RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for RCN1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000005973

Ensembl transcript IDs: ENSMUST00000006128.7

Found 39 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp CAAATACACAGCGGTTACTCTGTACAGTGTCCCACCCACCCACCTTaGGTTACAGAGCCCTTTCATGGTCTCTTCCCCATTAATGAGTTA +
Preference number: 1 (lower is better)
Translates to: QIHSGYSVQCPTHPP*VTEPFHGLFPINEL
Trigger: TAACTCATTAATGGGGAAGAGACCATGAAAGGGCTCTGTAACTCAAGGTGGGTGGGTGGGACACTGTACAGAGTAACCGCTGTGTATTTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006128.7
3UTR GCA 90 bp TTTAACCCCAATCTGAGGTATAATCCCACTGTTAAGGGACACAACTaGTATACCCTTGACAACTATAGCAATCACCCACTACACCTGCAG +
Preference number: 1 (lower is better)
Translates to: FNPNLRYNPTVKGHN*YTLDNYSNHPLHLQ
Trigger: CTGCAGGTGTAGTGGGTGATTGCTATAGTTGTCAAGGGTATAGCAGTTGTGTCCCTTAACAGTGGGATTATACCTCAGATTGGGGTTAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006128.7
3UTR GCA 90 bp GAAAAATCATGCTGTAGCAATGTATCCCCTCAGAGGACTGCAATTTaGCAGGAGTTTAATGTGCTTCACGGGAAATCCTACTGGAATAAA +
Preference number: 1 (lower is better)
Translates to: EKSCCSNVSPQRTAI*QEFNVLHGKSYWNK
Trigger: TTTATTCCAGTAGGATTTCCCGTGAAGCACATTAAACTCCTGGCAAATTGCAGTCCTCTGAGGGGATACATTGCTACAGCATGATTTTTC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000006128.7
3UTR GCA 90 bp GCAATGTATCCCCTCAGAGGACTGCAATTTGCCAGGAGTTTAATGTaGTTCACGGGAAATCCTACTGGAATAAATAATGATGGTTATTTC +
Preference number: 1 (lower is better)
Translates to: AMYPLRGLQFARSLM*FTGNPTGINNDGYF
Trigger: GAAATAACCATCATTATTTATTCCAGTAGGATTTCCCGTGAAGCACATTAAACTCCTGGCAAATTGCAGTCCTCTGAGGGGATACATTGC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006128.7
3UTR GCA 90 bp TACCATTTACAAGACAGCTCCAAGTATAGAAGATTTGAAATACCATaGCTGCTCCAAGGACAATACAAATTGATTCCTTCAGCCTTTACC +
Preference number: 1 (lower is better)
Translates to: YHLQDSSKYRRFEIP*LLQGQYKLIPSAFT
Trigger: GGTAAAGGCTGAAGGAATCAATTTGTATTGTCCTTGGAGCAGGCATGGTATTTCAAATCTTCTATACTTGGAGCTGTCTTGTAAATGGTA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000006128.7
3UTR CAA 90 bp TGGATTCGAGGAAGCCGCACAGTCAGTCCAGGCTGGGTAAAGACTTaGCTGCATGGCGGCGTTGGTATCCACCATGTTCTTGTCCATCAC +
Preference number: 2 (lower is better)
Translates to: WIRGSRTVSPGWVKT*LHGGVGIHHVLVHH
Trigger: GTGATGGACAAGAACATGGTGGATACCAACGCCGCCATGCAGCAAAGTCTTTACCCAGCCTGGACTGACTGTGCGGCTTCCTCGAATCCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000006128.7
3UTR-3UTR GCA 90 bp ATATACCATTTACAAGACAGCTCCAAGTATAGAAGATTTGAAATACCATGCCTGCACCTGCAGACAGCCTaGGACAGTTGGCCACACCAG +
Preference number: 2 (lower is better)
Translates to: IYHLQDSSKYRRFEIPCLHLQTA*DSWPHQ
Trigger: CTGGTGTGGCCAACTGTCGCAGGCTGTCTGCAGGTG...CAGGCATGGTATTTCAAATCTTCTATACTTGGAGCTGTCTTGTAAATGGTATAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000006128.7
3UTR CAA 90 bp ATTACTGAGTCCATTCCGATCTGGACCACGGACTCTTTTGATTGTTaGATTCCAGAGGAAGAAACCACACTTGCTATGGAGTCAAACACC +
Preference number: 2 (lower is better)
Translates to: ITESIPIWTTDSFDC*IPEEETTLAMESNT
Trigger: GGTGTTTGACTCCATAGCAAGTGTGGTTTCTTCCTCTGGAATCAAACAATCAAAAGAGTCCGTGGTCCAGATCGGAATGGACTCAGTAAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006128.7
3UTR CAA 90 bp GAAGTCCAGAGGGATGAAATCAGCAACTACACATGTATTCTGAACTaGTCAGTAATTACTGAGTCCATTCCGATCTGGACCACGGACTCT +
Preference number: 2 (lower is better)
Translates to: EVQRDEISNYTCILN*SVITESIPIWTTDS
Trigger: AGAGTCCGTGGTCCAGATCGGAATGGACTCAGTAATTACTGACAAGTTCAGAATACATGTGTAGTTGCTGATTTCATCCCTCTGGACTTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000006128.7
3UTR-3UTR GCA 90 bp CAGGAAGCTCTCTACTTCCTCAGCGTGGACTCAGTGTCACTGTACTTTGGTTTCTTGAAATACCATGCCTaGTCCAAGGACAATACAAAT +
Preference number: 2 (lower is better)
Translates to: QEALYFLSVDSVSLYFGFLKYHA*SKDNTN
Trigger: ATTTGTATTGTCCTTGGAGCAGGCATGGTATTTCAA...GAAACCAAAGTACAGTGACACTGAGTCCACGCTGAGGAAGTAGAGAGCTTCCTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000006128.7
3UTR-3UTR TCA 90 bp GAAGTCCAGAGGGATGAAATCAGCAACTACACATGTATTCTGAACTTGTCAGTAGACCACGGACTCTTTTaGTTGTTTGATTCCAGAGGA +
Preference number: 2 (lower is better)
Translates to: EVQRDEISNYTCILNLSVDHGLF*LFDSRG
Trigger: TCCTCTGGAATCAAACAATCAAAAGAGTCCGTGGTC...TACTGACAAGTTCAGAATACATGTGTAGTTGCTGATTTCATCCCTCTGGACTTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006128.7
3UTR-3UTR GCA 90 bp ATATACCATTTACAAGACAGCTCCAAGTATAGAAGATTTGAAATACCATGCCTGATCACCCACTACACCTaGAGACAGCCTGCGACAGTT +
Preference number: 2 (lower is better)
Translates to: IYHLQDSSKYRRFEIPCLITHYT*RQPATV
Trigger: AACTGTCGCAGGCTGTCTGCAGGTGTAGTGGGTGAT...CAGGCATGGTATTTCAAATCTTCTATACTTGGAGCTGTCTTGTAAATGGTATAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000006128.7
3UTR-3UTR CCA 90 bp GAAGTCCAGAGGGATGAAATCAGCAACTACACATGTATTCTGAACTTGTCAGTACTCCCATCTACAGGGTaGAATTTCACCTGTAAGTGT +
Preference number: 2 (lower is better)
Translates to: EVQRDEISNYTCILNLSVLPSTG*NFTCKC
Trigger: ACACTTACAGGTGAAATTCCACCCTGTAGATGGGAG...TACTGACAAGTTCAGAATACATGTGTAGTTGCTGATTTCATCCCTCTGGACTTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000006128.7
3UTR-3UTR GCA 90 bp AAATTTAATAGTTCAAATACACAGCGGTTACTCTGTACAGTGTCCCACCCACCCAGTCTAGAAAAATCATaGTGTAGCAATGTATCCCCT +
Preference number: 2 (lower is better)
Translates to: KFNSSNTQRLLCTVSHPPSLEKS*CSNVSP
Trigger: AGGGGATACATTGCTACAGCATGATTTTTCTAGACT...GGGTGGGTGGGACACTGTACAGAGTAACCGCTGTGTATTTGAACTATTAAATTT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000006128.7
3UTR-3UTR GCA 90 bp ATATACCATTTACAAGACAGCTCCAAGTATAGAAGATTTGAAATACCATGCCTGCAGAGGACTGCAATTTaGCAGGAGTTTAATGTGCTT +
Preference number: 2 (lower is better)
Translates to: IYHLQDSSKYRRFEIPCLQRTAI*QEFNVL
Trigger: AAGCACATTAAACTCCTGGCAAATTGCAGTCCTCTG...CAGGCATGGTATTTCAAATCTTCTATACTTGGAGCTGTCTTGTAAATGGTATAT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000006128.7
3UTR-3UTR TCA 90 bp ATATACCATTTACAAGACAGCTCCAAGTATAGAAGATTTGAAATACCATGCCTGAAGGACAATACAAATTaGTTCCTTCAGCCTTTACCT +
Preference number: 2 (lower is better)
Translates to: IYHLQDSSKYRRFEIPCLKDNTN*FLQPLP
Trigger: AGGTAAAGGCTGAAGGAATCAATTTGTATTGTCCTT...CAGGCATGGTATTTCAAATCTTCTATACTTGGAGCTGTCTTGTAAATGGTATAT
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000006128.7
3UTR CCA 72 bp ATACAAAACCAGGCAGTACAGTGTGGCCTTGGGGCTTaGTCTCTGGATTCGAGGAAGCCGCACAGTCAGTCC +
Preference number: 3 (lower is better)
Translates to: IQNQAVQCGLGA*SLDSRKPHSQS
Trigger: GGACTGACTGTGCGGCTTCCTCGAATCCAGAGACCAAGCCCCAAGGCCACACTGTACTGCCTGGTTTTGTAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000006128.7
3UTR CCA 72 bp TCCAGGCTGGGTAAAGACTTTGCTGCATGGCGGCGTTaGTATCCACCATGTTCTTGTCCATCACCCATGCTC +
Preference number: 3 (lower is better)
Translates to: SRLGKDFAAWRR*YPPCSCPSPML
Trigger: GAGCATGGGTGATGGACAAGAACATGGTGGATACCAACGCCGCCATGCAGCAAAGTCTTTACCCAGCCTGGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000006128.7
3UTR GCA 72 bp ATACCCTTGACAACTATAGCAATCACCCACTACACCTaGAGACAGCCTGCGACAGTTGGCCACACCAGAACC +
Preference number: 3 (lower is better)
Translates to: IPLTTIAITHYT*RQPATVGHTRT
Trigger: GGTTCTGGTGTGGCCAACTGTCGCAGGCTGTCTGCAGGTGTAGTGGGTGATTGCTATAGTTGTCAAGGGTAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000006128.7
3UTR-3UTR CAA 90 bp CAGGAAGCTCTCTACTTCCTCAGCGTGGACTCAGTGTCACTGTACTTTGGTTTCTCCCACCCACCCACCTaGAGTTACAGAGCCCTTTCA +
Preference number: 3 (lower is better)
Translates to: QEALYFLSVDSVSLYFGFSHPPT*SYRALS
Trigger: TGAAAGGGCTCTGTAACTCAAGGTGGGTGGGTGGGA...GAAACCAAAGTACAGTGACACTGAGTCCACGCTGAGGAAGTAGAGAGCTTCCTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000006128.7
3UTR-3UTR CAA 90 bp CAGGAAGCTCTCTACTTCCTCAGCGTGGACTCAGTGTCACTGTACTTTGGTTTCAGGAAGAAACCACACTaGCTATGGAGTCAAACACCA +
Preference number: 3 (lower is better)
Translates to: QEALYFLSVDSVSLYFGFRKKPH*LWSQTP
Trigger: TGGTGTTTGACTCCATAGCAAGTGTGGTTTCTTCCT...GAAACCAAAGTACAGTGACACTGAGTCCACGCTGAGGAAGTAGAGAGCTTCCTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000006128.7
3UTR TCA 72 bp CCTGTAAGTGTTACTCCAGCTAGTTTGGTCAATGGCTaGGATGTTCACCTTGCCCTGTTTCCTTGGCATAAG +
Preference number: 3 (lower is better)
Translates to: PVSVTPASLVNG*DVHLALFPWHK
Trigger: CTTATGCCAAGGAAACAGGGCAAGGTGAACATCTCAGCCATTGACCAAACTAGCTGGAGTAACACTTACAGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000006128.7
3UTR GCA 72 bp TGCTGTAGCAATGTATCCCCTCAGAGGACTGCAATTTaGCAGGAGTTTAATGTGCTTCACGGGAAATCCTAC +
Preference number: 3 (lower is better)
Translates to: CCSNVSPQRTAI*QEFNVLHGKSY
Trigger: GTAGGATTTCCCGTGAAGCACATTAAACTCCTGGCAAATTGCAGTCCTCTGAGGGGATACATTGCTACAGCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006128.7
3UTR-3UTR CAA 90 bp CAGGAAGCTCTCTACTTCCTCAGCGTGGACTCAGTGTCACTGTACTTTGGTTTCCAAGGACAATACAAATaGATTCCTTCAGCCTTTACC +
Preference number: 3 (lower is better)
Translates to: QEALYFLSVDSVSLYFGFQGQYK*IPSAFT
Trigger: GGTAAAGGCTGAAGGAATCAATTTGTATTGTCCTTG...GAAACCAAAGTACAGTGACACTGAGTCCACGCTGAGGAAGTAGAGAGCTTCCTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000006128.7
3UTR CCA 72 bp CTACTTCCTCAGCGTGGACTCAGTGTCACTGTACTTTaGTTTCTCATTAGGACATTGTTTCTATCTCACCCA +
Preference number: 3 (lower is better)
Translates to: LLPQRGLSVTVL*FLIRTLFLSHP
Trigger: TGGGTGAGATAGAAACAATGTCCTAATGAGAAACCAAAGTACAGTGACACTGAGTCCACGCTGAGGAAGTAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000006128.7
3UTR GCA 72 bp CCCCTCAGAGGACTGCAATTTGCCAGGAGTTTAATGTaGTTCACGGGAAATCCTACTGGAATAAATAATGAT +
Preference number: 3 (lower is better)
Translates to: PLRGLQFARSLM*FTGNPTGINND
Trigger: ATCATTATTTATTCCAGTAGGATTTCCCGTGAAGCACATTAAACTCCTGGCAAATTGCAGTCCTCTGAGGGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006128.7
3UTR CCA 72 bp CTGAACTTGTCAGTAATTACTGAGTCCATTCCGATCTaGACCACGGACTCTTTTGATTGTTTGATTCCAGAG +
Preference number: 3 (lower is better)
Translates to: LNLSVITESIPI*TTDSFDCLIPE
Trigger: CTCTGGAATCAAACAATCAAAAGAGTCCGTGGTCCAGATCGGAATGGACTCAGTAATTACTGACAAGTTCAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006128.7
3UTR GCA 72 bp AATCTGAGGTATAATCCCACTGTTAAGGGACACAACTaGTATACCCTTGACAACTATAGCAATCACCCACTA +
Preference number: 3 (lower is better)
Translates to: NLRYNPTVKGHN*YTLDNYSNHPL
Trigger: TAGTGGGTGATTGCTATAGTTGTCAAGGGTATAGCAGTTGTGTCCCTTAACAGTGGGATTATACCTCAGATT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000006128.7
3UTR GCA 72 bp CAAGACAGCTCCAAGTATAGAAGATTTGAAATACCATaGCTGCTCCAAGGACAATACAAATTGATTCCTTCA +
Preference number: 3 (lower is better)
Translates to: QDSSKYRRFEIP*LLQGQYKLIPS
Trigger: TGAAGGAATCAATTTGTATTGTCCTTGGAGCAGGCATGGTATTTCAAATCTTCTATACTTGGAGCTGTCTTG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000006128.7
CDS-3UTR CCA 90 bp CTTGACAACTATAGCAATCACCCACTACACCTGCAGACAGCCTGCGACAGTTGGTGCGCACCGTGGGCTTaGCCCGCAGCGCCAGCACCA +
Preference number: 4 (lower is better)
Translates to: LDNYSNHPLHLQTACDSWCAPWA*PAAPAP
Trigger: TGGTGCTGGCGCTGCGGGCCAAGCCCACGGTGCGCA...CCAACTGTCGCAGGCTGTCTGCAGGTGTAGTGGGTGATTGCTATAGTTGTCAAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000006128.7
3UTR CAA 72 bp GGAAGCCGCACAGTCAGTCCAGGCTGGGTAAAGACTTaGCTGCATGGCGGCGTTGGTATCCACCATGTTCTT +
Preference number: 4 (lower is better)
Translates to: GSRTVSPGWVKT*LHGGVGIHHVL
Trigger: AAGAACATGGTGGATACCAACGCCGCCATGCAGCAAAGTCTTTACCCAGCCTGGACTGACTGTGCGGCTTCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000006128.7
3UTR CAA 72 bp CTCCAGCTAGTTTGGTCAATGGCTGAGATGTTCACCTaGCCCTGTTTCCTTGGCATAAGCTGTGCTAGAAGC +
Preference number: 4 (lower is better)
Translates to: LQLVWSMAEMFT*PCFLGISCARS
Trigger: GCTTCTAGCACAGCTTATGCCAAGGAAACAGGGCAAGGTGAACATCTCAGCCATTGACCAAACTAGCTGGAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000006128.7
3UTR CAA 72 bp TCCATTCCGATCTGGACCACGGACTCTTTTGATTGTTaGATTCCAGAGGAAGAAACCACACTTGCTATGGAG +
Preference number: 4 (lower is better)
Translates to: SIPIWTTDSFDC*IPEEETTLAME
Trigger: CTCCATAGCAAGTGTGGTTTCTTCCTCTGGAATCAAACAATCAAAAGAGTCCGTGGTCCAGATCGGAATGGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006128.7
CDS-3UTR CCA 90 bp GAAGTCCAGAGGGATGAAATCAGCAACTACACATGTATTCTGAACTTGTCAGTACCAGAATCTCCTCCTTaGTCAGCATCTCGTCCTTGT +
Preference number: 4 (lower is better)
Translates to: EVQRDEISNYTCILNLSVPESPP*SASRPC
Trigger: ACAAGGACGAGATGCTGACCAAGGAGGAGATTCTGG...TACTGACAAGTTCAGAATACATGTGTAGTTGCTGATTTCATCCCTCTGGACTTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000006128.7
3UTR CAA 72 bp ATAATCCCACTGTTAAGGGACACAACTGCTATACCCTaGACAACTATAGCAATCACCCACTACACCTGCAGA +
Preference number: 4 (lower is better)
Translates to: IIPLLRDTTAIP*TTIAITHYTCR
Trigger: TCTGCAGGTGTAGTGGGTGATTGCTATAGTTGTCAAGGGTATAGCAGTTGTGTCCCTTAACAGTGGGATTAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000006128.7
3UTR CAA 72 bp AGGGATGAAATCAGCAACTACACATGTATTCTGAACTaGTCAGTAATTACTGAGTCCATTCCGATCTGGACC +
Preference number: 4 (lower is better)
Translates to: RDEISNYTCILN*SVITESIPIWT
Trigger: GGTCCAGATCGGAATGGACTCAGTAATTACTGACAAGTTCAGAATACATGTGTAGTTGCTGATTTCATCCCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000006128.7
3UTR CAA 72 bp TATACCATTTACAAGACAGCTCCAAGTATAGAAGATTaGAAATACCATGCCTGCTCCAAGGACAATACAAAT +
Preference number: 4 (lower is better)
Translates to: YTIYKTAPSIED*KYHACSKDNTN
Trigger: ATTTGTATTGTCCTTGGAGCAGGCATGGTATTTCAAATCTTCTATACTTGGAGCTGTCTTGTAAATGGTATA
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000006128.7
CDS-3UTR CAA 90 bp CAGGAAGCTCTCTACTTCCTCAGCGTGGACTCAGTGTCACTGTACTTTGGTTTCTCCAGCTTCCCATCCTaGTTCAGATCTCGGAAGTCG +
Preference number: 5 (lower is better)
Translates to: QEALYFLSVDSVSLYFGFSSFPS*FRSRKS
Trigger: CGACTTCCGAGATCTGAACAAGGATGGGAAGCTGGA...GAAACCAAAGTACAGTGACACTGAGTCCACGCTGAGGAAGTAGAGAGCTTCCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000006128.7
CDS-3UTR CAA 90 bp GAAGGGCGTGAAGTCCAGAGGGATGAAATCAGCAACTACACATGTATTCTGAACGTCAGCATCTCGTCCTaGTTTTTGTCTGACTCGTAC +
Preference number: 5 (lower is better)
Translates to: EGREVQRDEISNYTCILNVSISS*FLSDSY
Trigger: GTACGAGTCAGACAAAAACAAGGACGAGATGCTGAC...GTTCAGAATACATGTGTAGTTGCTGATTTCATCCCTCTGGACTTCACGCCCTTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000006128.7