Pregenerated sensors for RCN2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000032320Ensembl transcript IDs: ENSMUST00000114276.3, ENSMUST00000147842.2
Found 78 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | TCCAGAGCAGTGTTCTCATCAAAGTCAATCACCCGGTCGTACATCTaGATGTTGTACTCATCCCACGTCACAGCGCCGTCGCTGTTCTTA | + |
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Preference number: 1 (lower is better) Translates to: SRAVFSSKSITRSYI*MLYSSHVTAPSLFL Trigger: TAAGAACAGCGACGGCGCTGTGACGTGGGATGAGTACAACATCCAGATGTACGACCGGGTGATTGACTTTGATGAGAACACTGCTCTGGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000147842.2 |
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| 3UTR CCA 90 bp | CATCAATCAGATGAAGAGCTTCCTCTTGTGCAATGCCCTGGTTATTaGGCACTACCCATGACAACAGCTCTTGGGGATCAAGCCGGCCAT | + |
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Preference number: 1 (lower is better) Translates to: HQSDEELPLVQCPGY*ALPMTTALGDQAGH Trigger: ATGGCCGGCTTGATCCCCAAGAGCTGTTGTCATGGGTAGTGCCCAATAACCAGGGCATTGCACAAGAGGAAGCTCTTCATCTGATTGATG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000147842.2 |
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| 3UTR TCA 90 bp | AAGAGCTTCCTCTTGTGCAATGCCCTGGTTATTGGGCACTACCCATaGCAACAGCTCTTGGGGATCAAGCCGGCCATCATTATCTTTGTC | + |
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Preference number: 1 (lower is better) Translates to: KSFLLCNALVIGHYP*QQLLGIKPAIIIFV Trigger: GACAAAGATAATGATGGCCGGCTTGATCCCCAAGAGCTGTTGTCATGGGTAGTGCCCAATAACCAGGGCATTGCACAAGAGGAAGCTCTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000147842.2 |
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| 3UTR CCA 90 bp | ATGACGAAATCCAATTGTCTGGGTGTGGATAAGCGCTCAGTGAGGTaGCTCTCAGCTTCCACAAGGCTTAAGGTTATCTCTGGGGCTAAA | + |
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Preference number: 1 (lower is better) Translates to: MTKSNCLGVDKRSVR*LSASTRLKVISGAK Trigger: TTTAGCCCCAGAGATAACCTTAAGCCTTGTGGAAGCTGAGAGCCACCTCACTGAGCGCTTATCCACACCCAGACAATTGGATTTCGTCAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000147842.2 |
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| 3UTR GCA 90 bp | TCAAATCCATCTCATCAATCAGATGAAGAGCTTCCTCTTGTGCAATaGCCTGGTTATTGGGCACTACCCATGACAACAGCTCTTGGGGAT | + |
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Preference number: 1 (lower is better) Translates to: SNPSHQSDEELPLVQ*PGYWALPMTTALGD Trigger: ATCCCCAAGAGCTGTTGTCATGGGTAGTGCCCAATAACCAGGGCATTGCACAAGAGGAAGCTCTTCATCTGATTGATGAGATGGATTTGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000147842.2 |
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| 3UTR TCA 90 bp | TTGCTCTCTGTTGGGTTGTTTGGTGGTTTACTTCTGCTGGGGTTATaGATCAGAATGGCTGAAGGAGCAGAGACCAAAGACTATCAACTA | + |
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Preference number: 1 (lower is better) Translates to: LLSVGLFGGLLLLGL*IRMAEGAETKDYQL Trigger: TAGTTGATAGTCTTTGGTCTCTGCTCCTTCAGCCATTCTGATTCATAACCCCAGCAGAAGTAAACCACCAAACAACCCAACAGAGAGCAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000147842.2 |
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| 3UTR TCA 90 bp | GTCTCAGAAAACTCTCTACTTTCCTCCACTCTAACAAAGGCATGCTaGTACTTGAATATGACGAAATCCAATTGTCTGGGTGTGGATAAG | + |
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Preference number: 1 (lower is better) Translates to: VSENSLLSSTLTKAC*YLNMTKSNCLGVDK Trigger: CTTATCCACACCCAGACAATTGGATTTCGTCATATTCAAGTATCAGCATGCCTTTGTTAGAGTGGAGGAAAGTAGAGAGTTTTCTGAGAC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000147842.2 |
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| 3UTR CCA 90 bp | GTCATAATCATTCACAAATCTGTCCTTTTCAACAAGTATCCATTCTaGGTCTTCATTTGCAGTTGGATCCCGCCTGTAATCGCCAAGAAA | + |
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Preference number: 1 (lower is better) Translates to: VIIIHKSVLFNKYPF*VFICSWIPPVIAKK Trigger: TTTCTTGGCGATTACAGGCGGGATCCAACTGCAAATGAAGACCCAGAATGGATACTTGTTGAAAAGGACAGATTTGTGAATGATTATGAC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000147842.2 |
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| 3UTR CAA 90 bp | GCAGTGTTCTCATCAAAGTCAATCACCCGGTCGTACATCTGGATGTaGTACTCATCCCACGTCACAGCGCCGTCGCTGTTCTTATCATAC | + |
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Preference number: 2 (lower is better) Translates to: AVFSSKSITRSYIWM*YSSHVTAPSLFLSY Trigger: GTATGATAAGAACAGCGACGGCGCTGTGACGTGGGATGAGTACAACATCCAGATGTACGACCGGGTGATTGACTTTGATGAGAACACTGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000147842.2 |
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| 3UTR-3UTR TCA 90 bp | CACAAGAGTGGGCTTCGTGCTCTCAGTGTTTCCCTGGAACAGGATCATCTCTTTGGTGCTCAAACGCAATaGACTCTTCAAGACTCAGAC | + |
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Preference number: 2 (lower is better) Translates to: HKSGLRALSVSLEQDHLFGAQTQ*TLQDSD Trigger: GTCTGAGTCTTGAAGAGTTCATTGCGTTTGAGCACC...AAAGAGATGATCCTGTTCCAGGGAAACACTGAGAGCACGAAGCCCACTCTTGTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000147842.2 |
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| 3UTR-3UTR CCA 90 bp | ACACAGCACTACATAGATGGAGTACTTAGGAAAGACTGTGTGGTCATATGGCACTCTTGTGCAATGCCCTaGTTATTGGGCACTACCCAT | + |
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Preference number: 2 (lower is better) Translates to: TQHYIDGVLRKDCVVIWHSCAMP*LLGTTH Trigger: ATGGGTAGTGCCCAATAACCAGGGCATTGCACAAGA...GTGCCATATGACCACACAGTCTTTCCTAAGTACTCCATCTATGTAGTGCTGTGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000147842.2 |
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| 3UTR-3UTR TCA 90 bp | CACAAGAGTGGGCTTCGTGCTCTCAGTGTTTCCCTGGAACAGGATCATCTCTTTCTAACAAAGGCATGCTaGTACTTGAATATGACGAAA | + |
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Preference number: 2 (lower is better) Translates to: HKSGLRALSVSLEQDHLFLTKAC*YLNMTK Trigger: TTTCGTCATATTCAAGTATCAGCATGCCTTTGTTAG...AAAGAGATGATCCTGTTCCAGGGAAACACTGAGAGCACGAAGCCCACTCTTGTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000147842.2 |
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| 3UTR-3UTR TCA 90 bp | GGGGTGTATGATATGAATCCACGAAGAATCAATAAGACATTAAAAGAACAGTGTCCTTCAAGCCCCCAGTaGCTGCTGTTTTGCTCTCTG | + |
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Preference number: 2 (lower is better) Translates to: GVYDMNPRRINKTLKEQCPSSPQ*LLFCSL Trigger: CAGAGAGCAAAACAGCAGTCACTGGGGGCTTGAAGG...ACACTGTTCTTTTAATGTCTTATTGATTCTTCGTGGATTCATATCATACACCCC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000147842.2 |
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| 3UTR-3UTR GCA 90 bp | AGACCAGGACCTGAATCCTGGTTAGCTTTTTCAAATCGCTTCTTATCCTTTAGATACTCCACAAACTGCTaGTTGGCTTCTTGCATAGCG | + |
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Preference number: 2 (lower is better) Translates to: RPGPESWLAFSNRFLSFRYSTNC*LASCIA Trigger: CGCTATGCAAGAAGCCAAGCAGCAGTTTGTGGAGTA...TCTAAAGGATAAGAAGCGATTTGAAAAAGCTAACCAGGATTCAGGTCCTGGTCT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000147842.2 |
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| 3UTR-3UTR CCA 90 bp | CACAAGAGTGGGCTTCGTGCTCTCAGTGTTTCCCTGGAACAGGATCATCTCTTTTCTTCATTTAGAATCTaGTCTCAGAAAACTCTCTAC | + |
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Preference number: 2 (lower is better) Translates to: HKSGLRALSVSLEQDHLFSSFRI*SQKTLY Trigger: GTAGAGAGTTTTCTGAGACCAGATTCTAAATGAAGA...AAAGAGATGATCCTGTTCCAGGGAAACACTGAGAGCACGAAGCCCACTCTTGTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000147842.2 |
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| 3UTR CAA 90 bp | GACCAAAGACTATCAACTACAATGCTAGTAATAGCTCAGTCTCCCTaGCCTTCCTCACCCCTGATTAGCTTGAATCGTGTTTTGTATTAC | + |
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Preference number: 2 (lower is better) Translates to: DQRLSTTMLVIAQSP*PSSPLISLNRVLYY Trigger: GTAATACAAAACACGATTCAAGCTAATCAGGGGTGAGGAAGGCAAGGGAGACTGAGCTATTACTAGCATTGTAGTTGATAGTCTTTGGTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000147842.2 |
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| 3UTR-3UTR CCA 90 bp | AAGACTATCAACTACAATGCTAGTAATAGCTCAGTCTCCCTTGCCTTCCTCACCAACAAGTATCCATTCTaGGTCTTCATTTGCAGTTGG | + |
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Preference number: 2 (lower is better) Translates to: KTINYNASNSSVSLAFLTNKYPF*VFICSW Trigger: CCAACTGCAAATGAAGACCCAGAATGGATACTTGTT...GGTGAGGAAGGCAAGGGAGACTGAGCTATTACTAGCATTGTAGTTGATAGTCTT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000147842.2 |
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| 3UTR-3UTR CCA 90 bp | ACACAGCACTACATAGATGGAGTACTTAGGAAAGACTGTGTGGTCATATGGCACTTAGGAAAGACTGTGTaGTCATATGGCACAACATTA | + |
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Preference number: 2 (lower is better) Translates to: TQHYIDGVLRKDCVVIWHLGKTV*SYGTTL Trigger: TAATGTTGTGCCATATGACCACACAGTCTTTCCTAA...GTGCCATATGACCACACAGTCTTTCCTAAGTACTCCATCTATGTAGTGCTGTGT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000114276.3 ENSMUST00000147842.2 |
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| 3UTR-3UTR TCA 90 bp | GGGGTGTATGATATGAATCCACGAAGAATCAATAAGACATTAAAAGAACAGTGTACTCAGACCAGGACCTaGATCCTGGTTAGCTTTTTC | + |
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Preference number: 2 (lower is better) Translates to: GVYDMNPRRINKTLKEQCTQTRT*ILVSFF Trigger: GAAAAAGCTAACCAGGATTCAGGTCCTGGTCTGAGT...ACACTGTTCTTTTAATGTCTTATTGATTCTTCGTGGATTCATATCATACACCCC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000147842.2 |
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| 3UTR-3UTR CCA 90 bp | AGTTTCAAAAGTAAGTCTACTAGTACAAGAACGAAAACTGACAGCTTCATCACGCCAGGACCTGAATCCTaGTTAGCTTTTTCAAATCGC | + |
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Preference number: 2 (lower is better) Translates to: SFKSKSTSTRTKTDSFITPGPES*LAFSNR Trigger: GCGATTTGAAAAAGCTAACCAGGATTCAGGTCCTGG...CGTGATGAAGCTGTCAGTTTTCGTTCTTGTACTAGTAGACTTACTTTTGAAACT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000147842.2 |
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| 3UTR-3UTR CCA 90 bp | TCTACATTTAGATCATCTGAAGTGGTAAGACTTAAGAGTGTAAAGGACAACATCCAATGCCCTGGTTATTaGGCACTACCCATGACAACA | + |
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Preference number: 2 (lower is better) Translates to: STFRSSEVVRLKSVKDNIQCPGY*ALPMTT Trigger: TGTTGTCATGGGTAGTGCCCAATAACCAGGGCATTG...GATGTTGTCCTTTACACTCTTAAGTCTTACCACTTCAGATGATCTAAATGTAGA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000147842.2 |
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| 3UTR TCA 72 bp | CTCTTGTGCAATGCCCTGGTTATTGGGCACTACCCATaGCAACAGCTCTTGGGGATCAAGCCGGCCATCATT | + |
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Preference number: 3 (lower is better) Translates to: LLCNALVIGHYP*QQLLGIKPAII Trigger: AATGATGGCCGGCTTGATCCCCAAGAGCTGTTGTCATGGGTAGTGCCCAATAACCAGGGCATTGCACAAGAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000147842.2 |
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| 3UTR CCA 72 bp | GTGTTCTCATCAAAGTCAATCACCCGGTCGTACATCTaGATGTTGTACTCATCCCACGTCACAGCGCCGTCG | + |
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Preference number: 3 (lower is better) Translates to: VFSSKSITRSYI*MLYSSHVTAPS Trigger: CGACGGCGCTGTGACGTGGGATGAGTACAACATCCAGATGTACGACCGGGTGATTGACTTTGATGAGAACAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000147842.2 |
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| 3UTR CCA 72 bp | AAGAGAGTTCAGGTAGACCAGCCGTTCACACAAGAGTaGGCTTCGTGCTCTCAGTGTTTCCCTGGAACAGGA | + |
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Preference number: 3 (lower is better) Translates to: KRVQVDQPFTQE*ASCSQCFPGTG Trigger: TCCTGTTCCAGGGAAACACTGAGAGCACGAAGCCCACTCTTGTGTGAACGGCTGGTCTACCTGAACTCTCTT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000147842.2 |
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| 3UTR TCA 72 bp | CGAAATCCAATTGTCTGGGTGTGGATAAGCGCTCAGTaGGGTGGCTCTCAGCTTCCACAAGGCTTAAGGTTA | + |
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Preference number: 3 (lower is better) Translates to: RNPIVWVWISAQ*GGSQLPQGLRL Trigger: TAACCTTAAGCCTTGTGGAAGCTGAGAGCCACCTCACTGAGCGCTTATCCACACCCAGACAATTGGATTTCG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000147842.2 |
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| 3UTR CCA 72 bp | TCCAATTGTCTGGGTGTGGATAAGCGCTCAGTGAGGTaGCTCTCAGCTTCCACAAGGCTTAAGGTTATCTCT | + |
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Preference number: 3 (lower is better) Translates to: SNCLGVDKRSVR*LSASTRLKVIS Trigger: AGAGATAACCTTAAGCCTTGTGGAAGCTGAGAGCCACCTCACTGAGCGCTTATCCACACCCAGACAATTGGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000147842.2 |
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| 3UTR CCA 72 bp | TTCAGTAGCTGTCTATTATGTGCTAATCACTGGGCCTaGAAGATGCGACAGCGAAGACAGCAGAACCTCCAG | + |
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Preference number: 3 (lower is better) Translates to: FSSCLLCANHWA*KMRQRRQQNLQ Trigger: CTGGAGGTTCTGCTGTCTTCGCTGTCGCATCTTCCAGGCCCAGTGATTAGCACATAATAGACAGCTACTGAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000147842.2 |
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| 3UTR-3UTR CAA 90 bp | ACACAGCACTACATAGATGGAGTACTTAGGAAAGACTGTGTGGTCATATGGCACGCAATGCCCTGGTTATaGGGCACTACCCATGACAAC | + |
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Preference number: 3 (lower is better) Translates to: TQHYIDGVLRKDCVVIWHAMPWL*GTTHDN Trigger: GTTGTCATGGGTAGTGCCCAATAACCAGGGCATTGC...GTGCCATATGACCACACAGTCTTTCCTAAGTACTCCATCTATGTAGTGCTGTGT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000147842.2 |
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| 3UTR TCA 72 bp | GTTGGGTTGTTTGGTGGTTTACTTCTGCTGGGGTTATaGATCAGAATGGCTGAAGGAGCAGAGACCAAAGAC | + |
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Preference number: 3 (lower is better) Translates to: VGLFGGLLLLGL*IRMAEGAETKD Trigger: GTCTTTGGTCTCTGCTCCTTCAGCCATTCTGATTCATAACCCCAGCAGAAGTAAACCACCAAACAACCCAAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000147842.2 |
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| 3UTR GCA 72 bp | TCTCATCAATCAGATGAAGAGCTTCCTCTTGTGCAATaGCCTGGTTATTGGGCACTACCCATGACAACAGCT | + |
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Preference number: 3 (lower is better) Translates to: SHQSDEELPLVQ*PGYWALPMTTA Trigger: AGCTGTTGTCATGGGTAGTGCCCAATAACCAGGGCATTGCACAAGAGGAAGCTCTTCATCTGATTGATGAGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000147842.2 |
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| 3UTR GCA 72 bp | TTTTGCTCTCTGTTGGGTTGTTTGGTGGTTTACTTCTaGTGGGGTTATGAATCAGAATGGCTGAAGGAGCAG | + |
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Preference number: 3 (lower is better) Translates to: FCSLLGCLVVYF*WGYESEWLKEQ Trigger: CTGCTCCTTCAGCCATTCTGATTCATAACCCCAGCAGAAGTAAACCACCAAACAACCCAACAGAGAGCAAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000147842.2 |
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| 3UTR-3UTR CAA 90 bp | CAAGTATGGCAACAGAGCTCAACATTCCACAACACAGCACTACATAGATGGAGTCTGCTGCTTGGCTTCTaGCATAGCGTAATGCTTAAA | + |
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Preference number: 3 (lower is better) Translates to: QVWQQSSTFHNTALHRWSLLLGF*HSVMLK Trigger: TTTAAGCATTACGCTATGCAAGAAGCCAAGCAGCAG...ACTCCATCTATGTAGTGCTGTGTTGTGGAATGTTGAGCTCTGTTGCCATACTTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000147842.2 |
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| 3UTR-3UTR CAA 90 bp | CACAAGAGTGGGCTTCGTGCTCTCAGTGTTTCCCTGGAACAGGATCATCTCTTTTCTTCAGAGAGCTTTTaGTCACTATTCAAATCCATC | + |
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Preference number: 3 (lower is better) Translates to: HKSGLRALSVSLEQDHLFSSESF*SLFKSI Trigger: GATGGATTTGAATAGTGACAAAAAGCTCTCTGAAGA...AAAGAGATGATCCTGTTCCAGGGAAACACTGAGAGCACGAAGCCCACTCTTGTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000147842.2 |
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| 3UTR TCA 72 bp | TGGTTAGCTTTTTCAAATCGCTTCTTATCCTTTAGATaGAGCTGCCTGAACGACCCCTCTTCTGTGTCATCC | + |
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Preference number: 3 (lower is better) Translates to: WLAFSNRFLSFR*SCLNDPSSVSS Trigger: GGATGACACAGAAGAGGGGTCGTTCAGGCAGCTTCATCTAAAGGATAAGAAGCGATTTGAAAAAGCTAACCA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000147842.2 |
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| 3UTR TCA 72 bp | TCATATAGTCAACTTCTTCAGGGTGCTCAAACGCAATaGACTCTTCAAGACTCAGACCAGGACCTGAATCCT | + |
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Preference number: 3 (lower is better) Translates to: SYSQLLQGAQTQ*TLQDSDQDLNP Trigger: AGGATTCAGGTCCTGGTCTGAGTCTTGAAGAGTTCATTGCGTTTGAGCACCCTGAAGAAGTTGACTATATGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000147842.2 |
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| 3UTR TCA 72 bp | CGCCATTTTTGTCATGTTCTTCCAAAGCCTCTTGGATaGCGAACTCCGTCATATAGTCAACTTCTTCAGGGT | + |
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Preference number: 3 (lower is better) Translates to: RHFCHVLPKPLG*RTPSYSQLLQG Trigger: ACCCTGAAGAAGTTGACTATATGACGGAGTTCGTCATCCAAGAGGCTTTGGAAGAACATGACAAAAATGGCG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000147842.2 |
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| 3UTR TCA 72 bp | TTGTGTTTCTTCCACTTCACTATGGACTACCTACGCTaGCTTCTAGCTCAGCTTCTGCCACATGACATTTTT | + |
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Preference number: 3 (lower is better) Translates to: LCFFHFTMDYLR*LLAQLLPHDIF Trigger: AAAAATGTCATGTGGCAGAAGCTGAGCTAGAAGTCAGCGTAGGTAGTCCATAGTGAAGTGGAAGAAACACAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000147842.2 |
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| 3UTR TCA 72 bp | AAACGCAATGAACTCTTCAAGACTCAGACCAGGACCTaGATCCTGGTTAGCTTTTTCAAATCGCTTCTTATC | + |
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Preference number: 3 (lower is better) Translates to: KRNELFKTQTRT*ILVSFFKSLLI Trigger: GATAAGAAGCGATTTGAAAAAGCTAACCAGGATTCAGGTCCTGGTCTGAGTCTTGAAGAGTTCATTGCGTTT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000147842.2 |
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| 3UTR-3UTR CAA 90 bp | GGGGTGTATGATATGAATCCACGAAGAATCAATAAGACATTAAAAGAACAGTGTATTCTGGGTCTTCATTaGCAGTTGGATCCCGCCTGT | + |
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Preference number: 3 (lower is better) Translates to: GVYDMNPRRINKTLKEQCILGLH*QLDPAC Trigger: ACAGGCGGGATCCAACTGCAAATGAAGACCCAGAAT...ACACTGTTCTTTTAATGTCTTATTGATTCTTCGTGGATTCATATCATACACCCC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000147842.2 |
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| 3UTR-3UTR CAA 90 bp | GTCATAATCATTCACAAATCTGTCCTTTTCAACAAGTATCCATTCTGGGTCTTCAACCCATCGCCATTTTaGTCATGTTCTTCCAAAGCC | + |
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Preference number: 3 (lower is better) Translates to: VIIIHKSVLFNKYPFWVFNPSPF*SCSSKA Trigger: GGCTTTGGAAGAACATGACAAAAATGGCGATGGGTT...GAAGACCCAGAATGGATACTTGTTGAAAAGGACAGATTTGTGAATGATTATGAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000147842.2 |
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| 3UTR-3UTR CAA 90 bp | GGGGTGTATGATATGAATCCACGAAGAATCAATAAGACATTAAAAGAACAGTGTATGAAGAGCTTCCTCTaGTGCAATGCCCTGGTTATT | + |
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Preference number: 3 (lower is better) Translates to: GVYDMNPRRINKTLKEQCMKSFL*CNALVI Trigger: AATAACCAGGGCATTGCACAAGAGGAAGCTCTTCAT...ACACTGTTCTTTTAATGTCTTATTGATTCTTCGTGGATTCATATCATACACCCC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000147842.2 |
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| 3UTR-3UTR CAA 90 bp | GGGGTGTATGATATGAATCCACGAAGAATCAATAAGACATTAAAAGAACAGTGTCTGTTTTGCTCTCTGTaGGGTTGTTTGGTGGTTTAC | + |
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Preference number: 3 (lower is better) Translates to: GVYDMNPRRINKTLKEQCLFCSL*GCLVVY Trigger: GTAAACCACCAAACAACCCAACAGAGAGCAAAACAG...ACACTGTTCTTTTAATGTCTTATTGATTCTTCGTGGATTCATATCATACACCCC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000147842.2 |
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| 3UTR CCA 72 bp | ATAGATGGAGTACTTAGGAAAGACTGTGTGGTCATATaGCACAACATTAATAGTTTACTCCTTCAATATGTC | + |
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Preference number: 3 (lower is better) Translates to: IDGVLRKDCVVI*HNINSLLLQYV Trigger: GACATATTGAAGGAGTAAACTATTAATGTTGTGCCATATGACCACACAGTCTTTCCTAAGTACTCCATCTAT 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000114276.3 ENSMUST00000147842.2 |
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| 3UTR CAA 72 bp | TCATCAAAGTCAATCACCCGGTCGTACATCTGGATGTaGTACTCATCCCACGTCACAGCGCCGTCGCTGTTC | + |
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Preference number: 4 (lower is better) Translates to: SSKSITRSYIWM*YSSHVTAPSLF Trigger: GAACAGCGACGGCGCTGTGACGTGGGATGAGTACAACATCCAGATGTACGACCGGGTGATTGACTTTGATGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000147842.2 |
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| CDS-3UTR GCA 90 bp | GCGCACTCGGGGGTTAAAGCTCGTCATGATAGAAGTAGTCGTCATGGAGCTGTCTGCAATCGTCTTTGCTaGTCTTCGTGGCCAAGTTTA | + |
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Preference number: 4 (lower is better) Translates to: AHSGVKARHDRSSRHGAVCNRLC*SSWPSL Trigger: TAAACTTGGCCACGAAGAGCAGCAAAGACGATTGCA...GACAGCTCCATGACGACTACTTCTATCATGACGAGCTTTAACCCCCGAGTGCGC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000147842.2 |
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| 3UTR CAA 72 bp | ATGCGACAGCGAAGACAGCAGAACCTCCAGGTGAACTaGTGTTTCTTCCACTTCACTATGGACTACCTACGC | + |
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Preference number: 4 (lower is better) Translates to: MRQRRQQNLQVN*CFFHFTMDYLR Trigger: GCGTAGGTAGTCCATAGTGAAGTGGAAGAAACACAAGTTCACCTGGAGGTTCTGCTGTCTTCGCTGTCGCAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000147842.2 |
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| CDS-3UTR GCA 90 bp | CAAGTATGGCAACAGAGCTCAACATTCCACAACACAGCACTACATAGATGGAGTTACTCCACAAACTGCTaGTTGGCTTCTTGCATAGCG | + |
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Preference number: 4 (lower is better) Translates to: QVWQQSSTFHNTALHRWSYSTNC*LASCIA Trigger: CGCTATGCAAGAAGCCAAGCAGCAGTTTGTGGAGTA...ACTCCATCTATGTAGTGCTGTGTTGTGGAATGTTGAGCTCTGTTGCCATACTTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114276.3 |
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| CDS-3UTR GCA 90 bp | CAAGTATGGCAACAGAGCTCAACATTCCACAACACAGCACTACATAGATGGAGTCTTCCTCTTGTGCAATaGCCTGGTTATTGGGCACTA | + |
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Preference number: 4 (lower is better) Translates to: QVWQQSSTFHNTALHRWSLPLVQ*PGYWAL Trigger: TAGTGCCCAATAACCAGGGCATTGCACAAGAGGAAG...ACTCCATCTATGTAGTGCTGTGTTGTGGAATGTTGAGCTCTGTTGCCATACTTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114276.3 |
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| CDS-3UTR CCA 90 bp | CAAGTATGGCAACAGAGCTCAACATTCCACAACACAGCACTACATAGATGGAGTCCAGGACCTGAATCCTaGTTAGCTTTTTCAAATCGC | + |
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Preference number: 4 (lower is better) Translates to: QVWQQSSTFHNTALHRWSPGPES*LAFSNR Trigger: GCGATTTGAAAAAGCTAACCAGGATTCAGGTCCTGG...ACTCCATCTATGTAGTGCTGTGTTGTGGAATGTTGAGCTCTGTTGCCATACTTG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000114276.3 |
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| 3UTR CAA 72 bp | CCCATCGCCATTTTTGTCATGTTCTTCCAAAGCCTCTaGGATGACGAACTCCGTCATATAGTCAACTTCTTC | + |
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Preference number: 4 (lower is better) Translates to: PIAIFVMFFQSL*DDELRHIVNFF Trigger: GAAGAAGTTGACTATATGACGGAGTTCGTCATCCAAGAGGCTTTGGAAGAACATGACAAAAATGGCGATGGG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000147842.2 |
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| 3UTR CAA 72 bp | CTATCAACTACAATGCTAGTAATAGCTCAGTCTCCCTaGCCTTCCTCACCCCTGATTAGCTTGAATCGTGTT | + |
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Preference number: 4 (lower is better) Translates to: LSTTMLVIAQSP*PSSPLISLNRV Trigger: AACACGATTCAAGCTAATCAGGGGTGAGGAAGGCAAGGGAGACTGAGCTATTACTAGCATTGTAGTTGATAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000147842.2 |
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| CDS-3UTR CCA 90 bp | CAAGTATGGCAACAGAGCTCAACATTCCACAACACAGCACTACATAGATGGAGTCTTTGCTGCTCTTCGTaGCCAAGTTTAACATACTCA | + |
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Preference number: 4 (lower is better) Translates to: QVWQQSSTFHNTALHRWSLCCSS*PSLTYS Trigger: TGAGTATGTTAAACTTGGCCACGAAGAGCAGCAAAG...ACTCCATCTATGTAGTGCTGTGTTGTGGAATGTTGAGCTCTGTTGCCATACTTG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000114276.3 ENSMUST00000147842.2 |
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| CDS-3UTR CCA 90 bp | AGTTTCAAAAGTAAGTCTACTAGTACAAGAACGAAAACTGACAGCTTCATCACGCATGACAACAGCTCTTaGGGATCAAGCCGGCCATCA | + |
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Preference number: 4 (lower is better) Translates to: SFKSKSTSTRTKTDSFITHDNSS*GSSRPS Trigger: TGATGGCCGGCTTGATCCCCAAGAGCTGTTGTCATG...CGTGATGAAGCTGTCAGTTTTCGTTCTTGTACTAGTAGACTTACTTTTGAAACT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000114276.3 |
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| CDS-3UTR GCA 90 bp | GTACTTAGGAAAGACTGTGTGGTCATATGGCACAACATTAATAGTTTACTCCTTGACTGCAATCGTCTTTaGTGCTCTTCGTGGCCAAGT | + |
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Preference number: 4 (lower is better) Translates to: VLRKDCVVIWHNINSLLLDCNRL*CSSWPS Trigger: ACTTGGCCACGAAGAGCAGCAAAGACGATTGCAGTC...AAGGAGTAAACTATTAATGTTGTGCCATATGACCACACAGTCTTTCCTAAGTAC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000114276.3 ENSMUST00000147842.2 |
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| CDS-3UTR GCA 90 bp | ACACAGCACTACATAGATGGAGTACTTAGGAAAGACTGTGTGGTCATATGGCACTTCTTTATGATCGACTaGAATCGTCTTTGCTGCTCT | + |
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Preference number: 4 (lower is better) Translates to: TQHYIDGVLRKDCVVIWHFFMID*NRLCCS Trigger: AGAGCAGCAAAGACGATTGCAGTCGATCATAAAGAA...GTGCCATATGACCACACAGTCTTTCCTAAGTACTCCATCTATGTAGTGCTGTGT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114276.3 |
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| CDS-3UTR TCA 90 bp | TCTACTAGTACAAGAACGAAAACTGACAGCTTCATCACGTGCTACTTAAATACTGGTGCTCAAACGCAATaGACTCTTCAAGACTCAGAC | + |
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Preference number: 4 (lower is better) Translates to: STSTRTKTDSFITCYLNTGAQTQ*TLQDSD Trigger: GTCTGAGTCTTGAAGAGTTCATTGCGTTTGAGCACC...AGTATTTAAGTAGCACGTGATGAAGCTGTCAGTTTTCGTTCTTGTACTAGTAGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114276.3 |
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| CDS-3UTR GCA 90 bp | TCTACATTTAGATCATCTGAAGTGGTAAGACTTAAGAGTGTAAAGGACAACATCGACTGCAATCGTCTTTaGTGCTCTTCGTGGCCAAGT | + |
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Preference number: 4 (lower is better) Translates to: STFRSSEVVRLKSVKDNIDCNRL*CSSWPS Trigger: ACTTGGCCACGAAGAGCAGCAAAGACGATTGCAGTC...GATGTTGTCCTTTACACTCTTAAGTCTTACCACTTCAGATGATCTAAATGTAGA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000114276.3 ENSMUST00000147842.2 |
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| CDS-3UTR GCA 90 bp | TCTACTAGTACAAGAACGAAAACTGACAGCTTCATCACGTGCTACTTAAATACTAAGAGCTTCCTCTTGTaGAATGCCCTGGTTATTGGG | + |
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Preference number: 4 (lower is better) Translates to: STSTRTKTDSFITCYLNTKSFLL*NALVIG Trigger: CCCAATAACCAGGGCATTGCACAAGAGGAAGCTCTT...AGTATTTAAGTAGCACGTGATGAAGCTGTCAGTTTTCGTTCTTGTACTAGTAGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114276.3 |
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| CDS-3UTR CCA 90 bp | GTACTTAGGAAAGACTGTGTGGTCATATGGCACAACATTAATAGTTTACTCCTTCAATGCCCTGGTTATTaGGCACTACCCATGACAACA | + |
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Preference number: 4 (lower is better) Translates to: VLRKDCVVIWHNINSLLLQCPGY*ALPMTT Trigger: TGTTGTCATGGGTAGTGCCCAATAACCAGGGCATTG...AAGGAGTAAACTATTAATGTTGTGCCATATGACCACACAGTCTTTCCTAAGTAC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114276.3 |
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| CDS-3UTR CCA 90 bp | CAAGTATGGCAACAGAGCTCAACATTCCACAACACAGCACTACATAGATGGAGTGTAAGGAACAAGTCTTaGTTTTCCAGAATCTCTTCT | + |
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Preference number: 4 (lower is better) Translates to: QVWQQSSTFHNTALHRWSVRNKS*FSRISS Trigger: AGAAGAGATTCTGGAAAACCAAGACTTGTTCCTTAC...ACTCCATCTATGTAGTGCTGTGTTGTGGAATGTTGAGCTCTGTTGCCATACTTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114276.3 |
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| CDS-3UTR TCA 90 bp | TCTACATTTAGATCATCTGAAGTGGTAAGACTTAAGAGTGTAAAGGACAACATCACTCAGACCAGGACCTaGATCCTGGTTAGCTTTTTC | + |
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Preference number: 4 (lower is better) Translates to: STFRSSEVVRLKSVKDNITQTRT*ILVSFF Trigger: GAAAAAGCTAACCAGGATTCAGGTCCTGGTCTGAGT...GATGTTGTCCTTTACACTCTTAAGTCTTACCACTTCAGATGATCTAAATGTAGA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000114276.3 |
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| 3UTR CAA 72 bp | AGAAATTCTTCCAAACTAACAAACCCATCGCCATTTTaGTCATGTTCTTCCAAAGCCTCTTGGATGACGAAC | + |
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Preference number: 4 (lower is better) Translates to: RNSSKLTNPSPF*SCSSKASWMTN Trigger: GTTCGTCATCCAAGAGGCTTTGGAAGAACATGACAAAAATGGCGATGGGTTTGTTAGTTTGGAAGAATTTCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000147842.2 |
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| CDS-3UTR GCA 90 bp | TCTACATTTAGATCATCTGAAGTGGTAAGACTTAAGAGTGTAAAGGACAACATCTGCAATCGTCTTTGCTaGTCTTCGTGGCCAAGTTTA | + |
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Preference number: 4 (lower is better) Translates to: STFRSSEVVRLKSVKDNICNRLC*SSWPSL Trigger: TAAACTTGGCCACGAAGAGCAGCAAAGACGATTGCA...GATGTTGTCCTTTACACTCTTAAGTCTTACCACTTCAGATGATCTAAATGTAGA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000114276.3 ENSMUST00000147842.2 |
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| CDS-3UTR GCA 90 bp | GTACTTAGGAAAGACTGTGTGGTCATATGGCACAACATTAATAGTTTACTCCTTTCAACTTCTTCAGGGTaGTCAAACGCAATGAACTCT | + |
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Preference number: 4 (lower is better) Translates to: VLRKDCVVIWHNINSLLLSTSSG*SNAMNS Trigger: AGAGTTCATTGCGTTTGAGCACCCTGAAGAAGTTGA...AAGGAGTAAACTATTAATGTTGTGCCATATGACCACACAGTCTTTCCTAAGTAC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114276.3 |
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| 3UTR CAA 72 bp | TTGCCTTCCTCACCCCTGATTAGCTTGAATCGTGTTTaGTATTACTGGTATGTTCACAAAATACAGCATTTG | + |
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Preference number: 4 (lower is better) Translates to: LPSSPLISLNRV*YYWYVHKIQHL Trigger: CAAATGCTGTATTTTGTGAACATACCAGTAATACAAAACACGATTCAAGCTAATCAGGGGTGAGGAAGGCAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000147842.2 |
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| CDS-3UTR CCA 90 bp | TCTACATTTAGATCATCTGAAGTGGTAAGACTTAAGAGTGTAAAGGACAACATCAACAAGTATCCATTCTaGGTCTTCATTTGCAGTTGG | + |
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Preference number: 4 (lower is better) Translates to: STFRSSEVVRLKSVKDNINKYPF*VFICSW Trigger: CCAACTGCAAATGAAGACCCAGAATGGATACTTGTT...GATGTTGTCCTTTACACTCTTAAGTCTTACCACTTCAGATGATCTAAATGTAGA 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114276.3 |
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| 3UTR CAA 72 bp | AACAGTGTGTTAGACGGATATATCAGTTATCACACTTaGTTAGTTCATGGATTCAGTAGCTGTCTATTATGT | + |
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Preference number: 4 (lower is better) Translates to: NSVLDGYISYHT*LVHGFSSCLLC Trigger: ACATAATAGACAGCTACTGAATCCATGAACTAACAAAGTGTGATAACTGATATATCCGTCTAACACACTGTT 35% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000147842.2 |
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| CDS-3UTR CAA 90 bp | GCGCACTCGGGGGTTAAAGCTCGTCATGATAGAAGTAGTCGTCATGGAGCTGTCCGACTGCAATCGTCTTaGCTGCTCTTCGTGGCCAAG | + |
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Preference number: 5 (lower is better) Translates to: AHSGVKARHDRSSRHGAVRLQSS*LLFVAK Trigger: CTTGGCCACGAAGAGCAGCAAAGACGATTGCAGTCG...GACAGCTCCATGACGACTACTTCTATCATGACGAGCTTTAACCCCCGAGTGCGC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000147842.2 |
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| CDS CCA 90 bp | TCAATTTTCTTTATGATCGACTGCAATCGTCTTTGCTGCTCTTCGTaGCCAAGTTTAACATACTCATCGACGTCTTCCTGGACACCCAGC | + |
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Preference number: 5 (lower is better) Translates to: SIFFMIDCNRLCCSS*PSLTYSSTSSWTPS Trigger: GCTGGGTGTCCAGGAAGACGTCGATGAGTATGTTAAACTTGGCCACGAAGAGCAGCAAAGACGATTGCAGTCGATCATAAAGAAAATTGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114276.3 |
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| CDS-3UTR CAA 90 bp | CAAGTATGGCAACAGAGCTCAACATTCCACAACACAGCACTACATAGATGGAGTAACCCATCGCCATTTTaGTCATGTTCTTCCAAAGCC | + |
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Preference number: 5 (lower is better) Translates to: QVWQQSSTFHNTALHRWSNPSPF*SCSSKA Trigger: GGCTTTGGAAGAACATGACAAAAATGGCGATGGGTT...ACTCCATCTATGTAGTGCTGTGTTGTGGAATGTTGAGCTCTGTTGCCATACTTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114276.3 |
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| CDS-3UTR CAA 90 bp | TCTACATTTAGATCATCTGAAGTGGTAAGACTTAAGAGTGTAAAGGACAACATCCGACTGCAATCGTCTTaGCTGCTCTTCGTGGCCAAG | + |
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Preference number: 5 (lower is better) Translates to: STFRSSEVVRLKSVKDNIRLQSS*LLFVAK Trigger: CTTGGCCACGAAGAGCAGCAAAGACGATTGCAGTCG...GATGTTGTCCTTTACACTCTTAAGTCTTACCACTTCAGATGATCTAAATGTAGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000114276.3 ENSMUST00000147842.2 |
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| CDS-3UTR CAA 90 bp | TCTACTAGTACAAGAACGAAAACTGACAGCTTCATCACGTGCTACTTAAATACTGCAATGCCCTGGTTATaGGGCACTACCCATGACAAC | + |
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Preference number: 5 (lower is better) Translates to: STSTRTKTDSFITCYLNTAMPWL*GTTHDN Trigger: GTTGTCATGGGTAGTGCCCAATAACCAGGGCATTGC...AGTATTTAAGTAGCACGTGATGAAGCTGTCAGTTTTCGTTCTTGTACTAGTAGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114276.3 |
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| CDS GCA 90 bp | GTAAGAAAGCCATCAGAGTCCGAGTCAATTTTCTTTATGATCGACTaGAATCGTCTTTGCTGCTCTTCGTGGCCAAGTTTAACATACTCA | + |
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Preference number: 5 (lower is better) Translates to: VRKPSESESIFFMID*NRLCCSSWPSLTYS Trigger: TGAGTATGTTAAACTTGGCCACGAAGAGCAGCAAAGACGATTGCAGTCGATCATAAAGAAAATTGACTCGGACTCTGATGGCTTTCTTAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114276.3 |
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| CDS-3UTR CAA 90 bp | TCTACTAGTACAAGAACGAAAACTGACAGCTTCATCACGTGCTACTTAAATACTATTCTGGGTCTTCATTaGCAGTTGGATCCCGCCTGT | + |
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Preference number: 5 (lower is better) Translates to: STSTRTKTDSFITCYLNTILGLH*QLDPAC Trigger: ACAGGCGGGATCCAACTGCAAATGAAGACCCAGAAT...AGTATTTAAGTAGCACGTGATGAAGCTGTCAGTTTTCGTTCTTGTACTAGTAGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114276.3 |
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| CDS-3UTR CAA 90 bp | AGTTTCAAAAGTAAGTCTACTAGTACAAGAACGAAAACTGACAGCTTCATCACGATGAAGAGCTTCCTCTaGTGCAATGCCCTGGTTATT | + |
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Preference number: 5 (lower is better) Translates to: SFKSKSTSTRTKTDSFITMKSFL*CNALVI Trigger: AATAACCAGGGCATTGCACAAGAGGAAGCTCTTCAT...CGTGATGAAGCTGTCAGTTTTCGTTCTTGTACTAGTAGACTTACTTTTGAAACT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000114276.3 |
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| CDS-3UTR CAA 90 bp | TCTACTAGTACAAGAACGAAAACTGACAGCTTCATCACGTGCTACTTAAATACTTCTTCAGAGAGCTTTTaGTCACTATTCAAATCCATC | + |
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Preference number: 5 (lower is better) Translates to: STSTRTKTDSFITCYLNTSSESF*SLFKSI Trigger: GATGGATTTGAATAGTGACAAAAAGCTCTCTGAAGA...AGTATTTAAGTAGCACGTGATGAAGCTGTCAGTTTTCGTTCTTGTACTAGTAGA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000114276.3 |
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| CDS CCA 72 bp | TTTATGATCGACTGCAATCGTCTTTGCTGCTCTTCGTaGCCAAGTTTAACATACTCATCGACGTCTTCCTGG | + |
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Preference number: 6 (lower is better) Translates to: FMIDCNRLCCSS*PSLTYSSTSSW Trigger: CCAGGAAGACGTCGATGAGTATGTTAAACTTGGCCACGAAGAGCAGCAAAGACGATTGCAGTCGATCATAAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114276.3 |
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| CDS GCA 72 bp | CCATCAGAGTCCGAGTCAATTTTCTTTATGATCGACTaGAATCGTCTTTGCTGCTCTTCGTGGCCAAGTTTA | + |
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Preference number: 6 (lower is better) Translates to: PSESESIFFMID*NRLCCSSWPSL Trigger: TAAACTTGGCCACGAAGAGCAGCAAAGACGATTGCAGTCGATCATAAAGAAAATTGACTCGGACTCTGATGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114276.3 |
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