAGGCCAAACAGAGGCCTCCTGCTGTGTCACACCACTTACACTAGTCCACCGCTTGGCCGGGGCTGGATaGACCGAGCCTGCTGCTGGA +
Preference number: 2 (lower is better)
Translates to: GGQTEASCCVTPLTLVHRLAGAG*TEPAAG
Trigger: TCCAGCAGCAGGCTCGGTTCATCCAGCCCCGGCCAA...GCGGTGGACTAGTGTAAGTGGTGTGACACAGCAGGAGGCCTCTGTTTGGCCTCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000192158.6
ENSMUST00000192222.6
3UTR-3UTR TCA 90 bp TGGCTGCGTTGGGGCTGCAGGAGACAGCCACCACGTCCTCCTGGGTTAGATACAAGAGGTGGAGGAGGCTaGTTGAGAGTTGGCCGGGGC +
Preference number: 2 (lower is better)
Translates to: WLRWGCRRQPPRPPGLDTRGGGG*LRVGRG
Trigger: GCCCCGGCCAACTCTCAATCAGCCTCCTCCACCTCT...TGTATCTAACCCAGGAGGACGTGGTGGCTGTCTCCTGCAGCCCCAACGCAGCCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000192158.6
3UTR-3UTR CCA 90 bp TGGCTGCGTTGGGGCTGCAGGAGACAGCCACCACGTCCTCCTGGGTTAGATACAAGAGTTGGCCGGGGCTaGATGAACCGAGCCTGCTGC +
Preference number: 2 (lower is better)
Translates to: WLRWGCRRQPPRPPGLDTRVGRG*MNRACC
Trigger: GCAGCAGGCTCGGTTCATCCAGCCCCGGCCAACTCT...TGTATCTAACCCAGGAGGACGTGGTGGCTGTCTCCTGCAGCCCCAACGCAGCCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000192158.6
3UTR CAA 90 bp GGAGTGGAGGAGGTTGTCGGTGAAGAGCAGGGGCGGCAGGCAGTGTaGGACGAAGAAGTGGTGGAGGCTGGTTCAGAGTGGCAATGGGGA +
Preference number: 2 (lower is better)
Translates to: GVEEVVGEEQGRQAV*DEEVVEAGSEWQWG
Trigger: TCCCCATTGCCACTCTGAACCAGCCTCCACCACTTCTTCGTCCAACACTGCCTGCCGCCCCTGCTCTTCACCGACAACCTCCTCCACTCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000192158.6
ENSMUST00000192222.6
3UTR CAA 90 bp CGCTTGAGAGAGATCAGCTCCATGTCCAGTTGCCTCAGGATGGTGTaGGCTGCGTTGGGGCTGCAGGAGACAGCCACCACGTCCTCCTGG +
Preference number: 2 (lower is better)
Translates to: RLREISSMSSCLRMV*AALGLQETATTSSW
Trigger: CCAGGAGGACGTGGTGGCTGTCTCCTGCAGCCCCAACGCAGCCAACACCATCCTGAGGCAACTGGACATGGAGCTGATCTCTCTCAAGCG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000192158.6
3UTR-3UTR CCA 90 bp GGTGATGGACCCAGAGTCCGAGGAGCCTGTGGGGTCTGTGCCTCAGGCGGTTTGAGAAGTGGTGGAGGCTaGTTCAGAGTGGCAATGGGG +
Preference number: 2 (lower is better)
Translates to: GDGPRVRGACGVCASGGLRSGGG*FRVAMG
Trigger: CCCCATTGCCACTCTGAACCAGCCTCCACCACTTCT...CAAACCGCCTGAGGCACAGACCCCACAGGCTCCTCGGACTCTGGGTCCATCACC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000192158.6
3UTR-3UTR CCA 90 bp CCAAACAGAGGCCTCCTGCTGTGTCACACCACTTACACTAGTCCACCGCCACACAGTCCGAGGAGCCTGTaGGGTCTGTGCCTCCGCTTC +
Preference number: 2 (lower is better)
Translates to: PNRGLLLCHTTYTSPPPHSPRSL*GLCLRF
Trigger: GAAGCGGAGGCACAGACCCCACAGGCTCCTCGGACT...GTGTGGCGGTGGACTAGTGTAAGTGGTGTGACACAGCAGGAGGCCTCTGTTTGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000192222.6
3UTR CAA 90 bp GAGATCAGCTCCATGTCCAGTTGCCTCAGGATGGTGTTGGCTGCGTaGGGGCTGCAGGAGACAGCCACCACGTCCTCCTGGGTTAGATAC +
Preference number: 2 (lower is better)
Translates to: EISSMSSCLRMVLAA*GLQETATTSSWVRY
Trigger: GTATCTAACCCAGGAGGACGTGGTGGCTGTCTCCTGCAGCCCCAACGCAGCCAACACCATCCTGAGGCAACTGGACATGGAGCTGATCTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000192158.6
3UTR-3UTR TCA 90 bp GGAGGCCAAACAGAGGCCTCCTGCTGTGTCACACCACTTACACTAGTCCACCGCCTGAATCCCAATGAGTaGAGGTGGCTGCTGACCGCC +
Preference number: 2 (lower is better)
Translates to: GGQTEASCCVTPLTLVHRLNPNE*RWLLTA
Trigger: GGCGGTCAGCAGCCACCTTCACTCATTGGGATTCAG...GCGGTGGACTAGTGTAAGTGGTGTGACACAGCAGGAGGCCTCTGTTTGGCCTCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110849.10
ENSMUST00000192158.6
ENSMUST00000192222.6
3UTR-3UTR TCA 90 bp TTAGCTAGTCCTCACACACCCTCACAGCACACCACCAGAAGGGCGGGGCGGCTCGCTGGCATGTCCTTATaGCTAAGCAGTCAGAGACGC +
Preference number: 2 (lower is better)
Translates to: LASPHTPSQHTTRRAGRLAGMSL*LSSQRR
Trigger: GCGTCTCTGACTGCTTAGTCATAAGGACATGCCAGC...GAGCCGCCCCGCCCTTCTGGTGGTGTGCTGTGAGGGTGTGTGAGGACTAGCTAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000192128.6
ENSMUST00000192491.6
3UTR CAA 90 bp AGCATTCTGAACCTGGCGCTTGAGAGAGATCAGCTCCATGTCCAGTaGCCTCAGGATGGTGTTGGCTGCGTTGGGGCTGCAGGAGACAGC +
Preference number: 2 (lower is better)
Translates to: SILNLALERDQLHVQ*PQDGVGCVGAAGDS
Trigger: GCTGTCTCCTGCAGCCCCAACGCAGCCAACACCATCCTGAGGCAACTGGACATGGAGCTGATCTCTCTCAAGCGCCAGGTTCAGAATGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000192158.6
3UTR-3UTR TCA 90 bp GGCTGGTTCAGAGTGGCAATGGGGACTGTTGGTGTTGGAGTGGATGATGGGGCACTGAATCCCAATGAGTaGAGGTGGCTGCTGACCGCC +
Preference number: 2 (lower is better)
Translates to: GWFRVAMGTVGVGVDDGALNPNE*RWLLTA
Trigger: GGCGGTCAGCAGCCACCTTCACTCATTGGGATTCAG...TGCCCCATCATCCACTCCAACACCAACAGTCCCCATTGCCACTCTGAACCAGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000192158.6
ENSMUST00000192222.6
3UTR-3UTR GCA 90 bp CCAACCGTGGTCAACACTGGTCTTGGGTTTAGGCGGGGTGGCATGGAGTTAGCATGGATGAACCGAGCCTaGTGCTGGAGTGGAGGAGGT +
Preference number: 2 (lower is better)
Translates to: PTVVNTGLGFRRGGMELAWMNRA*CWSGGG
Trigger: ACCTCCTCCACTCCAGCAGCAGGCTCGGTTCATCCA...TGCTAACTCCATGCCACCCCGCCTAAACCCAAGACCAGTGTTGACCACGGTTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000192158.6
ENSMUST00000192222.6
3UTR-3UTR CCA 90 bp ATCACAGTGGGCACTAGAAAGGAGGCCAAACAGAGGCCTCCTGCTGTGTCACACAGGCTGATTGAGAGTTaGCCGGGGCTGGATGAACCG +
Preference number: 2 (lower is better)
Translates to: ITVGTRKEAKQRPPAVSHRLIES*PGLDEP
Trigger: CGGTTCATCCAGCCCCGGCCAACTCTCAATCAGCCT...GTGTGACACAGCAGGAGGCCTCTGTTTGGCCTCCTTTCTAGTGCCCACTGTGAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000192158.6
ENSMUST00000192222.6
3UTR-3UTR TCA 90 bp TGGCTGCGTTGGGGCTGCAGGAGACAGCCACCACGTCCTCCTGGGTTAGATACAGGCTGTGAATCTGTCTaGATCCCAATGAGTGAAGGT +
Preference number: 2 (lower is better)
Translates to: WLRWGCRRQPPRPPGLDTGCESV*IPMSEG
Trigger: ACCTTCACTCATTGGGATTCAGACAGATTCACAGCC...TGTATCTAACCCAGGAGGACGTGGTGGCTGTCTCCTGCAGCCCCAACGCAGCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000192158.6
3UTR-3UTR CCA 90 bp AGACTGTACTGCAGGTCTACTGACGAGAGACAAGACGATGAAAGCTGTCACGGTATGACCCCTCTGATGTaGGCAGCCTGCGGCCCTAGC +
Preference number: 2 (lower is better)
Translates to: RLYCRSTDERQDDESCHGMTPLM*AACGPS
Trigger: GCTAGGGCCGCAGGCTGCCCACATCAGAGGGGTCAT...ACCGTGACAGCTTTCATCGTCTTGTCTCTCGTCAGTAGACCTGCAGTACAGTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073279.13
ENSMUST00000110849.10
ENSMUST00000192158.6
3UTR-3UTR CCA 90 bp ATCACAGTGGGCACTAGAAAGGAGGCCAAACAGAGGCCTCCTGCTGTGTCACACAGAAGTGGTGGAGGCTaGTTCAGAGTGGCAATGGGG +
Preference number: 2 (lower is better)
Translates to: ITVGTRKEAKQRPPAVSHRSGGG*FRVAMG
Trigger: CCCCATTGCCACTCTGAACCAGCCTCCACCACTTCT...GTGTGACACAGCAGGAGGCCTCTGTTTGGCCTCCTTTCTAGTGCCCACTGTGAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000192158.6
ENSMUST00000192222.6
3UTR-3UTR CCA 90 bp AAGTGGTGGAGGCTGGTTCAGAGTGGCAATGGGGACTGTTGGTGTTGGAGTGGACCCATGAGATCACAGTaGGCACTAGAAAGGAGGCCA +
Preference number: 2 (lower is better)
Translates to: KWWRLVQSGNGDCWCWSGPMRSQ*ALERRP
Trigger: TGGCCTCCTTTCTAGTGCCCACTGTGATCTCATGGG...TCCACTCCAACACCAACAGTCCCCATTGCCACTCTGAACCAGCCTCCACCACTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000192158.6
ENSMUST00000192222.6
3UTR-3UTR TCA 90 bp GAAGGACTAGTTTGCCTTGTTTGGATCAGTCAGATGAGCACTGGTACAATGATAGGAGGAGGTTGTCGGTaGAGAGCAGGGGCGGCAGGC +
Preference number: 2 (lower is better)
Translates to: EGLVCLVWISQMSTGTMIGGGCR*RAGAAG
Trigger: GCCTGCCGCCCCTGCTCTTCACCGACAACCTCCTCC...TATCATTGTACCAGTGCTCATCTGACTGATCCAAACAAGGCAAACTAGTCCTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000192158.6
ENSMUST00000192222.6
3UTR-3UTR TCA 90 bp GGAAGGACTAGTTTGCCTTGTTTGGATCAGTCAGATGAGCACTGGTACAATGATTTGGCCGGGGCTGGATaGACCGAGCCTGCTGCTGGA +
Preference number: 2 (lower is better)
Translates to: GRTSLPCLDQSDEHWYNDLAGAG*TEPAAG
Trigger: TCCAGCAGCAGGCTCGGTTCATCCAGCCCCGGCCAA...ATCATTGTACCAGTGCTCATCTGACTGATCCAAACAAGGCAAACTAGTCCTTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000192158.6
ENSMUST00000192222.6
3UTR-3UTR GCA 90 bp GGTGGAGGCTGGTTCAGAGTGGCAATGGGGACTGTTGGTGTTGGAGTGGATGATCAAACAGAGGCCTCCTaGTGTGTCACACCACTTACA +
Preference number: 2 (lower is better)
Translates to: GGGWFRVAMGTVGVGVDDQTEAS*CVTPLT
Trigger: TGTAAGTGGTGTGACACAGCAGGAGGCCTCTGTTTG...ATCATCCACTCCAACACCAACAGTCCCCATTGCCACTCTGAACCAGCCTCCACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000192158.6
ENSMUST00000192222.6
3UTR-3UTR CCA 90 bp TGGCATGGAGTTAGCAGGGCGAATGAGAGGTGGAGGAGGCTGATTGAGAGTTGGTGTTGGACGAAGAAGTaGTGGAGGCTGGTTCAGAGT +
Preference number: 2 (lower is better)
Translates to: WHGVSRANERWRRLIESWCWTKK*WRLVQS
Trigger: ACTCTGAACCAGCCTCCACCACTTCTTCGTCCAACA...CCAACTCTCAATCAGCCTCCTCCACCTCTCATTCGCCCTGCTAACTCCATGCCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000192158.6
ENSMUST00000192222.6
3UTR-3UTR CCA 90 bp GGTGGAGGCTGGTTCAGAGTGGCAATGGGGACTGTTGGTGTTGGAGTGGATGATTGTTGGACGAAGAAGTaGTGGAGGCTGGTTCAGAGT +
Preference number: 2 (lower is better)
Translates to: GGGWFRVAMGTVGVGVDDCWTKK*WRLVQS
Trigger: ACTCTGAACCAGCCTCCACCACTTCTTCGTCCAACA...ATCATCCACTCCAACACCAACAGTCCCCATTGCCACTCTGAACCAGCCTCCACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000192158.6
ENSMUST00000192222.6
3UTR-3UTR CCA 90 bp GGTGAGCCTTTGTCCAGCGTAATTAGTGCAGTGAAGGCTGTGAATCTGTCTGAAGGCGGCAGGCAGTGTTaGACGAAGAAGTGGTGGAGG +
Preference number: 2 (lower is better)
Translates to: GEPLSSVISAVKAVNLSEGGRQC*TKKWWR
Trigger: CCTCCACCACTTCTTCGTCCAACACTGCCTGCCGCC...TTCAGACAGATTCACAGCCTTCACTGCACTAATTACGCTGGACAAAGGCTCACC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000192158.6
ENSMUST00000192222.6
3UTR-3UTR TCA 90 bp ATCACAGTGGGCACTAGAAAGGAGGCCAAACAGAGGCCTCCTGCTGTGTCACACGGCTGTGAATCTGTCTaGATCCCAATGAGTGAAGGT +
Preference number: 2 (lower is better)
Translates to: ITVGTRKEAKQRPPAVSHGCESV*IPMSEG
Trigger: ACCTTCACTCATTGGGATTCAGACAGATTCACAGCC...GTGTGACACAGCAGGAGGCCTCTGTTTGGCCTCCTTTCTAGTGCCCACTGTGAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110849.10
ENSMUST00000192158.6
ENSMUST00000192222.6
3UTR-3UTR TCA 90 bp TTTTCTTCCCATGAGATCACAGTGGGCACTAGAAAGGAGGCCAAACAGAGGCCTGTCAGTGCTCTTCCCTaGCGGCACCTTAGAAGCACT +
Preference number: 2 (lower is better)
Translates to: FSSHEITVGTRKEAKQRPVSALP*RHLRST
Trigger: AGTGCTTCTAAGGTGCCGTCAGGGAAGAGCACTGAC...AGGCCTCTGTTTGGCCTCCTTTCTAGTGCCCACTGTGATCTCATGGGAAGAAAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000192222.6
3UTR-3UTR TCA 90 bp AGGACTAGTTTGCCTTGTTTGGATCAGTCAGATGAGCACTGGTACAATGATAGGGTGGAGGAGGCTGATTaGGAGTTGGCCGGGGCTGGA +
Preference number: 2 (lower is better)
Translates to: RTSLPCLDQSDEHWYNDRVEEAD*ELAGAG
Trigger: TCCAGCCCCGGCCAACTCTCAATCAGCCTCCTCCAC...CCTATCATTGTACCAGTGCTCATCTGACTGATCCAAACAAGGCAAACTAGTCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000192158.6
ENSMUST00000192222.6
3UTR-3UTR CCA 90 bp GGAGGCCAAACAGAGGCCTCCTGCTGTGTCACACCACTTACACTAGTCCACCGCAAGAAGTTCTTCACTTaGCCAACAGTCTTGTTGCCA +
Preference number: 2 (lower is better)
Translates to: GGQTEASCCVTPLTLVHRKKFFT*PTVLLP
Trigger: TGGCAACAAGACTGTTGGCCAAGTGAAGAACTTCTT...GCGGTGGACTAGTGTAAGTGGTGTGACACAGCAGGAGGCCTCTGTTTGGCCTCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000192222.6
3UTR-3UTR CCA 90 bp ATCACAGTGGGCACTAGAAAGGAGGCCAAACAGAGGCCTCCTGCTGTGTCACACTCAGCATTAGAAGCCTaGGTTCCTTGTTCTGCTTCC +
Preference number: 2 (lower is better)
Translates to: ITVGTRKEAKQRPPAVSHSALEA*VPCSAS
Trigger: GGAAGCAGAACAAGGAACCCAGGCTTCTAATGCTGA...GTGTGACACAGCAGGAGGCCTCTGTTTGGCCTCCTTTCTAGTGCCCACTGTGAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000192222.6
3UTR CAA 90 bp TTTGGACCGGCTGGTCAGCGTTACCCTCTCTTTTGGCTTCTTTCTTaGGGTCGTAGTCACTGTCGTTTCCATCCATGGGGTGAGCTTCTT +
Preference number: 2 (lower is better)
Translates to: FGPAGQRYPLFWLLS*GRSHCRFHPWGELL
Trigger: AAGAAGCTCACCCCATGGATGGAAACGACAGTGACTACGACCCAAAGAAAGAAGCCAAAAGAGAGGGTAACGCTGACCAGCCGGTCCAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000192158.6
3UTR-3UTR GCA 90 bp TGGCTGCGTTGGGGCTGCAGGAGACAGCCACCACGTCCTCCTGGGTTAGATACAGCCATGTTTCTCTTTTaGAATGGCGATATATTCATC +
Preference number: 2 (lower is better)
Translates to: WLRWGCRRQPPRPPGLDTAMFLF*NGDIFI
Trigger: GATGAATATATCGCCATTGCAAAAGAGAAACATGGC...TGTATCTAACCCAGGAGGACGTGGTGGCTGTCTCCTGCAGCCCCAACGCAGCCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000192158.6
3UTR-3UTR CCA 90 bp GGTGAGCCTTTGTCCAGCGTAATTAGTGCAGTGAAGGCTGTGAATCTGTCTGAAGAGGCTGGTTCAGAGTaGCAATGGGGACTGTTGGTG +
Preference number: 2 (lower is better)
Translates to: GEPLSSVISAVKAVNLSEEAGSE*QWGLLV
Trigger: CACCAACAGTCCCCATTGCCACTCTGAACCAGCCTC...TTCAGACAGATTCACAGCCTTCACTGCACTAATTACGCTGGACAAAGGCTCACC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000192158.6
ENSMUST00000192222.6
3UTR-3UTR TCA 90 bp GGAAGGACTAGTTTGCCTTGTTTGGATCAGTCAGATGAGCACTGGTACAATGATCTGAATCCCAATGAGTaGAGGTGGCTGCTGACCGCC +
Preference number: 2 (lower is better)
Translates to: GRTSLPCLDQSDEHWYNDLNPNE*RWLLTA
Trigger: GGCGGTCAGCAGCCACCTTCACTCATTGGGATTCAG...ATCATTGTACCAGTGCTCATCTGACTGATCCAAACAAGGCAAACTAGTCCTTCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110849.10
ENSMUST00000192158.6
ENSMUST00000192222.6
3UTR-3UTR GCA 90 bp TTTTCTTCCCATGAGATCACAGTGGGCACTAGAAAGGAGGCCAAACAGAGGCCTCAAACAGAGGCCTCCTaGTGTGTCACACCACTTACA +
Preference number: 2 (lower is better)
Translates to: FSSHEITVGTRKEAKQRPQTEAS*CVTPLT
Trigger: TGTAAGTGGTGTGACACAGCAGGAGGCCTCTGTTTG...AGGCCTCTGTTTGGCCTCCTTTCTAGTGCCCACTGTGATCTCATGGGAAGAAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000073279.13
ENSMUST00000110849.10
ENSMUST00000192158.6
ENSMUST00000192222.6
3UTR-3UTR GCA 90 bp GGAGGCCAAACAGAGGCCTCCTGCTGTGTCACACCACTTACACTAGTCCACCGCTTTAAACAAGGACTTTaGACTAGGACCCCAAACTAT +
Preference number: 2 (lower is better)
Translates to: GGQTEASCCVTPLTLVHRFKQGL*TRTPNY
Trigger: ATAGTTTGGGGTCCTAGTGCAAAGTCCTTGTTTAAA...GCGGTGGACTAGTGTAAGTGGTGTGACACAGCAGGAGGCCTCTGTTTGGCCTCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073279.13
ENSMUST00000110849.10
ENSMUST00000192158.6
3UTR-3UTR GCA 90 bp GTTTGCCTTGTTTGGATCAGTCAGATGAGCACTGGTACAATGATAGGTGAGCCTATGAACCGAGCCTGCTaGTGGAGTGGAGGAGGTTGT +
Preference number: 2 (lower is better)
Translates to: VCLVWISQMSTGTMIGEPMNRAC*WSGGGC
Trigger: ACAACCTCCTCCACTCCAGCAGCAGGCTCGGTTCAT...AGGCTCACCTATCATTGTACCAGTGCTCATCTGACTGATCCAAACAAGGCAAAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000192158.6
ENSMUST00000192222.6
3UTR-3UTR GCA 90 bp CAGGCAGTGTTGGACGAAGAAGTGGTGGAGGCTGGTTCAGAGTGGCAATGGGGATCAATGTTGTGTTTATaGCAGAACAACATGCCAAGC +
Preference number: 2 (lower is better)
Translates to: QAVLDEEVVEAGSEWQWGSMLCL*QNNMPS
Trigger: GCTTGGCATGTTGTTCTGGCATAAACACAACATTGA...TCCCCATTGCCACTCTGAACCAGCCTCCACCACTTCTTCGTCCAACACTGCCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000192158.6
3UTR-3UTR CCA 90 bp CATCCCTCAGATACAGCACCTAAGCCACAGATACTGAACATCTGGACAGATGCTCCCATGAGATCACAGTaGGCACTAGAAAGGAGGCCA +
Preference number: 2 (lower is better)
Translates to: HPSDTAPKPQILNIWTDAPMRSQ*ALERRP
Trigger: TGGCCTCCTTTCTAGTGCCCACTGTGATCTCATGGG...AGCATCTGTCCAGATGTTCAGTATCTGTGGCTTAGGTGCTGTATCTGAGGGATG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073279.13
ENSMUST00000110849.10
ENSMUST00000192158.6
3UTR-3UTR CCA 90 bp GAAGGACTAGTTTGCCTTGTTTGGATCAGTCAGATGAGCACTGGTACAATGATAAACCGAGCCTGCTGCTaGAGTGGAGGAGGTTGTCGG +
Preference number: 2 (lower is better)
Translates to: EGLVCLVWISQMSTGTMINRACC*SGGGCR
Trigger: CCGACAACCTCCTCCACTCCAGCAGCAGGCTCGGTT...TATCATTGTACCAGTGCTCATCTGACTGATCCAAACAAGGCAAACTAGTCCTTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000192158.6
ENSMUST00000192222.6
3UTR-3UTR TCA 90 bp AAATCAAACCACAAGCTCAGGTTGGTTGAAAGGATCATACAAATGTATTCAGATGGAGGAGGTTGTCGGTaGAGAGCAGGGGCGGCAGGC +
Preference number: 2 (lower is better)
Translates to: KSNHKLRLVERIIQMYSDGGGCR*RAGAAG
Trigger: GCCTGCCGCCCCTGCTCTTCACCGACAACCTCCTCC...ATCTGAATACATTTGTATGATCCTTTCAACCAACCTGAGCTTGTGGTTTGATTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000192158.6
3UTR-3UTR CCA 90 bp TTGTGGGTGCTAATGACTTTGCATTGGAATAAAAAGGCCTTAAGCCTCTGTTTCTGGTGTTGGCTGCGTTaGGGCTGCAGGAGACAGCCA +
Preference number: 2 (lower is better)
Translates to: LWVLMTLHWNKKALSLCFWCWLR*GCRRQP
Trigger: TGGCTGTCTCCTGCAGCCCCAACGCAGCCAACACCA...GAAACAGAGGCTTAAGGCCTTTTTATTCCAATGCAAAGTCATTAGCACCCACAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000192158.6
3UTR-3UTR TCA 90 bp GGTGAGCCTTTGTCCAGCGTAATTAGTGCAGTGAAGGCTGTGAATCTGTCTGAAGGCTGTGAATCTGTCTaGATCCCAATGAGTGAAGGT +
Preference number: 2 (lower is better)
Translates to: GEPLSSVISAVKAVNLSEGCESV*IPMSEG
Trigger: ACCTTCACTCATTGGGATTCAGACAGATTCACAGCC...TTCAGACAGATTCACAGCCTTCACTGCACTAATTACGCTGGACAAAGGCTCACC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110849.10
ENSMUST00000192158.6
ENSMUST00000192222.6
3UTR-3UTR TCA 90 bp AGCTCAGGTTGGTTGAAAGGATCATACAAATGTATTCAGATGTTCAACAGAGATGTGGAGGAGGCTGATTaGGAGTTGGCCGGGGCTGGA +
Preference number: 2 (lower is better)
Translates to: SSGWLKGSYKCIQMFNRDVEEAD*ELAGAG
Trigger: TCCAGCCCCGGCCAACTCTCAATCAGCCTCCTCCAC...ATCTCTGTTGAACATCTGAATACATTTGTATGATCCTTTCAACCAACCTGAGCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000192158.6
3UTR-3UTR GCA 90 bp CCTTTGTCCAGCGTAATTAGTGCAGTGAAGGCTGTGAATCTGTCTGAATCCCAACAAACAGAGGCCTCCTaGTGTGTCACACCACTTACA +
Preference number: 2 (lower is better)
Translates to: PLSSVISAVKAVNLSESQQTEAS*CVTPLT
Trigger: TGTAAGTGGTGTGACACAGCAGGAGGCCTCTGTTTG...TTGGGATTCAGACAGATTCACAGCCTTCACTGCACTAATTACGCTGGACAAAGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110849.10
ENSMUST00000192158.6
ENSMUST00000192222.6
3UTR-3UTR CCA 90 bp GGTGAGCCTTTGTCCAGCGTAATTAGTGCAGTGAAGGCTGTGAATCTGTCTGAAGCTAGTTTACGAGCCTaGCGATCCATCAAACTTGTC +
Preference number: 2 (lower is better)
Translates to: GEPLSSVISAVKAVNLSEASLRA*RSIKLV
Trigger: GACAAGTTTGATGGATCGCCAGGCTCGTAAACTAGC...TTCAGACAGATTCACAGCCTTCACTGCACTAATTACGCTGGACAAAGGCTCACC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000192158.6
3UTR-3UTR CCA 90 bp TCTTTGTGGGTGCTAATGACTTTGCATTGGAATAAAAAGGCCTTAAGCCTCTGTTGGACGAAGAAGTGGTaGAGGCTGGTTCAGAGTGGC +
Preference number: 2 (lower is better)
Translates to: SLWVLMTLHWNKKALSLCWTKKW*RLVQSG
Trigger: GCCACTCTGAACCAGCCTCCACCACTTCTTCGTCCA...ACAGAGGCTTAAGGCCTTTTTATTCCAATGCAAAGTCATTAGCACCCACAAAGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000192158.6
3UTR-3UTR CCA 90 bp ACTTTGCATTGGAATAAAAAGGCCTTAAGCCTCTGTTTCTTCATAAAAACGATCGCCTCAGGATGGTGTTaGCTGCGTTGGGGCTGCAGG +
Preference number: 2 (lower is better)
Translates to: TLHWNKKALSLCFFIKTIASGWC*LRWGCR
Trigger: CCTGCAGCCCCAACGCAGCCAACACCATCCTGAGGC...GATCGTTTTTATGAAGAAACAGAGGCTTAAGGCCTTTTTATTCCAATGCAAAGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000192158.6
3UTR-3UTR TCA 90 bp AGGACTAGTTTGCCTTGTTTGGATCAGTCAGATGAGCACTGGTACAATGATAGGTCCGCTACATCACACTaGAGTCTAAAGCCACACCAT +
Preference number: 2 (lower is better)
Translates to: RTSLPCLDQSDEHWYNDRSATSH*SLKPHH
Trigger: ATGGTGTGGCTTTAGACTTCAGTGTGATGTAGCGGA...CCTATCATTGTACCAGTGCTCATCTGACTGATCCAAACAAGGCAAACTAGTCCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000192158.6
3UTR-3UTR GCA 90 bp GAAGGACTAGTTTGCCTTGTTTGGATCAGTCAGATGAGCACTGGTACAATGATACAAACAGAGGCCTCCTaGTGTGTCACACCACTTACA +
Preference number: 2 (lower is better)
Translates to: EGLVCLVWISQMSTGTMIQTEAS*CVTPLT
Trigger: TGTAAGTGGTGTGACACAGCAGGAGGCCTCTGTTTG...TATCATTGTACCAGTGCTCATCTGACTGATCCAAACAAGGCAAACTAGTCCTTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000073279.13
ENSMUST00000110849.10
ENSMUST00000192158.6
ENSMUST00000192222.6
3UTR-3UTR GCA 90 bp ACATCTCCCACAGACTGTACTGCAGGTCTACTGACGAGAGACAAGACGATGAAACTCTACAGCAAGCCATaGTTCCCATATGAAGTCATT +
Preference number: 2 (lower is better)
Translates to: TSPTDCTAGLLTRDKTMKLYSKP*FPYEVI
Trigger: AATGACTTCATATGGGAAGCATGGCTTGCTGTAGAG...TTTCATCGTCTTGTCTCTCGTCAGTAGACCTGCAGTACAGTCTGTGGGAGATGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073279.13
ENSMUST00000110849.10
ENSMUST00000192158.6
3UTR-3UTR GCA 90 bp AGACTGTACTGCAGGTCTACTGACGAGAGACAAGACGATGAAAGCTGTCACGGTAAAAAGGGCCTTTTCTaGAAGCCACTTTCAATCACA +
Preference number: 2 (lower is better)
Translates to: RLYCRSTDERQDDESCHGKKGLF*KPLSIT
Trigger: TGTGATTGAAAGTGGCTTGCAGAAAAGGCCCTTTTT...ACCGTGACAGCTTTCATCGTCTTGTCTCTCGTCAGTAGACCTGCAGTACAGTCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000073279.13
ENSMUST00000110849.10
ENSMUST00000192158.6
3UTR-3UTR CCA 90 bp ACTTTGCATTGGAATAAAAAGGCCTTAAGCCTCTGTTTCTTCATAAAAACGATCAACCGAGCCTGCTGCTaGAGTGGAGGAGGTTGTCGG +
Preference number: 2 (lower is better)
Translates to: TLHWNKKALSLCFFIKTINRACC*SGGGCR
Trigger: CCGACAACCTCCTCCACTCCAGCAGCAGGCTCGGTT...GATCGTTTTTATGAAGAAACAGAGGCTTAAGGCCTTTTTATTCCAATGCAAAGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000192158.6
3UTR-3UTR CCA 90 bp GGACTAGTTTGCCTTGTTTGGATCAGTCAGATGAGCACTGGTACAATGATAGGTCCTGATTGTGTCTATTaGCTAGTTTACGAGCCTGGC +
Preference number: 2 (lower is better)
Translates to: GLVCLVWISQMSTGTMIGPDCVY*LVYEPG
Trigger: GCCAGGCTCGTAAACTAGCCAATAGACACAATCAGG...ACCTATCATTGTACCAGTGCTCATCTGACTGATCCAAACAAGGCAAACTAGTCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000192158.6
3UTR-3UTR GCA 90 bp AGACTGTACTGCAGGTCTACTGACGAGAGACAAGACGATGAAAGCTGTCACGGTTTTAAACAAGGACTTTaGACTAGGACCCCAAACTAT +
Preference number: 2 (lower is better)
Translates to: RLYCRSTDERQDDESCHGFKQGL*TRTPNY
Trigger: ATAGTTTGGGGTCCTAGTGCAAAGTCCTTGTTTAAA...ACCGTGACAGCTTTCATCGTCTTGTCTCTCGTCAGTAGACCTGCAGTACAGTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000073279.13
ENSMUST00000110849.10
ENSMUST00000192158.6
3UTR-3UTR GCA 90 bp GAAGGACTAGTTTGCCTTGTTTGGATCAGTCAGATGAGCACTGGTACAATGATATATGCCAGAACAACATaGCAAGCGCCTGTTCAACAT +
Preference number: 2 (lower is better)
Translates to: EGLVCLVWISQMSTGTMIYARTT*QAPVQH
Trigger: ATGTTGAACAGGCGCTTGGCATGTTGTTCTGGCATA...TATCATTGTACCAGTGCTCATCTGACTGATCCAAACAAGGCAAACTAGTCCTTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000192158.6
3UTR-3UTR CCA 90 bp AAAACCAAACCAAACCAAACACTCTTTGTATCAAACACAGATCCTCTTAGTGAGCCCATGAGATCACAGTaGGCACTAGAAAGGAGGCCA +
Preference number: 2 (lower is better)
Translates to: KTKPNQTLFVSNTDPLSEPMRSQ*ALERRP
Trigger: TGGCCTCCTTTCTAGTGCCCACTGTGATCTCATGGG...CTCACTAAGAGGATCTGTGTTTGATACAAAGAGTGTTTGGTTTGGTTTGGTTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073279.13
ENSMUST00000110849.10
ENSMUST00000192158.6
3UTR-3UTR CCA 90 bp AAATCAAACCACAAGCTCAGGTTGGTTGAAAGGATCATACAAATGTATTCAGATGAGGCTGGTTCAGAGTaGCAATGGGGACTGTTGGTG +
Preference number: 2 (lower is better)
Translates to: KSNHKLRLVERIIQMYSDEAGSE*QWGLLV
Trigger: CACCAACAGTCCCCATTGCCACTCTGAACCAGCCTC...ATCTGAATACATTTGTATGATCCTTTCAACCAACCTGAGCTTGTGGTTTGATTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000192158.6
3UTR-3UTR CCA 90 bp CATCCCTCAGATACAGCACCTAAGCCACAGATACTGAACATCTGGACAGATGCTTGCAATTGTCTTATCTaGAAGCATTTGCTGAATCCT +
Preference number: 2 (lower is better)
Translates to: HPSDTAPKPQILNIWTDACNCLI*KHLLNP
Trigger: AGGATTCAGCAAATGCTTCCAGATAAGACAATTGCA...AGCATCTGTCCAGATGTTCAGTATCTGTGGCTTAGGTGCTGTATCTGAGGGATG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000192158.6
3UTR-3UTR CCA 90 bp AAATCAAACCACAAGCTCAGGTTGGTTGAAAGGATCATACAAATGTATTCAGATGCCACCACGTCCTCCTaGGTTAGATACATGCCCTTA +
Preference number: 2 (lower is better)
Translates to: KSNHKLRLVERIIQMYSDATTSS*VRYMPL
Trigger: TAAGGGCATGTATCTAACCCAGGAGGACGTGGTGGC...ATCTGAATACATTTGTATGATCCTTTCAACCAACCTGAGCTTGTGGTTTGATTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000192158.6
3UTR-3UTR GCA 90 bp GAAGGACTAGTTTGCCTTGTTTGGATCAGTCAGATGAGCACTGGTACAATGATAGCAGGCTATTTATCTTaGACTCCTAACATAGGAAAG +
Preference number: 2 (lower is better)
Translates to: EGLVCLVWISQMSTGTMIAGYLS*TPNIGK
Trigger: CTTTCCTATGTTAGGAGTGCAAGATAAATAGCCTGC...TATCATTGTACCAGTGCTCATCTGACTGATCCAAACAAGGCAAACTAGTCCTTC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073279.13
ENSMUST00000110849.10
ENSMUST00000192158.6
3UTR-3UTR TCA 90 bp CTAAATCAAACCACAAGCTCAGGTTGGTTGAAAGGATCATACAAATGTATTCAGATTGCAACAACACAATaGGCTCATCTTGTGATGCCG +
Preference number: 2 (lower is better)
Translates to: LNQTTSSGWLKGSYKCIQIATTQ*AHLVMP
Trigger: CGGCATCACAAGATGAGCTCATTGTGTTGTTGCAAT...CTGAATACATTTGTATGATCCTTTCAACCAACCTGAGCTTGTGGTTTGATTTAG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073279.13
ENSMUST00000110849.10
ENSMUST00000192158.6
3UTR CAA 90 bp GATGCCGATGACTTAGCCCTAAATCAAACCACAAGCTCAGGTTGGTaGAAAGGATCATACAAATGTATTCAGATGTTCAACAGAGATTTA +
Preference number: 2 (lower is better)
Translates to: DADDLALNQTTSSGW*KGSYKCIQMFNRDL
Trigger: TAAATCTCTGTTGAACATCTGAATACATTTGTATGATCCTTTCAACCAACCTGAGCTTGTGGTTTGATTTAGGGCTAAGTCATCGGCATC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073279.13
ENSMUST00000110849.10
ENSMUST00000192158.6
3UTR-3UTR GCA 90 bp TCTTTGTGGGTGCTAATGACTTTGCATTGGAATAAAAAGGCCTTAAGCCTCTGTCATTTTCTGCTTAAGTaGACTGTTTACTTGCTTAGC +
Preference number: 2 (lower is better)
Translates to: SLWVLMTLHWNKKALSLCHFLLK*TVYLLS
Trigger: GCTAAGCAAGTAAACAGTGCACTTAAGCAGAAAATG...ACAGAGGCTTAAGGCCTTTTTATTCCAATGCAAAGTCATTAGCACCCACAAAGA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000192158.6
3UTR-3UTR TCA 90 bp AGCTCAGGTTGGTTGAAAGGATCATACAAATGTATTCAGATGTTCAACAGAGATTCCTTTTTCTGCATGTaGGTGATTCCAAACCTCTAT +
Preference number: 2 (lower is better)
Translates to: SSGWLKGSYKCIQMFNRDSFFCM*VIPNLY
Trigger: ATAGAGGTTTGGAATCACTCACATGCAGAAAAAGGA...ATCTCTGTTGAACATCTGAATACATTTGTATGATCCTTTCAACCAACCTGAGCT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000073279.13
ENSMUST00000110849.10
ENSMUST00000192158.6
3UTR-3UTR TCA 90 bp ACTTTGCATTGGAATAAAAAGGCCTTAAGCCTCTGTTTCTTCATAAAAACGATCTCCTTTTTCTGCATGTaGGTGATTCCAAACCTCTAT +
Preference number: 2 (lower is better)
Translates to: TLHWNKKALSLCFFIKTISFFCM*VIPNLY
Trigger: ATAGAGGTTTGGAATCACTCACATGCAGAAAAAGGA...GATCGTTTTTATGAAGAAACAGAGGCTTAAGGCCTTTTTATTCCAATGCAAAGT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt.
Matches the following 3 transcripts:
ENSMUST00000073279.13
ENSMUST00000110849.10
ENSMUST00000192158.6
3UTR-3UTR TCA 90 bp AAATCAAACCACAAGCTCAGGTTGGTTGAAAGGATCATACAAATGTATTCAGATCAAGCTCAGGTTGGTTaGAAGGATCATACAAATGTA +
Preference number: 2 (lower is better)
Translates to: KSNHKLRLVERIIQMYSDQAQVG*KDHTNV
Trigger: TACATTTGTATGATCCTTTCAACCAACCTGAGCTTG...ATCTGAATACATTTGTATGATCCTTTCAACCAACCTGAGCTTGTGGTTTGATTT
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073279.13
ENSMUST00000110849.10
ENSMUST00000192158.6
3UTR-3UTR TCA 90 bp AAATCAAACCACAAGCTCAGGTTGGTTGAAAGGATCATACAAATGTATTCAGATTTTTCTGCATGTGAGTaGTTCCAAACCTCTATTACT +
Preference number: 2 (lower is better)
Translates to: KSNHKLRLVERIIQMYSDFSACE*FQTSIT
Trigger: AGTAATAGAGGTTTGGAATCACTCACATGCAGAAAA...ATCTGAATACATTTGTATGATCCTTTCAACCAACCTGAGCTTGTGGTTTGATTT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000073279.13
ENSMUST00000110849.10
ENSMUST00000192158.6
3UTR-3UTR GCA 90 bp AAATCAAACCACAAGCTCAGGTTGGTTGAAAGGATCATACAAATGTATTCAGATTTTAAACAAGGACTTTaGACTAGGACCCCAAACTAT +
Preference number: 2 (lower is better)
Translates to: KSNHKLRLVERIIQMYSDFKQGL*TRTPNY
Trigger: ATAGTTTGGGGTCCTAGTGCAAAGTCCTTGTTTAAA...ATCTGAATACATTTGTATGATCCTTTCAACCAACCTGAGCTTGTGGTTTGATTT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000073279.13
ENSMUST00000110849.10
ENSMUST00000192158.6
3UTR CCA 72 bp CCATGTCCAGTTGCCTCAGGATGGTGTTGGCTGCGTTaGGGCTGCAGGAGACAGCCACCACGTCCTCCTGGG +
Preference number: 3 (lower is better)
Translates to: PCPVASGWCWLR*GCRRQPPRPPG
Trigger: CCCAGGAGGACGTGGTGGCTGTCTCCTGCAGCCCCAACGCAGCCAACACCATCCTGAGGCAACTGGACATGG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000192158.6
3UTR GCA 72 bp GCAGACTCTGGTACTCTCTCCGGCCCAGGCCGATCTTaGTGGTTTGGACCGGCTGGTCAGCGTTACCCTCTC +
Preference number: 3 (lower is better)
Translates to: ADSGTLSGPGRS*WFGPAGQRYPL
Trigger: GAGAGGGTAACGCTGACCAGCCGGTCCAAACCAGCAAGATCGGCCTGGGCCGGAGAGAGTACCAGAGTCTGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000192158.6
3UTR GCA 72 bp CAGCTCCATGTCCAGTTGCCTCAGGATGGTGTTGGCTaGGTTGGGGCTGCAGGAGACAGCCACCACGTCCTC +
Preference number: 3 (lower is better)
Translates to: QLHVQLPQDGVG*VGAAGDSHHVL
Trigger: GAGGACGTGGTGGCTGTCTCCTGCAGCCCCAACGCAGCCAACACCATCCTGAGGCAACTGGACATGGAGCTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000192158.6
3UTR CCA 72 bp GCGTTGGGGCTGCAGGAGACAGCCACCACGTCCTCCTaGGTTAGATACATGCCCTTAGGAGGGCGGCACTTG +
Preference number: 3 (lower is better)
Translates to: ALGLQETATTSS*VRYMPLGGRHL
Trigger: CAAGTGCCGCCCTCCTAAGGGCATGTATCTAACCCAGGAGGACGTGGTGGCTGTCTCCTGCAGCCCCAACGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000192158.6
3UTR GCA 72 bp CCAGTTGCCTCAGGATGGTGTTGGCTGCGTTGGGGCTaGAGGAGACAGCCACCACGTCCTCCTGGGTTAGAT +
Preference number: 3 (lower is better)
Translates to: PVASGWCWLRWG*RRQPPRPPGLD
Trigger: ATCTAACCCAGGAGGACGTGGTGGCTGTCTCCTGCAGCCCCAACGCAGCCAACACCATCCTGAGGCAACTGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000192158.6
3UTR CCA 72 bp AGGTTGTCGGTGAAGAGCAGGGGCGGCAGGCAGTGTTaGACGAAGAAGTGGTGGAGGCTGGTTCAGAGTGGC +
Preference number: 3 (lower is better)
Translates to: RLSVKSRGGRQC*TKKWWRLVQSG
Trigger: GCCACTCTGAACCAGCCTCCACCACTTCTTCGTCCAACACTGCCTGCCGCCCCTGCTCTTCACCGACAACCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000192158.6
ENSMUST00000192222.6
3UTR GCA 72 bp ACCTGGCGCTTGAGAGAGATCAGCTCCATGTCCAGTTaGCTCAGGATGGTGTTGGCTGCGTTGGGGCTGCAG +
Preference number: 3 (lower is better)
Translates to: TWRLREISSMSS*LRMVLAALGLQ
Trigger: CTGCAGCCCCAACGCAGCCAACACCATCCTGAGGCAACTGGACATGGAGCTGATCTCTCTCAAGCGCCAGGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000192158.6
3UTR CCA 72 bp AAGAGCAGGGGCGGCAGGCAGTGTTGGACGAAGAAGTaGTGGAGGCTGGTTCAGAGTGGCAATGGGGACTGT +
Preference number: 3 (lower is better)
Translates to: KSRGGRQCWTKK*WRLVQSGNGDC
Trigger: ACAGTCCCCATTGCCACTCTGAACCAGCCTCCACCACTTCTTCGTCCAACACTGCCTGCCGCCCCTGCTCTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000192158.6
ENSMUST00000192222.6
3UTR CCA 72 bp TGGTACTCTCTCCGGCCCAGGCCGATCTTGCTGGTTTaGACCGGCTGGTCAGCGTTACCCTCTCTTTTGGCT +
Preference number: 3 (lower is better)
Translates to: WYSLRPRPILLV*TGWSALPSLLA
Trigger: AGCCAAAAGAGAGGGTAACGCTGACCAGCCGGTCCAAACCAGCAAGATCGGCCTGGGCCGGAGAGAGTACCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000192158.6
3UTR CCA 72 bp GACTCTGGTACTCTCTCCGGCCCAGGCCGATCTTGCTaGTTTGGACCGGCTGGTCAGCGTTACCCTCTCTTT +
Preference number: 3 (lower is better)
Translates to: DSGTLSGPGRSC*FGPAGQRYPLF
Trigger: AAAGAGAGGGTAACGCTGACCAGCCGGTCCAAACCAGCAAGATCGGCCTGGGCCGGAGAGAGTACCAGAGTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000192158.6
3UTR CCA 72 bp AGATCAGCTCCATGTCCAGTTGCCTCAGGATGGTGTTaGCTGCGTTGGGGCTGCAGGAGACAGCCACCACGT +
Preference number: 3 (lower is better)
Translates to: RSAPCPVASGWC*LRWGCRRQPPR
Trigger: ACGTGGTGGCTGTCTCCTGCAGCCCCAACGCAGCCAACACCATCCTGAGGCAACTGGACATGGAGCTGATCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000192158.6
3UTR-3UTR CAA 90 bp GGCCAAACAGAGGCCTCCTGCTGTGTCACACCACTTACACTAGTCCACCGCCACTGGGGACTGTTGGTGTaGGAGTGGATGATGGGGCAG +
Preference number: 3 (lower is better)
Translates to: GQTEASCCVTPLTLVHRHWGLLV*EWMMGQ
Trigger: CTGCCCCATCATCCACTCCAACACCAACAGTCCCCA...GTGGCGGTGGACTAGTGTAAGTGGTGTGACACAGCAGGAGGCCTCTGTTTGGCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000192158.6
ENSMUST00000192222.6
3UTR TCA 72 bp GGTCTGTGCCTCCGCTTCTTCGTCAGTGCTCTTCCCTaGCGGCACCTTAGAAGCACTTTGTGTCTCCTCCCC +
Preference number: 3 (lower is better)
Translates to: GLCLRFFVSALP*RHLRSTLCLLP
Trigger: GGGGAGGAGACACAAAGTGCTTCTAAGGTGCCGTCAGGGAAGAGCACTGACGAAGAAGCGGAGGCACAGACC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000192222.6
3UTR CCA 72 bp GCGGCAGGCAGTGTTGGACGAAGAAGTGGTGGAGGCTaGTTCAGAGTGGCAATGGGGACTGTTGGTGTTGGA +
Preference number: 3 (lower is better)
Translates to: AAGSVGRRSGGG*FRVAMGTVGVG
Trigger: TCCAACACCAACAGTCCCCATTGCCACTCTGAACCAGCCTCCACCACTTCTTCGTCCAACACTGCCTGCCGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000192158.6
ENSMUST00000192222.6
3UTR CCA 72 bp CTCCGGCCCAGGCCGATCTTGCTGGTTTGGACCGGCTaGTCAGCGTTACCCTCTCTTTTGGCTTCTTTCTTT +
Preference number: 3 (lower is better)
Translates to: LRPRPILLVWTG*SALPSLLASFF
Trigger: AAAGAAAGAAGCCAAAAGAGAGGGTAACGCTGACCAGCCGGTCCAAACCAGCAAGATCGGCCTGGGCCGGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000192158.6
3UTR-3UTR CAA 90 bp CCAAACAGAGGCCTCCTGCTGTGTCACACCACTTACACTAGTCCACCGCCACACTGGCAATGGGGACTGTaGGTGTTGGAGTGGATGATG +
Preference number: 3 (lower is better)
Translates to: PNRGLLLCHTTYTSPPPHWQWGL*VLEWMM
Trigger: CATCATCCACTCCAACACCAACAGTCCCCATTGCCA...GTGTGGCGGTGGACTAGTGTAAGTGGTGTGACACAGCAGGAGGCCTCTGTTTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000192158.6
ENSMUST00000192222.6
3UTR TCA 72 bp CAAACACACCTCCGCTTCTTCGTCAGTGCTCTTCCCTaGCGGCACCTTAGAAGCACTTTGTGTCTCCTCCCC +
Preference number: 3 (lower is better)
Translates to: QTHLRFFVSALP*RHLRSTLCLLP
Trigger: GGGGAGGAGACACAAAGTGCTTCTAAGGTGCCGTCAGGGAAGAGCACTGACGAAGAAGCGGAGGTGTGTTTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000192491.6
3UTR-3UTR CAA 90 bp CCAAACAGAGGCCTCCTGCTGTGTCACACCACTTACACTAGTCCACCGCCACACGCGTTACCCTCTCTTTaGGCTTCTTTCTTTGGGTCG +
Preference number: 3 (lower is better)
Translates to: PNRGLLLCHTTYTSPPPHALPSL*ASFFGS
Trigger: CGACCCAAAGAAAGAAGCCAAAAGAGAGGGTAACGC...GTGTGGCGGTGGACTAGTGTAAGTGGTGTGACACAGCAGGAGGCCTCTGTTTGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000192158.6
3UTR TCA 72 bp AGTGCAGTGAAGGCTGTGAATCTGTCTGAATCCCAATaGGTGAAGGTGGCTGCTGACCGCCAACCGTGGTCA +
Preference number: 3 (lower is better)
Translates to: SAVKAVNLSESQ*VKVAADRQPWS
Trigger: TGACCACGGTTGGCGGTCAGCAGCCACCTTCACTCATTGGGATTCAGACAGATTCACAGCCTTCACTGCACT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110849.10
ENSMUST00000192158.6
ENSMUST00000192222.6
3UTR-3UTR CAA 90 bp CGGCAGGCAGTGTTGGACGAAGAAGTGGTGGAGGCTGGTTCAGAGTGGCAATGGACTAGTTTGCCTTGTTaGGATCAGTCAGATGAGCAC +
Preference number: 3 (lower is better)
Translates to: RQAVLDEEVVEAGSEWQWTSLPC*DQSDEH
Trigger: GTGCTCATCTGACTGATCCAAACAAGGCAAACTAGT...CCATTGCCACTCTGAACCAGCCTCCACCACTTCTTCGTCCAACACTGCCTGCCG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000192158.6
ENSMUST00000192222.6
3UTR-3UTR CAA 90 bp TGGCTGCGTTGGGGCTGCAGGAGACAGCCACCACGTCCTCCTGGGTTAGATACAAGGGACTTCTCAATGTaGTGTTTATGCCAGAACAAC +
Preference number: 3 (lower is better)
Translates to: WLRWGCRRQPPRPPGLDTRDFSM*CLCQNN
Trigger: GTTGTTCTGGCATAAACACAACATTGAGAAGTCCCT...TGTATCTAACCCAGGAGGACGTGGTGGCTGTCTCCTGCAGCCCCAACGCAGCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000192158.6
3UTR TCA 72 bp TTCGCTCTGCTAGGACCAGAAGCTGGCATGTCCTTATaGCTAAGCAGTCAGAGACGCCTCACGAGGAAGTGT +
Preference number: 3 (lower is better)
Translates to: FALLGPEAGMSL*LSSQRRLTRKC
Trigger: ACACTTCCTCGTGAGGCGTCTCTGACTGCTTAGTCATAAGGACATGCCAGCTTCTGGTCCTAGCAGAGCGAA
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000192128.6
ENSMUST00000192491.6
3UTR-3UTR CAA 90 bp CCAACCGTGGTCAACACTGGTCTTGGGTTTAGGCGGGGTGGCATGGAGTTAGCAATGATAGGTGAGCCTTaGTCCAGCGTAATTAGTGCA +
Preference number: 3 (lower is better)
Translates to: PTVVNTGLGFRRGGMELAMIGEP*SSVISA
Trigger: TGCACTAATTACGCTGGACAAAGGCTCACCTATCAT...TGCTAACTCCATGCCACCCCGCCTAAACCCAAGACCAGTGTTGACCACGGTTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000192158.6
ENSMUST00000192222.6
3UTR-3UTR CAA 90 bp CAGAAGGGCGGGGCGGCTCCTCAGCTCAGATTAGCTCAGATTCCAGACACAAACAAAGAAGTTCTTCACTaGGCCAACAGTCTTGTTGCC +
Preference number: 3 (lower is better)
Translates to: QKGGAAPQLRLAQIPDTNKEVLH*ANSLVA
Trigger: GGCAACAAGACTGTTGGCCAAGTGAAGAACTTCTTT...GTTTGTGTCTGGAATCTGAGCTAATCTGAGCTGAGGAGCCGCCCCGCCCTTCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000192491.6
3UTR-3UTR CAA 90 bp AGGACTAGTTTGCCTTGTTTGGATCAGTCAGATGAGCACTGGTACAATGATAGGGGGCGGCAGGCAGTGTaGGACGAAGAAGTGGTGGAG +
Preference number: 3 (lower is better)
Translates to: RTSLPCLDQSDEHWYNDRGRQAV*DEEVVE
Trigger: CTCCACCACTTCTTCGTCCAACACTGCCTGCCGCCC...CCTATCATTGTACCAGTGCTCATCTGACTGATCCAAACAAGGCAAACTAGTCCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000192158.6
ENSMUST00000192222.6
3UTR-3UTR CAA 90 bp GGAGGCCAAACAGAGGCCTCCTGCTGTGTCACACCACTTACACTAGTCCACCGCCAAACCAAACACTCTTaGTATCAAACACAGATCCTC +
Preference number: 3 (lower is better)
Translates to: GGQTEASCCVTPLTLVHRQTKHS*YQTQIL
Trigger: GAGGATCTGTGTTTGATACAAAGAGTGTTTGGTTTG...GCGGTGGACTAGTGTAAGTGGTGTGACACAGCAGGAGGCCTCTGTTTGGCCTCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073279.13
ENSMUST00000110849.10
ENSMUST00000192158.6
3UTR-3UTR CAA 90 bp GGAGGCCAAACAGAGGCCTCCTGCTGTGTCACACCACTTACACTAGTCCACCGCACAAGCTCAGGTTGGTaGAAAGGATCATACAAATGT +
Preference number: 3 (lower is better)
Translates to: GGQTEASCCVTPLTLVHRTSSGW*KGSYKC
Trigger: ACATTTGTATGATCCTTTCAACCAACCTGAGCTTGT...GCGGTGGACTAGTGTAAGTGGTGTGACACAGCAGGAGGCCTCTGTTTGGCCTCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073279.13
ENSMUST00000110849.10
ENSMUST00000192158.6
3UTR CCA 72 bp TCCTCCCCTAAAGCAGAAGCATCAGCATTAGAAGCCTaGGTTCCTTGTTCTGCTTCCCACTCCTGCAATACC +
Preference number: 3 (lower is better)
Translates to: SSPKAEASALEA*VPCSASHSCNT
Trigger: GGTATTGCAGGAGTGGGAAGCAGAACAAGGAACCCAGGCTTCTAATGCTGATGCTTCTGCTTTAGGGGAGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000192222.6
ENSMUST00000192491.6
3UTR CCA 72 bp TGGTTTGGACCGGCTGGTCAGCGTTACCCTCTCTTTTaGCTTCTTTCTTTGGGTCGTAGTCACTGTCGTTTC +
Preference number: 3 (lower is better)
Translates to: WFGPAGQRYPLF*LLSLGRSHCRF
Trigger: GAAACGACAGTGACTACGACCCAAAGAAAGAAGCCAAAAGAGAGGGTAACGCTGACCAGCCGGTCCAAACCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000192158.6
3UTR-3UTR CAA 90 bp TGGCATGGAGTTAGCAGGGCGAATGAGAGGTGGAGGAGGCTGATTGAGAGTTGGCTTATCTGGAAGCATTaGCTGAATCCTGTGAAAGCT +
Preference number: 3 (lower is better)
Translates to: WHGVSRANERWRRLIESWLIWKH*LNPVKA
Trigger: AGCTTTCACAGGATTCAGCAAATGCTTCCAGATAAG...CCAACTCTCAATCAGCCTCCTCCACCTCTCATTCGCCCTGCTAACTCCATGCCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000192158.6
3UTR GCA 72 bp GGGAGGTCCGCAAGGGACTTCTCAATGTTGTGTTTATaGCAGAACAACATGCCAAGCGCCTGTTCAACATTG +
Preference number: 3 (lower is better)
Translates to: GRSARDFSMLCL*QNNMPSACSTL
Trigger: CAATGTTGAACAGGCGCTTGGCATGTTGTTCTGGCATAAACACAACATTGAGAAGTCCCTTGCGGACCTCCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000192158.6
3UTR CCA 72 bp AGACCCCCGCCACAGGAAGGACTAGTTTGCCTTGTTTaGATCAGTCAGATGAGCACTGGTACAATGATAGGT +
Preference number: 3 (lower is better)
Translates to: RPPPQEGLVCLV*ISQMSTGTMIG
Trigger: ACCTATCATTGTACCAGTGCTCATCTGACTGATCCAAACAAGGCAAACTAGTCCTTCCTGTGGCGGGGGTCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000073279.13
ENSMUST00000110849.10
ENSMUST00000192158.6
ENSMUST00000192222.6
3UTR CCA 72 bp GGTAGACAGAATACTTTTCTTCCCATGAGATCACAGTaGGCACTAGAAAGGAGGCCAAACAGAGGCCTCCTG +
Preference number: 3 (lower is better)
Translates to: GRQNTFLPMRSQ*ALERRPNRGLL
Trigger: CAGGAGGCCTCTGTTTGGCCTCCTTTCTAGTGCCCACTGTGATCTCATGGGAAGAAAAGTATTCTGTCTACC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000073279.13
ENSMUST00000110849.10
ENSMUST00000192158.6
ENSMUST00000192222.6
3UTR-3UTR CAA 90 bp TTCCCTGACGGCACCTTAGAAGCACTTTGTGTCTCCTCCCCTAAAGCAGAAGCAAAAGAAGTTCTTCACTaGGCCAACAGTCTTGTTGCC +
Preference number: 3 (lower is better)
Translates to: FPDGTLEALCVSSPKAEAKEVLH*ANSLVA
Trigger: GGCAACAAGACTGTTGGCCAAGTGAAGAACTTCTTT...TGCTTCTGCTTTAGGGGAGGAGACACAAAGTGCTTCTAAGGTGCCGTCAGGGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000192222.6
ENSMUST00000192491.6
3UTR TCA 72 bp GTCCGCTACATCACACTGAAGTCTAAAGCCACACCATaGTTCAAGAAGTGCATGGTCAAGGGTCCAGAAGGT +
Preference number: 3 (lower is better)
Translates to: VRYITLKSKATP*FKKCMVKGPEG
Trigger: ACCTTCTGGACCCTTGACCATGCACTTCTTGAATCATGGTGTGGCTTTAGACTTCAGTGTGATGTAGCGGAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000192158.6
3UTR-3UTR CAA 90 bp ACTTTTCTTCCCATGAGATCACAGTGGGCACTAGAAAGGAGGCCAAACAGAGGCACTAGTTTGCCTTGTTaGGATCAGTCAGATGAGCAC +
Preference number: 3 (lower is better)
Translates to: TFLPMRSQWALERRPNRGTSLPC*DQSDEH
Trigger: GTGCTCATCTGACTGATCCAAACAAGGCAAACTAGT...GCCTCTGTTTGGCCTCCTTTCTAGTGCCCACTGTGATCTCATGGGAAGAAAAGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000073279.13
ENSMUST00000110849.10
ENSMUST00000192158.6
ENSMUST00000192222.6
3UTR-3UTR CAA 90 bp AAAACCAAACCAAACCAAACACTCTTTGTATCAAACACAGATCCTCTTAGTGAGATGGTGTTGGCTGCGTaGGGGCTGCAGGAGACAGCC +
Preference number: 3 (lower is better)
Translates to: KTKPNQTLFVSNTDPLSEMVLAA*GLQETA
Trigger: GGCTGTCTCCTGCAGCCCCAACGCAGCCAACACCAT...CTCACTAAGAGGATCTGTGTTTGATACAAAGAGTGTTTGGTTTGGTTTGGTTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000192158.6
3UTR-3UTR CAA 90 bp CATCCCTCAGATACAGCACCTAAGCCACAGATACTGAACATCTGGACAGATGCTACTAGTTTGCCTTGTTaGGATCAGTCAGATGAGCAC +
Preference number: 3 (lower is better)
Translates to: HPSDTAPKPQILNIWTDATSLPC*DQSDEH
Trigger: GTGCTCATCTGACTGATCCAAACAAGGCAAACTAGT...AGCATCTGTCCAGATGTTCAGTATCTGTGGCTTAGGTGCTGTATCTGAGGGATG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073279.13
ENSMUST00000110849.10
ENSMUST00000192158.6
3UTR CCA 72 bp CTACGTCATCATCACTGTCACCCTGATTGTGTCTATTaGCTAGTTTACGAGCCTGGCGATCCATCAAACTTG +
Preference number: 3 (lower is better)
Translates to: LRHHHCHPDCVY*LVYEPGDPSNL
Trigger: CAAGTTTGATGGATCGCCAGGCTCGTAAACTAGCCAATAGACACAATCAGGGTGACAGTGATGATGACGTAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000192158.6
3UTR CCA 72 bp GAAATAATACACTTTCGCTCTGCTAGGACCAGAAGCTaGCATGTCCTTATGACTAAGCAGTCAGAGACGCCT +
Preference number: 3 (lower is better)
Translates to: EIIHFRSARTRS*HVLMTKQSETP
Trigger: AGGCGTCTCTGACTGCTTAGTCATAAGGACATGCCAGCTTCTGGTCCTAGCAGAGCGAAAGTGTATTATTTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000192128.6
ENSMUST00000192491.6
3UTR-3UTR CAA 90 bp ACATCTCCCACAGACTGTACTGCAGGTCTACTGACGAGAGACAAGACGATGAAATGGGTGCTAATGACTTaGCATTGGAATAAAAAGGCC +
Preference number: 3 (lower is better)
Translates to: TSPTDCTAGLLTRDKTMKWVLMT*HWNKKA
Trigger: GGCCTTTTTATTCCAATGCAAAGTCATTAGCACCCA...TTTCATCGTCTTGTCTCTCGTCAGTAGACCTGCAGTACAGTCTGTGGGAGATGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000073279.13
ENSMUST00000110849.10
ENSMUST00000192158.6
3UTR-3UTR CAA 90 bp GTTTGCCTTGTTTGGATCAGTCAGATGAGCACTGGTACAATGATAGGTGAGCCTTTTTGGCTTCTTTCTTaGGGTCGTAGTCACTGTCGT +
Preference number: 3 (lower is better)
Translates to: VCLVWISQMSTGTMIGEPFWLLS*GRSHCR
Trigger: ACGACAGTGACTACGACCCAAAGAAAGAAGCCAAAA...AGGCTCACCTATCATTGTACCAGTGCTCATCTGACTGATCCAAACAAGGCAAAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000192158.6
3UTR-3UTR CAA 90 bp GGACTAGTTTGCCTTGTTTGGATCAGTCAGATGAGCACTGGTACAATGATAGGTACTAGTTTGCCTTGTTaGGATCAGTCAGATGAGCAC +
Preference number: 3 (lower is better)
Translates to: GLVCLVWISQMSTGTMIGTSLPC*DQSDEH
Trigger: GTGCTCATCTGACTGATCCAAACAAGGCAAACTAGT...ACCTATCATTGTACCAGTGCTCATCTGACTGATCCAAACAAGGCAAACTAGTCC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000073279.13
ENSMUST00000110849.10
ENSMUST00000192158.6
ENSMUST00000192222.6
3UTR-3UTR CAA 90 bp AAATCAAACCACAAGCTCAGGTTGGTTGAAAGGATCATACAAATGTATTCAGATTGGCAATGGGGACTGTaGGTGTTGGAGTGGATGATG +
Preference number: 3 (lower is better)
Translates to: KSNHKLRLVERIIQMYSDWQWGL*VLEWMM
Trigger: CATCATCCACTCCAACACCAACAGTCCCCATTGCCA...ATCTGAATACATTTGTATGATCCTTTCAACCAACCTGAGCTTGTGGTTTGATTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000192158.6
3UTR GCA 72 bp GAGAGACAAGACGATGAAAGCTGTCACGGTATAATATaGACGTACACAAGACAAGTGCTTTCAAAAATGCTC +
Preference number: 3 (lower is better)
Translates to: ERQDDESCHGII*TYTRQVLSKML
Trigger: GAGCATTTTTGAAAGCACTTGTCTTGTGTACGTGCATATTATACCGTGACAGCTTTCATCGTCTTGTCTCTC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000073279.13
ENSMUST00000110849.10
ENSMUST00000192158.6
3UTR-3UTR CAA 90 bp ACTTTGCATTGGAATAAAAAGGCCTTAAGCCTCTGTTTCTTCATAAAAACGATCCTGGTGCTGAACAACTaGACTGACATCTCCCACAGA +
Preference number: 3 (lower is better)
Translates to: TLHWNKKALSLCFFIKTILVLNN*TDISHR
Trigger: TCTGTGGGAGATGTCAGTCAAGTTGTTCAGCACCAG...GATCGTTTTTATGAAGAAACAGAGGCTTAAGGCCTTTTTATTCCAATGCAAAGT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000073279.13
ENSMUST00000110849.10
ENSMUST00000192158.6
3UTR-3UTR CAA 90 bp GAAGGACTAGTTTGCCTTGTTTGGATCAGTCAGATGAGCACTGGTACAATGATATTTGTACTAACAGTTTaGAGTATGAAGAGGCAGGAA +
Preference number: 3 (lower is better)
Translates to: EGLVCLVWISQMSTGTMIFVLTV*SMKRQE
Trigger: TTCCTGCCTCTTCATACTCAAAACTGTTAGTACAAA...TATCATTGTACCAGTGCTCATCTGACTGATCCAAACAAGGCAAACTAGTCCTTC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073279.13
ENSMUST00000110849.10
ENSMUST00000192158.6
3UTR TCA 72 bp GAAGTCATTCTATCAAAGCTGTCAGTAACACGCTGTTaGAACTCCGCCATAGTAAAATATTCTTTGTGGGTG +
Preference number: 3 (lower is better)
Translates to: EVILSKLSVTRC*NSAIVKYSLWV
Trigger: CACCCACAAAGAATATTTTACTATGGCGGAGTTTCAACAGCGTGTTACTGACAGCTTTGATAGAATGACTTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073279.13
ENSMUST00000110849.10
ENSMUST00000192158.6
3UTR-3UTR CAA 90 bp AAATCAAACCACAAGCTCAGGTTGGTTGAAAGGATCATACAAATGTATTCAGATATGATAGGTGAGCCTTaGTCCAGCGTAATTAGTGCA +
Preference number: 3 (lower is better)
Translates to: KSNHKLRLVERIIQMYSDMIGEP*SSVISA
Trigger: TGCACTAATTACGCTGGACAAAGGCTCACCTATCAT...ATCTGAATACATTTGTATGATCCTTTCAACCAACCTGAGCTTGTGGTTTGATTT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000110849.10
ENSMUST00000192158.6
3UTR-3UTR CAA 90 bp AAATCAAACCACAAGCTCAGGTTGGTTGAAAGGATCATACAAATGTATTCAGATCAAACCAAACACTCTTaGTATCAAACACAGATCCTC +
Preference number: 3 (lower is better)
Translates to: KSNHKLRLVERIIQMYSDQTKHS*YQTQIL
Trigger: GAGGATCTGTGTTTGATACAAAGAGTGTTTGGTTTG...ATCTGAATACATTTGTATGATCCTTTCAACCAACCTGAGCTTGTGGTTTGATTT
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073279.13
ENSMUST00000110849.10
ENSMUST00000192158.6
CDS-3UTR GCA 90 bp GGCCAAACAGAGGCCTCCTGCTGTGTCACACCACTTACACTAGTCCACCGCCACGCTCGTCGTCGCTGCTaGAGCCGCTCTCGGGCTCCG +
Preference number: 4 (lower is better)
Translates to: GQTEASCCVTPLTLVHRHARRRC*SRSRAP
Trigger: CGGAGCCCGAGAGCGGCTGCAGCAGCGACGACGAGC...GTGGCGGTGGACTAGTGTAAGTGGTGTGACACAGCAGGAGGCCTCTGTTTGGCC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073279.13
ENSMUST00000110849.10
ENSMUST00000192158.6
CDS-3UTR TCA 90 bp GGCCAAACAGAGGCCTCCTGCTGTGTCACACCACTTACACTAGTCCACCGCCACTTGGCCGGGGCTGGATaGACCGAGCCTGCTGCTGGA +
Preference number: 4 (lower is better)
Translates to: GQTEASCCVTPLTLVHRHLAGAG*TEPAAG
Trigger: TCCAGCAGCAGGCTCGGTTCATCCAGCCCCGGCCAA...GTGGCGGTGGACTAGTGTAAGTGGTGTGACACAGCAGGAGGCCTCTGTTTGGCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073279.13
ENSMUST00000110849.10
CDS-3UTR GCA 90 bp CCAAACAGAGGCCTCCTGCTGTGTCACACCACTTACACTAGTCCACCGCCACACTCGGGCTCCGAGAAGTaGAGCCCGCCGTTGGCCGAG +
Preference number: 4 (lower is better)
Translates to: PNRGLLLCHTTYTSPPPHSGSEK*SPPLAE
Trigger: CTCGGCCAACGGCGGGCTGCACTTCTCGGAGCCCGA...GTGTGGCGGTGGACTAGTGTAAGTGGTGTGACACAGCAGGAGGCCTCTGTTTGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073279.13
ENSMUST00000110849.10
ENSMUST00000192158.6
CDS-3UTR GCA 90 bp CCAAACAGAGGCCTCCTGCTGTGTCACACCACTTACACTAGTCCACCGCCACACCGTGCTCGTCGTCGCTaGTGCAGCCGCTCTCGGGCT +
Preference number: 4 (lower is better)
Translates to: PNRGLLLCHTTYTSPPPHRARRR*CSRSRA
Trigger: AGCCCGAGAGCGGCTGCAGCAGCGACGACGAGCACG...GTGTGGCGGTGGACTAGTGTAAGTGGTGTGACACAGCAGGAGGCCTCTGTTTGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073279.13
ENSMUST00000110849.10
ENSMUST00000192158.6
CDS-3UTR GCA 90 bp GCTGACCGCCAACCGTGGTCAACACTGGTCTTGGGTTTAGGCGGGGTGGCATGGATCCCAACATCCCCGTaGTCGTCGTCGCTGCTGCAG +
Preference number: 4 (lower is better)
Translates to: ADRQPWSTLVLGLGGVAWIPTSP*SSSLLQ
Trigger: CTGCAGCAGCGACGACGAGCACGGGGATGTTGGGAT...CCATGCCACCCCGCCTAAACCCAAGACCAGTGTTGACCACGGTTGGCGGTCAGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000110849.10
ENSMUST00000192158.6
CDS-3UTR GCA 90 bp TTAGCTAGTCCTCACACACCCTCACAGCACACCACCAGAAGGGCGGGGCGGCTCCAGGATGGTGTTGGCTaGGTTGGGGCTGCAGGAGAC +
Preference number: 4 (lower is better)
Translates to: LASPHTPSQHTTRRAGRLQDGVG*VGAAGD
Trigger: GTCTCCTGCAGCCCCAACGCAGCCAACACCATCCTG...GAGCCGCCCCGCCCTTCTGGTGGTGTGCTGTGAGGGTGTGTGAGGACTAGCTAA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000192128.6
ENSMUST00000192491.6
3UTR CAA 72 bp TCCATGTCCAGTTGCCTCAGGATGGTGTTGGCTGCGTaGGGGCTGCAGGAGACAGCCACCACGTCCTCCTGG +
Preference number: 4 (lower is better)
Translates to: SMSSCLRMVLAA*GLQETATTSSW
Trigger: CCAGGAGGACGTGGTGGCTGTCTCCTGCAGCCCCAACGCAGCCAACACCATCCTGAGGCAACTGGACATGGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000192158.6
3UTR CAA 72 bp GAGGTTGTCGGTGAAGAGCAGGGGCGGCAGGCAGTGTaGGACGAAGAAGTGGTGGAGGCTGGTTCAGAGTGG +
Preference number: 4 (lower is better)
Translates to: EVVGEEQGRQAV*DEEVVEAGSEW
Trigger: CCACTCTGAACCAGCCTCCACCACTTCTTCGTCCAACACTGCCTGCCGCCCCTGCTCTTCACCGACAACCTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000192158.6
ENSMUST00000192222.6
3UTR CAA 72 bp CTGGTACTCTCTCCGGCCCAGGCCGATCTTGCTGGTTaGGACCGGCTGGTCAGCGTTACCCTCTCTTTTGGC +
Preference number: 4 (lower is better)
Translates to: LVLSPAQADLAG*DRLVSVTLSFG
Trigger: GCCAAAAGAGAGGGTAACGCTGACCAGCCGGTCCAAACCAGCAAGATCGGCCTGGGCCGGAGAGAGTACCAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000192158.6
3UTR CAA 72 bp GAGATCAGCTCCATGTCCAGTTGCCTCAGGATGGTGTaGGCTGCGTTGGGGCTGCAGGAGACAGCCACCACG +
Preference number: 4 (lower is better)
Translates to: EISSMSSCLRMV*AALGLQETATT
Trigger: CGTGGTGGCTGTCTCCTGCAGCCCCAACGCAGCCAACACCATCCTGAGGCAACTGGACATGGAGCTGATCTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000192158.6
CDS-3UTR TCA 90 bp CCAAACAGAGGCCTCCTGCTGTGTCACACCACTTACACTAGTCCACCGCCACACGTGGAGGAGGCTGATTaGGAGTTGGCCGGGGCTGGA +
Preference number: 4 (lower is better)
Translates to: PNRGLLLCHTTYTSPPPHVEEAD*ELAGAG
Trigger: TCCAGCCCCGGCCAACTCTCAATCAGCCTCCTCCAC...GTGTGGCGGTGGACTAGTGTAAGTGGTGTGACACAGCAGGAGGCCTCTGTTTGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073279.13
ENSMUST00000110849.10
CDS-3UTR GCA 90 bp TCAGTGCTCTTCCCTGACGGCACCTTAGAAGCACTTTGTGTCTCCTCCCCTAAAGCTCGTCGTCGCTGCTaGAGCCGCTCTCGGGCTCCG +
Preference number: 4 (lower is better)
Translates to: SVLFPDGTLEALCVSSPKARRRC*SRSRAP
Trigger: CGGAGCCCGAGAGCGGCTGCAGCAGCGACGACGAGC...TTTAGGGGAGGAGACACAAAGTGCTTCTAAGGTGCCGTCAGGGAAGAGCACTGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000192491.6
CDS-3UTR CCA 90 bp GGCCAAACAGAGGCCTCCTGCTGTGTCACACCACTTACACTAGTCCACCGCCACGGCGGCAGGCAGTGTTaGACGAAGAAGTGGTGGAGG +
Preference number: 4 (lower is better)
Translates to: GQTEASCCVTPLTLVHRHGGRQC*TKKWWR
Trigger: CCTCCACCACTTCTTCGTCCAACACTGCCTGCCGCC...GTGGCGGTGGACTAGTGTAAGTGGTGTGACACAGCAGGAGGCCTCTGTTTGGCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073279.13
ENSMUST00000110849.10
CDS-3UTR GCA 90 bp CACTTTCGCTCTGCTAGGACCAGAAGCTGGCATGTCCTTATGACTAAGCAGTCAGCTCGTCGTCGCTGCTaGAGCCGCTCTCGGGCTCCG +
Preference number: 4 (lower is better)
Translates to: HFRSARTRSWHVLMTKQSARRRC*SRSRAP
Trigger: CGGAGCCCGAGAGCGGCTGCAGCAGCGACGACGAGC...TGACTGCTTAGTCATAAGGACATGCCAGCTTCTGGTCCTAGCAGAGCGAAAGTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000192128.6
ENSMUST00000192491.6
CDS-3UTR GCA 90 bp CCAAACAGAGGCCTCCTGCTGTGTCACACCACTTACACTAGTCCACCGCCACACATCCCAACATCCCCGTaGTCGTCGTCGCTGCTGCAG +
Preference number: 4 (lower is better)
Translates to: PNRGLLLCHTTYTSPPPHIPTSP*SSSLLQ
Trigger: CTGCAGCAGCGACGACGAGCACGGGGATGTTGGGAT...GTGTGGCGGTGGACTAGTGTAAGTGGTGTGACACAGCAGGAGGCCTCTGTTTGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073279.13
ENSMUST00000110849.10
ENSMUST00000192158.6
CDS-3UTR CCA 90 bp TTAGCTAGTCCTCACACACCCTCACAGCACACCACCAGAAGGGCGGGGCGGCTCGCCACCACGTCCTCCTaGGTTAGATACATGCCCTTA +
Preference number: 4 (lower is better)
Translates to: LASPHTPSQHTTRRAGRLATTSS*VRYMPL
Trigger: TAAGGGCATGTATCTAACCCAGGAGGACGTGGTGGC...GAGCCGCCCCGCCCTTCTGGTGGTGTGCTGTGAGGGTGTGTGAGGACTAGCTAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000192128.6
ENSMUST00000192491.6
CDS-3UTR CCA 90 bp ATCACAGTGGGCACTAGAAAGGAGGCCAAACAGAGGCCTCCTGCTGTGTCACACGCCTCAGGATGGTGTTaGCTGCGTTGGGGCTGCAGG +
Preference number: 4 (lower is better)
Translates to: ITVGTRKEAKQRPPAVSHASGWC*LRWGCR
Trigger: CCTGCAGCCCCAACGCAGCCAACACCATCCTGAGGC...GTGTGACACAGCAGGAGGCCTCTGTTTGGCCTCCTTTCTAGTGCCCACTGTGAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073279.13
ENSMUST00000110849.10
CDS-3UTR CCA 90 bp ATCACAGTGGGCACTAGAAAGGAGGCCAAACAGAGGCCTCCTGCTGTGTCACACAGAGTTGGCCGGGGCTaGATGAACCGAGCCTGCTGC +
Preference number: 4 (lower is better)
Translates to: ITVGTRKEAKQRPPAVSHRVGRG*MNRACC
Trigger: GCAGCAGGCTCGGTTCATCCAGCCCCGGCCAACTCT...GTGTGACACAGCAGGAGGCCTCTGTTTGGCCTCCTTTCTAGTGCCCACTGTGAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073279.13
ENSMUST00000110849.10
CDS-3UTR GCA 90 bp ACTTTTCTTCCCATGAGATCACAGTGGGCACTAGAAAGGAGGCCAAACAGAGGCTCGGGCTCCGAGAAGTaGAGCCCGCCGTTGGCCGAG +
Preference number: 4 (lower is better)
Translates to: TFLPMRSQWALERRPNRGSGSEK*SPPLAE
Trigger: CTCGGCCAACGGCGGGCTGCACTTCTCGGAGCCCGA...GCCTCTGTTTGGCCTCCTTTCTAGTGCCCACTGTGATCTCATGGGAAGAAAAGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073279.13
ENSMUST00000110849.10
ENSMUST00000192158.6
CDS-3UTR GCA 90 bp GTCTCCTCCCCTAAAGCAGAAGCATCAGCATTAGAAGCCTGGGTTCCTTGTTCTCGTGCTCGTCGTCGCTaGTGCAGCCGCTCTCGGGCT +
Preference number: 4 (lower is better)
Translates to: VSSPKAEASALEAWVPCSRARRR*CSRSRA
Trigger: AGCCCGAGAGCGGCTGCAGCAGCGACGACGAGCACG...AGAACAAGGAACCCAGGCTTCTAATGCTGATGCTTCTGCTTTAGGGGAGGAGAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000192491.6
CDS-3UTR CCA 90 bp TTAGCTAGTCCTCACACACCCTCACAGCACACCACCAGAAGGGCGGGGCGGCTCGTACTTGGTAGCACCTaGATCGAATTCAGGGATCCG +
Preference number: 4 (lower is better)
Translates to: LASPHTPSQHTTRRAGRLVLGST*IEFRDP
Trigger: CGGATCCCTGAATTCGATCCAGGTGCTACCAAGTAC...GAGCCGCCCCGCCCTTCTGGTGGTGTGCTGTGAGGGTGTGTGAGGACTAGCTAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000192128.6
ENSMUST00000192491.6
CDS-3UTR CCA 90 bp ATCACAGTGGGCACTAGAAAGGAGGCCAAACAGAGGCCTCCTGCTGTGTCACACCCAGGCCGATCTTGCTaGTTTGGACCGGCTGGTCAG +
Preference number: 4 (lower is better)
Translates to: ITVGTRKEAKQRPPAVSHPGRSC*FGPAGQ
Trigger: CTGACCAGCCGGTCCAAACCAGCAAGATCGGCCTGG...GTGTGACACAGCAGGAGGCCTCTGTTTGGCCTCCTTTCTAGTGCCCACTGTGAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073279.13
ENSMUST00000110849.10
CDS-3UTR CCA 90 bp AGGACCAGAAGCTGGCATGTCCTTATGACTAAGCAGTCAGAGACGCCTCACGAGGCCTCAGGATGGTGTTaGCTGCGTTGGGGCTGCAGG +
Preference number: 4 (lower is better)
Translates to: RTRSWHVLMTKQSETPHEASGWC*LRWGCR
Trigger: CCTGCAGCCCCAACGCAGCCAACACCATCCTGAGGC...CTCGTGAGGCGTCTCTGACTGCTTAGTCATAAGGACATGCCAGCTTCTGGTCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000192128.6
ENSMUST00000192491.6
CDS-3UTR CCA 90 bp GCTGACCGCCAACCGTGGTCAACACTGGTCTTGGGTTTAGGCGGGGTGGCATGGTGTTGGACGAAGAAGTaGTGGAGGCTGGTTCAGAGT +
Preference number: 4 (lower is better)
Translates to: ADRQPWSTLVLGLGGVAWCWTKK*WRLVQS
Trigger: ACTCTGAACCAGCCTCCACCACTTCTTCGTCCAACA...CCATGCCACCCCGCCTAAACCCAAGACCAGTGTTGACCACGGTTGGCGGTCAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110849.10
3UTR CAA 72 bp GTGGTGGAGGCTGGTTCAGAGTGGCAATGGGGACTGTaGGTGTTGGAGTGGATGATGGGGCAGGAGGTGATG +
Preference number: 4 (lower is better)
Translates to: VVEAGSEWQWGL*VLEWMMGQEVM
Trigger: CATCACCTCCTGCCCCATCATCCACTCCAACACCAACAGTCCCCATTGCCACTCTGAACCAGCCTCCACCAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000192158.6
ENSMUST00000192222.6
3UTR CAA 72 bp AACCTGGCGCTTGAGAGAGATCAGCTCCATGTCCAGTaGCCTCAGGATGGTGTTGGCTGCGTTGGGGCTGCA +
Preference number: 4 (lower is better)
Translates to: NLALERDQLHVQ*PQDGVGCVGAA
Trigger: TGCAGCCCCAACGCAGCCAACACCATCCTGAGGCAACTGGACATGGAGCTGATCTCTCTCAAGCGCCAGGTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000192158.6
CDS-3UTR GCA 90 bp TATTGTCAGCCTTATGCTCATTTAGCTAGTCCTCACACACCCTCACAGCACACCTCGGGCTCCGAGAAGTaGAGCCCGCCGTTGGCCGAG +
Preference number: 4 (lower is better)
Translates to: YCQPYAHLASPHTPSQHTSGSEK*SPPLAE
Trigger: CTCGGCCAACGGCGGGCTGCACTTCTCGGAGCCCGA...GGTGTGCTGTGAGGGTGTGTGAGGACTAGCTAAATGAGCATAAGGCTGACAATA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000192128.6
ENSMUST00000192491.6
CDS-3UTR GCA 90 bp CTTCTTTCTTTGGGTCGTAGTCACTGTCGTTTCCATCCATGGGGTGAGCTTCTTTCGGGCTCCGAGAAGTaGAGCCCGCCGTTGGCCGAG +
Preference number: 4 (lower is better)
Translates to: LLSLGRSHCRFHPWGELLSGSEK*SPPLAE
Trigger: CTCGGCCAACGGCGGGCTGCACTTCTCGGAGCCCGA...AAGAAGCTCACCCCATGGATGGAAACGACAGTGACTACGACCCAAAGAAAGAAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000192158.6
CDS-3UTR GCA 90 bp CAGTCAGAGACGCCTCACGAGGAAGTGTATTGTCAGCCTTATGCTCATTTAGCTTCGGGCTCCGAGAAGTaGAGCCCGCCGTTGGCCGAG +
Preference number: 4 (lower is better)
Translates to: QSETPHEEVYCQPYAHLASGSEK*SPPLAE
Trigger: CTCGGCCAACGGCGGGCTGCACTTCTCGGAGCCCGA...AGCTAAATGAGCATAAGGCTGACAATACACTTCCTCGTGAGGCGTCTCTGACTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000192128.6
ENSMUST00000192491.6
CDS-3UTR GCA 90 bp GGTGAGCCTTTGTCCAGCGTAATTAGTGCAGTGAAGGCTGTGAATCTGTCTGAACGTGCTCGTCGTCGCTaGTGCAGCCGCTCTCGGGCT +
Preference number: 4 (lower is better)
Translates to: GEPLSSVISAVKAVNLSERARRR*CSRSRA
Trigger: AGCCCGAGAGCGGCTGCAGCAGCGACGACGAGCACG...TTCAGACAGATTCACAGCCTTCACTGCACTAATTACGCTGGACAAAGGCTCACC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000110849.10
ENSMUST00000192158.6
CDS-3UTR GCA 90 bp CATGTCCTTATGACTAAGCAGTCAGAGACGCCTCACGAGGAAGTGTATTGTCAGCGTGCTCGTCGTCGCTaGTGCAGCCGCTCTCGGGCT +
Preference number: 4 (lower is better)
Translates to: HVLMTKQSETPHEEVYCQRARRR*CSRSRA
Trigger: AGCCCGAGAGCGGCTGCAGCAGCGACGACGAGCACG...CTGACAATACACTTCCTCGTGAGGCGTCTCTGACTGCTTAGTCATAAGGACATG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000192128.6
ENSMUST00000192491.6
CDS-3UTR CCA 90 bp GCTGACCGCCAACCGTGGTCAACACTGGTCTTGGGTTTAGGCGGGGTGGCATGGGCTAGTTTACGAGCCTaGCGATCCATCAAACTTGTC +
Preference number: 4 (lower is better)
Translates to: ADRQPWSTLVLGLGGVAWASLRA*RSIKLV
Trigger: GACAAGTTTGATGGATCGCCAGGCTCGTAAACTAGC...CCATGCCACCCCGCCTAAACCCAAGACCAGTGTTGACCACGGTTGGCGGTCAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110849.10
CDS-3UTR CCA 90 bp GGAGGCCAAACAGAGGCCTCCTGCTGTGTCACACCACTTACACTAGTCCACCGCGCCACCACGTCCTCCTaGGTTAGATACATGCCCTTA +
Preference number: 4 (lower is better)
Translates to: GGQTEASCCVTPLTLVHRATTSS*VRYMPL
Trigger: TAAGGGCATGTATCTAACCCAGGAGGACGTGGTGGC...GCGGTGGACTAGTGTAAGTGGTGTGACACAGCAGGAGGCCTCTGTTTGGCCTCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073279.13
ENSMUST00000110849.10
CDS-3UTR TCA 90 bp GTTTGCCTTGTTTGGATCAGTCAGATGAGCACTGGTACAATGATAGGTGAGCCTGGAGGAGGTTGTCGGTaGAGAGCAGGGGCGGCAGGC +
Preference number: 4 (lower is better)
Translates to: VCLVWISQMSTGTMIGEPGGGCR*RAGAAG
Trigger: GCCTGCCGCCCCTGCTCTTCACCGACAACCTCCTCC...AGGCTCACCTATCATTGTACCAGTGCTCATCTGACTGATCCAAACAAGGCAAAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073279.13
ENSMUST00000110849.10
CDS-3UTR TCA 90 bp AGACTGTACTGCAGGTCTACTGACGAGAGACAAGACGATGAAAGCTGTCACGGTGTGGAGGAGGCTGATTaGGAGTTGGCCGGGGCTGGA +
Preference number: 4 (lower is better)
Translates to: RLYCRSTDERQDDESCHGVEEAD*ELAGAG
Trigger: TCCAGCCCCGGCCAACTCTCAATCAGCCTCCTCCAC...ACCGTGACAGCTTTCATCGTCTTGTCTCTCGTCAGTAGACCTGCAGTACAGTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073279.13
ENSMUST00000110849.10
CDS-3UTR TCA 90 bp AGACTGTACTGCAGGTCTACTGACGAGAGACAAGACGATGAAAGCTGTCACGGTAGAGGTGGAGGAGGCTaGTTGAGAGTTGGCCGGGGC +
Preference number: 4 (lower is better)
Translates to: RLYCRSTDERQDDESCHGRGGGG*LRVGRG
Trigger: GCCCCGGCCAACTCTCAATCAGCCTCCTCCACCTCT...ACCGTGACAGCTTTCATCGTCTTGTCTCTCGTCAGTAGACCTGCAGTACAGTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073279.13
ENSMUST00000110849.10
CDS-3UTR GCA 90 bp GGAAGGACTAGTTTGCCTTGTTTGGATCAGTCAGATGAGCACTGGTACAATGATGCTCGTCGTCGCTGCTaGAGCCGCTCTCGGGCTCCG +
Preference number: 4 (lower is better)
Translates to: GRTSLPCLDQSDEHWYNDARRRC*SRSRAP
Trigger: CGGAGCCCGAGAGCGGCTGCAGCAGCGACGACGAGC...ATCATTGTACCAGTGCTCATCTGACTGATCCAAACAAGGCAAACTAGTCCTTCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073279.13
ENSMUST00000110849.10
ENSMUST00000192158.6
CDS-3UTR GCA 90 bp CGGAAAGGGCGTGAAGTTAGGGAGGTCCGCAAGGGACTTCTCAATGTTGTGTTTATCCCAACATCCCCGTaGTCGTCGTCGCTGCTGCAG +
Preference number: 4 (lower is better)
Translates to: RKGREVREVRKGLLNVVFIPTSP*SSSLLQ
Trigger: CTGCAGCAGCGACGACGAGCACGGGGATGTTGGGAT...AAACACAACATTGAGAAGTCCCTTGCGGACCTCCCTAACTTCACGCCCTTTCCG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000192158.6
CDS-3UTR GCA 90 bp CACTTTCGCTCTGCTAGGACCAGAAGCTGGCATGTCCTTATGACTAAGCAGTCATGGCTGCGTTGGGGCTaGAGGAGACAGCCACCACGT +
Preference number: 4 (lower is better)
Translates to: HFRSARTRSWHVLMTKQSWLRWG*RRQPPR
Trigger: ACGTGGTGGCTGTCTCCTGCAGCCCCAACGCAGCCA...TGACTGCTTAGTCATAAGGACATGCCAGCTTCTGGTCCTAGCAGAGCGAAAGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000192128.6
ENSMUST00000192491.6
CDS-3UTR GCA 90 bp TTTCTTCCCATGAGATCACAGTGGGCACTAGAAAGGAGGCCAAACAGAGGCCTCCAGGATGGTGTTGGCTaGGTTGGGGCTGCAGGAGAC +
Preference number: 4 (lower is better)
Translates to: FLPMRSQWALERRPNRGLQDGVG*VGAAGD
Trigger: GTCTCCTGCAGCCCCAACGCAGCCAACACCATCCTG...GAGGCCTCTGTTTGGCCTCCTTTCTAGTGCCCACTGTGATCTCATGGGAAGAAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073279.13
ENSMUST00000110849.10
CDS-3UTR GCA 90 bp ATCACAGTGGGCACTAGAAAGGAGGCCAAACAGAGGCCTCCTGCTGTGTCACACATGAACCGAGCCTGCTaGTGGAGTGGAGGAGGTTGT +
Preference number: 4 (lower is better)
Translates to: ITVGTRKEAKQRPPAVSHMNRAC*WSGGGC
Trigger: ACAACCTCCTCCACTCCAGCAGCAGGCTCGGTTCAT...GTGTGACACAGCAGGAGGCCTCTGTTTGGCCTCCTTTCTAGTGCCCACTGTGAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073279.13
ENSMUST00000110849.10
CDS-3UTR CCA 90 bp AGGCAGTGTTGGACGAAGAAGTGGTGGAGGCTGGTTCAGAGTGGCAATGGGGACTCAGGGATCCGAGCTTaGTATTCAGCTCCGACTCTC +
Preference number: 4 (lower is better)
Translates to: RQCWTKKWWRLVQSGNGDSGIRA*YSAPTL
Trigger: GAGAGTCGGAGCTGAATACCAAGCTCGGATCCCTGA...GTCCCCATTGCCACTCTGAACCAGCCTCCACCACTTCTTCGTCCAACACTGCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000192158.6
CDS-3UTR CCA 90 bp TTTCTTCCCATGAGATCACAGTGGGCACTAGAAAGGAGGCCAAACAGAGGCCTCTGGTGTTGGCTGCGTTaGGGCTGCAGGAGACAGCCA +
Preference number: 4 (lower is better)
Translates to: FLPMRSQWALERRPNRGLWCWLR*GCRRQP
Trigger: TGGCTGTCTCCTGCAGCCCCAACGCAGCCAACACCA...GAGGCCTCTGTTTGGCCTCCTTTCTAGTGCCCACTGTGATCTCATGGGAAGAAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073279.13
ENSMUST00000110849.10
CDS-3UTR CCA 90 bp TCCTCCCCTAAAGCAGAAGCATCAGCATTAGAAGCCTGGGTTCCTTGTTCTGCTGCCTCAGGATGGTGTTaGCTGCGTTGGGGCTGCAGG +
Preference number: 4 (lower is better)
Translates to: SSPKAEASALEAWVPCSAASGWC*LRWGCR
Trigger: CCTGCAGCCCCAACGCAGCCAACACCATCCTGAGGC...AGCAGAACAAGGAACCCAGGCTTCTAATGCTGATGCTTCTGCTTTAGGGGAGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000192491.6
CDS-3UTR GCA 90 bp CACTTTCGCTCTGCTAGGACCAGAAGCTGGCATGTCCTTATGACTAAGCAGTCAATCCCAACATCCCCGTaGTCGTCGTCGCTGCTGCAG +
Preference number: 4 (lower is better)
Translates to: HFRSARTRSWHVLMTKQSIPTSP*SSSLLQ
Trigger: CTGCAGCAGCGACGACGAGCACGGGGATGTTGGGAT...TGACTGCTTAGTCATAAGGACATGCCAGCTTCTGGTCCTAGCAGAGCGAAAGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000192128.6
ENSMUST00000192491.6
CDS-3UTR GCA 90 bp TTTCGCTCTGCTAGGACCAGAAGCTGGCATGTCCTTATGACTAAGCAGTCAGAGATCCCAACATCCCCGTaGTCGTCGTCGCTGCTGCAG +
Preference number: 4 (lower is better)
Translates to: FRSARTRSWHVLMTKQSEIPTSP*SSSLLQ
Trigger: CTGCAGCAGCGACGACGAGCACGGGGATGTTGGGAT...CTCTGACTGCTTAGTCATAAGGACATGCCAGCTTCTGGTCCTAGCAGAGCGAAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000192128.6
ENSMUST00000192491.6
CDS-3UTR GCA 90 bp TATTGTCAGCCTTATGCTCATTTAGCTAGTCCTCACACACCCTCACAGCACACCTGGCTGCGTTGGGGCTaGAGGAGACAGCCACCACGT +
Preference number: 4 (lower is better)
Translates to: YCQPYAHLASPHTPSQHTWLRWG*RRQPPR
Trigger: ACGTGGTGGCTGTCTCCTGCAGCCCCAACGCAGCCA...GGTGTGCTGTGAGGGTGTGTGAGGACTAGCTAAATGAGCATAAGGCTGACAATA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000192128.6
ENSMUST00000192491.6
CDS-3UTR GCA 90 bp GAAGCCTGGGTTCCTTGTTCTGCTTCCCACTCCTGCAATACCTCCTCTAAGTTACAGGATGGTGTTGGCTaGGTTGGGGCTGCAGGAGAC +
Preference number: 4 (lower is better)
Translates to: EAWVPCSASHSCNTSSKLQDGVG*VGAAGD
Trigger: GTCTCCTGCAGCCCCAACGCAGCCAACACCATCCTG...TAACTTAGAGGAGGTATTGCAGGAGTGGGAAGCAGAACAAGGAACCCAGGCTTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000192491.6
CDS-3UTR CCA 90 bp CAGAAGGGCGGGGCGGCTCCTCAGCTCAGATTAGCTCAGATTCCAGACACAAACGTACTTGGTAGCACCTaGATCGAATTCAGGGATCCG +
Preference number: 4 (lower is better)
Translates to: QKGGAAPQLRLAQIPDTNVLGST*IEFRDP
Trigger: CGGATCCCTGAATTCGATCCAGGTGCTACCAAGTAC...GTTTGTGTCTGGAATCTGAGCTAATCTGAGCTGAGGAGCCGCCCCGCCCTTCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000192491.6
CDS-3UTR CCA 90 bp ACTTTTCTTCCCATGAGATCACAGTGGGCACTAGAAAGGAGGCCAAACAGAGGCAGTCCGAGGAGCCTGTaGGGTCTGTGCCTTGCACTG +
Preference number: 4 (lower is better)
Translates to: TFLPMRSQWALERRPNRGSPRSL*GLCLAL
Trigger: CAGTGCAAGGCACAGACCCCACAGGCTCCTCGGACT...GCCTCTGTTTGGCCTCCTTTCTAGTGCCCACTGTGATCTCATGGGAAGAAAAGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110849.10
CDS-3UTR TCA 90 bp CCAAACAGAGGCCTCCTGCTGTGTCACACCACTTACACTAGTCCACCGCCACACACACCTCAGGCGGTTTaGACTCTTCAATTCCACCTT +
Preference number: 4 (lower is better)
Translates to: PNRGLLLCHTTYTSPPPHTPQAV*TLQFHL
Trigger: AAGGTGGAATTGAAGAGTTCAAACCGCCTGAGGTGT...GTGTGGCGGTGGACTAGTGTAAGTGGTGTGACACAGCAGGAGGCCTCTGTTTGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000192222.6
CDS-3UTR GCA 90 bp TTGTGGGTGCTAATGACTTTGCATTGGAATAAAAAGGCCTTAAGCCTCTGTTTCGCTCGTCGTCGCTGCTaGAGCCGCTCTCGGGCTCCG +
Preference number: 4 (lower is better)
Translates to: LWVLMTLHWNKKALSLCFARRRC*SRSRAP
Trigger: CGGAGCCCGAGAGCGGCTGCAGCAGCGACGACGAGC...GAAACAGAGGCTTAAGGCCTTTTTATTCCAATGCAAAGTCATTAGCACCCACAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000073279.13
ENSMUST00000110849.10
ENSMUST00000192158.6
CDS-3UTR GCA 90 bp GGAGGCCAAACAGAGGCCTCCTGCTGTGTCACACCACTTACACTAGTCCACCGCTATGCCAGAACAACATaGCAAGCGCCTGTTCAACAT +
Preference number: 4 (lower is better)
Translates to: GGQTEASCCVTPLTLVHRYARTT*QAPVQH
Trigger: ATGTTGAACAGGCGCTTGGCATGTTGTTCTGGCATA...GCGGTGGACTAGTGTAAGTGGTGTGACACAGCAGGAGGCCTCTGTTTGGCCTCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073279.13
ENSMUST00000110849.10
CDS-3UTR CCA 90 bp CACGAGGAAGTGTATTGTCAGCCTTATGCTCATTTAGCTAGTCCTCACACACCCCCAGGCCGATCTTGCTaGTTTGGACCGGCTGGTCAG +
Preference number: 4 (lower is better)
Translates to: HEEVYCQPYAHLASPHTPPGRSC*FGPAGQ
Trigger: CTGACCAGCCGGTCCAAACCAGCAAGATCGGCCTGG...GGGTGTGTGAGGACTAGCTAAATGAGCATAAGGCTGACAATACACTTCCTCGTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000192128.6
ENSMUST00000192491.6
CDS-3UTR CCA 90 bp TATTGTCAGCCTTATGCTCATTTAGCTAGTCCTCACACACCCTCACAGCACACCCCAGGCCGATCTTGCTaGTTTGGACCGGCTGGTCAG +
Preference number: 4 (lower is better)
Translates to: YCQPYAHLASPHTPSQHTPGRSC*FGPAGQ
Trigger: CTGACCAGCCGGTCCAAACCAGCAAGATCGGCCTGG...GGTGTGCTGTGAGGGTGTGTGAGGACTAGCTAAATGAGCATAAGGCTGACAATA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000192128.6
ENSMUST00000192491.6
CDS-3UTR CCA 90 bp TATTGTCAGCCTTATGCTCATTTAGCTAGTCCTCACACACCCTCACAGCACACCTGGTGTTGGCTGCGTTaGGGCTGCAGGAGACAGCCA +
Preference number: 4 (lower is better)
Translates to: YCQPYAHLASPHTPSQHTWCWLR*GCRRQP
Trigger: TGGCTGTCTCCTGCAGCCCCAACGCAGCCAACACCA...GGTGTGCTGTGAGGGTGTGTGAGGACTAGCTAAATGAGCATAAGGCTGACAATA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000192128.6
ENSMUST00000192491.6
CDS-3UTR CCA 90 bp CCTTTGTCCAGCGTAATTAGTGCAGTGAAGGCTGTGAATCTGTCTGAATCCCAAGCCTCAGGATGGTGTTaGCTGCGTTGGGGCTGCAGG +
Preference number: 4 (lower is better)
Translates to: PLSSVISAVKAVNLSESQASGWC*LRWGCR
Trigger: CCTGCAGCCCCAACGCAGCCAACACCATCCTGAGGC...TTGGGATTCAGACAGATTCACAGCCTTCACTGCACTAATTACGCTGGACAAAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110849.10
CDS-3UTR CCA 90 bp GGTGAGCCTTTGTCCAGCGTAATTAGTGCAGTGAAGGCTGTGAATCTGTCTGAACCAGTTGCCTCAGGATaGTGTTGGCTGCGTTGGGGC +
Preference number: 4 (lower is better)
Translates to: GEPLSSVISAVKAVNLSEPVASG*CWLRWG
Trigger: GCCCCAACGCAGCCAACACCATCCTGAGGCAACTGG...TTCAGACAGATTCACAGCCTTCACTGCACTAATTACGCTGGACAAAGGCTCACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110849.10
CDS-3UTR CCA 90 bp TATTGTCAGCCTTATGCTCATTTAGCTAGTCCTCACACACCCTCACAGCACACCCCAGTTGCCTCAGGATaGTGTTGGCTGCGTTGGGGC +
Preference number: 4 (lower is better)
Translates to: YCQPYAHLASPHTPSQHTPVASG*CWLRWG
Trigger: GCCCCAACGCAGCCAACACCATCCTGAGGCAACTGG...GGTGTGCTGTGAGGGTGTGTGAGGACTAGCTAAATGAGCATAAGGCTGACAATA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000192128.6
ENSMUST00000192491.6
CDS-3UTR CCA 90 bp ACTTTTCTTCCCATGAGATCACAGTGGGCACTAGAAAGGAGGCCAAACAGAGGCAGGCTGATTGAGAGTTaGCCGGGGCTGGATGAACCG +
Preference number: 4 (lower is better)
Translates to: TFLPMRSQWALERRPNRGRLIES*PGLDEP
Trigger: CGGTTCATCCAGCCCCGGCCAACTCTCAATCAGCCT...GCCTCTGTTTGGCCTCCTTTCTAGTGCCCACTGTGATCTCATGGGAAGAAAAGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000073279.13
ENSMUST00000110849.10
CDS-3UTR TCA 90 bp CCAAACAGAGGCCTCCTGCTGTGTCACACCACTTACACTAGTCCACCGCCACACTCATCACTGTCACCCTaGTTGTGTCTATTGGCTAGT +
Preference number: 4 (lower is better)
Translates to: PNRGLLLCHTTYTSPPPHSSLSP*LCLLAS
Trigger: ACTAGCCAATAGACACAATCAGGGTGACAGTGATGA...GTGTGGCGGTGGACTAGTGTAAGTGGTGTGACACAGCAGGAGGCCTCTGTTTGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073279.13
ENSMUST00000110849.10
CDS-3UTR TCA 90 bp TCTTTGTGGGTGCTAATGACTTTGCATTGGAATAAAAAGGCCTTAAGCCTCTGTGGAGGAGGTTGTCGGTaGAGAGCAGGGGCGGCAGGC +
Preference number: 4 (lower is better)
Translates to: SLWVLMTLHWNKKALSLCGGGCR*RAGAAG
Trigger: GCCTGCCGCCCCTGCTCTTCACCGACAACCTCCTCC...ACAGAGGCTTAAGGCCTTTTTATTCCAATGCAAAGTCATTAGCACCCACAAAGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000073279.13
ENSMUST00000110849.10
CDS-3UTR GCA 90 bp GGACTAGTTTGCCTTGTTTGGATCAGTCAGATGAGCACTGGTACAATGATAGGTTGGCTGCGTTGGGGCTaGAGGAGACAGCCACCACGT +
Preference number: 4 (lower is better)
Translates to: GLVCLVWISQMSTGTMIGWLRWG*RRQPPR
Trigger: ACGTGGTGGCTGTCTCCTGCAGCCCCAACGCAGCCA...ACCTATCATTGTACCAGTGCTCATCTGACTGATCCAAACAAGGCAAACTAGTCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073279.13
ENSMUST00000110849.10
CDS-3UTR GCA 90 bp CAGCCTTATGCTCATTTAGCTAGTCCTCACACACCCTCACAGCACACCACCAGAAGCTCCATGTCCAGTTaGCTCAGGATGGTGTTGGCT +
Preference number: 4 (lower is better)
Translates to: QPYAHLASPHTPSQHTTRSSMSS*LRMVLA
Trigger: AGCCAACACCATCCTGAGGCAACTGGACATGGAGCT...TCTGGTGGTGTGCTGTGAGGGTGTGTGAGGACTAGCTAAATGAGCATAAGGCTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000192128.6
ENSMUST00000192491.6
CDS-3UTR CCA 90 bp TTAGCTAGTCCTCACACACCCTCACAGCACACCACCAGAAGGGCGGGGCGGCTCTGCAATTGTCTTATCTaGAAGCATTTGCTGAATCCT +
Preference number: 4 (lower is better)
Translates to: LASPHTPSQHTTRRAGRLCNCLI*KHLLNP
Trigger: AGGATTCAGCAAATGCTTCCAGATAAGACAATTGCA...GAGCCGCCCCGCCCTTCTGGTGGTGTGCTGTGAGGGTGTGTGAGGACTAGCTAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000192128.6
ENSMUST00000192491.6
CDS-3UTR CCA 90 bp CCAAACAGAGGCCTCCTGCTGTGTCACACCACTTACACTAGTCCACCGCCACACCGTTACCCTCTCTTTTaGCTTCTTTCTTTGGGTCGT +
Preference number: 4 (lower is better)
Translates to: PNRGLLLCHTTYTSPPPHRYPLF*LLSLGR
Trigger: ACGACCCAAAGAAAGAAGCCAAAAGAGAGGGTAACG...GTGTGGCGGTGGACTAGTGTAAGTGGTGTGACACAGCAGGAGGCCTCTGTTTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073279.13
ENSMUST00000110849.10
CDS-3UTR CCA 90 bp GTTTGCCTTGTTTGGATCAGTCAGATGAGCACTGGTACAATGATAGGTGAGCCTAACCGAGCCTGCTGCTaGAGTGGAGGAGGTTGTCGG +
Preference number: 4 (lower is better)
Translates to: VCLVWISQMSTGTMIGEPNRACC*SGGGCR
Trigger: CCGACAACCTCCTCCACTCCAGCAGCAGGCTCGGTT...AGGCTCACCTATCATTGTACCAGTGCTCATCTGACTGATCCAAACAAGGCAAAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073279.13
ENSMUST00000110849.10
CDS-3UTR CCA 90 bp CCTTTGTCCAGCGTAATTAGTGCAGTGAAGGCTGTGAATCTGTCTGAATCCCAAAACCGAGCCTGCTGCTaGAGTGGAGGAGGTTGTCGG +
Preference number: 4 (lower is better)
Translates to: PLSSVISAVKAVNLSESQNRACC*SGGGCR
Trigger: CCGACAACCTCCTCCACTCCAGCAGCAGGCTCGGTT...TTGGGATTCAGACAGATTCACAGCCTTCACTGCACTAATTACGCTGGACAAAGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110849.10
CDS-3UTR TCA 90 bp TTGTGGGTGCTAATGACTTTGCATTGGAATAAAAAGGCCTTAAGCCTCTGTTTCTTGGCCGGGGCTGGATaGACCGAGCCTGCTGCTGGA +
Preference number: 4 (lower is better)
Translates to: LWVLMTLHWNKKALSLCFLAGAG*TEPAAG
Trigger: TCCAGCAGCAGGCTCGGTTCATCCAGCCCCGGCCAA...GAAACAGAGGCTTAAGGCCTTTTTATTCCAATGCAAAGTCATTAGCACCCACAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000073279.13
ENSMUST00000110849.10
CDS-3UTR TCA 90 bp GTTTGCCTTGTTTGGATCAGTCAGATGAGCACTGGTACAATGATAGGTGAGCCTCTGAATCCCAATGAGTaGAGGTGGCTGCTGACCGCC +
Preference number: 4 (lower is better)
Translates to: VCLVWISQMSTGTMIGEPLNPNE*RWLLTA
Trigger: GGCGGTCAGCAGCCACCTTCACTCATTGGGATTCAG...AGGCTCACCTATCATTGTACCAGTGCTCATCTGACTGATCCAAACAAGGCAAAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000073279.13
CDS-3UTR TCA 90 bp ATGACTAAGCAGTCAGAGACGCCTCACGAGGAAGTGTATTGTCAGCCTTATGCTGTCAGTGCTCTTCCCTaGCGGCACCTTAGAAGCACT +
Preference number: 4 (lower is better)
Translates to: MTKQSETPHEEVYCQPYAVSALP*RHLRST
Trigger: AGTGCTTCTAAGGTGCCGTCAGGGAAGAGCACTGAC...AGCATAAGGCTGACAATACACTTCCTCGTGAGGCGTCTCTGACTGCTTAGTCAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000192128.6
CDS-3UTR CCA 90 bp TTTCTTCCCATGAGATCACAGTGGGCACTAGAAAGGAGGCCAAACAGAGGCCTCGTACTTGGTAGCACCTaGATCGAATTCAGGGATCCG +
Preference number: 4 (lower is better)
Translates to: FLPMRSQWALERRPNRGLVLGST*IEFRDP
Trigger: CGGATCCCTGAATTCGATCCAGGTGCTACCAAGTAC...GAGGCCTCTGTTTGGCCTCCTTTCTAGTGCCCACTGTGATCTCATGGGAAGAAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073279.13
ENSMUST00000110849.10
ENSMUST00000192158.6
CDS-3UTR CCA 90 bp AGGACCAGAAGCTGGCATGTCCTTATGACTAAGCAGTCAGAGACGCCTCACGAGCCTGATTGTGTCTATTaGCTAGTTTACGAGCCTGGC +
Preference number: 4 (lower is better)
Translates to: RTRSWHVLMTKQSETPHEPDCVY*LVYEPG
Trigger: GCCAGGCTCGTAAACTAGCCAATAGACACAATCAGG...CTCGTGAGGCGTCTCTGACTGCTTAGTCATAAGGACATGCCAGCTTCTGGTCCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000192128.6
ENSMUST00000192491.6
CDS-3UTR CCA 90 bp GGACTAGTTTGCCTTGTTTGGATCAGTCAGATGAGCACTGGTACAATGATAGGTCCAGGCCGATCTTGCTaGTTTGGACCGGCTGGTCAG +
Preference number: 4 (lower is better)
Translates to: GLVCLVWISQMSTGTMIGPGRSC*FGPAGQ
Trigger: CTGACCAGCCGGTCCAAACCAGCAAGATCGGCCTGG...ACCTATCATTGTACCAGTGCTCATCTGACTGATCCAAACAAGGCAAACTAGTCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073279.13
ENSMUST00000110849.10
CDS-3UTR CCA 90 bp AGGACTAGTTTGCCTTGTTTGGATCAGTCAGATGAGCACTGGTACAATGATAGGTGGTGTTGGCTGCGTTaGGGCTGCAGGAGACAGCCA +
Preference number: 4 (lower is better)
Translates to: RTSLPCLDQSDEHWYNDRWCWLR*GCRRQP
Trigger: TGGCTGTCTCCTGCAGCCCCAACGCAGCCAACACCA...CCTATCATTGTACCAGTGCTCATCTGACTGATCCAAACAAGGCAAACTAGTCCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073279.13
ENSMUST00000110849.10
CDS-3UTR CCA 90 bp ACATCTCCCACAGACTGTACTGCAGGTCTACTGACGAGAGACAAGACGATGAAAAGAAGTGGTGGAGGCTaGTTCAGAGTGGCAATGGGG +
Preference number: 4 (lower is better)
Translates to: TSPTDCTAGLLTRDKTMKRSGGG*FRVAMG
Trigger: CCCCATTGCCACTCTGAACCAGCCTCCACCACTTCT...TTTCATCGTCTTGTCTCTCGTCAGTAGACCTGCAGTACAGTCTGTGGGAGATGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073279.13
ENSMUST00000110849.10
CDS-3UTR CCA 90 bp GGTGAGCCTTTGTCCAGCGTAATTAGTGCAGTGAAGGCTGTGAATCTGTCTGAAAGAAGTGGTGGAGGCTaGTTCAGAGTGGCAATGGGG +
Preference number: 4 (lower is better)
Translates to: GEPLSSVISAVKAVNLSERSGGG*FRVAMG
Trigger: CCCCATTGCCACTCTGAACCAGCCTCCACCACTTCT...TTCAGACAGATTCACAGCCTTCACTGCACTAATTACGCTGGACAAAGGCTCACC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110849.10
CDS-3UTR CCA 90 bp CATCCCTCAGATACAGCACCTAAGCCACAGATACTGAACATCTGGACAGATGCTTGGACGAAGAAGTGGTaGAGGCTGGTTCAGAGTGGC +
Preference number: 4 (lower is better)
Translates to: HPSDTAPKPQILNIWTDAWTKKW*RLVQSG
Trigger: GCCACTCTGAACCAGCCTCCACCACTTCTTCGTCCA...AGCATCTGTCCAGATGTTCAGTATCTGTGGCTTAGGTGCTGTATCTGAGGGATG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073279.13
ENSMUST00000110849.10
CDS-3UTR CCA 90 bp AGGACTAGTTTGCCTTGTTTGGATCAGTCAGATGAGCACTGGTACAATGATAGGGGCGGCAGGCAGTGTTaGACGAAGAAGTGGTGGAGG +
Preference number: 4 (lower is better)
Translates to: RTSLPCLDQSDEHWYNDRGGRQC*TKKWWR
Trigger: CCTCCACCACTTCTTCGTCCAACACTGCCTGCCGCC...CCTATCATTGTACCAGTGCTCATCTGACTGATCCAAACAAGGCAAACTAGTCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073279.13
ENSMUST00000110849.10
3UTR CAA 72 bp GCTGGTCAGCGTTACCCTCTCTTTTGGCTTCTTTCTTaGGGTCGTAGTCACTGTCGTTTCCATCCATGGGGT +
Preference number: 4 (lower is better)
Translates to: AGQRYPLFWLLS*GRSHCRFHPWG
Trigger: ACCCCATGGATGGAAACGACAGTGACTACGACCCAAAGAAAGAAGCCAAAAGAGAGGGTAACGCTGACCAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000192158.6
CDS-3UTR TCA 90 bp AGGACCAGAAGCTGGCATGTCCTTATGACTAAGCAGTCAGAGACGCCTCACGAGTCATCACTGTCACCCTaGTTGTGTCTATTGGCTAGT +
Preference number: 4 (lower is better)
Translates to: RTRSWHVLMTKQSETPHESSLSP*LCLLAS
Trigger: ACTAGCCAATAGACACAATCAGGGTGACAGTGATGA...CTCGTGAGGCGTCTCTGACTGCTTAGTCATAAGGACATGCCAGCTTCTGGTCCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000192128.6
ENSMUST00000192491.6
CDS-3UTR TCA 90 bp TTTCTTCCCATGAGATCACAGTGGGCACTAGAAAGGAGGCCAAACAGAGGCCTCTTTCCATCCATGGGGTaGGCTTCTTCTACGTCATCA +
Preference number: 4 (lower is better)
Translates to: FLPMRSQWALERRPNRGLFPSMG*ASSTSS
Trigger: TGATGACGTAGAAGAAGCTCACCCCATGGATGGAAA...GAGGCCTCTGTTTGGCCTCCTTTCTAGTGCCCACTGTGATCTCATGGGAAGAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073279.13
ENSMUST00000110849.10
CDS-3UTR TCA 90 bp TCTTTGTGGGTGCTAATGACTTTGCATTGGAATAAAAAGGCCTTAAGCCTCTGTAGAGGTGGAGGAGGCTaGTTGAGAGTTGGCCGGGGC +
Preference number: 4 (lower is better)
Translates to: SLWVLMTLHWNKKALSLCRGGGG*LRVGRG
Trigger: GCCCCGGCCAACTCTCAATCAGCCTCCTCCACCTCT...ACAGAGGCTTAAGGCCTTTTTATTCCAATGCAAAGTCATTAGCACCCACAAAGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000073279.13
ENSMUST00000110849.10
CDS-3UTR TCA 90 bp TTTCTTCCCATGAGATCACAGTGGGCACTAGAAAGGAGGCCAAACAGAGGCCTCGGCTGTGAATCTGTCTaGATCCCAATGAGTGAAGGT +
Preference number: 4 (lower is better)
Translates to: FLPMRSQWALERRPNRGLGCESV*IPMSEG
Trigger: ACCTTCACTCATTGGGATTCAGACAGATTCACAGCC...GAGGCCTCTGTTTGGCCTCCTTTCTAGTGCCCACTGTGATCTCATGGGAAGAAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000073279.13
CDS-3UTR TCA 90 bp TCAGTGCTCTTCCCTGACGGCACCTTAGAAGCACTTTGTGTCTCCTCCCCTAAAACACCTCAGGCGGTTTaGACTCTTCAATTCCACCTT +
Preference number: 4 (lower is better)
Translates to: SVLFPDGTLEALCVSSPKTPQAV*TLQFHL
Trigger: AAGGTGGAATTGAAGAGTTCAAACCGCCTGAGGTGT...TTTAGGGGAGGAGACACAAAGTGCTTCTAAGGTGCCGTCAGGGAAGAGCACTGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000192222.6
ENSMUST00000192491.6
CDS-3UTR GCA 90 bp AAAACCAAACCAAACCAAACACTCTTTGTATCAAACACAGATCCTCTTAGTGAGCGTGCTCGTCGTCGCTaGTGCAGCCGCTCTCGGGCT +
Preference number: 4 (lower is better)
Translates to: KTKPNQTLFVSNTDPLSERARRR*CSRSRA
Trigger: AGCCCGAGAGCGGCTGCAGCAGCGACGACGAGCACG...CTCACTAAGAGGATCTGTGTTTGATACAAAGAGTGTTTGGTTTGGTTTGGTTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073279.13
ENSMUST00000110849.10
ENSMUST00000192158.6
CDS-3UTR GCA 90 bp CCAAACAGAGGCCTCCTGCTGTGTCACACCACTTACACTAGTCCACCGCCACACTCAATGTTGTGTTTATaGCAGAACAACATGCCAAGC +
Preference number: 4 (lower is better)
Translates to: PNRGLLLCHTTYTSPPPHSMLCL*QNNMPS
Trigger: GCTTGGCATGTTGTTCTGGCATAAACACAACATTGA...GTGTGGCGGTGGACTAGTGTAAGTGGTGTGACACAGCAGGAGGCCTCTGTTTGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073279.13
ENSMUST00000110849.10
CDS-3UTR GCA 90 bp TCTTTGTGGGTGCTAATGACTTTGCATTGGAATAAAAAGGCCTTAAGCCTCTGTTGGCTGCGTTGGGGCTaGAGGAGACAGCCACCACGT +
Preference number: 4 (lower is better)
Translates to: SLWVLMTLHWNKKALSLCWLRWG*RRQPPR
Trigger: ACGTGGTGGCTGTCTCCTGCAGCCCCAACGCAGCCA...ACAGAGGCTTAAGGCCTTTTTATTCCAATGCAAAGTCATTAGCACCCACAAAGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000073279.13
ENSMUST00000110849.10
CDS-3UTR GCA 90 bp CATGTCCTTATGACTAAGCAGTCAGAGACGCCTCACGAGGAAGTGTATTGTCAGAGCTCCATGTCCAGTTaGCTCAGGATGGTGTTGGCT +
Preference number: 4 (lower is better)
Translates to: HVLMTKQSETPHEEVYCQSSMSS*LRMVLA
Trigger: AGCCAACACCATCCTGAGGCAACTGGACATGGAGCT...CTGACAATACACTTCCTCGTGAGGCGTCTCTGACTGCTTAGTCATAAGGACATG
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000192128.6
ENSMUST00000192491.6
CDS-3UTR GCA 90 bp GGAAGGACTAGTTTGCCTTGTTTGGATCAGTCAGATGAGCACTGGTACAATGATTGGATGAACCGAGCCTaGTGCTGGAGTGGAGGAGGT +
Preference number: 4 (lower is better)
Translates to: GRTSLPCLDQSDEHWYNDWMNRA*CWSGGG
Trigger: ACCTCCTCCACTCCAGCAGCAGGCTCGGTTCATCCA...ATCATTGTACCAGTGCTCATCTGACTGATCCAAACAAGGCAAACTAGTCCTTCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073279.13
ENSMUST00000110849.10
CDS-3UTR CCA 90 bp CATGTCCTTATGACTAAGCAGTCAGAGACGCCTCACGAGGAAGTGTATTGTCAGTCAGGGATCCGAGCTTaGTATTCAGCTCCGACTCTC +
Preference number: 4 (lower is better)
Translates to: HVLMTKQSETPHEEVYCQSGIRA*YSAPTL
Trigger: GAGAGTCGGAGCTGAATACCAAGCTCGGATCCCTGA...CTGACAATACACTTCCTCGTGAGGCGTCTCTGACTGCTTAGTCATAAGGACATG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000192128.6
ENSMUST00000192491.6
CDS-3UTR CCA 90 bp TTTCTTCCCATGAGATCACAGTGGGCACTAGAAAGGAGGCCAAACAGAGGCCTCTGTCGTTTCCATCCATaGGGTGAGCTTCTTCTACGT +
Preference number: 4 (lower is better)
Translates to: FLPMRSQWALERRPNRGLCRFHP*GELLLR
Trigger: ACGTAGAAGAAGCTCACCCCATGGATGGAAACGACA...GAGGCCTCTGTTTGGCCTCCTTTCTAGTGCCCACTGTGATCTCATGGGAAGAAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073279.13
ENSMUST00000110849.10
CDS-3UTR CCA 90 bp GTTTGCCTTGTTTGGATCAGTCAGATGAGCACTGGTACAATGATAGGTGAGCCTGAGGCTGGTTCAGAGTaGCAATGGGGACTGTTGGTG +
Preference number: 4 (lower is better)
Translates to: VCLVWISQMSTGTMIGEPEAGSE*QWGLLV
Trigger: CACCAACAGTCCCCATTGCCACTCTGAACCAGCCTC...AGGCTCACCTATCATTGTACCAGTGCTCATCTGACTGATCCAAACAAGGCAAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073279.13
ENSMUST00000110849.10
CDS-3UTR GCA 90 bp TCAGTGCTCTTCCCTGACGGCACCTTAGAAGCACTTTGTGTCTCCTCCCCTAAAGAGACCACACAAGCATaGCTCCATTGTCTTTATCTG +
Preference number: 4 (lower is better)
Translates to: SVLFPDGTLEALCVSSPKETTQA*LHCLYL
Trigger: CAGATAAAGACAATGGAGGCATGCTTGTGTGGTCTC...TTTAGGGGAGGAGACACAAAGTGCTTCTAAGGTGCCGTCAGGGAAGAGCACTGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000192491.6
CDS-3UTR GCA 90 bp TCTTTGTGGGTGCTAATGACTTTGCATTGGAATAAAAAGGCCTTAAGCCTCTGTCAGGATGGTGTTGGCTaGGTTGGGGCTGCAGGAGAC +
Preference number: 4 (lower is better)
Translates to: SLWVLMTLHWNKKALSLCQDGVG*VGAAGD
Trigger: GTCTCCTGCAGCCCCAACGCAGCCAACACCATCCTG...ACAGAGGCTTAAGGCCTTTTTATTCCAATGCAAAGTCATTAGCACCCACAAAGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000073279.13
ENSMUST00000110849.10
CDS-3UTR GCA 90 bp GTAGAAATAATACACTTTCGCTCTGCTAGGACCAGAAGCTGGCATGTCCTTATGTGCACTGCTAGAAGCTaGTCCTCTGTGGTCCAACGG +
Preference number: 4 (lower is better)
Translates to: VEIIHFRSARTRSWHVLMCTARS*SSVVQR
Trigger: CCGTTGGACCACAGAGGAGCAGCTTCTAGCAGTGCA...CATAAGGACATGCCAGCTTCTGGTCCTAGCAGAGCGAAAGTGTATTATTTCTAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000192128.6
CDS-3UTR GCA 90 bp AGGACTAGTTTGCCTTGTTTGGATCAGTCAGATGAGCACTGGTACAATGATAGGAGCCTGTGGGGTCTGTaGCTTGCACTGCTAGAAGCT +
Preference number: 4 (lower is better)
Translates to: RTSLPCLDQSDEHWYNDRSLWGL*LALLEA
Trigger: AGCTTCTAGCAGTGCAAGGCACAGACCCCACAGGCT...CCTATCATTGTACCAGTGCTCATCTGACTGATCCAAACAAGGCAAACTAGTCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110849.10
CDS-3UTR CCA 90 bp GTTTGCCTTGTTTGGATCAGTCAGATGAGCACTGGTACAATGATAGGTGAGCCTTCAGGGATCCGAGCTTaGTATTCAGCTCCGACTCTC +
Preference number: 4 (lower is better)
Translates to: VCLVWISQMSTGTMIGEPSGIRA*YSAPTL
Trigger: GAGAGTCGGAGCTGAATACCAAGCTCGGATCCCTGA...AGGCTCACCTATCATTGTACCAGTGCTCATCTGACTGATCCAAACAAGGCAAAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073279.13
ENSMUST00000110849.10
ENSMUST00000192158.6
CDS-3UTR CCA 90 bp ACTTTTCTTCCCATGAGATCACAGTGGGCACTAGAAAGGAGGCCAAACAGAGGCGCTAGTTTACGAGCCTaGCGATCCATCAAACTTGTC +
Preference number: 4 (lower is better)
Translates to: TFLPMRSQWALERRPNRGASLRA*RSIKLV
Trigger: GACAAGTTTGATGGATCGCCAGGCTCGTAAACTAGC...GCCTCTGTTTGGCCTCCTTTCTAGTGCCCACTGTGATCTCATGGGAAGAAAAGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073279.13
ENSMUST00000110849.10
CDS-3UTR CCA 90 bp GAAGCCTGGGTTCCTTGTTCTGCTTCCCACTCCTGCAATACCTCCTCTAAGTTACCTGATTGTGTCTATTaGCTAGTTTACGAGCCTGGC +
Preference number: 4 (lower is better)
Translates to: EAWVPCSASHSCNTSSKLPDCVY*LVYEPG
Trigger: GCCAGGCTCGTAAACTAGCCAATAGACACAATCAGG...TAACTTAGAGGAGGTATTGCAGGAGTGGGAAGCAGAACAAGGAACCCAGGCTTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000192491.6
CDS-3UTR CCA 90 bp GAAGTGTATTGTCAGCCTTATGCTCATTTAGCTAGTCCTCACACACCCTCACAGGCCACCACGTCCTCCTaGGTTAGATACATGCCCTTA +
Preference number: 4 (lower is better)
Translates to: EVYCQPYAHLASPHTPSQATTSS*VRYMPL
Trigger: TAAGGGCATGTATCTAACCCAGGAGGACGTGGTGGC...CTGTGAGGGTGTGTGAGGACTAGCTAAATGAGCATAAGGCTGACAATACACTTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000192128.6
ENSMUST00000192491.6
CDS-3UTR TCA 90 bp GTTCCTTGTTCTGCTTCCCACTCCTGCAATACCTCCTCTAAGTTAAACCGACGCTCATCACTGTCACCCTaGTTGTGTCTATTGGCTAGT +
Preference number: 4 (lower is better)
Translates to: VPCSASHSCNTSSKLNRRSSLSP*LCLLAS
Trigger: ACTAGCCAATAGACACAATCAGGGTGACAGTGATGA...GCGTCGGTTTAACTTAGAGGAGGTATTGCAGGAGTGGGAAGCAGAACAAGGAAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000192491.6
CDS-3UTR TCA 90 bp TTTCGCTCTGCTAGGACCAGAAGCTGGCATGTCCTTATGACTAAGCAGTCAGAGTTGACTCAGGCGGTTTaGACTCTTCAATTCCACCTT +
Preference number: 4 (lower is better)
Translates to: FRSARTRSWHVLMTKQSELTQAV*TLQFHL
Trigger: AAGGTGGAATTGAAGAGTTCAAACCGCCTGAGTCAA...CTCTGACTGCTTAGTCATAAGGACATGCCAGCTTCTGGTCCTAGCAGAGCGAAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000192128.6
CDS-3UTR TCA 90 bp ACTTTTCTTCCCATGAGATCACAGTGGGCACTAGAAAGGAGGCCAAACAGAGGCCGGGCATTAATTTTCTaGTTTGACTCAGGCGGTTTG +
Preference number: 4 (lower is better)
Translates to: TFLPMRSQWALERRPNRGRALIF*FDSGGL
Trigger: CAAACCGCCTGAGTCAAATCAGAAAATTAATGCCCG...GCCTCTGTTTGGCCTCCTTTCTAGTGCCCACTGTGATCTCATGGGAAGAAAAGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000110849.10
CDS-3UTR GCA 90 bp ACTTTTCTTCCCATGAGATCACAGTGGGCACTAGAAAGGAGGCCAAACAGAGGCGAGACCACACAAGCATaGCTCCATTGTCTTTATCTG +
Preference number: 4 (lower is better)
Translates to: TFLPMRSQWALERRPNRGETTQA*LHCLYL
Trigger: CAGATAAAGACAATGGAGGCATGCTTGTGTGGTCTC...GCCTCTGTTTGGCCTCCTTTCTAGTGCCCACTGTGATCTCATGGGAAGAAAAGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073279.13
ENSMUST00000110849.10
ENSMUST00000192158.6
CDS-3UTR GCA 90 bp TTTCGCTCTGCTAGGACCAGAAGCTGGCATGTCCTTATGACTAAGCAGTCAGAGGAGACCACACAAGCATaGCTCCATTGTCTTTATCTG +
Preference number: 4 (lower is better)
Translates to: FRSARTRSWHVLMTKQSEETTQA*LHCLYL
Trigger: CAGATAAAGACAATGGAGGCATGCTTGTGTGGTCTC...CTCTGACTGCTTAGTCATAAGGACATGCCAGCTTCTGGTCCTAGCAGAGCGAAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000192128.6
ENSMUST00000192491.6
CDS-3UTR GCA 90 bp GGCGGCTCCTCAGCTCAGATTAGCTCAGATTCCAGACACAAACACACCTCCGCTGCCATGTTTCTCTTTTaGAATGGCGATATATTCATC +
Preference number: 4 (lower is better)
Translates to: GGSSAQISSDSRHKHTSAAMFLF*NGDIFI
Trigger: GATGAATATATCGCCATTGCAAAAGAGAAACATGGC...AGCGGAGGTGTGTTTGTGTCTGGAATCTGAGCTAATCTGAGCTGAGGAGCCGCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000192491.6
CDS-3UTR GCA 90 bp CACTTTCGCTCTGCTAGGACCAGAAGCTGGCATGTCCTTATGACTAAGCAGTCATATGCCAGAACAACATaGCAAGCGCCTGTTCAACAT +
Preference number: 4 (lower is better)
Translates to: HFRSARTRSWHVLMTKQSYARTT*QAPVQH
Trigger: ATGTTGAACAGGCGCTTGGCATGTTGTTCTGGCATA...TGACTGCTTAGTCATAAGGACATGCCAGCTTCTGGTCCTAGCAGAGCGAAAGTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000192128.6
ENSMUST00000192491.6
CDS-3UTR GCA 90 bp GTCTCCTCCCCTAAAGCAGAAGCATCAGCATTAGAAGCCTGGGTTCCTTGTTCTTATGCCAGAACAACATaGCAAGCGCCTGTTCAACAT +
Preference number: 4 (lower is better)
Translates to: VSSPKAEASALEAWVPCSYARTT*QAPVQH
Trigger: ATGTTGAACAGGCGCTTGGCATGTTGTTCTGGCATA...AGAACAAGGAACCCAGGCTTCTAATGCTGATGCTTCTGCTTTAGGGGAGGAGAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000192491.6
CDS-3UTR GCA 90 bp GGAAGGACTAGTTTGCCTTGTTTGGATCAGTCAGATGAGCACTGGTACAATGATAGCTCCATGTCCAGTTaGCTCAGGATGGTGTTGGCT +
Preference number: 4 (lower is better)
Translates to: GRTSLPCLDQSDEHWYNDSSMSS*LRMVLA
Trigger: AGCCAACACCATCCTGAGGCAACTGGACATGGAGCT...ATCATTGTACCAGTGCTCATCTGACTGATCCAAACAAGGCAAACTAGTCCTTCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073279.13
ENSMUST00000110849.10
CDS-3UTR GCA 90 bp AAGCAGTCAGAGACGCCTCACGAGGAAGTGTATTGTCAGCCTTATGCTCATTTATATTTGCGGACACCTTaGACTGCTAGAAGCTGCTCC +
Preference number: 4 (lower is better)
Translates to: KQSETPHEEVYCQPYAHLYLRTP*TARSCS
Trigger: GGAGCAGCTTCTAGCAGTGCAAGGTGTCCGCAAATA...TAAATGAGCATAAGGCTGACAATACACTTCCTCGTGAGGCGTCTCTGACTGCTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000192128.6
CDS-3UTR CCA 90 bp CCTTTGTCCAGCGTAATTAGTGCAGTGAAGGCTGTGAATCTGTCTGAATCCCAAGTACTTGGTAGCACCTaGATCGAATTCAGGGATCCG +
Preference number: 4 (lower is better)
Translates to: PLSSVISAVKAVNLSESQVLGST*IEFRDP
Trigger: CGGATCCCTGAATTCGATCCAGGTGCTACCAAGTAC...TTGGGATTCAGACAGATTCACAGCCTTCACTGCACTAATTACGCTGGACAAAGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000110849.10
ENSMUST00000192158.6
CDS-3UTR CCA 90 bp ATACACTTTCGCTCTGCTAGGACCAGAAGCTGGCATGTCCTTATGACTAAGCAGGCTAGTTTACGAGCCTaGCGATCCATCAAACTTGTC +
Preference number: 4 (lower is better)
Translates to: IHFRSARTRSWHVLMTKQASLRA*RSIKLV
Trigger: GACAAGTTTGATGGATCGCCAGGCTCGTAAACTAGC...CTGCTTAGTCATAAGGACATGCCAGCTTCTGGTCCTAGCAGAGCGAAAGTGTAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000192128.6
ENSMUST00000192491.6
CDS-3UTR CCA 90 bp TGGGTTCCTTGTTCTGCTTCCCACTCCTGCAATACCTCCTCTAAGTTAAACCGAGCTAGTTTACGAGCCTaGCGATCCATCAAACTTGTC +
Preference number: 4 (lower is better)
Translates to: WVPCSASHSCNTSSKLNRASLRA*RSIKLV
Trigger: GACAAGTTTGATGGATCGCCAGGCTCGTAAACTAGC...TCGGTTTAACTTAGAGGAGGTATTGCAGGAGTGGGAAGCAGAACAAGGAACCCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000192491.6
CDS-3UTR CCA 90 bp ACATCTCCCACAGACTGTACTGCAGGTCTACTGACGAGAGACAAGACGATGAAACCTGATTGTGTCTATTaGCTAGTTTACGAGCCTGGC +
Preference number: 4 (lower is better)
Translates to: TSPTDCTAGLLTRDKTMKPDCVY*LVYEPG
Trigger: GCCAGGCTCGTAAACTAGCCAATAGACACAATCAGG...TTTCATCGTCTTGTCTCTCGTCAGTAGACCTGCAGTACAGTCTGTGGGAGATGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073279.13
ENSMUST00000110849.10
CDS-3UTR CCA 90 bp CATGTCCTTATGACTAAGCAGTCAGAGACGCCTCACGAGGAAGTGTATTGTCAGTGTCGTTTCCATCCATaGGGTGAGCTTCTTCTACGT +
Preference number: 4 (lower is better)
Translates to: HVLMTKQSETPHEEVYCQCRFHP*GELLLR
Trigger: ACGTAGAAGAAGCTCACCCCATGGATGGAAACGACA...CTGACAATACACTTCCTCGTGAGGCGTCTCTGACTGCTTAGTCATAAGGACATG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000192128.6
ENSMUST00000192491.6
CDS-3UTR CCA 90 bp AAATCAAACCACAAGCTCAGGTTGGTTGAAAGGATCATACAAATGTATTCAGATAGTCCGAGGAGCCTGTaGGGTCTGTGCCTCAGGCGG +
Preference number: 4 (lower is better)
Translates to: KSNHKLRLVERIIQMYSDSPRSL*GLCLRR
Trigger: CCGCCTGAGGCACAGACCCCACAGGCTCCTCGGACT...ATCTGAATACATTTGTATGATCCTTTCAACCAACCTGAGCTTGTGGTTTGATTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000073279.13
CDS-3UTR CCA 90 bp AGCTCAGGTTGGTTGAAAGGATCATACAAATGTATTCAGATGTTCAACAGAGATAGAGTTGGCCGGGGCTaGATGAACCGAGCCTGCTGC +
Preference number: 4 (lower is better)
Translates to: SSGWLKGSYKCIQMFNRDRVGRG*MNRACC
Trigger: GCAGCAGGCTCGGTTCATCCAGCCCCGGCCAACTCT...ATCTCTGTTGAACATCTGAATACATTTGTATGATCCTTTCAACCAACCTGAGCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073279.13
ENSMUST00000110849.10
CDS-3UTR CCA 90 bp GAGACGCCTCACGAGGAAGTGTATTGTCAGCCTTATGCTCATTTAGCTAGTCCTTCAGCATTAGAAGCCTaGGTTCCTTGTTCTGCTTCC +
Preference number: 4 (lower is better)
Translates to: ETPHEEVYCQPYAHLASPSALEA*VPCSAS
Trigger: GGAAGCAGAACAAGGAACCCAGGCTTCTAATGCTGA...AGGACTAGCTAAATGAGCATAAGGCTGACAATACACTTCCTCGTGAGGCGTCTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000192128.6
CDS-3UTR GCA 90 bp GTTCCTTGTTCTGCTTCCCACTCCTGCAATACCTCCTCTAAGTTAAACCGACGCAATCTTTACCATATTTaGGGACACCTCAGGCGGTTT +
Preference number: 4 (lower is better)
Translates to: VPCSASHSCNTSSKLNRRNLYHI*GHLRRF
Trigger: AAACCGCCTGAGGTGTCCGCAAATATGGTAAAGATT...GCGTCGGTTTAACTTAGAGGAGGTATTGCAGGAGTGGGAAGCAGAACAAGGAAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000192222.6
ENSMUST00000192491.6
CDS-3UTR GCA 90 bp CTAAGCAGTCAGAGACGCCTCACGAGGAAGTGTATTGTCAGCCTTATGCTCATTTCTGCTTCCCACTCCTaGAATACCTCCTCTAAGTTA +
Preference number: 4 (lower is better)
Translates to: LSSQRRLTRKCIVSLMLISASHS*NTSSKL
Trigger: TAACTTAGAGGAGGTATTGCAGGAGTGGGAAGCAGA...AATGAGCATAAGGCTGACAATACACTTCCTCGTGAGGCGTCTCTGACTGCTTAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000192128.6
CDS-3UTR CCA 90 bp TTAACAGTAGAAATAATACACTTTCGCTCTGCTAGGACCAGAAGCTGGCATGTCTCAGGGATCCGAGCTTaGTATTCAGCTCCGACTCTC +
Preference number: 4 (lower is better)
Translates to: LTVEIIHFRSARTRSWHVSGIRA*YSAPTL
Trigger: GAGAGTCGGAGCTGAATACCAAGCTCGGATCCCTGA...GACATGCCAGCTTCTGGTCCTAGCAGAGCGAAAGTGTATTATTTCTACTGTTAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000192128.6
ENSMUST00000192491.6
CDS-3UTR CCA 90 bp GTTTGCCTTGTTTGGATCAGTCAGATGAGCACTGGTACAATGATAGGTGAGCCTCCTGATTGTGTCTATTaGCTAGTTTACGAGCCTGGC +
Preference number: 4 (lower is better)
Translates to: VCLVWISQMSTGTMIGEPPDCVY*LVYEPG
Trigger: GCCAGGCTCGTAAACTAGCCAATAGACACAATCAGG...AGGCTCACCTATCATTGTACCAGTGCTCATCTGACTGATCCAAACAAGGCAAAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073279.13
ENSMUST00000110849.10
CDS-3UTR CCA 90 bp CCTTTGTCCAGCGTAATTAGTGCAGTGAAGGCTGTGAATCTGTCTGAATCCCAATGTCGTTTCCATCCATaGGGTGAGCTTCTTCTACGT +
Preference number: 4 (lower is better)
Translates to: PLSSVISAVKAVNLSESQCRFHP*GELLLR
Trigger: ACGTAGAAGAAGCTCACCCCATGGATGGAAACGACA...TTGGGATTCAGACAGATTCACAGCCTTCACTGCACTAATTACGCTGGACAAAGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110849.10
CDS-3UTR CCA 90 bp CATGTCCTTATGACTAAGCAGTCAGAGACGCCTCACGAGGAAGTGTATTGTCAGCGTTACCCTCTCTTTTaGCTTCTTTCTTTGGGTCGT +
Preference number: 4 (lower is better)
Translates to: HVLMTKQSETPHEEVYCQRYPLF*LLSLGR
Trigger: ACGACCCAAAGAAAGAAGCCAAAAGAGAGGGTAACG...CTGACAATACACTTCCTCGTGAGGCGTCTCTGACTGCTTAGTCATAAGGACATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000192128.6
ENSMUST00000192491.6
CDS-3UTR CCA 90 bp ATGACTAAGCAGTCAGAGACGCCTCACGAGGAAGTGTATTGTCAGCCTTATGCTCGTTACCCTCTCTTTTaGCTTCTTTCTTTGGGTCGT +
Preference number: 4 (lower is better)
Translates to: MTKQSETPHEEVYCQPYARYPLF*LLSLGR
Trigger: ACGACCCAAAGAAAGAAGCCAAAAGAGAGGGTAACG...AGCATAAGGCTGACAATACACTTCCTCGTGAGGCGTCTCTGACTGCTTAGTCAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000192128.6
ENSMUST00000192491.6
CDS-3UTR CCA 90 bp AAAACCAAACCAAACCAAACACTCTTTGTATCAAACACAGATCCTCTTAGTGAGCCAGTTGCCTCAGGATaGTGTTGGCTGCGTTGGGGC +
Preference number: 4 (lower is better)
Translates to: KTKPNQTLFVSNTDPLSEPVASG*CWLRWG
Trigger: GCCCCAACGCAGCCAACACCATCCTGAGGCAACTGG...CTCACTAAGAGGATCTGTGTTTGATACAAAGAGTGTTTGGTTTGGTTTGGTTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000073279.13
ENSMUST00000110849.10
CDS-3UTR CCA 90 bp GAAGGACTAGTTTGCCTTGTTTGGATCAGTCAGATGAGCACTGGTACAATGATAGGTTCAGAGTGGCAATaGGGACTGTTGGTGTTGGAG +
Preference number: 4 (lower is better)
Translates to: EGLVCLVWISQMSTGTMIGSEWQ*GLLVLE
Trigger: CTCCAACACCAACAGTCCCCATTGCCACTCTGAACC...TATCATTGTACCAGTGCTCATCTGACTGATCCAAACAAGGCAAACTAGTCCTTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073279.13
ENSMUST00000110849.10
CDS-3UTR TCA 90 bp GTTTGCCTTGTTTGGATCAGTCAGATGAGCACTGGTACAATGATAGGTGAGCCTTTGACTCAGGCGGTTTaGACTCTTCAATTCCACCTT +
Preference number: 4 (lower is better)
Translates to: VCLVWISQMSTGTMIGEPLTQAV*TLQFHL
Trigger: AAGGTGGAATTGAAGAGTTCAAACCGCCTGAGTCAA...AGGCTCACCTATCATTGTACCAGTGCTCATCTGACTGATCCAAACAAGGCAAAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110849.10
CDS-3UTR GCA 90 bp TTTCTTCCCATGAGATCACAGTGGGCACTAGAAAGGAGGCCAAACAGAGGCCTCGCCATGTTTCTCTTTTaGAATGGCGATATATTCATC +
Preference number: 4 (lower is better)
Translates to: FLPMRSQWALERRPNRGLAMFLF*NGDIFI
Trigger: GATGAATATATCGCCATTGCAAAAGAGAAACATGGC...GAGGCCTCTGTTTGGCCTCCTTTCTAGTGCCCACTGTGATCTCATGGGAAGAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073279.13
ENSMUST00000110849.10
CDS-3UTR GCA 90 bp GTCTCCTCCCCTAAAGCAGAAGCATCAGCATTAGAAGCCTGGGTTCCTTGTTCTTCAATGTTGTGTTTATaGCAGAACAACATGCCAAGC +
Preference number: 4 (lower is better)
Translates to: VSSPKAEASALEAWVPCSSMLCL*QNNMPS
Trigger: GCTTGGCATGTTGTTCTGGCATAAACACAACATTGA...AGAACAAGGAACCCAGGCTTCTAATGCTGATGCTTCTGCTTTAGGGGAGGAGAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000192491.6
CDS-3UTR GCA 90 bp TCTTTGTGGGTGCTAATGACTTTGCATTGGAATAAAAAGGCCTTAAGCCTCTGTAGCTCCATGTCCAGTTaGCTCAGGATGGTGTTGGCT +
Preference number: 4 (lower is better)
Translates to: SLWVLMTLHWNKKALSLCSSMSS*LRMVLA
Trigger: AGCCAACACCATCCTGAGGCAACTGGACATGGAGCT...ACAGAGGCTTAAGGCCTTTTTATTCCAATGCAAAGTCATTAGCACCCACAAAGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000073279.13
ENSMUST00000110849.10
CDS-3UTR GCA 90 bp AGCTCAGGTTGGTTGAAAGGATCATACAAATGTATTCAGATGTTCAACAGAGATTGGATGAACCGAGCCTaGTGCTGGAGTGGAGGAGGT +
Preference number: 4 (lower is better)
Translates to: SSGWLKGSYKCIQMFNRDWMNRA*CWSGGG
Trigger: ACCTCCTCCACTCCAGCAGCAGGCTCGGTTCATCCA...ATCTCTGTTGAACATCTGAATACATTTGTATGATCCTTTCAACCAACCTGAGCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073279.13
ENSMUST00000110849.10
CDS-3UTR GCA 90 bp AAAACCAAACCAAACCAAACACTCTTTGTATCAAACACAGATCCTCTTAGTGAGGTGGGGTCTGTGCCTTaGACTGCTAGAAGCTGCTCC +
Preference number: 4 (lower is better)
Translates to: KTKPNQTLFVSNTDPLSEVGSVP*TARSCS
Trigger: GGAGCAGCTTCTAGCAGTGCAAGGCACAGACCCCAC...CTCACTAAGAGGATCTGTGTTTGATACAAAGAGTGTTTGGTTTGGTTTGGTTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000110849.10
CDS-3UTR CCA 90 bp TTGTGGGTGCTAATGACTTTGCATTGGAATAAAAAGGCCTTAAGCCTCTGTTTCGCCACCACGTCCTCCTaGGTTAGATACATGCCCTTA +
Preference number: 4 (lower is better)
Translates to: LWVLMTLHWNKKALSLCFATTSS*VRYMPL
Trigger: TAAGGGCATGTATCTAACCCAGGAGGACGTGGTGGC...GAAACAGAGGCTTAAGGCCTTTTTATTCCAATGCAAAGTCATTAGCACCCACAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000073279.13
ENSMUST00000110849.10
CDS-3UTR CCA 90 bp AAAACCAAACCAAACCAAACACTCTTTGTATCAAACACAGATCCTCTTAGTGAGAGGCTGATTGAGAGTTaGCCGGGGCTGGATGAACCG +
Preference number: 4 (lower is better)
Translates to: KTKPNQTLFVSNTDPLSERLIES*PGLDEP
Trigger: CGGTTCATCCAGCCCCGGCCAACTCTCAATCAGCCT...CTCACTAAGAGGATCTGTGTTTGATACAAAGAGTGTTTGGTTTGGTTTGGTTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000073279.13
ENSMUST00000110849.10
CDS-3UTR TCA 90 bp GGAAGGACTAGTTTGCCTTGTTTGGATCAGTCAGATGAGCACTGGTACAATGATTCATCACTGTCACCCTaGTTGTGTCTATTGGCTAGT +
Preference number: 4 (lower is better)
Translates to: GRTSLPCLDQSDEHWYNDSSLSP*LCLLAS
Trigger: ACTAGCCAATAGACACAATCAGGGTGACAGTGATGA...ATCATTGTACCAGTGCTCATCTGACTGATCCAAACAAGGCAAACTAGTCCTTCC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073279.13
ENSMUST00000110849.10
CDS-3UTR GCA 90 bp GGAAGGACTAGTTTGCCTTGTTTGGATCAGTCAGATGAGCACTGGTACAATGATGAGACCACACAAGCATaGCTCCATTGTCTTTATCTG +
Preference number: 4 (lower is better)
Translates to: GRTSLPCLDQSDEHWYNDETTQA*LHCLYL
Trigger: CAGATAAAGACAATGGAGGCATGCTTGTGTGGTCTC...ATCATTGTACCAGTGCTCATCTGACTGATCCAAACAAGGCAAACTAGTCCTTCC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073279.13
ENSMUST00000110849.10
ENSMUST00000192158.6
CDS-3UTR GCA 90 bp AGACTGTACTGCAGGTCTACTGACGAGAGACAAGACGATGAAAGCTGTCACGGTGCCATGTTTCTCTTTTaGAATGGCGATATATTCATC +
Preference number: 4 (lower is better)
Translates to: RLYCRSTDERQDDESCHGAMFLF*NGDIFI
Trigger: GATGAATATATCGCCATTGCAAAAGAGAAACATGGC...ACCGTGACAGCTTTCATCGTCTTGTCTCTCGTCAGTAGACCTGCAGTACAGTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073279.13
ENSMUST00000110849.10
CDS-3UTR GCA 90 bp ATACACTTTCGCTCTGCTAGGACCAGAAGCTGGCATGTCCTTATGACTAAGCAGTCAATGTTGTGTTTATaGCAGAACAACATGCCAAGC +
Preference number: 4 (lower is better)
Translates to: IHFRSARTRSWHVLMTKQSMLCL*QNNMPS
Trigger: GCTTGGCATGTTGTTCTGGCATAAACACAACATTGA...CTGCTTAGTCATAAGGACATGCCAGCTTCTGGTCCTAGCAGAGCGAAAGTGTAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000192128.6
ENSMUST00000192491.6
CDS-3UTR GCA 90 bp GAAGCCTGGGTTCCTTGTTCTGCTTCCCACTCCTGCAATACCTCCTCTAAGTTACATTTTCTGCTTAAGTaGACTGTTTACTTGCTTAGC +
Preference number: 4 (lower is better)
Translates to: EAWVPCSASHSCNTSSKLHFLLK*TVYLLS
Trigger: GCTAAGCAAGTAAACAGTGCACTTAAGCAGAAAATG...TAACTTAGAGGAGGTATTGCAGGAGTGGGAAGCAGAACAAGGAACCCAGGCTTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000192222.6
ENSMUST00000192491.6
CDS-3UTR GCA 90 bp AGCTCAGGTTGGTTGAAAGGATCATACAAATGTATTCAGATGTTCAACAGAGATTGCACTGCTAGAAGCTaGTCCTCTGTGGTCCAACGG +
Preference number: 4 (lower is better)
Translates to: SSGWLKGSYKCIQMFNRDCTARS*SSVVQR
Trigger: CCGTTGGACCACAGAGGAGCAGCTTCTAGCAGTGCA...ATCTCTGTTGAACATCTGAATACATTTGTATGATCCTTTCAACCAACCTGAGCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110849.10
CDS-3UTR GCA 90 bp GAAGTGTATTGTCAGCCTTATGCTCATTTAGCTAGTCCTCACACACCCTCACAGAATCTTTACCATATTTaGGGACACCTCAGGCGGTTT +
Preference number: 4 (lower is better)
Translates to: EVYCQPYAHLASPHTPSQNLYHI*GHLRRF
Trigger: AAACCGCCTGAGGTGTCCGCAAATATGGTAAAGATT...CTGTGAGGGTGTGTGAGGACTAGCTAAATGAGCATAAGGCTGACAATACACTTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000192491.6
CDS-3UTR CCA 90 bp CAGCCTTATGCTCATTTAGCTAGTCCTCACACACCCTCACAGCACACCACCAGATATATTCATCCAATTTaGCATCTGGGATACTGTGAT +
Preference number: 4 (lower is better)
Translates to: QPYAHLASPHTPSQHTTRYIHPI*HLGYCD
Trigger: ATCACAGTATCCCAGATGCCAAATTGGATGAATATA...TCTGGTGGTGTGCTGTGAGGGTGTGTGAGGACTAGCTAAATGAGCATAAGGCTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000192128.6
ENSMUST00000192491.6
CDS-3UTR CCA 90 bp TTAACAGTAGAAATAATACACTTTCGCTCTGCTAGGACCAGAAGCTGGCATGTCTGTCGTTTCCATCCATaGGGTGAGCTTCTTCTACGT +
Preference number: 4 (lower is better)
Translates to: LTVEIIHFRSARTRSWHVCRFHP*GELLLR
Trigger: ACGTAGAAGAAGCTCACCCCATGGATGGAAACGACA...GACATGCCAGCTTCTGGTCCTAGCAGAGCGAAAGTGTATTATTTCTACTGTTAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000192128.6
ENSMUST00000192491.6
CDS-3UTR CCA 90 bp TTGTGGGTGCTAATGACTTTGCATTGGAATAAAAAGGCCTTAAGCCTCTGTTTCTGTTGGACGAAGAAGTaGTGGAGGCTGGTTCAGAGT +
Preference number: 4 (lower is better)
Translates to: LWVLMTLHWNKKALSLCFCWTKK*WRLVQS
Trigger: ACTCTGAACCAGCCTCCACCACTTCTTCGTCCAACA...GAAACAGAGGCTTAAGGCCTTTTTATTCCAATGCAAAGTCATTAGCACCCACAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000073279.13
ENSMUST00000110849.10
CDS-3UTR TCA 90 bp TTAACAGTAGAAATAATACACTTTCGCTCTGCTAGGACCAGAAGCTGGCATGTCCGGGCATTAATTTTCTaGTTTGACTCAGGCGGTTTG +
Preference number: 4 (lower is better)
Translates to: LTVEIIHFRSARTRSWHVRALIF*FDSGGL
Trigger: CAAACCGCCTGAGTCAAATCAGAAAATTAATGCCCG...GACATGCCAGCTTCTGGTCCTAGCAGAGCGAAAGTGTATTATTTCTACTGTTAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000192128.6
CDS-3UTR GCA 90 bp CATGTCCTTATGACTAAGCAGTCAGAGACGCCTCACGAGGAAGTGTATTGTCAGGCCATGTTTCTCTTTTaGAATGGCGATATATTCATC +
Preference number: 4 (lower is better)
Translates to: HVLMTKQSETPHEEVYCQAMFLF*NGDIFI
Trigger: GATGAATATATCGCCATTGCAAAAGAGAAACATGGC...CTGACAATACACTTCCTCGTGAGGCGTCTCTGACTGCTTAGTCATAAGGACATG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000192128.6
ENSMUST00000192491.6
CDS-3UTR GCA 90 bp CATCCCTCAGATACAGCACCTAAGCCACAGATACTGAACATCTGGACAGATGCTCATTTTCTGCTTAAGTaGACTGTTTACTTGCTTAGC +
Preference number: 4 (lower is better)
Translates to: HPSDTAPKPQILNIWTDAHFLLK*TVYLLS
Trigger: GCTAAGCAAGTAAACAGTGCACTTAAGCAGAAAATG...AGCATCTGTCCAGATGTTCAGTATCTGTGGCTTAGGTGCTGTATCTGAGGGATG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073279.13
ENSMUST00000110849.10
CDS-3UTR GCA 90 bp TATTGTCAGCCTTATGCTCATTTAGCTAGTCCTCACACACCCTCACAGCACACCCATTTTCTGCTTAAGTaGACTGTTTACTTGCTTAGC +
Preference number: 4 (lower is better)
Translates to: YCQPYAHLASPHTPSQHTHFLLK*TVYLLS
Trigger: GCTAAGCAAGTAAACAGTGCACTTAAGCAGAAAATG...GGTGTGCTGTGAGGGTGTGTGAGGACTAGCTAAATGAGCATAAGGCTGACAATA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000192128.6
ENSMUST00000192491.6
CDS-3UTR GCA 90 bp ATACACTTTCGCTCTGCTAGGACCAGAAGCTGGCATGTCCTTATGACTAAGCAGCATTTTCTGCTTAAGTaGACTGTTTACTTGCTTAGC +
Preference number: 4 (lower is better)
Translates to: IHFRSARTRSWHVLMTKQHFLLK*TVYLLS
Trigger: GCTAAGCAAGTAAACAGTGCACTTAAGCAGAAAATG...CTGCTTAGTCATAAGGACATGCCAGCTTCTGGTCCTAGCAGAGCGAAAGTGTAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000192128.6
ENSMUST00000192491.6
CDS-3UTR GCA 90 bp ACTTTGCATTGGAATAAAAAGGCCTTAAGCCTCTGTTTCTTCATAAAAACGATCATGAACCGAGCCTGCTaGTGGAGTGGAGGAGGTTGT +
Preference number: 4 (lower is better)
Translates to: TLHWNKKALSLCFFIKTIMNRAC*WSGGGC
Trigger: ACAACCTCCTCCACTCCAGCAGCAGGCTCGGTTCAT...GATCGTTTTTATGAAGAAACAGAGGCTTAAGGCCTTTTTATTCCAATGCAAAGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000073279.13
ENSMUST00000110849.10
CDS-3UTR CCA 90 bp CTAAATCAAACCACAAGCTCAGGTTGGTTGAAAGGATCATACAAATGTATTCAGTCAGGGATCCGAGCTTaGTATTCAGCTCCGACTCTC +
Preference number: 4 (lower is better)
Translates to: LNQTTSSGWLKGSYKCIQSGIRA*YSAPTL
Trigger: GAGAGTCGGAGCTGAATACCAAGCTCGGATCCCTGA...CTGAATACATTTGTATGATCCTTTCAACCAACCTGAGCTTGTGGTTTGATTTAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073279.13
ENSMUST00000110849.10
ENSMUST00000192158.6
CDS-3UTR CCA 90 bp TTTTCTTCCCATGAGATCACAGTGGGCACTAGAAAGGAGGCCAAACAGAGGCCTTATATTCATCCAATTTaGCATCTGGGATACTGTGAT +
Preference number: 4 (lower is better)
Translates to: FSSHEITVGTRKEAKQRPYIHPI*HLGYCD
Trigger: ATCACAGTATCCCAGATGCCAAATTGGATGAATATA...AGGCCTCTGTTTGGCCTCCTTTCTAGTGCCCACTGTGATCTCATGGGAAGAAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073279.13
ENSMUST00000110849.10
CDS-3UTR CCA 90 bp GAAGCCTGGGTTCCTTGTTCTGCTTCCCACTCCTGCAATACCTCCTCTAAGTTATATATTCATCCAATTTaGCATCTGGGATACTGTGAT +
Preference number: 4 (lower is better)
Translates to: EAWVPCSASHSCNTSSKLYIHPI*HLGYCD
Trigger: ATCACAGTATCCCAGATGCCAAATTGGATGAATATA...TAACTTAGAGGAGGTATTGCAGGAGTGGGAAGCAGAACAAGGAACCCAGGCTTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000192491.6
CDS-3UTR CCA 90 bp GAGACGCCTCACGAGGAAGTGTATTGTCAGCCTTATGCTCATTTAGCTAGTCCTTGCAATTGTCTTATCTaGAAGCATTTGCTGAATCCT +
Preference number: 4 (lower is better)
Translates to: ETPHEEVYCQPYAHLASPCNCLI*KHLLNP
Trigger: AGGATTCAGCAAATGCTTCCAGATAAGACAATTGCA...AGGACTAGCTAAATGAGCATAAGGCTGACAATACACTTCCTCGTGAGGCGTCTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000192128.6
ENSMUST00000192491.6
CDS-3UTR CCA 90 bp AGCTCAGGTTGGTTGAAAGGATCATACAAATGTATTCAGATGTTCAACAGAGATGGTTCAGAGTGGCAATaGGGACTGTTGGTGTTGGAG +
Preference number: 4 (lower is better)
Translates to: SSGWLKGSYKCIQMFNRDGSEWQ*GLLVLE
Trigger: CTCCAACACCAACAGTCCCCATTGCCACTCTGAACC...ATCTCTGTTGAACATCTGAATACATTTGTATGATCCTTTCAACCAACCTGAGCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073279.13
ENSMUST00000110849.10
CDS-3UTR TCA 90 bp CTAAATCAAACCACAAGCTCAGGTTGGTTGAAAGGATCATACAAATGTATTCAGGTGCCTCAGGCGGTTTaGACTCTTCAATTCCACCTT +
Preference number: 4 (lower is better)
Translates to: LNQTTSSGWLKGSYKCIQVPQAV*TLQFHL
Trigger: AAGGTGGAATTGAAGAGTTCAAACCGCCTGAGGCAC...CTGAATACATTTGTATGATCCTTTCAACCAACCTGAGCTTGTGGTTTGATTTAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000073279.13
CDS-3UTR CCA 90 bp AAATCAAACCACAAGCTCAGGTTGGTTGAAAGGATCATACAAATGTATTCAGATGTACTTGGTAGCACCTaGATCGAATTCAGGGATCCG +
Preference number: 4 (lower is better)
Translates to: KSNHKLRLVERIIQMYSDVLGST*IEFRDP
Trigger: CGGATCCCTGAATTCGATCCAGGTGCTACCAAGTAC...ATCTGAATACATTTGTATGATCCTTTCAACCAACCTGAGCTTGTGGTTTGATTT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073279.13
ENSMUST00000110849.10
ENSMUST00000192158.6
CDS-3UTR CCA 90 bp GGAAGGACTAGTTTGCCTTGTTTGGATCAGTCAGATGAGCACTGGTACAATGATTGCAATTGTCTTATCTaGAAGCATTTGCTGAATCCT +
Preference number: 4 (lower is better)
Translates to: GRTSLPCLDQSDEHWYNDCNCLI*KHLLNP
Trigger: AGGATTCAGCAAATGCTTCCAGATAAGACAATTGCA...ATCATTGTACCAGTGCTCATCTGACTGATCCAAACAAGGCAAACTAGTCCTTCC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073279.13
ENSMUST00000110849.10
CDS-3UTR CCA 90 bp GTAAACAGCTTAACAGTAGAAATAATACACTTTCGCTCTGCTAGGACCAGAAGCAAGAAGTTCTTCACTTaGCCAACAGTCTTGTTGCCA +
Preference number: 4 (lower is better)
Translates to: VNSLTVEIIHFRSARTRSKKFFT*PTVLLP
Trigger: TGGCAACAAGACTGTTGGCCAAGTGAAGAACTTCTT...GCTTCTGGTCCTAGCAGAGCGAAAGTGTATTATTTCTACTGTTAAGCTGTTTAC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000192128.6
CDS-3UTR GCA 90 bp TTGTGGGTGCTAATGACTTTGCATTGGAATAAAAAGGCCTTAAGCCTCTGTTTCTCAATGTTGTGTTTATaGCAGAACAACATGCCAAGC +
Preference number: 4 (lower is better)
Translates to: LWVLMTLHWNKKALSLCFSMLCL*QNNMPS
Trigger: GCTTGGCATGTTGTTCTGGCATAAACACAACATTGA...GAAACAGAGGCTTAAGGCCTTTTTATTCCAATGCAAAGTCATTAGCACCCACAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000073279.13
ENSMUST00000110849.10
CDS-3UTR GCA 90 bp GTAAACAGCTTAACAGTAGAAATAATACACTTTCGCTCTGCTAGGACCAGAAGCAATCTTTACCATATTTaGGGACACCTTGCACTGCTA +
Preference number: 4 (lower is better)
Translates to: VNSLTVEIIHFRSARTRSNLYHI*GHLALL
Trigger: TAGCAGTGCAAGGTGTCCGCAAATATGGTAAAGATT...GCTTCTGGTCCTAGCAGAGCGAAAGTGTATTATTTCTACTGTTAAGCTGTTTAC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000192128.6
CDS-3UTR CCA 90 bp GAAGGACTAGTTTGCCTTGTTTGGATCAGTCAGATGAGCACTGGTACAATGATATGCAATTGTCTTATCTaGAAGCATTTGCTGAATCCT +
Preference number: 4 (lower is better)
Translates to: EGLVCLVWISQMSTGTMICNCLI*KHLLNP
Trigger: AGGATTCAGCAAATGCTTCCAGATAAGACAATTGCA...TATCATTGTACCAGTGCTCATCTGACTGATCCAAACAAGGCAAACTAGTCCTTC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073279.13
ENSMUST00000110849.10
CDS-3UTR GCA 90 bp AAATCAAACCACAAGCTCAGGTTGGTTGAAAGGATCATACAAATGTATTCAGATGAGACCACACAAGCATaGCTCCATTGTCTTTATCTG +
Preference number: 4 (lower is better)
Translates to: KSNHKLRLVERIIQMYSDETTQA*LHCLYL
Trigger: CAGATAAAGACAATGGAGGCATGCTTGTGTGGTCTC...ATCTGAATACATTTGTATGATCCTTTCAACCAACCTGAGCTTGTGGTTTGATTT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073279.13
ENSMUST00000110849.10
ENSMUST00000192158.6
CDS-3UTR GCA 90 bp ACTTTGCATTGGAATAAAAAGGCCTTAAGCCTCTGTTTCTTCATAAAAACGATCTATGCCAGAACAACATaGCAAGCGCCTGTTCAACAT +
Preference number: 4 (lower is better)
Translates to: TLHWNKKALSLCFFIKTIYARTT*QAPVQH
Trigger: ATGTTGAACAGGCGCTTGGCATGTTGTTCTGGCATA...GATCGTTTTTATGAAGAAACAGAGGCTTAAGGCCTTTTTATTCCAATGCAAAGT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000073279.13
ENSMUST00000110849.10
CDS-3UTR CCA 90 bp AAATCAAACCACAAGCTCAGGTTGGTTGAAAGGATCATACAAATGTATTCAGATCGTTACCCTCTCTTTTaGCTTCTTTCTTTGGGTCGT +
Preference number: 4 (lower is better)
Translates to: KSNHKLRLVERIIQMYSDRYPLF*LLSLGR
Trigger: ACGACCCAAAGAAAGAAGCCAAAAGAGAGGGTAACG...ATCTGAATACATTTGTATGATCCTTTCAACCAACCTGAGCTTGTGGTTTGATTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073279.13
ENSMUST00000110849.10
3UTR CAA 72 bp GACTTAGCCCTAAATCAAACCACAAGCTCAGGTTGGTaGAAAGGATCATACAAATGTATTCAGATGTTCAAC +
Preference number: 4 (lower is better)
Translates to: DLALNQTTSSGW*KGSYKCIQMFN
Trigger: GTTGAACATCTGAATACATTTGTATGATCCTTTCAACCAACCTGAGCTTGTGGTTTGATTTAGGGCTAAGTC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073279.13
ENSMUST00000110849.10
ENSMUST00000192158.6
3UTR CAA 72 bp GCCATAGTAAAATATTCTTTGTGGGTGCTAATGACTTaGCATTGGAATAAAAAGGCCTTAAGCCTCTGTTTC +
Preference number: 4 (lower is better)
Translates to: AIVKYSLWVLMT*HWNKKALSLCF
Trigger: GAAACAGAGGCTTAAGGCCTTTTTATTCCAATGCAAAGTCATTAGCACCCACAAAGAATATTTTACTATGGC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000073279.13
ENSMUST00000110849.10
ENSMUST00000192158.6
CDS-3UTR GCA 90 bp ACTTTGCATTGGAATAAAAAGGCCTTAAGCCTCTGTTTCTTCATAAAAACGATCCATTTTCTGCTTAAGTaGACTGTTTACTTGCTTAGC +
Preference number: 4 (lower is better)
Translates to: TLHWNKKALSLCFFIKTIHFLLK*TVYLLS
Trigger: GCTAAGCAAGTAAACAGTGCACTTAAGCAGAAAATG...GATCGTTTTTATGAAGAAACAGAGGCTTAAGGCCTTTTTATTCCAATGCAAAGT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000073279.13
ENSMUST00000110849.10
CDS-3UTR CCA 90 bp AAAACCAAACCAAACCAAACACTCTTTGTATCAAACACAGATCCTCTTAGTGAGTATATTCATCCAATTTaGCATCTGGGATACTGTGAT +
Preference number: 4 (lower is better)
Translates to: KTKPNQTLFVSNTDPLSEYIHPI*HLGYCD
Trigger: ATCACAGTATCCCAGATGCCAAATTGGATGAATATA...CTCACTAAGAGGATCTGTGTTTGATACAAAGAGTGTTTGGTTTGGTTTGGTTTT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073279.13
ENSMUST00000110849.10
CDS GCA 90 bp CCGTGCTCGTCGTCGCTGCTGCAGCCGCTCTCGGGCTCCGAGAAGTaGAGCCCGCCGTTGGCCGAGGAGCCGCCGCCTCCCGCCGGGCTC +
Preference number: 5 (lower is better)
Translates to: PCSSSLLQPLSGSEK*SPPLAEEPPPPAGL
Trigger: GAGCCCGGCGGGAGGCGGCGGCTCCTCGGCCAACGGCGGGCTGCACTTCTCGGAGCCCGAGAGCGGCTGCAGCAGCGACGACGAGCACGG
77% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000073279.13
ENSMUST00000110849.10
ENSMUST00000192128.6
ENSMUST00000192158.6
ENSMUST00000192491.6
ENSMUST00000192866.6
CDS CCA 90 bp GCAGCCCGCCGTTGGCCGAGGAGCCGCCGCCTCCCGCCGGGCTCTTaGCGCCGCCGTTGGCCGATCGGCTCTTCCCCAGTAACTCGGGCC +
Preference number: 5 (lower is better)
Translates to: AARRWPRSRRLPPGS*RRRWPIGSSPVTRA
Trigger: GGCCCGAGTTACTGGGGAAGAGCCGATCGGCCAACGGCGGCGCCAAGAGCCCGGCGGGAGGCGGCGGCTCCTCGGCCAACGGCGGGCTGC
77% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000073279.13
ENSMUST00000110849.10
ENSMUST00000192128.6
ENSMUST00000192158.6
ENSMUST00000192491.6
ENSMUST00000192866.6
CDS GCA 90 bp CAGCTCCGACTCTCATCCCAACATCCCCGTGCTCGTCGTCGCTGCTaGAGCCGCTCTCGGGCTCCGAGAAGTGCAGCCCGCCGTTGGCCG +
Preference number: 5 (lower is better)
Translates to: QLRLSSQHPRARRRC*SRSRAPRSAARRWP
Trigger: CGGCCAACGGCGGGCTGCACTTCTCGGAGCCCGAGAGCGGCTGCAGCAGCGACGACGAGCACGGGGATGTTGGGATGAGAGTCGGAGCTG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000073279.13
ENSMUST00000110849.10
ENSMUST00000192128.6
ENSMUST00000192158.6
ENSMUST00000192491.6
ENSMUST00000192866.6
CDS-3UTR CAA 90 bp GGAGGCCAAACAGAGGCCTCCTGCTGTGTCACACCACTTACACTAGTCCACCGCCCTCCCGCCGGGCTCTaGGCGCCGCCGTTGGCCGAT +
Preference number: 5 (lower is better)
Translates to: GGQTEASCCVTPLTLVHRPPAGL*APPLAD
Trigger: ATCGGCCAACGGCGGCGCCAAGAGCCCGGCGGGAGG...GCGGTGGACTAGTGTAAGTGGTGTGACACAGCAGGAGGCCTCTGTTTGGCCTCC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073279.13
ENSMUST00000110849.10
ENSMUST00000192158.6
CDS-3UTR CAA 90 bp AGGACCAGAAGCTGGCATGTCCTTATGACTAAGCAGTCAGAGACGCCTCACGAGCCTCCCGCCGGGCTCTaGGCGCCGCCGTTGGCCGAT +
Preference number: 5 (lower is better)
Translates to: RTRSWHVLMTKQSETPHEPPAGL*APPLAD
Trigger: ATCGGCCAACGGCGGCGCCAAGAGCCCGGCGGGAGG...CTCGTGAGGCGTCTCTGACTGCTTAGTCATAAGGACATGCCAGCTTCTGGTCCT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000192128.6
ENSMUST00000192491.6
CDS-3UTR CAA 90 bp GCTAGTCCTCACACACCCTCACAGCACACCACCAGAAGGGCGGGGCGGCTCCTCTTCAGGGATCCGAGCTaGGTATTCAGCTCCGACTCT +
Preference number: 5 (lower is better)
Translates to: ASPHTPSQHTTRRAGRLLFRDPS*VFSSDS
Trigger: AGAGTCGGAGCTGAATACCAAGCTCGGATCCCTGAA...GAGGAGCCGCCCCGCCCTTCTGGTGGTGTGCTGTGAGGGTGTGTGAGGACTAGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000192128.6
ENSMUST00000192491.6
CDS-3UTR CAA 90 bp GCTGACCGCCAACCGTGGTCAACACTGGTCTTGGGTTTAGGCGGGGTGGCATGGCAGCTCCATGTCCAGTaGCCTCAGGATGGTGTTGGC +
Preference number: 5 (lower is better)
Translates to: ADRQPWSTLVLGLGGVAWQLHVQ*PQDGVG
Trigger: GCCAACACCATCCTGAGGCAACTGGACATGGAGCTG...CCATGCCACCCCGCCTAAACCCAAGACCAGTGTTGACCACGGTTGGCGGTCAGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110849.10
CDS-3UTR CAA 90 bp CTAAGCAGTCAGAGACGCCTCACGAGGAAGTGTATTGTCAGCCTTATGCTCATTCCTCCCGCCGGGCTCTaGGCGCCGCCGTTGGCCGAT +
Preference number: 5 (lower is better)
Translates to: LSSQRRLTRKCIVSLMLIPPAGL*APPLAD
Trigger: ATCGGCCAACGGCGGCGCCAAGAGCCCGGCGGGAGG...AATGAGCATAAGGCTGACAATACACTTCCTCGTGAGGCGTCTCTGACTGCTTAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000192128.6
ENSMUST00000192491.6
CDS-3UTR CAA 90 bp GTTTGCCTTGTTTGGATCAGTCAGATGAGCACTGGTACAATGATAGGTGAGCCTCCTCCCGCCGGGCTCTaGGCGCCGCCGTTGGCCGAT +
Preference number: 5 (lower is better)
Translates to: VCLVWISQMSTGTMIGEPPPAGL*APPLAD
Trigger: ATCGGCCAACGGCGGCGCCAAGAGCCCGGCGGGAGG...AGGCTCACCTATCATTGTACCAGTGCTCATCTGACTGATCCAAACAAGGCAAAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073279.13
ENSMUST00000110849.10
ENSMUST00000192158.6
CDS-3UTR CAA 90 bp GGACTAGTTTGCCTTGTTTGGATCAGTCAGATGAGCACTGGTACAATGATAGGTCCTCCCGCCGGGCTCTaGGCGCCGCCGTTGGCCGAT +
Preference number: 5 (lower is better)
Translates to: GLVCLVWISQMSTGTMIGPPAGL*APPLAD
Trigger: ATCGGCCAACGGCGGCGCCAAGAGCCCGGCGGGAGG...ACCTATCATTGTACCAGTGCTCATCTGACTGATCCAAACAAGGCAAACTAGTCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073279.13
ENSMUST00000110849.10
ENSMUST00000192158.6
CDS-3UTR CAA 90 bp CAGCCTTATGCTCATTTAGCTAGTCCTCACACACCCTCACAGCACACCACCAGAATGGTGTTGGCTGCGTaGGGGCTGCAGGAGACAGCC +
Preference number: 5 (lower is better)
Translates to: QPYAHLASPHTPSQHTTRMVLAA*GLQETA
Trigger: GGCTGTCTCCTGCAGCCCCAACGCAGCCAACACCAT...TCTGGTGGTGTGCTGTGAGGGTGTGTGAGGACTAGCTAAATGAGCATAAGGCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000192128.6
ENSMUST00000192491.6
CDS-3UTR CAA 90 bp GCTAGTCCTCACACACCCTCACAGCACACCACCAGAAGGGCGGGGCGGCTCCTCAAGTGCACTGTTTACTaGCTTAGCATTCTGAACCTG +
Preference number: 5 (lower is better)
Translates to: ASPHTPSQHTTRRAGRLLKCTVY*LSILNL
Trigger: CAGGTTCAGAATGCTAAGCAAGTAAACAGTGCACTT...GAGGAGCCGCCCCGCCCTTCTGGTGGTGTGCTGTGAGGGTGTGTGAGGACTAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000192128.6
ENSMUST00000192491.6
CDS-3UTR CAA 90 bp TTAGCTAGTCCTCACACACCCTCACAGCACACCACCAGAAGGGCGGGGCGGCTCTTTTGGCTTCTTTCTTaGGGTCGTAGTCACTGTCGT +
Preference number: 5 (lower is better)
Translates to: LASPHTPSQHTTRRAGRLFWLLS*GRSHCR
Trigger: ACGACAGTGACTACGACCCAAAGAAAGAAGCCAAAA...GAGCCGCCCCGCCCTTCTGGTGGTGTGCTGTGAGGGTGTGTGAGGACTAGCTAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000192128.6
ENSMUST00000192491.6
CDS-3UTR CAA 90 bp CACTTTCGCTCTGCTAGGACCAGAAGCTGGCATGTCCTTATGACTAAGCAGTCAATGGTGTTGGCTGCGTaGGGGCTGCAGGAGACAGCC +
Preference number: 5 (lower is better)
Translates to: HFRSARTRSWHVLMTKQSMVLAA*GLQETA
Trigger: GGCTGTCTCCTGCAGCCCCAACGCAGCCAACACCAT...TGACTGCTTAGTCATAAGGACATGCCAGCTTCTGGTCCTAGCAGAGCGAAAGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000192128.6
ENSMUST00000192491.6
CDS-3UTR CAA 90 bp AGACTGTACTGCAGGTCTACTGACGAGAGACAAGACGATGAAAGCTGTCACGGTTGCCTCAGGATGGTGTaGGCTGCGTTGGGGCTGCAG +
Preference number: 5 (lower is better)
Translates to: RLYCRSTDERQDDESCHGCLRMV*AALGLQ
Trigger: CTGCAGCCCCAACGCAGCCAACACCATCCTGAGGCA...ACCGTGACAGCTTTCATCGTCTTGTCTCTCGTCAGTAGACCTGCAGTACAGTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073279.13
ENSMUST00000110849.10
CDS-3UTR CAA 90 bp GGCCAAACAGAGGCCTCCTGCTGTGTCACACCACTTACACTAGTCCACCGCCACTGTGCCTCAGGCGGTTaGAACTCTTCAATTCCACCT +
Preference number: 5 (lower is better)
Translates to: GQTEASCCVTPLTLVHRHCASGG*NSSIPP
Trigger: AGGTGGAATTGAAGAGTTCAAACCGCCTGAGGCACA...GTGGCGGTGGACTAGTGTAAGTGGTGTGACACAGCAGGAGGCCTCTGTTTGGCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000073279.13
CDS-3UTR CAA 90 bp AGACTGTACTGCAGGTCTACTGACGAGAGACAAGACGATGAAAGCTGTCACGGTGGGCGGCAGGCAGTGTaGGACGAAGAAGTGGTGGAG +
Preference number: 5 (lower is better)
Translates to: RLYCRSTDERQDDESCHGGRQAV*DEEVVE
Trigger: CTCCACCACTTCTTCGTCCAACACTGCCTGCCGCCC...ACCGTGACAGCTTTCATCGTCTTGTCTCTCGTCAGTAGACCTGCAGTACAGTCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073279.13
ENSMUST00000110849.10
CDS CCA 90 bp TCTGTGTACTTGGTAGCACCTGGATCGAATTCAGGGATCCGAGCTTaGTATTCAGCTCCGACTCTCATCCCAACATCCCCGTGCTCGTCG +
Preference number: 5 (lower is better)
Translates to: SVYLVAPGSNSGIRA*YSAPTLIPTSPCSS
Trigger: CGACGAGCACGGGGATGTTGGGATGAGAGTCGGAGCTGAATACCAAGCTCGGATCCCTGAATTCGATCCAGGTGCTACCAAGTACACAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000073279.13
ENSMUST00000110849.10
ENSMUST00000192128.6
ENSMUST00000192158.6
ENSMUST00000192491.6
ENSMUST00000192866.6
CDS-3UTR CAA 90 bp CATGTCCTTATGACTAAGCAGTCAGAGACGCCTCACGAGGAAGTGTATTGTCAGTGCCTCAGGATGGTGTaGGCTGCGTTGGGGCTGCAG +
Preference number: 5 (lower is better)
Translates to: HVLMTKQSETPHEEVYCQCLRMV*AALGLQ
Trigger: CTGCAGCCCCAACGCAGCCAACACCATCCTGAGGCA...CTGACAATACACTTCCTCGTGAGGCGTCTCTGACTGCTTAGTCATAAGGACATG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000192128.6
ENSMUST00000192491.6
CDS-3UTR CAA 90 bp ATCACAGTGGGCACTAGAAAGGAGGCCAAACAGAGGCCTCCTGCTGTGTCACACTGGCAATGGGGACTGTaGGTGTTGGAGTGGATGATG +
Preference number: 5 (lower is better)
Translates to: ITVGTRKEAKQRPPAVSHWQWGL*VLEWMM
Trigger: CATCATCCACTCCAACACCAACAGTCCCCATTGCCA...GTGTGACACAGCAGGAGGCCTCTGTTTGGCCTCCTTTCTAGTGCCCACTGTGAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073279.13
ENSMUST00000110849.10
CDS-3UTR CAA 90 bp GTTTGCCTTGTTTGGATCAGTCAGATGAGCACTGGTACAATGATAGGTGAGCCTGGGCGGCAGGCAGTGTaGGACGAAGAAGTGGTGGAG +
Preference number: 5 (lower is better)
Translates to: VCLVWISQMSTGTMIGEPGRQAV*DEEVVE
Trigger: CTCCACCACTTCTTCGTCCAACACTGCCTGCCGCCC...AGGCTCACCTATCATTGTACCAGTGCTCATCTGACTGATCCAAACAAGGCAAAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073279.13
ENSMUST00000110849.10
CDS-3UTR CAA 90 bp TTTCTTCCCATGAGATCACAGTGGGCACTAGAAAGGAGGCCAAACAGAGGCCTCTTCAGGGATCCGAGCTaGGTATTCAGCTCCGACTCT +
Preference number: 5 (lower is better)
Translates to: FLPMRSQWALERRPNRGLFRDPS*VFSSDS
Trigger: AGAGTCGGAGCTGAATACCAAGCTCGGATCCCTGAA...GAGGCCTCTGTTTGGCCTCCTTTCTAGTGCCCACTGTGATCTCATGGGAAGAAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073279.13
ENSMUST00000110849.10
ENSMUST00000192158.6
CDS-3UTR CAA 90 bp AGGCAGTGTTGGACGAAGAAGTGGTGGAGGCTGGTTCAGAGTGGCAATGGGGACAAATCTTTACCATATTaGCGGACACCTCAGGCGGTT +
Preference number: 5 (lower is better)
Translates to: RQCWTKKWWRLVQSGNGDKSLPY*RTPQAV
Trigger: AACCGCCTGAGGTGTCCGCAAATATGGTAAAGATTT...GTCCCCATTGCCACTCTGAACCAGCCTCCACCACTTCTTCGTCCAACACTGCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000192222.6
CDS-3UTR CAA 90 bp CCAAACAGAGGCCTCCTGCTGTGTCACACCACTTACACTAGTCCACCGCCACACACAAGCATGCCTCCATaGTCTTTATCTGTGTACTTG +
Preference number: 5 (lower is better)
Translates to: PNRGLLLCHTTYTSPPPHTSMPP*SLSVYL
Trigger: CAAGTACACAGATAAAGACAATGGAGGCATGCTTGT...GTGTGGCGGTGGACTAGTGTAAGTGGTGTGACACAGCAGGAGGCCTCTGTTTGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073279.13
ENSMUST00000110849.10
ENSMUST00000192158.6
CDS-3UTR CAA 90 bp CCAAACAGAGGCCTCCTGCTGTGTCACACCACTTACACTAGTCCACCGCCACACCTTATCTGGAAGCATTaGCTGAATCCTGTGAAAGCT +
Preference number: 5 (lower is better)
Translates to: PNRGLLLCHTTYTSPPPHLIWKH*LNPVKA
Trigger: AGCTTTCACAGGATTCAGCAAATGCTTCCAGATAAG...GTGTGGCGGTGGACTAGTGTAAGTGGTGTGACACAGCAGGAGGCCTCTGTTTGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073279.13
ENSMUST00000110849.10
CDS-3UTR CAA 90 bp CAGAAGGGCGGGGCGGCTCCTCAGCTCAGATTAGCTCAGATTCCAGACACAAACCTTATCTGGAAGCATTaGCTGAATCCTGTGAAAGCT +
Preference number: 5 (lower is better)
Translates to: QKGGAAPQLRLAQIPDTNLIWKH*LNPVKA
Trigger: AGCTTTCACAGGATTCAGCAAATGCTTCCAGATAAG...GTTTGTGTCTGGAATCTGAGCTAATCTGAGCTGAGGAGCCGCCCCGCCCTTCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000192491.6
CDS-3UTR CAA 90 bp CAGCCTTATGCTCATTTAGCTAGTCCTCACACACCCTCACAGCACACCACCAGAGCGTTACCCTCTCTTTaGGCTTCTTTCTTTGGGTCG +
Preference number: 5 (lower is better)
Translates to: QPYAHLASPHTPSQHTTRALPSL*ASFFGS
Trigger: CGACCCAAAGAAAGAAGCCAAAAGAGAGGGTAACGC...TCTGGTGGTGTGCTGTGAGGGTGTGTGAGGACTAGCTAAATGAGCATAAGGCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000192128.6
ENSMUST00000192491.6
CDS-3UTR CAA 90 bp AAGCAGTCAGAGACGCCTCACGAGGAAGTGTATTGTCAGCCTTATGCTCATTTACAGCTCCATGTCCAGTaGCCTCAGGATGGTGTTGGC +
Preference number: 5 (lower is better)
Translates to: KQSETPHEEVYCQPYAHLQLHVQ*PQDGVG
Trigger: GCCAACACCATCCTGAGGCAACTGGACATGGAGCTG...TAAATGAGCATAAGGCTGACAATACACTTCCTCGTGAGGCGTCTCTGACTGCTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000192128.6
ENSMUST00000192491.6
CDS-3UTR CAA 90 bp CTAAGCAGTCAGAGACGCCTCACGAGGAAGTGTATTGTCAGCCTTATGCTCATTTTCAGGGATCCGAGCTaGGTATTCAGCTCCGACTCT +
Preference number: 5 (lower is better)
Translates to: LSSQRRLTRKCIVSLMLIFRDPS*VFSSDS
Trigger: AGAGTCGGAGCTGAATACCAAGCTCGGATCCCTGAA...AATGAGCATAAGGCTGACAATACACTTCCTCGTGAGGCGTCTCTGACTGCTTAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000192128.6
ENSMUST00000192491.6
CDS-3UTR CAA 90 bp CACTTTCGCTCTGCTAGGACCAGAAGCTGGCATGTCCTTATGACTAAGCAGTCAGCGTTACCCTCTCTTTaGGCTTCTTTCTTTGGGTCG +
Preference number: 5 (lower is better)
Translates to: HFRSARTRSWHVLMTKQSALPSL*ASFFGS
Trigger: CGACCCAAAGAAAGAAGCCAAAAGAGAGGGTAACGC...TGACTGCTTAGTCATAAGGACATGCCAGCTTCTGGTCCTAGCAGAGCGAAAGTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000192128.6
ENSMUST00000192491.6
CDS-3UTR CAA 90 bp TCTTTGTGGGTGCTAATGACTTTGCATTGGAATAAAAAGGCCTTAAGCCTCTGTATGGTGTTGGCTGCGTaGGGGCTGCAGGAGACAGCC +
Preference number: 5 (lower is better)
Translates to: SLWVLMTLHWNKKALSLCMVLAA*GLQETA
Trigger: GGCTGTCTCCTGCAGCCCCAACGCAGCCAACACCAT...ACAGAGGCTTAAGGCCTTTTTATTCCAATGCAAAGTCATTAGCACCCACAAAGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000073279.13
ENSMUST00000110849.10
CDS-3UTR CAA 90 bp GTAGAAATAATACACTTTCGCTCTGCTAGGACCAGAAGCTGGCATGTCCTTATGCAGCTCCATGTCCAGTaGCCTCAGGATGGTGTTGGC +
Preference number: 5 (lower is better)
Translates to: VEIIHFRSARTRSWHVLMQLHVQ*PQDGVG
Trigger: GCCAACACCATCCTGAGGCAACTGGACATGGAGCTG...CATAAGGACATGCCAGCTTCTGGTCCTAGCAGAGCGAAAGTGTATTATTTCTAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000192128.6
ENSMUST00000192491.6
CDS-3UTR CAA 90 bp GTTTGCCTTGTTTGGATCAGTCAGATGAGCACTGGTACAATGATAGGTGAGCCTTGGCAATGGGGACTGTaGGTGTTGGAGTGGATGATG +
Preference number: 5 (lower is better)
Translates to: VCLVWISQMSTGTMIGEPWQWGL*VLEWMM
Trigger: CATCATCCACTCCAACACCAACAGTCCCCATTGCCA...AGGCTCACCTATCATTGTACCAGTGCTCATCTGACTGATCCAAACAAGGCAAAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073279.13
ENSMUST00000110849.10
CDS-3UTR CAA 90 bp CAGCCTTATGCTCATTTAGCTAGTCCTCACACACCCTCACAGCACACCACCAGAAAATCTTTACCATATTaGCGGACACCTCAGGCGGTT +
Preference number: 5 (lower is better)
Translates to: QPYAHLASPHTPSQHTTRKSLPY*RTPQAV
Trigger: AACCGCCTGAGGTGTCCGCAAATATGGTAAAGATTT...TCTGGTGGTGTGCTGTGAGGGTGTGTGAGGACTAGCTAAATGAGCATAAGGCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000192491.6
CDS-3UTR CAA 90 bp GGAAGGACTAGTTTGCCTTGTTTGGATCAGTCAGATGAGCACTGGTACAATGATTTCAGGGATCCGAGCTaGGTATTCAGCTCCGACTCT +
Preference number: 5 (lower is better)
Translates to: GRTSLPCLDQSDEHWYNDFRDPS*VFSSDS
Trigger: AGAGTCGGAGCTGAATACCAAGCTCGGATCCCTGAA...ATCATTGTACCAGTGCTCATCTGACTGATCCAAACAAGGCAAACTAGTCCTTCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073279.13
ENSMUST00000110849.10
ENSMUST00000192158.6
CDS-3UTR CAA 90 bp CAGCCTTATGCTCATTTAGCTAGTCCTCACACACCCTCACAGCACACCACCAGAACAAGCATGCCTCCATaGTCTTTATCTGTGTACTTG +
Preference number: 5 (lower is better)
Translates to: QPYAHLASPHTPSQHTTRTSMPP*SLSVYL
Trigger: CAAGTACACAGATAAAGACAATGGAGGCATGCTTGT...TCTGGTGGTGTGCTGTGAGGGTGTGTGAGGACTAGCTAAATGAGCATAAGGCTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000192128.6
ENSMUST00000192491.6
CDS-3UTR CAA 90 bp TCAGTGCTCTTCCCTGACGGCACCTTAGAAGCACTTTGTGTCTCCTCCCCTAAAACAAGCATGCCTCCATaGTCTTTATCTGTGTACTTG +
Preference number: 5 (lower is better)
Translates to: SVLFPDGTLEALCVSSPKTSMPP*SLSVYL
Trigger: CAAGTACACAGATAAAGACAATGGAGGCATGCTTGT...TTTAGGGGAGGAGACACAAAGTGCTTCTAAGGTGCCGTCAGGGAAGAGCACTGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000192491.6
CDS-3UTR CAA 90 bp AGCTCAGGTTGGTTGAAAGGATCATACAAATGTATTCAGATGTTCAACAGAGATATGGTGTTGGCTGCGTaGGGGCTGCAGGAGACAGCC +
Preference number: 5 (lower is better)
Translates to: SSGWLKGSYKCIQMFNRDMVLAA*GLQETA
Trigger: GGCTGTCTCCTGCAGCCCCAACGCAGCCAACACCAT...ATCTCTGTTGAACATCTGAATACATTTGTATGATCCTTTCAACCAACCTGAGCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073279.13
ENSMUST00000110849.10
CDS-3UTR CAA 90 bp CTAAATCAAACCACAAGCTCAGGTTGGTTGAAAGGATCATACAAATGTATTCAGTGCCTCAGGATGGTGTaGGCTGCGTTGGGGCTGCAG +
Preference number: 5 (lower is better)
Translates to: LNQTTSSGWLKGSYKCIQCLRMV*AALGLQ
Trigger: CTGCAGCCCCAACGCAGCCAACACCATCCTGAGGCA...CTGAATACATTTGTATGATCCTTTCAACCAACCTGAGCTTGTGGTTTGATTTAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073279.13
ENSMUST00000110849.10
CDS-3UTR CAA 90 bp CAGCCTTATGCTCATTTAGCTAGTCCTCACACACCCTCACAGCACACCACCAGAAAATCTTTACCATATTaGCGGACACCTTGCACTGCT +
Preference number: 5 (lower is better)
Translates to: QPYAHLASPHTPSQHTTRKSLPY*RTPCTA
Trigger: AGCAGTGCAAGGTGTCCGCAAATATGGTAAAGATTT...TCTGGTGGTGTGCTGTGAGGGTGTGTGAGGACTAGCTAAATGAGCATAAGGCTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000192128.6
CDS-3UTR CAA 90 bp GTCTCCTCCCCTAAAGCAGAAGCATCAGCATTAGAAGCCTGGGTTCCTTGTTCTAGGGACTTCTCAATGTaGTGTTTATGCCAGAACAAC +
Preference number: 5 (lower is better)
Translates to: VSSPKAEASALEAWVPCSRDFSM*CLCQNN
Trigger: GTTGTTCTGGCATAAACACAACATTGAGAAGTCCCT...AGAACAAGGAACCCAGGCTTCTAATGCTGATGCTTCTGCTTTAGGGGAGGAGAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000192491.6
CDS-3UTR CAA 90 bp CTAAGCAGTCAGAGACGCCTCACGAGGAAGTGTATTGTCAGCCTTATGCTCATTTTTTGGCTTCTTTCTTaGGGTCGTAGTCACTGTCGT +
Preference number: 5 (lower is better)
Translates to: LSSQRRLTRKCIVSLMLIFWLLS*GRSHCR
Trigger: ACGACAGTGACTACGACCCAAAGAAAGAAGCCAAAA...AATGAGCATAAGGCTGACAATACACTTCCTCGTGAGGCGTCTCTGACTGCTTAG
47% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 2 transcripts:
ENSMUST00000192128.6
ENSMUST00000192491.6
CDS-3UTR CAA 90 bp CAGTCAGAGACGCCTCACGAGGAAGTGTATTGTCAGCCTTATGCTCATTTAGCTACTTGGCCAACAGTCTaGTTGCCAATTACATCTGCA +
Preference number: 5 (lower is better)
Translates to: QSETPHEEVYCQPYAHLATWPTV*LPITSA
Trigger: TGCAGATGTAATTGGCAACAAGACTGTTGGCCAAGT...AGCTAAATGAGCATAAGGCTGACAATACACTTCCTCGTGAGGCGTCTCTGACTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000192128.6
CDS-3UTR CAA 90 bp CACGAGGAAGTGTATTGTCAGCCTTATGCTCATTTAGCTAGTCCTCACACACCCCTTATCTGGAAGCATTaGCTGAATCCTGTGAAAGCT +
Preference number: 5 (lower is better)
Translates to: HEEVYCQPYAHLASPHTPLIWKH*LNPVKA
Trigger: AGCTTTCACAGGATTCAGCAAATGCTTCCAGATAAG...GGGTGTGTGAGGACTAGCTAAATGAGCATAAGGCTGACAATACACTTCCTCGTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000192128.6
ENSMUST00000192491.6
CDS-3UTR CAA 90 bp GAAGGACTAGTTTGCCTTGTTTGGATCAGTCAGATGAGCACTGGTACAATGATAGCGTTACCCTCTCTTTaGGCTTCTTTCTTTGGGTCG +
Preference number: 5 (lower is better)
Translates to: EGLVCLVWISQMSTGTMIALPSL*ASFFGS
Trigger: CGACCCAAAGAAAGAAGCCAAAAGAGAGGGTAACGC...TATCATTGTACCAGTGCTCATCTGACTGATCCAAACAAGGCAAACTAGTCCTTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073279.13
ENSMUST00000110849.10
CDS-3UTR CAA 90 bp AAAACCAAACCAAACCAAACACTCTTTGTATCAAACACAGATCCTCTTAGTGAGCAGCTCCATGTCCAGTaGCCTCAGGATGGTGTTGGC +
Preference number: 5 (lower is better)
Translates to: KTKPNQTLFVSNTDPLSEQLHVQ*PQDGVG
Trigger: GCCAACACCATCCTGAGGCAACTGGACATGGAGCTG...CTCACTAAGAGGATCTGTGTTTGATACAAAGAGTGTTTGGTTTGGTTTGGTTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073279.13
ENSMUST00000110849.10
CDS-3UTR CAA 90 bp GGTGAGCCTTTGTCCAGCGTAATTAGTGCAGTGAAGGCTGTGAATCTGTCTGAAAAGTGCACTGTTTACTaGCTTAGCATTCTGAACCTG +
Preference number: 5 (lower is better)
Translates to: GEPLSSVISAVKAVNLSEKCTVY*LSILNL
Trigger: CAGGTTCAGAATGCTAAGCAAGTAAACAGTGCACTT...TTCAGACAGATTCACAGCCTTCACTGCACTAATTACGCTGGACAAAGGCTCACC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110849.10
CDS-3UTR CAA 90 bp CATGTCCTTATGACTAAGCAGTCAGAGACGCCTCACGAGGAAGTGTATTGTCAGAAGTGCACTGTTTACTaGCTTAGCATTCTGAACCTG +
Preference number: 5 (lower is better)
Translates to: HVLMTKQSETPHEEVYCQKCTVY*LSILNL
Trigger: CAGGTTCAGAATGCTAAGCAAGTAAACAGTGCACTT...CTGACAATACACTTCCTCGTGAGGCGTCTCTGACTGCTTAGTCATAAGGACATG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000192128.6
ENSMUST00000192491.6
CDS-3UTR CAA 90 bp CCTTTGTCCAGCGTAATTAGTGCAGTGAAGGCTGTGAATCTGTCTGAATCCCAAACAAGCATGCCTCCATaGTCTTTATCTGTGTACTTG +
Preference number: 5 (lower is better)
Translates to: PLSSVISAVKAVNLSESQTSMPP*SLSVYL
Trigger: CAAGTACACAGATAAAGACAATGGAGGCATGCTTGT...TTGGGATTCAGACAGATTCACAGCCTTCACTGCACTAATTACGCTGGACAAAGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000110849.10
ENSMUST00000192158.6
CDS-3UTR CAA 90 bp AAGCAGTCAGAGACGCCTCACGAGGAAGTGTATTGTCAGCCTTATGCTCATTTAAGGGACTTCTCAATGTaGTGTTTATGCCAGAACAAC +
Preference number: 5 (lower is better)
Translates to: KQSETPHEEVYCQPYAHLRDFSM*CLCQNN
Trigger: GTTGTTCTGGCATAAACACAACATTGAGAAGTCCCT...TAAATGAGCATAAGGCTGACAATACACTTCCTCGTGAGGCGTCTCTGACTGCTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000192128.6
ENSMUST00000192491.6
CDS-3UTR CAA 90 bp GGAAGGACTAGTTTGCCTTGTTTGGATCAGTCAGATGAGCACTGGTACAATGATTTTTGGCTTCTTTCTTaGGGTCGTAGTCACTGTCGT +
Preference number: 5 (lower is better)
Translates to: GRTSLPCLDQSDEHWYNDFWLLS*GRSHCR
Trigger: ACGACAGTGACTACGACCCAAAGAAAGAAGCCAAAA...ATCATTGTACCAGTGCTCATCTGACTGATCCAAACAAGGCAAACTAGTCCTTCC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000073279.13
ENSMUST00000110849.10
CDS-3UTR CAA 90 bp ACTTTGCATTGGAATAAAAAGGCCTTAAGCCTCTGTTTCTTCATAAAAACGATCTGGGGACTGTTGGTGTaGGAGTGGATGATGGGGCAG +
Preference number: 5 (lower is better)
Translates to: TLHWNKKALSLCFFIKTIWGLLV*EWMMGQ
Trigger: CTGCCCCATCATCCACTCCAACACCAACAGTCCCCA...GATCGTTTTTATGAAGAAACAGAGGCTTAAGGCCTTTTTATTCCAATGCAAAGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 2 transcripts:
ENSMUST00000073279.13
ENSMUST00000110849.10
CDS CCA 90 bp TGTAGCCATGTTTCTCTTTTGCAATGGCGATATATTCATCCAATTTaGCATCTGGGATACTGTGATAAGGAGACCACACAAGCATGCCTC +
Preference number: 5 (lower is better)
Translates to: CSHVSLLQWRYIHPI*HLGYCDKETTQACL
Trigger: GAGGCATGCTTGTGTGGTCTCCTTATCACAGTATCCCAGATGCCAAATTGGATGAATATATCGCCATTGCAAAAGAGAAACATGGCTACA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000073279.13
ENSMUST00000110849.10
ENSMUST00000192128.6
ENSMUST00000192491.6
ENSMUST00000192866.6
CDS-3UTR CAA 90 bp AGGACTAGTTTGCCTTGTTTGGATCAGTCAGATGAGCACTGGTACAATGATAGGACAAGCATGCCTCCATaGTCTTTATCTGTGTACTTG +
Preference number: 5 (lower is better)
Translates to: RTSLPCLDQSDEHWYNDRTSMPP*SLSVYL
Trigger: CAAGTACACAGATAAAGACAATGGAGGCATGCTTGT...CCTATCATTGTACCAGTGCTCATCTGACTGATCCAAACAAGGCAAACTAGTCCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073279.13
ENSMUST00000110849.10
ENSMUST00000192158.6
CDS-3UTR CAA 90 bp AGGACTAGTTTGCCTTGTTTGGATCAGTCAGATGAGCACTGGTACAATGATAGGAGGGACTTCTCAATGTaGTGTTTATGCCAGAACAAC +
Preference number: 5 (lower is better)
Translates to: RTSLPCLDQSDEHWYNDRRDFSM*CLCQNN
Trigger: GTTGTTCTGGCATAAACACAACATTGAGAAGTCCCT...CCTATCATTGTACCAGTGCTCATCTGACTGATCCAAACAAGGCAAACTAGTCCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073279.13
ENSMUST00000110849.10
CDS-3UTR CAA 90 bp GGAAGGACTAGTTTGCCTTGTTTGGATCAGTCAGATGAGCACTGGTACAATGATAAGTGCACTGTTTACTaGCTTAGCATTCTGAACCTG +
Preference number: 5 (lower is better)
Translates to: GRTSLPCLDQSDEHWYNDKCTVY*LSILNL
Trigger: CAGGTTCAGAATGCTAAGCAAGTAAACAGTGCACTT...ATCATTGTACCAGTGCTCATCTGACTGATCCAAACAAGGCAAACTAGTCCTTCC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073279.13
ENSMUST00000110849.10
CDS-3UTR CAA 90 bp TTAACAGTAGAAATAATACACTTTCGCTCTGCTAGGACCAGAAGCTGGCATGTCAAAGAAGTTCTTCACTaGGCCAACAGTCTTGTTGCC +
Preference number: 5 (lower is better)
Translates to: LTVEIIHFRSARTRSWHVKEVLH*ANSLVA
Trigger: GGCAACAAGACTGTTGGCCAAGTGAAGAACTTCTTT...GACATGCCAGCTTCTGGTCCTAGCAGAGCGAAAGTGTATTATTTCTACTGTTAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000192128.6
CDS CCA 90 bp ATGTTTCTCTTTTGCAATGGCGATATATTCATCCAATTTGGCATCTaGGATACTGTGATAAGGAGACCACACAAGCATGCCTCCATTGTC +
Preference number: 5 (lower is better)
Translates to: MFLFCNGDIFIQFGI*DTVIRRPHKHASIV
Trigger: GACAATGGAGGCATGCTTGTGTGGTCTCCTTATCACAGTATCCCAGATGCCAAATTGGATGAATATATCGCCATTGCAAAAGAGAAACAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000073279.13
ENSMUST00000110849.10
ENSMUST00000192128.6
ENSMUST00000192491.6
ENSMUST00000192866.6
ENSMUST00000193144.2
CDS-3UTR CAA 90 bp AAATCAAACCACAAGCTCAGGTTGGTTGAAAGGATCATACAAATGTATTCAGATTTCAGGGATCCGAGCTaGGTATTCAGCTCCGACTCT +
Preference number: 5 (lower is better)
Translates to: KSNHKLRLVERIIQMYSDFRDPS*VFSSDS
Trigger: AGAGTCGGAGCTGAATACCAAGCTCGGATCCCTGAA...ATCTGAATACATTTGTATGATCCTTTCAACCAACCTGAGCTTGTGGTTTGATTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073279.13
ENSMUST00000110849.10
ENSMUST00000192158.6
CDS-3UTR CAA 90 bp TTGTGGGTGCTAATGACTTTGCATTGGAATAAAAAGGCCTTAAGCCTCTGTTTCTTTTGGCTTCTTTCTTaGGGTCGTAGTCACTGTCGT +
Preference number: 5 (lower is better)
Translates to: LWVLMTLHWNKKALSLCFFWLLS*GRSHCR
Trigger: ACGACAGTGACTACGACCCAAAGAAAGAAGCCAAAA...GAAACAGAGGCTTAAGGCCTTTTTATTCCAATGCAAAGTCATTAGCACCCACAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000073279.13
ENSMUST00000110849.10
CDS-3UTR CAA 90 bp TTGTGGGTGCTAATGACTTTGCATTGGAATAAAAAGGCCTTAAGCCTCTGTTTCAGGGACTTCTCAATGTaGTGTTTATGCCAGAACAAC +
Preference number: 5 (lower is better)
Translates to: LWVLMTLHWNKKALSLCFRDFSM*CLCQNN
Trigger: GTTGTTCTGGCATAAACACAACATTGAGAAGTCCCT...GAAACAGAGGCTTAAGGCCTTTTTATTCCAATGCAAAGTCATTAGCACCCACAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000073279.13
ENSMUST00000110849.10
CDS-3UTR CAA 90 bp ACTTTGCATTGGAATAAAAAGGCCTTAAGCCTCTGTTTCTTCATAAAAACGATCGCGTTACCCTCTCTTTaGGCTTCTTTCTTTGGGTCG +
Preference number: 5 (lower is better)
Translates to: TLHWNKKALSLCFFIKTIALPSL*ASFFGS
Trigger: CGACCCAAAGAAAGAAGCCAAAAGAGAGGGTAACGC...GATCGTTTTTATGAAGAAACAGAGGCTTAAGGCCTTTTTATTCCAATGCAAAGT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000073279.13
ENSMUST00000110849.10
CDS-3UTR CAA 90 bp GTAAACAGCTTAACAGTAGAAATAATACACTTTCGCTCTGCTAGGACCAGAAGCTGGCCAACAGTCTTGTaGCCAATTACATCTGCAATA +
Preference number: 5 (lower is better)
Translates to: VNSLTVEIIHFRSARTRSWPTVL*PITSAI
Trigger: TATTGCAGATGTAATTGGCAACAAGACTGTTGGCCA...GCTTCTGGTCCTAGCAGAGCGAAAGTGTATTATTTCTACTGTTAAGCTGTTTAC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000192128.6
CDS GCA 90 bp AAAGAAGTTCTTCACTTGGCCAACAGTCTTGTTGCCAATTACATCTaGAATAGCTTGAAAATCTTTACCATATTTGCGGACACCTTGCAC +
Preference number: 5 (lower is better)
Translates to: KEVLHLANSLVANYI*NSLKIFTIFADTLH
Trigger: GTGCAAGGTGTCCGCAAATATGGTAAAGATTTTCAAGCTATTGCAGATGTAATTGGCAACAAGACTGTTGGCCAAGTGAAGAACTTCTTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000192128.6
ENSMUST00000192866.6
ENSMUST00000194750.6
CDS CAA 90 bp TGCAGCCCGCCGTTGGCCGAGGAGCCGCCGCCTCCCGCCGGGCTCTaGGCGCCGCCGTTGGCCGATCGGCTCTTCCCCAGTAACTCGGGC +
Preference number: 6 (lower is better)
Translates to: CSPPLAEEPPPPAGL*APPLADRLFPSNSG
Trigger: GCCCGAGTTACTGGGGAAGAGCCGATCGGCCAACGGCGGCGCCAAGAGCCCGGCGGGAGGCGGCGGCTCCTCGGCCAACGGCGGGCTGCA
76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000073279.13
ENSMUST00000110849.10
ENSMUST00000192128.6
ENSMUST00000192158.6
ENSMUST00000192491.6
ENSMUST00000192866.6
CDS GCA 72 bp TCGTCGCTGCTGCAGCCGCTCTCGGGCTCCGAGAAGTaGAGCCCGCCGTTGGCCGAGGAGCCGCCGCCTCCC +
Preference number: 6 (lower is better)
Translates to: SSLLQPLSGSEK*SPPLAEEPPPP
Trigger: GGGAGGCGGCGGCTCCTCGGCCAACGGCGGGCTGCACTTCTCGGAGCCCGAGAGCGGCTGCAGCAGCGACGA
75% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000073279.13
ENSMUST00000110849.10
ENSMUST00000192128.6
ENSMUST00000192158.6
ENSMUST00000192491.6
ENSMUST00000192866.6
CDS GCA 72 bp CTCTCATCCCAACATCCCCGTGCTCGTCGTCGCTGCTaGAGCCGCTCTCGGGCTCCGAGAAGTGCAGCCCGC +
Preference number: 6 (lower is better)
Translates to: LSSQHPRARRRC*SRSRAPRSAAR
Trigger: GCGGGCTGCACTTCTCGGAGCCCGAGAGCGGCTGCAGCAGCGACGACGAGCACGGGGATGTTGGGATGAGAG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000073279.13
ENSMUST00000110849.10
ENSMUST00000192128.6
ENSMUST00000192158.6
ENSMUST00000192491.6
ENSMUST00000192866.6
CDS GCA 72 bp CGACTCTCATCCCAACATCCCCGTGCTCGTCGTCGCTaGTGCAGCCGCTCTCGGGCTCCGAGAAGTGCAGCC +
Preference number: 6 (lower is better)
Translates to: RLSSQHPRARRR*CSRSRAPRSAA
Trigger: GGCTGCACTTCTCGGAGCCCGAGAGCGGCTGCAGCAGCGACGACGAGCACGGGGATGTTGGGATGAGAGTCG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000073279.13
ENSMUST00000110849.10
ENSMUST00000192128.6
ENSMUST00000192158.6
ENSMUST00000192491.6
ENSMUST00000192866.6
CDS CCA 72 bp TTGGTAGCACCTGGATCGAATTCAGGGATCCGAGCTTaGTATTCAGCTCCGACTCTCATCCCAACATCCCCG +
Preference number: 6 (lower is better)
Translates to: LVAPGSNSGIRA*YSAPTLIPTSP
Trigger: CGGGGATGTTGGGATGAGAGTCGGAGCTGAATACCAAGCTCGGATCCCTGAATTCGATCCAGGTGCTACCAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000073279.13
ENSMUST00000110849.10
ENSMUST00000192128.6
ENSMUST00000192158.6
ENSMUST00000192491.6
ENSMUST00000192866.6
CDS CAA 72 bp CTTGGTAGCACCTGGATCGAATTCAGGGATCCGAGCTaGGTATTCAGCTCCGACTCTCATCCCAACATCCCC +
Preference number: 6 (lower is better)
Translates to: LGSTWIEFRDPS*VFSSDSHPNIP
Trigger: GGGGATGTTGGGATGAGAGTCGGAGCTGAATACCAAGCTCGGATCCCTGAATTCGATCCAGGTGCTACCAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000073279.13
ENSMUST00000110849.10
ENSMUST00000192128.6
ENSMUST00000192158.6
ENSMUST00000192491.6
ENSMUST00000192866.6
CDS CAA 90 bp ATCTGTGTACTTGGTAGCACCTGGATCGAATTCAGGGATCCGAGCTaGGTATTCAGCTCCGACTCTCATCCCAACATCCCCGTGCTCGTC +
Preference number: 6 (lower is better)
Translates to: ICVLGSTWIEFRDPS*VFSSDSHPNIPVLV
Trigger: GACGAGCACGGGGATGTTGGGATGAGAGTCGGAGCTGAATACCAAGCTCGGATCCCTGAATTCGATCCAGGTGCTACCAAGTACACAGAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000073279.13
ENSMUST00000110849.10
ENSMUST00000192128.6
ENSMUST00000192158.6
ENSMUST00000192491.6
ENSMUST00000192866.6
CDS GCA 72 bp CTTCACTTGGCCAACAGTCTTGTTGCCAATTACATCTaGAATAGCTTGAAAATCTTTACCATATTTGCGGAC +
Preference number: 6 (lower is better)
Translates to: LHLANSLVANYI*NSLKIFTIFAD
Trigger: GTCCGCAAATATGGTAAAGATTTTCAAGCTATTGCAGATGTAATTGGCAACAAGACTGTTGGCCAAGTGAAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000192128.6
ENSMUST00000192866.6
ENSMUST00000194750.6
CDS CCA 72 bp GTTTCTCTTTTGCAATGGCGATATATTCATCCAATTTaGCATCTGGGATACTGTGATAAGGAGACCACACAA +
Preference number: 6 (lower is better)
Translates to: VSLLQWRYIHPI*HLGYCDKETTQ
Trigger: TTGTGTGGTCTCCTTATCACAGTATCCCAGATGCCAAATTGGATGAATATATCGCCATTGCAAAAGAGAAAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000073279.13
ENSMUST00000110849.10
ENSMUST00000192128.6
ENSMUST00000192491.6
ENSMUST00000192866.6
ENSMUST00000193144.2