Pregenerated sensors for RCN3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000019539Ensembl transcript IDs: ENSMUST00000019683.11, ENSMUST00000209761.2, ENSMUST00000210469.2, ENSMUST00000210527.2, ENSMUST00000210734.2, ENSMUST00000211352.2, ENSMUST00000211760.2
Found 81 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | AGGTCAGGATGTGGCCCCGCGTCAGTGCTGGGATGCTATCAGTGGGTGTCACTTGGGTCCCAGGGTTGGTaGCAGGGGTCTCAGGGAGAG | + |
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Preference number: 2 (lower is better) Translates to: RSGCGPASVLGCYQWVSLGSQGW*QGSQGE Trigger: CTCTCCCTGAGACCCCTGTCACCAACCCTGGGACCC...AAGTGACACCCACTGATAGCATCCCAGCACTGACGCGGGGCCACATCCTGACCT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000019683.11 ENSMUST00000211352.2 |
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| 3UTR-3UTR TCA 90 bp | GTGGCCCCGCGTCAGTGCTGGGATGCTATCAGTGGGTGTCACTTATCTTTGAGTGGGTCCCAGGGTTGGTaGCAGGGGTCTCAGGGAGAG | + |
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Preference number: 2 (lower is better) Translates to: VAPRQCWDAISGCHLSLSGSQGW*QGSQGE Trigger: CTCTCCCTGAGACCCCTGTCACCAACCCTGGGACCC...ACTCAAAGATAAGTGACACCCACTGATAGCATCCCAGCACTGACGCGGGGCCAC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000019683.11 ENSMUST00000211352.2 |
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| 3UTR-3UTR CCA 90 bp | GCCCCGCGTCAGTGCTGGGATGCTATCAGTGGGTGTCACTTATCTTTGAGTGCCGTATCCTGGGCAGGTTaGGGGGTCCCAGGGTTGGTG | + |
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Preference number: 2 (lower is better) Translates to: APRQCWDAISGCHLSLSAVSWAG*GVPGLV Trigger: CACCAACCCTGGGACCCCCCAACCTGCCCAGGATAC...GGCACTCAAAGATAAGTGACACCCACTGATAGCATCCCAGCACTGACGCGGGGC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000019683.11 ENSMUST00000211352.2 |
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| 3UTR-3UTR TCA 90 bp | AGGTCAGGATGTGGCCCCGCGTCAGTGCTGGGATGCTATCAGTGGGTGTCACTTGGGAGAGAAGGTGACTaGGGGCCCAAGAACCAGGAA | + |
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Preference number: 2 (lower is better) Translates to: RSGCGPASVLGCYQWVSLGREGD*GPKNQE Trigger: TTCCTGGTTCTTGGGCCCTCAGTCACCTTCTCTCCC...AAGTGACACCCACTGATAGCATCCCAGCACTGACGCGGGGCCACATCCTGACCT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000019683.11 ENSMUST00000211352.2 |
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| 3UTR-3UTR TCA 90 bp | GAGAAGGTGACTGAGGGCCCAAGAACCAGGAACACCAGAGCTGAGTCTGTGTCCCTCAGGGAGAGAAGGTaGCTGAGGGCCCAAGAACCA | + |
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Preference number: 2 (lower is better) Translates to: EKVTEGPRTRNTRAESVSLRERR*LRAQEP Trigger: TGGTTCTTGGGCCCTCAGTCACCTTCTCTCCCTGAG...GGACACAGACTCAGCTCTGGTGTTCCTGGTTCTTGGGCCCTCAGTCACCTTCTC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000019683.11 ENSMUST00000209761.2 ENSMUST00000211352.2 |
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| 3UTR-3UTR CCA 90 bp | GCTCCTAGGCAGGACAGGTTAGCTTGTGCTGTTGACATTCAGAGTTCAAATTGCGTATCCTGGGCAGGTTaGGGGGTCCCAGGGTTGGTG | + |
|
Preference number: 2 (lower is better) Translates to: APRQDRLACAVDIQSSNCVSWAG*GVPGLV Trigger: CACCAACCCTGGGACCCCCCAACCTGCCCAGGATAC...GCAATTTGAACTCTGAATGTCAACAGCACAAGCTAACCTGTCCTGCCTAGGAGC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000019683.11 ENSMUST00000211352.2 |
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| 3UTR-3UTR TCA 90 bp | GCTCCTAGGCAGGACAGGTTAGCTTGTGCTGTTGACATTCAGAGTTCAAATTGCGGGAGAGAAGGTGACTaGGGGCCCAAGAACCAGGAA | + |
|
Preference number: 2 (lower is better) Translates to: APRQDRLACAVDIQSSNCGREGD*GPKNQE Trigger: TTCCTGGTTCTTGGGCCCTCAGTCACCTTCTCTCCC...GCAATTTGAACTCTGAATGTCAACAGCACAAGCTAACCTGTCCTGCCTAGGAGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000019683.11 ENSMUST00000211352.2 |
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| 3UTR TCA 72 bp | CCCAGGGTTGGTGACAGGGGTCTCAGGGAGAGAAGGTaGCTGAGGGCCCAAGAACCAGGAACACCAGAGCTG | + |
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Preference number: 3 (lower is better) Translates to: PRVGDRGLRERR*LRAQEPGTPEL Trigger: CAGCTCTGGTGTTCCTGGTTCTTGGGCCCTCAGTCACCTTCTCTCCCTGAGACCCCTGTCACCAACCCTGGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000019683.11 ENSMUST00000209761.2 ENSMUST00000211352.2 |
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| 3UTR-3UTR CAA 90 bp | CGGTTGTCCCCCATGTGGTCATGTGGTCGGAAGTCTGAGAGACATGGGGATCAGGCTCATCATGGTGCCTaGTCAGGTCCTCACCGTAGT | + |
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Preference number: 3 (lower is better) Translates to: RLSPMWSCGRKSERHGDQAHHGA*SGPHRS Trigger: ACTACGGTGAGGACCTGACAAGGCACCATGATGAGC...CTGATCCCCATGTCTCTCAGACTTCCGACCACATGACCACATGGGGGACAACCG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000209761.2 |
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| CDS-3UTR CCA 90 bp | GCGGTTAGGTCAGGATGTGGCCCCGCGTCAGTGCTGGGATGCTATCAGTGGGTGCCGTGGGCGTCATCGTaGGGGGCCTCGCTCAGGGGG | + |
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Preference number: 4 (lower is better) Translates to: AVRSGCGPASVLGCYQWVPWASS*GASLRG Trigger: CCCCCTGAGCGAGGCCCCCCACGATGACGCCCACGG...CACCCACTGATAGCATCCCAGCACTGACGCGGGGCCACATCCTGACCTAACCGC 68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000019683.11 ENSMUST00000211352.2 |
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| CDS-3UTR CCA 90 bp | AGAACCAGGAACACCAGAGCTGAGTCTGTGTCCTGGGGGCGGGGCTGGCTGCAGGCCTCCACCAGGGGCTaGTCCTGGGATGGAGGCAGC | + |
|
Preference number: 4 (lower is better) Translates to: RTRNTRAESVSWGRGWLQASTRG*SWDGGS Trigger: GCTGCCTCCATCCCAGGACCAGCCCCTGGTGGAGGC...CTGCAGCCAGCCCCGCCCCCAGGACACAGACTCAGCTCTGGTGTTCCTGGTTCT 67% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000019683.11 ENSMUST00000211352.2 |
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| CDS-3UTR CCA 90 bp | AGAACCAGGAACACCAGAGCTGAGTCTGTGTCCTGGGGGCGGGGCTGGCTGCAGTCCTGCATCAGGGGATaGCTTCCCGAGGGCCCAGTG | + |
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Preference number: 4 (lower is better) Translates to: RTRNTRAESVSWGRGWLQSCIRG*LPEGPV Trigger: CACTGGGCCCTCGGGAAGCCATCCCCTGATGCAGGA...CTGCAGCCAGCCCCGCCCCCAGGACACAGACTCAGCTCTGGTGTTCCTGGTTCT 64% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000019683.11 ENSMUST00000211352.2 |
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| CDS-3UTR CCA 90 bp | AGAACCAGGAACACCAGAGCTGAGTCTGTGTCCTGGGGGCGGGGCTGGCTGCAGCGCCCAAGTCGGGCCTaGCTTTCCTCTGGGCTGAGT | + |
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Preference number: 4 (lower is better) Translates to: RTRNTRAESVSWGRGWLQRPSRA*LSSGLS Trigger: ACTCAGCCCAGAGGAAAGCCAGGCCCGACTTGGGCG...CTGCAGCCAGCCCCGCCCCCAGGACACAGACTCAGCTCTGGTGTTCCTGGTTCT 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000019683.11 ENSMUST00000211352.2 |
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| CDS-3UTR CCA 90 bp | AGAACCAGGAACACCAGAGCTGAGTCTGTGTCCTGGGGGCGGGGCTGGCTGCAGCTCTCATGCAGCAGGTaGTTGGCCTCCACCAGGGGC | + |
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Preference number: 4 (lower is better) Translates to: RTRNTRAESVSWGRGWLQLSCSR*LASTRG Trigger: GCCCCTGGTGGAGGCCAACCACCTGCTGCATGAGAG...CTGCAGCCAGCCCCGCCCCCAGGACACAGACTCAGCTCTGGTGTTCCTGGTTCT 64% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000019683.11 ENSMUST00000211352.2 |
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| CDS-3UTR GCA 90 bp | CATCATGGTGCCTTGTCAGGTCCTCACCGTAGTTGGTGGCCTGGCTGCCCACAATGCCGCTGCTGTGTGTaGGCGATCCACGCGCGGAGC | + |
|
Preference number: 4 (lower is better) Translates to: HHGALSGPHRSWWPGCPQCRCCV*AIHARS Trigger: GCTCCGCGCGTGGATCGCGCACACACAGCAGCGGCA...TTGTGGGCAGCCAGGCCACCAACTACGGTGAGGACCTGACAAGGCACCATGATG 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000209761.2 |
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| CDS-3UTR GCA 90 bp | CCCCGCGGTTGTCCCCCATGTGGTCATGTGGTCGGAAGTCTGAGAGACATGGGGTGCTGCCGCTCTGTCTaGACCCAGGCAGGTTCCTCC | + |
|
Preference number: 4 (lower is better) Translates to: PRGCPPCGHVVGSLRDMGCCRSV*TQAGSS Trigger: GGAGGAACCTGCCTGGGTGCAGACAGAGCGGCAGCA...CCCCATGTCTCTCAGACTTCCGACCACATGACCACATGGGGGACAACCGCGGGG 63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000019683.11 ENSMUST00000209761.2 ENSMUST00000211352.2 |
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| CDS-3UTR CCA 90 bp | GTGGCCCCGCGTCAGTGCTGGGATGCTATCAGTGGGTGTCACTTATCTTTGAGTCCGTGGGCGTCATCGTaGGGGGCCTCGCTCAGGGGG | + |
|
Preference number: 4 (lower is better) Translates to: VAPRQCWDAISGCHLSLSPWASS*GASLRG Trigger: CCCCCTGAGCGAGGCCCCCCACGATGACGCCCACGG...ACTCAAAGATAAGTGACACCCACTGATAGCATCCCAGCACTGACGCGGGGCCAC 63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000019683.11 ENSMUST00000211352.2 |
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| CDS-3UTR TCA 90 bp | CCCCGCGGTTGTCCCCCATGTGGTCATGTGGTCGGAAGTCTGAGAGACATGGGGACGATGTCCCGCATGTaGGGGAACTCCTCCGGATGC | + |
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Preference number: 4 (lower is better) Translates to: PRGCPPCGHVVGSLRDMGTMSRM*GNSSGC Trigger: GCATCCGGAGGAGTTCCCTCACATGCGGGACATCGT...CCCCATGTCTCTCAGACTTCCGACCACATGACCACATGGGGGACAACCGCGGGG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 3 transcripts: ENSMUST00000019683.11 ENSMUST00000209761.2 ENSMUST00000211352.2 |
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| CDS-3UTR GCA 90 bp | GAGAAGGTGACTGAGGGCCCAAGAACCAGGAACACCAGAGCTGAGTCTGTGTCCTGCCGCTGCTGTGTGTaGGCGATCCACGCGCGGAGC | + |
|
Preference number: 4 (lower is better) Translates to: EKVTEGPRTRNTRAESVSCRCCV*AIHARS Trigger: GCTCCGCGCGTGGATCGCGCACACACAGCAGCGGCA...GGACACAGACTCAGCTCTGGTGTTCCTGGTTCTTGGGCCCTCAGTCACCTTCTC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000019683.11 ENSMUST00000209761.2 ENSMUST00000211352.2 |
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| CDS-3UTR GCA 90 bp | GGCCCCGCGTCAGTGCTGGGATGCTATCAGTGGGTGTCACTTATCTTTGAGTGCTGCCGCTGCTGTGTGTaGGCGATCCACGCGCGGAGC | + |
|
Preference number: 4 (lower is better) Translates to: GPASVLGCYQWVSLIFECCRCCV*AIHARS Trigger: GCTCCGCGCGTGGATCGCGCACACACAGCAGCGGCA...GCACTCAAAGATAAGTGACACCCACTGATAGCATCCCAGCACTGACGCGGGGCC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000019683.11 ENSMUST00000211352.2 |
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| CDS-3UTR GCA 90 bp | CCCCGCGGTTGTCCCCCATGTGGTCATGTGGTCGGAAGTCTGAGAGACATGGGGTCACGGATGTGCCGCTaGTGTGTGTGCGCGATCCAC | + |
|
Preference number: 4 (lower is better) Translates to: PRGCPPCGHVVGSLRDMGSRMCR*CVCAIH Trigger: GTGGATCGCGCACACACAGCAGCGGCACATCCGTGA...CCCCATGTCTCTCAGACTTCCGACCACATGACCACATGGGGGACAACCGCGGGG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000019683.11 ENSMUST00000209761.2 ENSMUST00000211352.2 |
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| CDS-3UTR GCA 90 bp | GCGGTTAGGTCAGGATGTGGCCCCGCGTCAGTGCTGGGATGCTATCAGTGGGTGTCCGTGTCGCTCTCATaGAGCAGGTGGTTGGCCTCC | + |
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Preference number: 4 (lower is better) Translates to: AVRSGCGPASVLGCYQWVSVSLS*SRWLAS Trigger: GGAGGCCAACCACCTGCTGCATGAGAGCGACACGGA...CACCCACTGATAGCATCCCAGCACTGACGCGGGGCCACATCCTGACCTAACCGC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000019683.11 ENSMUST00000211352.2 |
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| CDS-3UTR GCA 90 bp | CCCCGCGGTTGTCCCCCATGTGGTCATGTGGTCGGAAGTCTGAGAGACATGGGGGGGAACTCCTCCGGATaGAGAAAGGCCGTCAGCTCT | + |
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Preference number: 4 (lower is better) Translates to: PRGCPPCGHVVGSLRDMGGNSSG*RKAVSS Trigger: AGAGCTGACGGCCTTTCTGCATCCGGAGGAGTTCCC...CCCCATGTCTCTCAGACTTCCGACCACATGACCACATGGGGGACAACCGCGGGG 61% GC, longest homopolymer 7 nt, total homopolymer stretches 16 nt. Matches the following 3 transcripts: ENSMUST00000019683.11 ENSMUST00000209761.2 ENSMUST00000211352.2 |
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| CDS-3UTR GCA 90 bp | CCCCGCGGTTGTCCCCCATGTGGTCATGTGGTCGGAAGTCTGAGAGACATGGGGAACTCTCGGAACTGCTaGCGCTCTGTCTGCACCCAG | + |
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Preference number: 4 (lower is better) Translates to: PRGCPPCGHVVGSLRDMGNSRNC*RSVCTQ Trigger: CTGGGTGCAGACAGAGCGGCAGCAGTTCCGAGAGTT...CCCCATGTCTCTCAGACTTCCGACCACATGACCACATGGGGGACAACCGCGGGG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000019683.11 ENSMUST00000209761.2 ENSMUST00000211352.2 |
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| CDS-3UTR CCA 90 bp | GTGGCCCCGCGTCAGTGCTGGGATGCTATCAGTGGGTGTCACTTATCTTTGAGTGCCTCCACCAGGGGCTaGTCCTGGGATGGAGGCAGC | + |
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Preference number: 4 (lower is better) Translates to: VAPRQCWDAISGCHLSLSASTRG*SWDGGS Trigger: GCTGCCTCCATCCCAGGACCAGCCCCTGGTGGAGGC...ACTCAAAGATAAGTGACACCCACTGATAGCATCCCAGCACTGACGCGGGGCCAC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000019683.11 ENSMUST00000211352.2 |
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| CDS-3UTR CCA 90 bp | GCGGTTAGGTCAGGATGTGGCCCCGCGTCAGTGCTGGGATGCTATCAGTGGGTGCCTCACCGTAGTTGGTaGCCTGGCTGCCCACAAACA | + |
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Preference number: 4 (lower is better) Translates to: AVRSGCGPASVLGCYQWVPHRSW*PGCPQT Trigger: TGTTTGTGGGCAGCCAGGCCACCAACTACGGTGAGG...CACCCACTGATAGCATCCCAGCACTGACGCGGGGCCACATCCTGACCTAACCGC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000019683.11 ENSMUST00000211352.2 |
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| CDS-3UTR GCA 90 bp | GCCCCGCGTCAGTGCTGGGATGCTATCAGTGGGTGTCACTTATCTTTGAGTGCCTGCTGCCGCTCTGTCTaGACCCAGGCAGGTTCCTCC | + |
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Preference number: 4 (lower is better) Translates to: APRQCWDAISGCHLSLSACCRSV*TQAGSS Trigger: GGAGGAACCTGCCTGGGTGCAGACAGAGCGGCAGCA...GGCACTCAAAGATAAGTGACACCCACTGATAGCATCCCAGCACTGACGCGGGGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000019683.11 ENSMUST00000211352.2 |
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| CDS-3UTR GCA 90 bp | GCGGTTAGGTCAGGATGTGGCCCCGCGTCAGTGCTGGGATGCTATCAGTGGGTGAGTAACCGACTTCACTaGCATCCAGTCGCCCGTCCT | + |
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Preference number: 4 (lower is better) Translates to: AVRSGCGPASVLGCYQWVSNRLH*HPVARP Trigger: AGGACGGGCGACTGGATGGCAGTGAAGTCGGTTACT...CACCCACTGATAGCATCCCAGCACTGACGCGGGGCCACATCCTGACCTAACCGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000019683.11 ENSMUST00000211352.2 |
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| CDS-3UTR CCA 90 bp | GAGAAGGTGACTGAGGGCCCAAGAACCAGGAACACCAGAGCTGAGTCTGTGTCCCGCCCAAGTCGGGCCTaGCTTTCCTCTGGGCTGAGT | + |
|
Preference number: 4 (lower is better) Translates to: EKVTEGPRTRNTRAESVSRPSRA*LSSGLS Trigger: ACTCAGCCCAGAGGAAAGCCAGGCCCGACTTGGGCG...GGACACAGACTCAGCTCTGGTGTTCCTGGTTCTTGGGCCCTCAGTCACCTTCTC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000019683.11 ENSMUST00000211352.2 |
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| CDS-3UTR CCA 90 bp | AGAACCAGGAACACCAGAGCTGAGTCTGTGTCCTGGGGGCGGGGCTGGCTGCAGCATAATGGCCATAGGTaGCATTGCGCAACTCCTCCC | + |
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Preference number: 4 (lower is better) Translates to: RTRNTRAESVSWGRGWLQHNGHR*HCATPP Trigger: GGGAGGAGTTGCGCAATGCCACCTATGGCCATTATG...CTGCAGCCAGCCCCGCCCCCAGGACACAGACTCAGCTCTGGTGTTCCTGGTTCT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000019683.11 ENSMUST00000209761.2 ENSMUST00000211352.2 |
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| CDS-3UTR CCA 90 bp | GGCCCCGCGTCAGTGCTGGGATGCTATCAGTGGGTGTCACTTATCTTTGAGTGCCTCTCATGCAGCAGGTaGTTGGCCTCCACCAGGGGC | + |
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Preference number: 4 (lower is better) Translates to: GPASVLGCYQWVSLIFECLSCSR*LASTRG Trigger: GCCCCTGGTGGAGGCCAACCACCTGCTGCATGAGAG...GCACTCAAAGATAAGTGACACCCACTGATAGCATCCCAGCACTGACGCGGGGCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000019683.11 ENSMUST00000211352.2 |
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| CDS-3UTR GCA 90 bp | GGCCCCGCGTCAGTGCTGGGATGCTATCAGTGGGTGTCACTTATCTTTGAGTGCCTGGCCATGAGGTCCTaGATCAGGGGATGGCTTCCC | + |
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Preference number: 4 (lower is better) Translates to: GPASVLGCYQWVSLIFECLAMRS*IRGWLP Trigger: GGGAAGCCATCCCCTGATGCAGGACCTCATGGCCAG...GCACTCAAAGATAAGTGACACCCACTGATAGCATCCCAGCACTGACGCGGGGCC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000019683.11 ENSMUST00000211352.2 |
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| CDS-3UTR GCA 90 bp | CGGTTGTCCCCCATGTGGTCATGTGGTCGGAAGTCTGAGAGACATGGGGATCAGTCACGGATGTGCCGCTaGTGTGTGTGCGCGATCCAC | + |
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Preference number: 4 (lower is better) Translates to: RLSPMWSCGRKSERHGDQSRMCR*CVCAIH Trigger: GTGGATCGCGCACACACAGCAGCGGCACATCCGTGA...CTGATCCCCATGTCTCTCAGACTTCCGACCACATGACCACATGGGGGACAACCG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000209761.2 |
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| CDS-3UTR GCA 90 bp | GGCCCCGCGTCAGTGCTGGGATGCTATCAGTGGGTGTCACTTATCTTTGAGTGCTCACGGATGTGCCGCTaGTGTGTGTGCGCGATCCAC | + |
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Preference number: 4 (lower is better) Translates to: GPASVLGCYQWVSLIFECSRMCR*CVCAIH Trigger: GTGGATCGCGCACACACAGCAGCGGCACATCCGTGA...GCACTCAAAGATAAGTGACACCCACTGATAGCATCCCAGCACTGACGCGGGGCC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000019683.11 ENSMUST00000211352.2 |
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| CDS-3UTR GCA 90 bp | CATGGTGCCTTGTCAGGTCCTCACCGTAGTTGGTGGCCTGGCTGCCCACAAACAGGCCATAGGTGGCATTaGGCAACTCCTCCCAACCCA | + |
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Preference number: 4 (lower is better) Translates to: HGALSGPHRSWWPGCPQTGHRWH*ATPPNP Trigger: TGGGTTGGGAGGAGTTGCGCAATGCCACCTATGGCC...TGTTTGTGGGCAGCCAGGCCACCAACTACGGTGAGGACCTGACAAGGCACCATG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000209761.2 ENSMUST00000211760.2 |
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| CDS-3UTR GCA 90 bp | CATGGTGCCTTGTCAGGTCCTCACCGTAGTTGGTGGCCTGGCTGCCCACAAACAGGGAACTCCTCCGGATaGAGAAAGGCCGTCAGCTCT | + |
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Preference number: 4 (lower is better) Translates to: HGALSGPHRSWWPGCPQTGNSSG*RKAVSS Trigger: AGAGCTGACGGCCTTTCTGCATCCGGAGGAGTTCCC...TGTTTGTGGGCAGCCAGGCCACCAACTACGGTGAGGACCTGACAAGGCACCATG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000209761.2 ENSMUST00000211760.2 |
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| CDS-3UTR GCA 90 bp | CATCATGGTGCCTTGTCAGGTCCTCACCGTAGTTGGTGGCCTGGCTGCCCACAAGGGAACTCCTCCGGATaGAGAAAGGCCGTCAGCTCT | + |
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Preference number: 4 (lower is better) Translates to: HHGALSGPHRSWWPGCPQGNSSG*RKAVSS Trigger: AGAGCTGACGGCCTTTCTGCATCCGGAGGAGTTCCC...TTGTGGGCAGCCAGGCCACCAACTACGGTGAGGACCTGACAAGGCACCATGATG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000209761.2 ENSMUST00000211760.2 |
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| CDS-3UTR GCA 90 bp | TGTCCCCCATGTGGTCATGTGGTCGGAAGTCTGAGAGACATGGGGATCAGAGCTTGCTGCCGCTCTGTCTaGACCCAGGCAGGTTCCTCC | + |
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Preference number: 4 (lower is better) Translates to: CPPCGHVVGSLRDMGIRACCRSV*TQAGSS Trigger: GGAGGAACCTGCCTGGGTGCAGACAGAGCGGCAGCA...AGCTCTGATCCCCATGTCTCTCAGACTTCCGACCACATGACCACATGGGGGACA 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000209761.2 |
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| CDS-3UTR TCA 90 bp | GGCCCCGCGTCAGTGCTGGGATGCTATCAGTGGGTGTCACTTATCTTTGAGTGCACCCTATCCTGGCCATaGGGTCCTGCATCAGGGGAT | + |
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Preference number: 4 (lower is better) Translates to: GPASVLGCYQWVSLIFECTLSWP*GPASGD Trigger: ATCCCCTGATGCAGGACCTCATGGCCAGGATAGGGT...GCACTCAAAGATAAGTGACACCCACTGATAGCATCCCAGCACTGACGCGGGGCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000019683.11 ENSMUST00000211352.2 |
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| CDS-3UTR GCA 90 bp | GTGGCCCCGCGTCAGTGCTGGGATGCTATCAGTGGGTGTCACTTATCTTTGAGTCTGGCCATGAGGTCCTaGATCAGGGGATGGCTTCCC | + |
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Preference number: 4 (lower is better) Translates to: VAPRQCWDAISGCHLSLSLAMRS*IRGWLP Trigger: GGGAAGCCATCCCCTGATGCAGGACCTCATGGCCAG...ACTCAAAGATAAGTGACACCCACTGATAGCATCCCAGCACTGACGCGGGGCCAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000019683.11 ENSMUST00000211352.2 |
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| CDS-3UTR GCA 90 bp | GCCCCGCGTCAGTGCTGGGATGCTATCAGTGGGTGTCACTTATCTTTGAGTGCCGGCCATAGGTGGCATTaGGCAACTCCTCCCAACCCA | + |
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Preference number: 4 (lower is better) Translates to: APRQCWDAISGCHLSLSAGHRWH*ATPPNP Trigger: TGGGTTGGGAGGAGTTGCGCAATGCCACCTATGGCC...GGCACTCAAAGATAAGTGACACCCACTGATAGCATCCCAGCACTGACGCGGGGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000019683.11 ENSMUST00000211352.2 |
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| CDS-3UTR GCA 90 bp | GGCCCCGCGTCAGTGCTGGGATGCTATCAGTGGGTGTCACTTATCTTTGAGTGCGGGAACTCCTCCGGATaGAGAAAGGCCGTCAGCTCT | + |
|
Preference number: 4 (lower is better) Translates to: GPASVLGCYQWVSLIFECGNSSG*RKAVSS Trigger: AGAGCTGACGGCCTTTCTGCATCCGGAGGAGTTCCC...GCACTCAAAGATAAGTGACACCCACTGATAGCATCCCAGCACTGACGCGGGGCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000019683.11 ENSMUST00000211352.2 |
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| CDS-3UTR GCA 90 bp | GCCCCGCGTCAGTGCTGGGATGCTATCAGTGGGTGTCACTTATCTTTGAGTGCCAACTCTCGGAACTGCTaGCGCTCTGTCTGCACCCAG | + |
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Preference number: 4 (lower is better) Translates to: APRQCWDAISGCHLSLSANSRNC*RSVCTQ Trigger: CTGGGTGCAGACAGAGCGGCAGCAGTTCCGAGAGTT...GGCACTCAAAGATAAGTGACACCCACTGATAGCATCCCAGCACTGACGCGGGGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000019683.11 ENSMUST00000211352.2 |
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| CDS-3UTR CCA 90 bp | GCCCCGCGTCAGTGCTGGGATGCTATCAGTGGGTGTCACTTATCTTTGAGTGCCCCTCACCGTAGTTGGTaGCCTGGCTGCCCACAAACA | + |
|
Preference number: 4 (lower is better) Translates to: APRQCWDAISGCHLSLSAPHRSW*PGCPQT Trigger: TGTTTGTGGGCAGCCAGGCCACCAACTACGGTGAGG...GGCACTCAAAGATAAGTGACACCCACTGATAGCATCCCAGCACTGACGCGGGGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000019683.11 ENSMUST00000211352.2 |
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| CDS-3UTR GCA 90 bp | CGGAAGTCTGAGAGACATGGGGATCAGAGCTCATCATGGTGCCTTGTCAGGTCCGGCCATAGGTGGCATTaGGCAACTCCTCCCAACCCA | + |
|
Preference number: 4 (lower is better) Translates to: RKSERHGDQSSSWCLVRSGHRWH*ATPPNP Trigger: TGGGTTGGGAGGAGTTGCGCAATGCCACCTATGGCC...GGACCTGACAAGGCACCATGATGAGCTCTGATCCCCATGTCTCTCAGACTTCCG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000209761.2 |
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| CDS-3UTR CCA 90 bp | GAGAAGGTGACTGAGGGCCCAAGAACCAGGAACACCAGAGCTGAGTCTGTGTCCGCCTCATGGTCGTACTaGAAATTCCCGTGGGCGTCA | + |
|
Preference number: 4 (lower is better) Translates to: EKVTEGPRTRNTRAESVSASWSY*KFPWAS Trigger: TGACGCCCACGGGAATTTCCAGTACGACCATGAGGC...GGACACAGACTCAGCTCTGGTGTTCCTGGTTCTTGGGCCCTCAGTCACCTTCTC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000019683.11 ENSMUST00000211352.2 |
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| CDS-3UTR CCA 90 bp | CATGGTGCCTTGTCAGGTCCTCACCGTAGTTGGTGGCCTGGCTGCCCACAAACACATAATGGCCATAGGTaGCATTGCGCAACTCCTCCC | + |
|
Preference number: 4 (lower is better) Translates to: HGALSGPHRSWWPGCPQTHNGHR*HCATPP Trigger: GGGAGGAGTTGCGCAATGCCACCTATGGCCATTATG...TGTTTGTGGGCAGCCAGGCCACCAACTACGGTGAGGACCTGACAAGGCACCATG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000209761.2 ENSMUST00000211760.2 |
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| CDS-3UTR CCA 90 bp | GGTGCCTTGTCAGGTCCTCACCGTAGTTGGTGGCCTGGCTGCCCACAAACATGTCATAATGGCCATAGGTaGCATTGCGCAACTCCTCCC | + |
|
Preference number: 4 (lower is better) Translates to: GALSGPHRSWWPGCPQTCHNGHR*HCATPP Trigger: GGGAGGAGTTGCGCAATGCCACCTATGGCCATTATG...ACATGTTTGTGGGCAGCCAGGCCACCAACTACGGTGAGGACCTGACAAGGCACC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000209761.2 ENSMUST00000211760.2 |
||
| CDS-3UTR GCA 90 bp | AGAGACATGGGGATCAGAGCTCATCATGGTGCCTTGTCAGGTCCTCACCGTAGTAACTCTCGGAACTGCTaGCGCTCTGTCTGCACCCAG | + |
|
Preference number: 4 (lower is better) Translates to: RDMGIRAHHGALSGPHRSNSRNC*RSVCTQ Trigger: CTGGGTGCAGACAGAGCGGCAGCAGTTCCGAGAGTT...ACTACGGTGAGGACCTGACAAGGCACCATGATGAGCTCTGATCCCCATGTCTCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000209761.2 |
||
| CDS-3UTR CCA 90 bp | GAGAAGGTGACTGAGGGCCCAAGAACCAGGAACACCAGAGCTGAGTCTGTGTCCCATAATGGCCATAGGTaGCATTGCGCAACTCCTCCC | + |
|
Preference number: 4 (lower is better) Translates to: EKVTEGPRTRNTRAESVSHNGHR*HCATPP Trigger: GGGAGGAGTTGCGCAATGCCACCTATGGCCATTATG...GGACACAGACTCAGCTCTGGTGTTCCTGGTTCTTGGGCCCTCAGTCACCTTCTC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000019683.11 ENSMUST00000209761.2 ENSMUST00000211352.2 |
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| CDS-3UTR TCA 90 bp | GCCCCGCGTCAGTGCTGGGATGCTATCAGTGGGTGTCACTTATCTTTGAGTGCCGGCTTTCCTCTGGGCTaGGTTTGTCAAATTCCTTGG | + |
|
Preference number: 4 (lower is better) Translates to: APRQCWDAISGCHLSLSAGFPLG*VCQIPW Trigger: CCAAGGAATTTGACAAACTCAGCCCAGAGGAAAGCC...GGCACTCAAAGATAAGTGACACCCACTGATAGCATCCCAGCACTGACGCGGGGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000019683.11 ENSMUST00000211352.2 |
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| CDS-3UTR CCA 90 bp | GCTCCTAGGCAGGACAGGTTAGCTTGTGCTGTTGACATTCAGAGTTCAAATTGCTCCTGCATCAGGGGATaGCTTCCCGAGGGCCCAGTG | + |
|
Preference number: 4 (lower is better) Translates to: APRQDRLACAVDIQSSNCSCIRG*LPEGPV Trigger: CACTGGGCCCTCGGGAAGCCATCCCCTGATGCAGGA...GCAATTTGAACTCTGAATGTCAACAGCACAAGCTAACCTGTCCTGCCTAGGAGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000019683.11 ENSMUST00000211352.2 |
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| CDS-3UTR CCA 90 bp | GGCCCCGCGTCAGTGCTGGGATGCTATCAGTGGGTGTCACTTATCTTTGAGTGCGTTTGTCAAATTCCTTaGCCACGTCTCGTCCCAGGA | + |
|
Preference number: 4 (lower is better) Translates to: GPASVLGCYQWVSLIFECVCQIP*PRLVPG Trigger: TCCTGGGACGAGACGTGGCCAAGGAATTTGACAAAC...GCACTCAAAGATAAGTGACACCCACTGATAGCATCCCAGCACTGACGCGGGGCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000019683.11 ENSMUST00000211352.2 |
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| CDS-3UTR GCA 90 bp | GCTCCTAGGCAGGACAGGTTAGCTTGTGCTGTTGACATTCAGAGTTCAAATTGCTCCGTGTCGCTCTCATaGAGCAGGTGGTTGGCCTCC | + |
|
Preference number: 4 (lower is better) Translates to: APRQDRLACAVDIQSSNCSVSLS*SRWLAS Trigger: GGAGGCCAACCACCTGCTGCATGAGAGCGACACGGA...GCAATTTGAACTCTGAATGTCAACAGCACAAGCTAACCTGTCCTGCCTAGGAGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000019683.11 ENSMUST00000211352.2 |
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| CDS-3UTR CCA 90 bp | GTGGCCCCGCGTCAGTGCTGGGATGCTATCAGTGGGTGTCACTTATCTTTGAGTGTTTGTCAAATTCCTTaGCCACGTCTCGTCCCAGGA | + |
|
Preference number: 4 (lower is better) Translates to: VAPRQCWDAISGCHLSLSVCQIP*PRLVPG Trigger: TCCTGGGACGAGACGTGGCCAAGGAATTTGACAAAC...ACTCAAAGATAAGTGACACCCACTGATAGCATCCCAGCACTGACGCGGGGCCAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000019683.11 ENSMUST00000211352.2 |
||
| CDS-3UTR TCA 90 bp | GCTCCTAGGCAGGACAGGTTAGCTTGTGCTGTTGACATTCAGAGTTCAAATTGCACCCTATCCTGGCCATaGGGTCCTGCATCAGGGGAT | + |
|
Preference number: 4 (lower is better) Translates to: APRQDRLACAVDIQSSNCTLSWP*GPASGD Trigger: ATCCCCTGATGCAGGACCTCATGGCCAGGATAGGGT...GCAATTTGAACTCTGAATGTCAACAGCACAAGCTAACCTGTCCTGCCTAGGAGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000019683.11 ENSMUST00000211352.2 |
||
| CDS-3UTR GCA 90 bp | GCTCCTAGGCAGGACAGGTTAGCTTGTGCTGTTGACATTCAGAGTTCAAATTGCAGTAACCGACTTCACTaGCATCCAGTCGCCCGTCCT | + |
|
Preference number: 4 (lower is better) Translates to: APRQDRLACAVDIQSSNCSNRLH*HPVARP Trigger: AGGACGGGCGACTGGATGGCAGTGAAGTCGGTTACT...GCAATTTGAACTCTGAATGTCAACAGCACAAGCTAACCTGTCCTGCCTAGGAGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000019683.11 ENSMUST00000211352.2 |
||
| CDS-3UTR GCA 90 bp | GTGGCCCCGCGTCAGTGCTGGGATGCTATCAGTGGGTGTCACTTATCTTTGAGTCAAACATGTTCCAGTTaGTCAAGATCTCAGCTTTGC | + |
|
Preference number: 4 (lower is better) Translates to: VAPRQCWDAISGCHLSLSQTCSS*SRSQLC Trigger: GCAAAGCTGAGATCTTGAGCAACTGGAACATGTTTG...ACTCAAAGATAAGTGACACCCACTGATAGCATCCCAGCACTGACGCGGGGCCAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000019683.11 ENSMUST00000211352.2 |
||
| CDS-3UTR TCA 90 bp | GCTCCTAGGCAGGACAGGTTAGCTTGTGCTGTTGACATTCAGAGTTCAAATTGCGGCTTTCCTCTGGGCTaGGTTTGTCAAATTCCTTGG | + |
|
Preference number: 4 (lower is better) Translates to: APRQDRLACAVDIQSSNCGFPLG*VCQIPW Trigger: CCAAGGAATTTGACAAACTCAGCCCAGAGGAAAGCC...GCAATTTGAACTCTGAATGTCAACAGCACAAGCTAACCTGTCCTGCCTAGGAGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000019683.11 ENSMUST00000211352.2 |
||
| CDS GCA 90 bp | CCAACCCACGCGCCCGTCGCGGTCCGTGTCGTAGGTGTGCCAGGCTaGGCTCACCGAGTCACGGATGTGCCGCTGCTGTGTGTGCGCGAT | + |
|
Preference number: 5 (lower is better) Translates to: PTHAPVAVRVVGVPG*AHRVTDVPLLCVRD Trigger: ATCGCGCACACACAGCAGCGGCACATCCGTGACTCGGTGAGCGCAGCCTGGCACACCTACGACACGGACCGCGACGGGCGCGTGGGTTGG 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000019683.11 ENSMUST00000209761.2 ENSMUST00000210469.2 ENSMUST00000210734.2 ENSMUST00000211352.2 |
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| CDS GCA 90 bp | TGCCAGGCTGCGCTCACCGAGTCACGGATGTGCCGCTGCTGTGTGTaGGCGATCCACGCGCGGAGCTCAGCTAAGGACACCCAGCCGTCG | + |
|
Preference number: 5 (lower is better) Translates to: CQAALTESRMCRCCV*AIHARSSAKDTQPS Trigger: CGACGGCTGGGTGTCCTTAGCTGAGCTCCGCGCGTGGATCGCGCACACACAGCAGCGGCACATCCGTGACTCGGTGAGCGCAGCCTGGCA 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000019683.11 ENSMUST00000209761.2 ENSMUST00000210469.2 ENSMUST00000210734.2 ENSMUST00000211352.2 |
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| CDS CCA 90 bp | TCAGCCGGCCATCCTTGTCCGTGTCGCTCTCATGCAGCAGGTGGTTaGCCTCCACCAGGGGCTGGTCCTGGGATGGAGGCAGCACCCAGT | + |
|
Preference number: 5 (lower is better) Translates to: SAGHPCPCRSHAAGG*PPPGAGPGMEAAPS Trigger: ACTGGGTGCTGCCTCCATCCCAGGACCAGCCCCTGGTGGAGGCCAACCACCTGCTGCATGAGAGCGACACGGACAAGGATGGCCGGCTGA 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000019683.11 ENSMUST00000211352.2 |
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| CDS CCA 90 bp | CCTCCACATCATGAAACTCCTCTCCGGGCTCATAATGGCCATAGGTaGCATTGCGCAACTCCTCCCAACCCACGCGCCCGTCGCGGTCCG | + |
|
Preference number: 5 (lower is better) Translates to: PPHHETPLRAHNGHR*HCATPPNPRARRGP Trigger: CGGACCGCGACGGGCGCGTGGGTTGGGAGGAGTTGCGCAATGCCACCTATGGCCATTATGAGCCCGGAGAGGAGTTTCATGATGTGGAGG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENSMUST00000019683.11 ENSMUST00000209761.2 ENSMUST00000210469.2 ENSMUST00000210734.2 ENSMUST00000211352.2 ENSMUST00000211760.2 |
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| CDS GCA 90 bp | CATCATGAAACTCCTCTCCGGGCTCATAATGGCCATAGGTGGCATTaGGCAACTCCTCCCAACCCACGCGCCCGTCGCGGTCCGTGTCGT | + |
|
Preference number: 5 (lower is better) Translates to: HHETPLRAHNGHRWH*ATPPNPRARRGPCR Trigger: ACGACACGGACCGCGACGGGCGCGTGGGTTGGGAGGAGTTGCGCAATGCCACCTATGGCCATTATGAGCCCGGAGAGGAGTTTCATGATG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENSMUST00000019683.11 ENSMUST00000209761.2 ENSMUST00000210469.2 ENSMUST00000210734.2 ENSMUST00000211352.2 ENSMUST00000211760.2 |
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| CDS TCA 90 bp | TGCGGTCTACGATCCGCCCAAGTCGGGCCTGGCTTTCCTCTGGGCTaGGTTTGTCAAATTCCTTGGCCACGTCTCGTCCCAGGAACGCCT | + |
|
Preference number: 5 (lower is better) Translates to: CGLRSAQVGPGFPLG*VCQIPWPRLVPGTP Trigger: AGGCGTTCCTGGGACGAGACGTGGCCAAGGAATTTGACAAACTCAGCCCAGAGGAAAGCCAGGCCCGACTTGGGCGGATCGTAGACCGCA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000019683.11 ENSMUST00000210469.2 ENSMUST00000210527.2 ENSMUST00000210734.2 ENSMUST00000211352.2 |
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| CDS-3UTR CAA 90 bp | AGAACCAGGAACACCAGAGCTGAGTCTGTGTCCTGGGGGCGGGGCTGGCTGCAGTCCTCTGGGCTGAGTTaGTCAAATTCCTTGGCCACG | + |
|
Preference number: 5 (lower is better) Translates to: RTRNTRAESVSWGRGWLQSSGLS*SNSLAT Trigger: CGTGGCCAAGGAATTTGACAAACTCAGCCCAGAGGA...CTGCAGCCAGCCCCGCCCCCAGGACACAGACTCAGCTCTGGTGTTCCTGGTTCT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000019683.11 ENSMUST00000211352.2 |
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| CDS-3UTR CAA 90 bp | CCCCGCGGTTGTCCCCCATGTGGTCATGTGGTCGGAAGTCTGAGAGACATGGGGTCCTCTGGGCTGAGTTaGTCAAATTCCTTGGCCACG | + |
|
Preference number: 5 (lower is better) Translates to: PRGCPPCGHVVGSLRDMGSSGLS*SNSLAT Trigger: CGTGGCCAAGGAATTTGACAAACTCAGCCCAGAGGA...CCCCATGTCTCTCAGACTTCCGACCACATGACCACATGGGGGACAACCGCGGGG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000019683.11 ENSMUST00000211352.2 |
||
| CDS-3UTR CAA 90 bp | AGGTCAGGATGTGGCCCCGCGTCAGTGCTGGGATGCTATCAGTGGGTGTCACTTAGTTTGTCAAATTCCTaGGCCACGTCTCGTCCCAGG | + |
|
Preference number: 5 (lower is better) Translates to: RSGCGPASVLGCYQWVSLSLSNS*ATSRPR Trigger: CCTGGGACGAGACGTGGCCAAGGAATTTGACAAACT...AAGTGACACCCACTGATAGCATCCCAGCACTGACGCGGGGCCACATCCTGACCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000019683.11 ENSMUST00000211352.2 |
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| CDS-3UTR CAA 90 bp | GCCCCGCGTCAGTGCTGGGATGCTATCAGTGGGTGTCACTTATCTTTGAGTGCCGCTCATCATGGTGCCTaGTCAGGTCCTCACCGTAGT | + |
|
Preference number: 5 (lower is better) Translates to: APRQCWDAISGCHLSLSAAHHGA*SGPHRS Trigger: ACTACGGTGAGGACCTGACAAGGCACCATGATGAGC...GGCACTCAAAGATAAGTGACACCCACTGATAGCATCCCAGCACTGACGCGGGGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000019683.11 ENSMUST00000211352.2 |
||
| CDS-3UTR CAA 90 bp | GCTCCTAGGCAGGACAGGTTAGCTTGTGCTGTTGACATTCAGAGTTCAAATTGCAGTTTGTCAAATTCCTaGGCCACGTCTCGTCCCAGG | + |
|
Preference number: 5 (lower is better) Translates to: APRQDRLACAVDIQSSNCSLSNS*ATSRPR Trigger: CCTGGGACGAGACGTGGCCAAGGAATTTGACAAACT...GCAATTTGAACTCTGAATGTCAACAGCACAAGCTAACCTGTCCTGCCTAGGAGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000019683.11 ENSMUST00000211352.2 |
||
| CDS GCA 72 bp | TGCCAGGCTGCGCTCACCGAGTCACGGATGTGCCGCTaGTGTGTGTGCGCGATCCACGCGCGGAGCTCAGCT | + |
|
Preference number: 6 (lower is better) Translates to: CQAALTESRMCR*CVCAIHARSSA Trigger: AGCTGAGCTCCGCGCGTGGATCGCGCACACACAGCAGCGGCACATCCGTGACTCGGTGAGCGCAGCCTGGCA 68% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000019683.11 ENSMUST00000209761.2 ENSMUST00000210469.2 ENSMUST00000210734.2 ENSMUST00000211352.2 |
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| CDS GCA 72 bp | GCGCTCACCGAGTCACGGATGTGCCGCTGCTGTGTGTaGGCGATCCACGCGCGGAGCTCAGCTAAGGACACC | + |
|
Preference number: 6 (lower is better) Translates to: ALTESRMCRCCV*AIHARSSAKDT Trigger: GGTGTCCTTAGCTGAGCTCCGCGCGTGGATCGCGCACACACAGCAGCGGCACATCCGTGACTCGGTGAGCGC 67% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000019683.11 ENSMUST00000209761.2 ENSMUST00000210469.2 ENSMUST00000210734.2 ENSMUST00000211352.2 |
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| CDS GCA 72 bp | AGGACACCCAGCCGTCGCTGTCCCCAGCAAGATCCATaGGGTCTACGATCCGCCCAAGTCGGGCCTGGCTTT | + |
|
Preference number: 6 (lower is better) Translates to: RTPSRRCPQQDP*GLRSAQVGPGF Trigger: AAAGCCAGGCCCGACTTGGGCGGATCGTAGACCGCATGGATCTTGCTGGGGACAGCGACGGCTGGGTGTCCT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000019683.11 ENSMUST00000210469.2 ENSMUST00000210527.2 ENSMUST00000210734.2 ENSMUST00000211352.2 |
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| CDS GCA 72 bp | ACTCCTCTCCGGGCTCATAATGGCCATAGGTGGCATTaGGCAACTCCTCCCAACCCACGCGCCCGTCGCGGT | + |
|
Preference number: 6 (lower is better) Translates to: TPLRAHNGHRWH*ATPPNPRARRG Trigger: ACCGCGACGGGCGCGTGGGTTGGGAGGAGTTGCGCAATGCCACCTATGGCCATTATGAGCCCGGAGAGGAGT 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENSMUST00000019683.11 ENSMUST00000209761.2 ENSMUST00000210469.2 ENSMUST00000210734.2 ENSMUST00000211352.2 ENSMUST00000211760.2 |
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| CDS GCA 72 bp | GGTTCCATGATGGACCCTATCCTGGCCATGAGGTCCTaGATCAGGGGATGGCTTCCCGAGGGCCCAGTGCCT | + |
|
Preference number: 6 (lower is better) Translates to: GSMMDPILAMRS*IRGWLPEGPVP Trigger: AGGCACTGGGCCCTCGGGAAGCCATCCCCTGATGCAGGACCTCATGGCCAGGATAGGGTCCATCATGGAACC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000019683.11 ENSMUST00000210469.2 ENSMUST00000210527.2 ENSMUST00000210734.2 ENSMUST00000211352.2 |
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| CDS GCA 72 bp | CCTGGGATGGAGGCAGCACCCAGTAACCGACTTCACTaGCATCCAGTCGCCCGTCCTTGTTCAGATCCCGGA | + |
|
Preference number: 6 (lower is better) Translates to: PGMEAAPSNRLH*HPVARPCSDPG Trigger: TCCGGGATCTGAACAAGGACGGGCGACTGGATGGCAGTGAAGTCGGTTACTGGGTGCTGCCTCCATCCCAGG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000019683.11 ENSMUST00000210734.2 ENSMUST00000211352.2 |
||
| CDS CCA 72 bp | CATGAAACTCCTCTCCGGGCTCATAATGGCCATAGGTaGCATTGCGCAACTCCTCCCAACCCACGCGCCCGT | + |
|
Preference number: 6 (lower is better) Translates to: HETPLRAHNGHR*HCATPPNPRAR Trigger: ACGGGCGCGTGGGTTGGGAGGAGTTGCGCAATGCCACCTATGGCCATTATGAGCCCGGAGAGGAGTTTCATG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENSMUST00000019683.11 ENSMUST00000209761.2 ENSMUST00000210469.2 ENSMUST00000210734.2 ENSMUST00000211352.2 ENSMUST00000211760.2 |
||
| CDS CAA 72 bp | CGCCCAAGTCGGGCCTGGCTTTCCTCTGGGCTGAGTTaGTCAAATTCCTTGGCCACGTCTCGTCCCAGGAAC | + |
|
Preference number: 6 (lower is better) Translates to: RPSRAWLSSGLS*SNSLATSRPRN Trigger: GTTCCTGGGACGAGACGTGGCCAAGGAATTTGACAAACTCAGCCCAGAGGAAAGCCAGGCCCGACTTGGGCG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000019683.11 ENSMUST00000210469.2 ENSMUST00000210527.2 ENSMUST00000210734.2 ENSMUST00000211352.2 |
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| CDS CAA 90 bp | TCTACGATCCGCCCAAGTCGGGCCTGGCTTTCCTCTGGGCTGAGTTaGTCAAATTCCTTGGCCACGTCTCGTCCCAGGAACGCCTCATGG | + |
|
Preference number: 6 (lower is better) Translates to: STIRPSRAWLSSGLS*SNSLATSRPRNASW Trigger: CCATGAGGCGTTCCTGGGACGAGACGTGGCCAAGGAATTTGACAAACTCAGCCCAGAGGAAAGCCAGGCCCGACTTGGGCGGATCGTAGA 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000019683.11 ENSMUST00000210469.2 ENSMUST00000210527.2 ENSMUST00000210734.2 ENSMUST00000211352.2 |
||
| CDS CAA 72 bp | GCCTGGCTTTCCTCTGGGCTGAGTTTGTCAAATTCCTaGGCCACGTCTCGTCCCAGGAACGCCTCATGGTCG | + |
|
Preference number: 6 (lower is better) Translates to: AWLSSGLSLSNS*ATSRPRNASWS Trigger: CGACCATGAGGCGTTCCTGGGACGAGACGTGGCCAAGGAATTTGACAAACTCAGCCCAGAGGAAAGCCAGGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000019683.11 ENSMUST00000210469.2 ENSMUST00000210527.2 ENSMUST00000210734.2 ENSMUST00000211352.2 |
||
| CDS CCA 72 bp | AGATCCATGCGGTCTACGATCCGCCCAAGTCGGGCCTaGCTTTCCTCTGGGCTGAGTTTGTCAAATTCCTTG | + |
|
Preference number: 6 (lower is better) Translates to: RSMRSTIRPSRA*LSSGLSLSNSL Trigger: CAAGGAATTTGACAAACTCAGCCCAGAGGAAAGCCAGGCCCGACTTGGGCGGATCGTAGACCGCATGGATCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000019683.11 ENSMUST00000210469.2 ENSMUST00000210527.2 ENSMUST00000210734.2 ENSMUST00000211352.2 |
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