Pregenerated sensors for RCHY1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000029397Ensembl transcript IDs: ENSMUST00000031345.15, ENSMUST00000169948.2
Found 50 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CAA 90 bp | GGCTACACAGAGAGACCCTGTCTGGAAGAACCAAAAGAGAGAGAGAGAGAGAGATTCCATCCAGAGATCTaGAATCCTCAGGTGTTCACG | + |
|
Preference number: 3 (lower is better) Translates to: GYTERPCLEEPKERERERFHPEI*NPQVFT Trigger: CGTGAACACCTGAGGATTCAAGATCTCTGGATGGAA...TCTCTCTCTCTCTCTCTCTTTTGGTTCTTCCAGACAGGGTCTCTCTGTGTAGCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031345.15 ENSMUST00000169948.2 |
||
| 3UTR TCA 72 bp | CCCAGTAAGCTCTATTACATTTCCATCCAGAGATCTTaGATCCTCAGGTGTTCACGCTGTGACCCCCTGTTG | + |
|
Preference number: 3 (lower is better) Translates to: PSKLYYISIQRS*ILRCSRCDPLL Trigger: CAACAGGGGGTCACAGCGTGAACACCTGAGGATTCAAGATCTCTGGATGGAAATGTAATAGAGCTTACTGGG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000031345.15 ENSMUST00000169948.2 |
||
| 3UTR-3UTR CAA 90 bp | TGTCTGGAAGAACCAAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACTGGGACTAACATCATaGGCTTCAAAACTTGACACT | + |
|
Preference number: 3 (lower is better) Translates to: CLEEPKERERERERERERLGLTS*ASKLDT Trigger: AGTGTCAAGTTTTGAAGCCAATGATGTTAGTCCCAG...TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTTGGTTCTTCCAGACA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000031345.15 ENSMUST00000169948.2 |
||
| CDS-3UTR TCA 90 bp | CTGTCTGGAAGAACCAAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCCACACGGCAAGACGTaGGCAACAACACGGGAGGTG | + |
|
Preference number: 4 (lower is better) Translates to: LSGRTKREREREREREREPHGKT*ATTREV Trigger: CACCTCCCGTGTTGTTGCTCACGTCTTGCCGTGTGG...CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTTGGTTCTTCCAGACAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031345.15 ENSMUST00000169948.2 |
||
| CDS-3UTR TCA 90 bp | CCAGTAAGCTCTATTACATTTCCATCCAGAGATCTTGAATCCTCAGGTGTTCACCCACACGGCAAGACGTaGGCAACAACACGGGAGGTG | + |
|
Preference number: 4 (lower is better) Translates to: PVSSITFPSRDLESSGVHPHGKT*ATTREV Trigger: CACCTCCCGTGTTGTTGCTCACGTCTTGCCGTGTGG...GTGAACACCTGAGGATTCAAGATCTCTGGATGGAAATGTAATAGAGCTTACTGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031345.15 ENSMUST00000169948.2 |
||
| CDS-3UTR TCA 90 bp | TTTTACAGAGCTTCATCTCCATCACAGAGCTGTTCTCTAGCCAAGGACAGGCTTAAGTCTGCTGGGCCTTaGGGAGACAAGCTCTGTCAT | + |
|
Preference number: 4 (lower is better) Translates to: FYRASSPSQSCSLAKDRLKSAGP*GDKLCH Trigger: ATGACAGAGCTTGTCTCCTCAAGGCCCAGCAGACTT...AAGCCTGTCCTTGGCTAGAGAACAGCTCTGTGATGGAGATGAAGCTCTGTAAAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000169948.2 |
||
| CDS-3UTR CCA 90 bp | AACACTGGGATCTTTTACAGAGCTTCATCTCCATCACAGAGCTGTTCTCTAGCCGGTATTCGGATGGCATaGGAGTCTGTGCTACCTCAG | + |
|
Preference number: 4 (lower is better) Translates to: NTGIFYRASSPSQSCSLAGIRMA*ESVLPQ Trigger: CTGAGGTAGCACAGACTCCCATGCCATCCGAATACC...GGCTAGAGAACAGCTCTGTGATGGAGATGAAGCTCTGTAAAAGATCCCAGTGTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031345.15 ENSMUST00000169948.2 |
||
| CDS-3UTR CCA 90 bp | TGTCTGGAAGAACCAAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGTATTCGGATGGCATaGGAGTCTGTGCTACCTCAG | + |
|
Preference number: 4 (lower is better) Translates to: CLEEPKERERERERERERGIRMA*ESVLPQ Trigger: CTGAGGTAGCACAGACTCCCATGCCATCCGAATACC...TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTTGGTTCTTCCAGACA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031345.15 ENSMUST00000169948.2 |
||
| CDS-3UTR CCA 90 bp | ACACTAAAGGAATTTCCAATCTACACACGCTCAGAGGCTTCACCCAGTAATCGCGCTGATGATCTTCATTaGTATCGTGACACAGCCGGC | + |
|
Preference number: 4 (lower is better) Translates to: TLKEFPIYTRSEASPSNRADDLH*YRDTAG Trigger: GCCGGCTGTGTCACGATACCAATGAAGATCATCAGC...GCGATTACTGGGTGAAGCCTCTGAGCGTGTGTAGATTGGAAATTCCTTTAGTGT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031345.15 |
||
| CDS-3UTR CCA 90 bp | AACACTGGGATCTTTTACAGAGCTTCATCTCCATCACAGAGCTGTTCTCTAGCCCCACAGCTCTCACAGTaGTACTGCCTCTTATCTTTG | + |
|
Preference number: 4 (lower is better) Translates to: NTGIFYRASSPSQSCSLAPQLSQ*YCLLSL Trigger: CAAAGATAAGAGGCAGTACCACTGTGAGAGCTGTGG...GGCTAGAGAACAGCTCTGTGATGGAGATGAAGCTCTGTAAAAGATCCCAGTGTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000031345.15 ENSMUST00000169948.2 |
||
| CDS-3UTR CCA 90 bp | GGCTACACAGAGAGACCCTGTCTGGAAGAACCAAAAGAGAGAGAGAGAGAGAGACCTAAGATATGGAACTaGACTGTGGATCGTCCATTA | + |
|
Preference number: 4 (lower is better) Translates to: GYTERPCLEEPKERERERPKIWN*TVDRPL Trigger: TAATGGACGATCCACAGTCCAGTTCCATATCTTAGG...TCTCTCTCTCTCTCTCTCTTTTGGTTCTTCCAGACAGGGTCTCTCTGTGTAGCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031345.15 ENSMUST00000169948.2 |
||
| CDS-3UTR GCA 90 bp | TGTCTGGAAGAACCAAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACAGTCTTCACAAGTCTaGTGGGCATGTTGGAGTTTT | + |
|
Preference number: 4 (lower is better) Translates to: CLEEPKERERERERERERQSSQV*WACWSF Trigger: AAAACTCCAACATGCCCAGCAGACTTGTGAAGACTG...TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTTGGTTCTTCCAGACA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031345.15 |
||
| CDS-3UTR CCA 90 bp | CCTGTCTGGAAGAACCAAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATATGGAACTGGACTGTaGATCGTCCATTACAGTCAT | + |
|
Preference number: 4 (lower is better) Translates to: PVWKNQKRERERERERERYGTGL*IVHYSH Trigger: ATGACTGTAATGGACGATCCACAGTCCAGTTCCATA...TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTTGGTTCTTCCAGACAGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031345.15 ENSMUST00000169948.2 |
||
| CDS-3UTR CCA 90 bp | TTTTACAGAGCTTCATCTCCATCACAGAGCTGTTCTCTAGCCAAGGACAGGCTTTCTTCACAAGTCTGCTaGGCATGTTGGAGTTTTTCA | + |
|
Preference number: 4 (lower is better) Translates to: FYRASSPSQSCSLAKDRLSSQVC*ACWSFS Trigger: TGAAAAACTCCAACATGCCCAGCAGACTTGTGAAGA...AAGCCTGTCCTTGGCTAGAGAACAGCTCTGTGATGGAGATGAAGCTCTGTAAAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000031345.15 |
||
| CDS-3UTR CCA 90 bp | GAACACTGGGATCTTTTACAGAGCTTCATCTCCATCACAGAGCTGTTCTCTAGCTTCATGCCTAAGATATaGAACTGGACTGTGGATCGT | + |
|
Preference number: 4 (lower is better) Translates to: EHWDLLQSFISITELFSSFMPKI*NWTVDR Trigger: ACGATCCACAGTCCAGTTCCATATCTTAGGCATGAA...GCTAGAGAACAGCTCTGTGATGGAGATGAAGCTCTGTAAAAGATCCCAGTGTTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031345.15 ENSMUST00000169948.2 |
||
| CDS-3UTR GCA 90 bp | CTGTCTGGAAGAACCAAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATTCTCCAAACAATGTaGTACAGTCTTCACAAGTCT | + |
|
Preference number: 4 (lower is better) Translates to: LSGRTKREREREREREREILQTM*YSLHKS Trigger: AGACTTGTGAAGACTGTAGCACATTGTTTGGAGAAT...CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTTGGTTCTTCCAGACAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031345.15 ENSMUST00000169948.2 |
||
| CDS-3UTR CCA 90 bp | GATGAACGAACACTGGGATCTTTTACAGAGCTTCATCTCCATCACAGAGCTGTTTATGGAACTGGACTGTaGATCGTCCATTACAGTCAT | + |
|
Preference number: 4 (lower is better) Translates to: DERTLGSFTELHLHHRAVYGTGL*IVHYSH Trigger: ATGACTGTAATGGACGATCCACAGTCCAGTTCCATA...AACAGCTCTGTGATGGAGATGAAGCTCTGTAAAAGATCCCAGTGTTCGTTCATC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031345.15 ENSMUST00000169948.2 |
||
| CDS-3UTR CCA 90 bp | ATGAACGAACACTGGGATCTTTTACAGAGCTTCATCTCCATCACAGAGCTGTTCCCTAAGATATGGAACTaGACTGTGGATCGTCCATTA | + |
|
Preference number: 4 (lower is better) Translates to: MNEHWDLLQSFISITELFPKIWN*TVDRPL Trigger: TAATGGACGATCCACAGTCCAGTTCCATATCTTAGG...GAACAGCTCTGTGATGGAGATGAAGCTCTGTAAAAGATCCCAGTGTTCGTTCAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031345.15 ENSMUST00000169948.2 |
||
| CDS-3UTR CCA 90 bp | ATGAACGAACACTGGGATCTTTTACAGAGCTTCATCTCCATCACAGAGCTGTTCTTCATGCCTAAGATATaGAACTGGACTGTGGATCGT | + |
|
Preference number: 4 (lower is better) Translates to: MNEHWDLLQSFISITELFFMPKI*NWTVDR Trigger: ACGATCCACAGTCCAGTTCCATATCTTAGGCATGAA...GAACAGCTCTGTGATGGAGATGAAGCTCTGTAAAAGATCCCAGTGTTCGTTCAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031345.15 ENSMUST00000169948.2 |
||
| CDS-3UTR GCA 90 bp | GAACACTGGGATCTTTTACAGAGCTTCATCTCCATCACAGAGCTGTTCTCTAGCATTCTCCAAACAATGTaGTACAGTCTTCACAAGTCT | + |
|
Preference number: 4 (lower is better) Translates to: EHWDLLQSFISITELFSSILQTM*YSLHKS Trigger: AGACTTGTGAAGACTGTAGCACATTGTTTGGAGAAT...GCTAGAGAACAGCTCTGTGATGGAGATGAAGCTCTGTAAAAGATCCCAGTGTTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031345.15 ENSMUST00000169948.2 |
||
| CDS-3UTR GCA 90 bp | GAACACTGGGATCTTTTACAGAGCTTCATCTCCATCACAGAGCTGTTCTCTAGCACAGGTGGCAAATACTaGAGTAATATTCTCCAAACA | + |
|
Preference number: 4 (lower is better) Translates to: EHWDLLQSFISITELFSSTGGKY*SNILQT Trigger: TGTTTGGAGAATATTACTGCAGTATTTGCCACCTGT...GCTAGAGAACAGCTCTGTGATGGAGATGAAGCTCTGTAAAAGATCCCAGTGTTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031345.15 ENSMUST00000169948.2 |
||
| CDS-3UTR GCA 90 bp | AGAGAGACCCTGTCTGGAAGAACCAAAAGAGAGAGAGAGAGAGAGAGAGAGAGAAAAGCTTACATTTCATaGCTAAGATATGGAACTGGA | + |
|
Preference number: 4 (lower is better) Translates to: RETLSGRTKRERERERERKAYIS*LRYGTG Trigger: TCCAGTTCCATATCTTAGGCATGAAATGTAAGCTTT...TCTCTCTCTCTCTCTCTCTCTCTCTCTTTTGGTTCTTCCAGACAGGGTCTCTCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000031345.15 ENSMUST00000169948.2 |
||
| CDS-3UTR CCA 90 bp | TACAATCACCCAGTAAGCTCTATTACATTTCCATCCAGAGATCTTGAATCCTCACCACAGCTCTCACAGTaGTACTGCCTCTTATCTTTG | + |
|
Preference number: 4 (lower is better) Translates to: YNHPVSSITFPSRDLESSPQLSQ*YCLLSL Trigger: CAAAGATAAGAGGCAGTACCACTGTGAGAGCTGTGG...TGAGGATTCAAGATCTCTGGATGGAAATGTAATAGAGCTTACTGGGTGATTGTA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031345.15 ENSMUST00000169948.2 |
||
| CDS-3UTR CCA 90 bp | TGTCTGGAAGAACCAAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGAATGCATACACAATaGGCATCTGTAACCTTCTTT | + |
|
Preference number: 4 (lower is better) Translates to: CLEEPKERERERERERERRMHTQ*ASVTFF Trigger: AAAGAAGGTTACAGATGCCCATTGTGTATGCATTCT...TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTTGGTTCTTCCAGACA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031345.15 ENSMUST00000169948.2 |
||
| CDS-3UTR CAA 90 bp | GATCTTGAATCCTCAGGTGTTCACGCTGTGACCCCCTGTTGTGACAGTGGTATGTGTCCTCCAAGCATATaGGACAATTCTGCCGGGAAA | + |
|
Preference number: 5 (lower is better) Translates to: DLESSGVHAVTPCCDSGMCPPSI*DNSAGK Trigger: TTTCCCGGCAGAATTGTCCAATATGCTTGGAGGACA...CATACCACTGTCACAACAGGGGGTCACAGCGTGAACACCTGAGGATTCAAGATC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000031345.15 ENSMUST00000169948.2 |
||
| CDS-3UTR CAA 90 bp | TGTCTGGAAGAACCAAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATCTACGGCCTCCAGCTaGGGCAGTATTGTAGGAGTC | + |
|
Preference number: 5 (lower is better) Translates to: CLEEPKERERERERERERSTASS*GSIVGV Trigger: GACTCCTACAATACTGCCCAAGCTGGAGGCCGTAGA...TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTTGGTTCTTCCAGACA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031345.15 ENSMUST00000169948.2 |
||
| CDS CCA 90 bp | CATTGCAGAGAATGTCAACAGTCACGTTCTGGTATTCGGATGGCATaGGAGTCTGTGCTACCTCAGTATCTAGTTGTCTCCAGTACCGAG | + |
|
Preference number: 5 (lower is better) Translates to: HCRECQQSRSGIRMA*ESVLPQYLVVSSTE Trigger: CTCGGTACTGGAGACAACTAGATACTGAGGTAGCACAGACTCCCATGCCATCCGAATACCAGAACGTGACTGTTGACATTCTCTGCAATG 49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031345.15 ENSMUST00000169948.2 |
||
| CDS-3UTR CAA 90 bp | GATCTTGAATCCTCAGGTGTTCACGCTGTGACCCCCTGTTGTGACAGTGGTATGCGTCCATTACAGTCATaGCAGAGAATGTCAACAGTC | + |
|
Preference number: 5 (lower is better) Translates to: DLESSGVHAVTPCCDSGMRPLQS*QRMSTV Trigger: GACTGTTGACATTCTCTGCAATGACTGTAATGGACG...CATACCACTGTCACAACAGGGGGTCACAGCGTGAACACCTGAGGATTCAAGATC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000031345.15 ENSMUST00000169948.2 |
||
| CDS-3UTR CAA 90 bp | CCAGTAAGCTCTATTACATTTCCATCCAGAGATCTTGAATCCTCAGGTGTTCACCAAGTCTGCTGGGCCTaGAGGAGACAAGCTCTGTCA | + |
|
Preference number: 5 (lower is better) Translates to: PVSSITFPSRDLESSGVHQVCWA*RRQALS Trigger: TGACAGAGCTTGTCTCCTCAAGGCCCAGCAGACTTG...GTGAACACCTGAGGATTCAAGATCTCTGGATGGAAATGTAATAGAGCTTACTGG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000169948.2 |
||
| CDS GCA 90 bp | TGCCTAAGATATGGAACTGGACTGTGGATCGTCCATTACAGTCATTaGAGAGAATGTCAACAGTCACGTTCTGGTATTCGGATGGCATGG | + |
|
Preference number: 5 (lower is better) Translates to: CLRYGTGLWIVHYSH*RECQQSRSGIRMAW Trigger: CCATGCCATCCGAATACCAGAACGTGACTGTTGACATTCTCTGCAATGACTGTAATGGACGATCCACAGTCCAGTTCCATATCTTAGGCA 47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031345.15 ENSMUST00000169948.2 |
||
| CDS-3UTR CAA 90 bp | ATGAACGAACACTGGGATCTTTTACAGAGCTTCATCTCCATCACAGAGCTGTTCTCACAACAAGGTGCCTaGAGGAGACAAGCTCTGTCA | + |
|
Preference number: 5 (lower is better) Translates to: MNEHWDLLQSFISITELFSQQGA*RRQALS Trigger: TGACAGAGCTTGTCTCCTCAAGGCACCTTGTTGTGA...GAACAGCTCTGTGATGGAGATGAAGCTCTGTAAAAGATCCCAGTGTTCGTTCAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031345.15 |
||
| CDS-3UTR CAA 90 bp | CTGTCTGGAAGAACCAAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTGGAGTTTTTCACAGTaGATGCACTGCACTTCCTTG | + |
|
Preference number: 5 (lower is better) Translates to: LSGRTKREREREREREREWSFSQ*MHCTSL Trigger: CAAGGAAGTGCAGTGCATCAACTGTGAAAAACTCCA...CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTTGGTTCTTCCAGACAG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000031345.15 |
||
| CDS-3UTR CAA 90 bp | GATCTTGAATCCTCAGGTGTTCACGCTGTGACCCCCTGTTGTGACAGTGGTATGTACTGCCTCTTATCTTaGTCAAACAGGTGGCAAATA | + |
|
Preference number: 5 (lower is better) Translates to: DLESSGVHAVTPCCDSGMYCLLS*SNRWQI Trigger: TATTTGCCACCTGTTTGACAAAGATAAGAGGCAGTA...CATACCACTGTCACAACAGGGGGTCACAGCGTGAACACCTGAGGATTCAAGATC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000031345.15 ENSMUST00000169948.2 |
||
| CDS-3UTR CAA 90 bp | TTTTACAGAGCTTCATCTCCATCACAGAGCTGTTCTCTAGCCAAGGACAGGCTTTGTCCTCCAAGCATATaGGACAATTCTGCCGGGAAA | + |
|
Preference number: 5 (lower is better) Translates to: FYRASSPSQSCSLAKDRLCPPSI*DNSAGK Trigger: TTTCCCGGCAGAATTGTCCAATATGCTTGGAGGACA...AAGCCTGTCCTTGGCTAGAGAACAGCTCTGTGATGGAGATGAAGCTCTGTAAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031345.15 ENSMUST00000169948.2 |
||
| CDS-3UTR CAA 90 bp | ACACTAAAGGAATTTCCAATCTACACACGCTCAGAGGCTTCACCCAGTAATCGCCGTCCATTACAGTCATaGCAGAGAATGTCAACAGTC | + |
|
Preference number: 5 (lower is better) Translates to: TLKEFPIYTRSEASPSNRRPLQS*QRMSTV Trigger: GACTGTTGACATTCTCTGCAATGACTGTAATGGACG...GCGATTACTGGGTGAAGCCTCTGAGCGTGTGTAGATTGGAAATTCCTTTAGTGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031345.15 ENSMUST00000169948.2 |
||
| CDS-3UTR CAA 90 bp | TACAATCACCCAGTAAGCTCTATTACATTTCCATCCAGAGATCTTGAATCCTCATCTACGGCCTCCAGCTaGGGCAGTATTGTAGGAGTC | + |
|
Preference number: 5 (lower is better) Translates to: YNHPVSSITFPSRDLESSSTASS*GSIVGV Trigger: GACTCCTACAATACTGCCCAAGCTGGAGGCCGTAGA...TGAGGATTCAAGATCTCTGGATGGAAATGTAATAGAGCTTACTGGGTGATTGTA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031345.15 ENSMUST00000169948.2 |
||
| CDS GCA 90 bp | CTCCAGCTTGGGCAGTATTGTAGGAGTCACAAAGCTTACATTTCATaGCTAAGATATGGAACTGGACTGTGGATCGTCCATTACAGTCAT | + |
|
Preference number: 5 (lower is better) Translates to: LQLGQYCRSHKAYIS*LRYGTGLWIVHYSH Trigger: ATGACTGTAATGGACGATCCACAGTCCAGTTCCATATCTTAGGCATGAAATGTAAGCTTTGTGACTCCTACAATACTGCCCAAGCTGGAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031345.15 ENSMUST00000169948.2 |
||
| CDS GCA 90 bp | TGTCAAACAGGTGGCAAATACTGCAGTAATATTCTCCAAACAATGTaGTACAGTCTTCACAAGTCTGCTGGGCATGTTGGAGTTTTTCAC | + |
|
Preference number: 5 (lower is better) Translates to: CQTGGKYCSNILQTM*YSLHKSAGHVGVFH Trigger: GTGAAAAACTCCAACATGCCCAGCAGACTTGTGAAGACTGTAGCACATTGTTTGGAGAATATTACTGCAGTATTTGCCACCTGTTTGACA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000031345.15 |
||
| CDS GCA 90 bp | CACAGTGGTACTGCCTCTTATCTTTGTCAAACAGGTGGCAAATACTaGAGTAATATTCTCCAAACAATGTGCTACAGTCTTCACAAGTCT | + |
|
Preference number: 5 (lower is better) Translates to: HSGTASYLCQTGGKY*SNILQTMCYSLHKS Trigger: AGACTTGTGAAGACTGTAGCACATTGTTTGGAGAATATTACTGCAGTATTTGCCACCTGTTTGACAAAGATAAGAGGCAGTACCACTGTG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031345.15 ENSMUST00000169948.2 |
||
| CDS-3UTR CAA 90 bp | TACAATCACCCAGTAAGCTCTATTACATTTCCATCCAGAGATCTTGAATCCTCAATGCACTGCACTTCCTaGACTTTGAAACGATCTAGC | + |
|
Preference number: 5 (lower is better) Translates to: YNHPVSSITFPSRDLESSMHCTS*TLKRSS Trigger: GCTAGATCGTTTCAAAGTCAAGGAAGTGCAGTGCAT...TGAGGATTCAAGATCTCTGGATGGAAATGTAATAGAGCTTACTGGGTGATTGTA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031345.15 |
||
| CDS-3UTR CAA 90 bp | CCAGTAAGCTCTATTACATTTCCATCCAGAGATCTTGAATCCTCAGGTGTTCACTACTGCCTCTTATCTTaGTCAAACAGGTGGCAAATA | + |
|
Preference number: 5 (lower is better) Translates to: PVSSITFPSRDLESSGVHYCLLS*SNRWQI Trigger: TATTTGCCACCTGTTTGACAAAGATAAGAGGCAGTA...GTGAACACCTGAGGATTCAAGATCTCTGGATGGAAATGTAATAGAGCTTACTGG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031345.15 ENSMUST00000169948.2 |
||
| CDS CCA 72 bp | GAATGTCAACAGTCACGTTCTGGTATTCGGATGGCATaGGAGTCTGTGCTACCTCAGTATCTAGTTGTCTCC | + |
|
Preference number: 6 (lower is better) Translates to: ECQQSRSGIRMA*ESVLPQYLVVS Trigger: GGAGACAACTAGATACTGAGGTAGCACAGACTCCCATGCCATCCGAATACCAGAACGTGACTGTTGACATTC 49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031345.15 ENSMUST00000169948.2 |
||
| CDS CAA 90 bp | ATGCCTAAGATATGGAACTGGACTGTGGATCGTCCATTACAGTCATaGCAGAGAATGTCAACAGTCACGTTCTGGTATTCGGATGGCATG | + |
|
Preference number: 6 (lower is better) Translates to: MPKIWNWTVDRPLQS*QRMSTVTFWYSDGM Trigger: CATGCCATCCGAATACCAGAACGTGACTGTTGACATTCTCTGCAATGACTGTAATGGACGATCCACAGTCCAGTTCCATATCTTAGGCAT 46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031345.15 ENSMUST00000169948.2 |
||
| CDS GCA 72 bp | CCAATCCTACAAATCCCACAGCTCTCACAGTGGTACTaGCTCTTATCTTTGTCAAACAGGTGGCAAATACTG | + |
|
Preference number: 6 (lower is better) Translates to: PILQIPQLSQWY*LLSLSNRWQIL Trigger: CAGTATTTGCCACCTGTTTGACAAAGATAAGAGGCAGTACCACTGTGAGAGCTGTGGGATTTGTAGGATTGG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031345.15 ENSMUST00000169948.2 |
||
| CDS CCA 72 bp | TTTGGACCAATCCTACAAATCCCACAGCTCTCACAGTaGTACTGCCTCTTATCTTTGTCAAACAGGTGGCAA | + |
|
Preference number: 6 (lower is better) Translates to: FGPILQIPQLSQ*YCLLSLSNRWQ Trigger: TTGCCACCTGTTTGACAAAGATAAGAGGCAGTACCACTGTGAGAGCTGTGGGATTTGTAGGATTGGTCCAAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031345.15 ENSMUST00000169948.2 |
||
| CDS GCA 72 bp | GGGCAGTATTGTAGGAGTCACAAAGCTTACATTTCATaGCTAAGATATGGAACTGGACTGTGGATCGTCCAT | + |
|
Preference number: 6 (lower is better) Translates to: GQYCRSHKAYIS*LRYGTGLWIVH Trigger: ATGGACGATCCACAGTCCAGTTCCATATCTTAGGCATGAAATGTAAGCTTTGTGACTCCTACAATACTGCCC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031345.15 ENSMUST00000169948.2 |
||
| CDS CAA 72 bp | TCACAAGTCTGCTGGGCATGTTGGAGTTTTTCACAGTaGATGCACTGCACTTCCTTGACTTTGAAACGATCT | + |
|
Preference number: 6 (lower is better) Translates to: SQVCWACWSFSQ*MHCTSLTLKRS Trigger: AGATCGTTTCAAAGTCAAGGAAGTGCAGTGCATCAACTGTGAAAAACTCCAACATGCCCAGCAGACTTGTGA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000031345.15 |
||
| CDS CAA 72 bp | ATATGGAACTGGACTGTGGATCGTCCATTACAGTCATaGCAGAGAATGTCAACAGTCACGTTCTGGTATTCG | + |
|
Preference number: 6 (lower is better) Translates to: IWNWTVDRPLQS*QRMSTVTFWYS Trigger: CGAATACCAGAACGTGACTGTTGACATTCTCTGCAATGACTGTAATGGACGATCCACAGTCCAGTTCCATAT 44% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031345.15 ENSMUST00000169948.2 |
||
| CDS CCA 72 bp | TCACAAAGCTTACATTTCATGCCTAAGATATGGAACTaGACTGTGGATCGTCCATTACAGTCATTGCAGAGA | + |
|
Preference number: 6 (lower is better) Translates to: SQSLHFMPKIWN*TVDRPLQSLQR Trigger: TCTCTGCAATGACTGTAATGGACGATCCACAGTCCAGTTCCATATCTTAGGCATGAAATGTAAGCTTTGTGA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031345.15 ENSMUST00000169948.2 |
||
| CDS CAA 90 bp | TCCAAGCATATTGGACAATTCTGCCGGGAAACATTTTCAATACACTaGTGTTTTCCTCGAAGATTCGTGGTTAGGCATAAATTACATTTC | + |
|
Preference number: 6 (lower is better) Translates to: SKHIGQFCRETFSIH*CFPRRFVVRHKLHF Trigger: GAAATGTAATTTATGCCTAACCACGAATCTTCGAGGAAAACACAAGTGTATTGAAAATGTTTCCCGGCAGAATTGTCCAATATGCTTGGA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000031345.15 ENSMUST00000169948.2 |
||