Pregenerated sensors for RCCD1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000038930Ensembl transcript IDs: ENSMUST00000047362.11, ENSMUST00000121882.8, ENSMUST00000123189.2
Found 109 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | TGTAGCTATGGAAGCTTTGATGTCACCCAGAGGCGTGTACCTGGCTaGCACTATCCCAGTGAGGGTTTCTTGAGTTCCAGTATGAGATGG | + |
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Preference number: 1 (lower is better) Translates to: CSYGSFDVTQRRVPG*HYPSEGFLSSSMRW Trigger: CCATCTCATACTGGAACTCAAGAAACCCTCACTGGGATAGTGCCAGCCAGGTACACGCCTCTGGGTGACATCAAAGCTTCCATAGCTACA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047362.11 |
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| 3UTR CCA 90 bp | GGCTGGCACTATCCCAGTGAGGGTTTCTTGAGTTCCAGTATGAGATaGCCTGACCTGCTGCCAAAAAGAGTAGCAGTCATTTCTGTAGTG | + |
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Preference number: 1 (lower is better) Translates to: GWHYPSEGFLSSSMR*PDLLPKRVAVISVV Trigger: CACTACAGAAATGACTGCTACTCTTTTTGGCAGCAGGTCAGGCCATCTCATACTGGAACTCAAGAAACCCTCACTGGGATAGTGCCAGCC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000047362.11 |
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| 3UTR CCA 90 bp | CAACCACATAGAGAGGCTGTCTGGTGGGCTGGGCCATTCCTGTCATaGAGTCAGCAACTTTGCACATCTACAAGTTATCTGTGTAATCAC | + |
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Preference number: 1 (lower is better) Translates to: QPHREAVWWAGPFLS*SQQLCTSTSYLCNH Trigger: GTGATTACACAGATAACTTGTAGATGTGCAAAGTTGCTGACTCCATGACAGGAATGGCCCAGCCCACCAGACAGCCTCTCTATGTGGTTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047362.11 |
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| 3UTR TCA 90 bp | AAGCACTATATTTATTCTGTCTGTCTGTGCCAGTTCTGCCCACACTaGCTGATCTTGAAAACCTGTCAGTCTGCTCTTCACACACATATA | + |
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Preference number: 1 (lower is better) Translates to: KHYIYSVCLCQFCPH*LILKTCQSALHTHI Trigger: TATATGTGTGTGAAGAGCAGACTGACAGGTTTTCAAGATCAGTCAGTGTGGGCAGAACTGGCACAGACAGACAGAATAAATATAGTGCTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047362.11 |
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| 3UTR TCA 90 bp | TATCTTCAATTCTTTCATACATGCCTTGTAAGCTTTGTCTTATTCTaGAATCATGCACCTTTAATCCCAGCACTTAGAAGGCAGAGGAGA | + |
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Preference number: 1 (lower is better) Translates to: YLQFFHTCLVSFVLF*NHAPLIPALRRQRR Trigger: TCTCCTCTGCCTTCTAAGTGCTGGGATTAAAGGTGCATGATTTCAGAATAAGACAAAGCTTACAAGGCATGTATGAAAGAATTGAAGATA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000047362.11 ENSMUST00000121882.8 |
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| 3UTR-3UTR CCA 90 bp | TATATGTGTGAACACACATGCTTGTCTGACCTGTTGAGTTTTTCTCCAGTCTCCCATAGAGAGGCTGTCTaGTGGGCTGGGCCATTCCTG | + |
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Preference number: 2 (lower is better) Translates to: YMCEHTCLSDLLSFSPVSHREAV*WAGPFL Trigger: CAGGAATGGCCCAGCCCACCAGACAGCCTCTCTATG...GGAGACTGGAGAAAAACTCAACAGGTCAGACAAGCATGTGTGTTCACACATATA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000047362.11 |
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| 3UTR CAA 90 bp | CATTTTGCAGCTATTAAAGCCTCTGGGCTGGGTATAGCTAAGCTGTaGGTGCACGTGGAAGGCCTGGCACTACTCCAGAAATTAGATATA | + |
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Preference number: 2 (lower is better) Translates to: HFAAIKASGLGIAKL*VHVEGLALLQKLDI Trigger: TATATCTAATTTCTGGAGTAGTGCCAGGCCTTCCACGTGCACCAACAGCTTAGCTATACCCAGCCCAGAGGCTTTAATAGCTGCAAAATG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047362.11 |
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| 3UTR-3UTR TCA 90 bp | TATATGTGTGAACACACATGCTTGTCTGACCTGTTGAGTTTTTCTCCAGTCTCCCCTAGGACAGCATGTTaGAGCAGAGTTCTTTCTCAC | + |
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Preference number: 2 (lower is better) Translates to: YMCEHTCLSDLLSFSPVSPRTAC*SRVLSH Trigger: GTGAGAAAGAACTCTGCTTCAACATGCTGTCCTAGG...GGAGACTGGAGAAAAACTCAACAGGTCAGACAAGCATGTGTGTTCACACATATA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000047362.11 |
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| 3UTR-3UTR TCA 90 bp | GGAGTCAGCAACTTTGCACATCTACAAGTTATCTGTGTAATCACGTCCACAATGCAGTTCTGCCCACACTaGCTGATCTTGAAAACCTGT | + |
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Preference number: 2 (lower is better) Translates to: GVSNFAHLQVICVITSTMQFCPH*LILKTC Trigger: ACAGGTTTTCAAGATCAGTCAGTGTGGGCAGAACTG...CATTGTGGACGTGATTACACAGATAACTTGTAGATGTGCAAAGTTGCTGACTCC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047362.11 |
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| 3UTR CCA 72 bp | AGAGAGGCTGTCTGGTGGGCTGGGCCATTCCTGTCATaGAGTCAGCAACTTTGCACATCTACAAGTTATCTG | + |
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Preference number: 3 (lower is better) Translates to: REAVWWAGPFLS*SQQLCTSTSYL Trigger: CAGATAACTTGTAGATGTGCAAAGTTGCTGACTCCATGACAGGAATGGCCCAGCCCACCAGACAGCCTCTCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047362.11 |
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| 3UTR-3UTR CAA 90 bp | CATCACTACTCTTCCCCAAAGCACTATATTTATTCTGTCTGTCTGTGCCAGTTCGGTATAGCTAAGCTGTaGGTGCACGTGGAAGGCCTG | + |
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Preference number: 3 (lower is better) Translates to: HHYSSPKHYIYSVCLCQFGIAKL*VHVEGL Trigger: CAGGCCTTCCACGTGCACCAACAGCTTAGCTATACC...GAACTGGCACAGACAGACAGAATAAATATAGTGCTTTGGGGAAGAGTAGTGATG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047362.11 |
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| 3UTR TCA 72 bp | TTAATCCCAGCACTTAGAAGGCAGAGGAGATCGCTGTaGACCTTGTTTCAAAACTTAGGTTTCCATGCACCT | + |
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Preference number: 3 (lower is better) Translates to: LIPALRRQRRSL*TLFQNLGFHAP Trigger: AGGTGCATGGAAACCTAAGTTTTGAAACAAGGTTCACAGCGATCTCCTCTGCCTTCTAAGTGCTGGGATTAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000047362.11 ENSMUST00000121882.8 |
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| 3UTR TCA 72 bp | AAAAAGAGTAGCAGTCATTTCTGTAGTGCAATTTCTTaGGGTATATGTGTGAACACACATGCTTGTCTGACC | + |
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Preference number: 3 (lower is better) Translates to: KKSSSHFCSAIS*GICVNTHACLT Trigger: GGTCAGACAAGCATGTGTGTTCACACATATACCTCAAGAAATTGCACTACAGAAATGACTGCTACTCTTTTT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000047362.11 |
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| CDS-3UTR GCA 90 bp | GGACAGCATGTTGAAGCAGAGTTCTTTCTCACCCAGGCACATAAGTGGGGATCCTGGCCCAGCTGTCCATaGCTGCCCGCACCCCAGGAG | + |
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Preference number: 4 (lower is better) Translates to: GQHVEAEFFLTQAHKWGSWPSCP*LPAPQE Trigger: CTCCTGGGGTGCGGGCAGGCATGGACAGCTGGGCCA...GGATCCCCACTTATGTGCCTGGGTGAGAAAGAACTCTGCTTCAACATGCTGTCC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000047362.11 ENSMUST00000121882.8 |
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| CDS-3UTR GCA 90 bp | CTGTTCCCTGTAGATGACAACCACATAGAGAGGCTGTCTGGTGGGCTGGGCCATCCGCAGGCCCTGCAGTaGCTCCAACAGTCTTGGCTC | + |
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Preference number: 4 (lower is better) Translates to: LFPVDDNHIERLSGGLGHPQALQ*LQQSWL Trigger: GAGCCAAGACTGTTGGAGGCACTGCAGGGCCTGCGG...ATGGCCCAGCCCACCAGACAGCCTCTCTATGTGGTTGTCATCTACAGGGAACAG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047362.11 |
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| CDS-3UTR GCA 90 bp | AACCACATAGAGAGGCTGTCTGGTGGGCTGGGCCATTCCTGTCATGGAGTCAGCGCCATCCGCAGGCCCTaGAGTGCCTCCAACAGTCTT | + |
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Preference number: 4 (lower is better) Translates to: NHIERLSGGLGHSCHGVSAIRRP*SASNSL Trigger: AAGACTGTTGGAGGCACTGCAGGGCCTGCGGATGGC...GCTGACTCCATGACAGGAATGGCCCAGCCCACCAGACAGCCTCTCTATGTGGTT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047362.11 |
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| CDS-3UTR CCA 90 bp | GGACAGCATGTTGAAGCAGAGTTCTTTCTCACCCAGGCACATAAGTGGGGATCCGCGGACCCGCAGCTCTaGGGCCAGAGGCTGGCAGAA | + |
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Preference number: 4 (lower is better) Translates to: GQHVEAEFFLTQAHKWGSADPQL*GQRLAE Trigger: TTCTGCCAGCCTCTGGCCCCAGAGCTGCGGGTCCGC...GGATCCCCACTTATGTGCCTGGGTGAGAAAGAACTCTGCTTCAACATGCTGTCC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000047362.11 ENSMUST00000121882.8 |
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| CDS-3UTR GCA 90 bp | GGACAGCATGTTGAAGCAGAGTTCTTTCTCACCCAGGCACATAAGTGGGGATCCGTGGGCAGGGCCAGCTaGCCTGACTCATTCCAGCCC | + |
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Preference number: 4 (lower is better) Translates to: GQHVEAEFFLTQAHKWGSVGRAS*PDSFQP Trigger: GGGCTGGAATGAGTCAGGGCAGCTGGCCCTGCCCAC...GGATCCCCACTTATGTGCCTGGGTGAGAAAGAACTCTGCTTCAACATGCTGTCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000047362.11 ENSMUST00000121882.8 |
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| CDS-3UTR CCA 90 bp | GGACAGCATGTTGAAGCAGAGTTCTTTCTCACCCAGGCACATAAGTGGGGATCCGCCTCCAGAGTCCCGTaGCCCAGCTGTCCATGCCTG | + |
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Preference number: 4 (lower is better) Translates to: GQHVEAEFFLTQAHKWGSASRVP*PSCPCL Trigger: CAGGCATGGACAGCTGGGCCACGGGACTCTGGAGGC...GGATCCCCACTTATGTGCCTGGGTGAGAAAGAACTCTGCTTCAACATGCTGTCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000047362.11 ENSMUST00000121882.8 |
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| CDS-3UTR CCA 90 bp | GGACAGCATGTTGAAGCAGAGTTCTTTCTCACCCAGGCACATAAGTGGGGATCCCTGTCCCACTCCTTGTaGGCAGGGCCAGCTGCCCTG | + |
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Preference number: 4 (lower is better) Translates to: GQHVEAEFFLTQAHKWGSLSHSL*AGPAAL Trigger: CAGGGCAGCTGGCCCTGCCCACAAGGAGTGGGACAG...GGATCCCCACTTATGTGCCTGGGTGAGAAAGAACTCTGCTTCAACATGCTGTCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000047362.11 ENSMUST00000121882.8 |
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| CDS-3UTR GCA 90 bp | GGACAGCATGTTGAAGCAGAGTTCTTTCTCACCCAGGCACATAAGTGGGGATCCCCGCAGGCCCTGCAGTaGCTCCAACAGTCTTGGCTC | + |
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Preference number: 4 (lower is better) Translates to: GQHVEAEFFLTQAHKWGSPQALQ*LQQSWL Trigger: GAGCCAAGACTGTTGGAGGCACTGCAGGGCCTGCGG...GGATCCCCACTTATGTGCCTGGGTGAGAAAGAACTCTGCTTCAACATGCTGTCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000047362.11 ENSMUST00000121882.8 |
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| CDS-3UTR CCA 90 bp | CTGTTCCCTGTAGATGACAACCACATAGAGAGGCTGTCTGGTGGGCTGGGCCATAGGCTGGCAGAAGGGTaGTTCTGGGGTCACATAGGC | + |
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Preference number: 4 (lower is better) Translates to: LFPVDDNHIERLSGGLGHRLAEG*FWGHIG Trigger: GCCTATGTGACCCCAGAACCACCCTTCTGCCAGCCT...ATGGCCCAGCCCACCAGACAGCCTCTCTATGTGGTTGTCATCTACAGGGAACAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047362.11 |
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| CDS-3UTR CCA 90 bp | GGACAGCATGTTGAAGCAGAGTTCTTTCTCACCCAGGCACATAAGTGGGGATCCCCCCAGGAGAACACCTaGCCAGCTGCGCACAACAGC | + |
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Preference number: 4 (lower is better) Translates to: GQHVEAEFFLTQAHKWGSPQENT*PAAHNS Trigger: GCTGTTGTGCGCAGCTGGCCAGGTGTTCTCCTGGGG...GGATCCCCACTTATGTGCCTGGGTGAGAAAGAACTCTGCTTCAACATGCTGTCC 57% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000047362.11 ENSMUST00000121882.8 |
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| CDS-3UTR GCA 90 bp | GGACAGCATGTTGAAGCAGAGTTCTTTCTCACCCAGGCACATAAGTGGGGATCCGCCATCCGCAGGCCCTaGAGTGCCTCCAACAGTCTT | + |
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Preference number: 4 (lower is better) Translates to: GQHVEAEFFLTQAHKWGSAIRRP*SASNSL Trigger: AAGACTGTTGGAGGCACTGCAGGGCCTGCGGATGGC...GGATCCCCACTTATGTGCCTGGGTGAGAAAGAACTCTGCTTCAACATGCTGTCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000047362.11 ENSMUST00000121882.8 |
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| CDS-3UTR GCA 90 bp | CTGTTCCCTGTAGATGACAACCACATAGAGAGGCTGTCTGGTGGGCTGGGCCATTTCCCCTTGGCCCTTTaGCCCAGAAACCAAGTTCTG | + |
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Preference number: 4 (lower is better) Translates to: LFPVDDNHIERLSGGLGHFPLAL*PRNQVL Trigger: CAGAACTTGGTTTCTGGGGCAAAGGGCCAAGGGGAA...ATGGCCCAGCCCACCAGACAGCCTCTCTATGTGGTTGTCATCTACAGGGAACAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047362.11 |
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| CDS-3UTR GCA 90 bp | GGACAGCATGTTGAAGCAGAGTTCTTTCTCACCCAGGCACATAAGTGGGGATCCGAACACCTGGCCAGCTaGGCACAACAGCAGCACATG | + |
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Preference number: 4 (lower is better) Translates to: GQHVEAEFFLTQAHKWGSEHLAS*AQQQHM Trigger: CATGTGCTGCTGTTGTGCGCAGCTGGCCAGGTGTTC...GGATCCCCACTTATGTGCCTGGGTGAGAAAGAACTCTGCTTCAACATGCTGTCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000047362.11 ENSMUST00000121882.8 |
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| CDS-3UTR GCA 90 bp | GGACAGCATGTTGAAGCAGAGTTCTTTCTCACCCAGGCACATAAGTGGGGATCCCTCAAACACACAGAGTaGCAGCCACCTGCAGCCACC | + |
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Preference number: 4 (lower is better) Translates to: GQHVEAEFFLTQAHKWGSLKHTE*QPPAAT Trigger: GGTGGCTGCAGGTGGCTGGCACTCTGTGTGTTTGAG...GGATCCCCACTTATGTGCCTGGGTGAGAAAGAACTCTGCTTCAACATGCTGTCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000047362.11 ENSMUST00000121882.8 |
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| CDS-3UTR CCA 90 bp | GGACAGCATGTTGAAGCAGAGTTCTTTCTCACCCAGGCACATAAGTGGGGATCCAGGCTGGCAGAAGGGTaGTTCTGGGGTCACATAGGC | + |
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Preference number: 4 (lower is better) Translates to: GQHVEAEFFLTQAHKWGSRLAEG*FWGHIG Trigger: GCCTATGTGACCCCAGAACCACCCTTCTGCCAGCCT...GGATCCCCACTTATGTGCCTGGGTGAGAAAGAACTCTGCTTCAACATGCTGTCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000047362.11 ENSMUST00000121882.8 |
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| CDS-3UTR GCA 90 bp | GGACAGCATGTTGAAGCAGAGTTCTTTCTCACCCAGGCACATAAGTGGGGATCCGTCGATCCAAGCTGGTaGTGTCCTTGTGGCCAAGCT | + |
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Preference number: 4 (lower is better) Translates to: GQHVEAEFFLTQAHKWGSVDPSW*CPCGQA Trigger: AGCTTGGCCACAAGGACAGCACCAGCTTGGATCGAC...GGATCCCCACTTATGTGCCTGGGTGAGAAAGAACTCTGCTTCAACATGCTGTCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000047362.11 ENSMUST00000121882.8 |
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| CDS-3UTR CCA 90 bp | GGACAGCATGTTGAAGCAGAGTTCTTTCTCACCCAGGCACATAAGTGGGGATCCGGTTCATCTTCCCCTTaGCCCTTTGCCCCAGAAACC | + |
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Preference number: 4 (lower is better) Translates to: GQHVEAEFFLTQAHKWGSGSSSP*PFAPET Trigger: GGTTTCTGGGGCAAAGGGCCAAGGGGAAGATGAACC...GGATCCCCACTTATGTGCCTGGGTGAGAAAGAACTCTGCTTCAACATGCTGTCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000047362.11 ENSMUST00000121882.8 |
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| CDS-3UTR CCA 90 bp | CATCACTACTCTTCCCCAAAGCACTATATTTATTCTGTCTGTCTGTGCCAGTTCGCGGACCCGCAGCTCTaGGGCCAGAGGCTGGCAGAA | + |
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Preference number: 4 (lower is better) Translates to: HHYSSPKHYIYSVCLCQFADPQL*GQRLAE Trigger: TTCTGCCAGCCTCTGGCCCCAGAGCTGCGGGTCCGC...GAACTGGCACAGACAGACAGAATAAATATAGTGCTTTGGGGAAGAGTAGTGATG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047362.11 |
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| CDS-3UTR CCA 90 bp | GGACAGCATGTTGAAGCAGAGTTCTTTCTCACCCAGGCACATAAGTGGGGATCCAGGGTCGATCCAAGCTaGTGCTGTCCTTGTGGCCAA | + |
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Preference number: 4 (lower is better) Translates to: GQHVEAEFFLTQAHKWGSRVDPS*CCPCGQ Trigger: TTGGCCACAAGGACAGCACCAGCTTGGATCGACCCT...GGATCCCCACTTATGTGCCTGGGTGAGAAAGAACTCTGCTTCAACATGCTGTCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000047362.11 ENSMUST00000121882.8 |
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| 3UTR CAA 72 bp | GCTATTAAAGCCTCTGGGCTGGGTATAGCTAAGCTGTaGGTGCACGTGGAAGGCCTGGCACTACTCCAGAAA | + |
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Preference number: 4 (lower is better) Translates to: AIKASGLGIAKL*VHVEGLALLQK Trigger: TTTCTGGAGTAGTGCCAGGCCTTCCACGTGCACCAACAGCTTAGCTATACCCAGCCCAGAGGCTTTAATAGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047362.11 |
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| CDS-3UTR GCA 90 bp | AACCACATAGAGAGGCTGTCTGGTGGGCTGGGCCATTCCTGTCATGGAGTCAGCATATCATCACTGGCATaGAGTGGTTCAGGACTGTAC | + |
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Preference number: 4 (lower is better) Translates to: NHIERLSGGLGHSCHGVSISSLA*SGSGLY Trigger: GTACAGTCCTGAACCACTGCATGCCAGTGATGATAT...GCTGACTCCATGACAGGAATGGCCCAGCCCACCAGACAGCCTCTCTATGTGGTT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047362.11 |
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| CDS-3UTR GCA 90 bp | GGACAGCATGTTGAAGCAGAGTTCTTTCTCACCCAGGCACATAAGTGGGGATCCTTCCCCTTGGCCCTTTaGCCCAGAAACCAAGTTCTG | + |
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Preference number: 4 (lower is better) Translates to: GQHVEAEFFLTQAHKWGSFPLAL*PRNQVL Trigger: CAGAACTTGGTTTCTGGGGCAAAGGGCCAAGGGGAA...GGATCCCCACTTATGTGCCTGGGTGAGAAAGAACTCTGCTTCAACATGCTGTCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000047362.11 ENSMUST00000121882.8 |
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| CDS-3UTR GCA 90 bp | GGAGTCAGCAACTTTGCACATCTACAAGTTATCTGTGTAATCACGTCCACAATGGTGGGCAGGGCCAGCTaGCCTGACTCATTCCAGCCC | + |
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Preference number: 4 (lower is better) Translates to: GVSNFAHLQVICVITSTMVGRAS*PDSFQP Trigger: GGGCTGGAATGAGTCAGGGCAGCTGGCCCTGCCCAC...CATTGTGGACGTGATTACACAGATAACTTGTAGATGTGCAAAGTTGCTGACTCC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047362.11 |
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| CDS-3UTR CCA 90 bp | GGACAGCATGTTGAAGCAGAGTTCTTTCTCACCCAGGCACATAAGTGGGGATCCCTGTACACTGAATGGTaGCTGTTCCCAGAACCCAGC | + |
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Preference number: 4 (lower is better) Translates to: GQHVEAEFFLTQAHKWGSLYTEW*LFPEPS Trigger: GCTGGGTTCTGGGAACAGCCACCATTCAGTGTACAG...GGATCCCCACTTATGTGCCTGGGTGAGAAAGAACTCTGCTTCAACATGCTGTCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000047362.11 ENSMUST00000121882.8 |
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| CDS-3UTR CCA 90 bp | GGACAGCATGTTGAAGCAGAGTTCTTTCTCACCCAGGCACATAAGTGGGGATCCGGACTGTACACTGAATaGTGGCTGTTCCCAGAACCC | + |
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Preference number: 4 (lower is better) Translates to: GQHVEAEFFLTQAHKWGSGLYTE*WLFPEP Trigger: GGGTTCTGGGAACAGCCACCATTCAGTGTACAGTCC...GGATCCCCACTTATGTGCCTGGGTGAGAAAGAACTCTGCTTCAACATGCTGTCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000047362.11 ENSMUST00000121882.8 |
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| CDS-3UTR CCA 90 bp | TATATGTGTGAACACACATGCTTGTCTGACCTGTTGAGTTTTTCTCCAGTCTCCGCCTCCAGAGTCCCGTaGCCCAGCTGTCCATGCCTG | + |
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Preference number: 4 (lower is better) Translates to: YMCEHTCLSDLLSFSPVSASRVP*PSCPCL Trigger: CAGGCATGGACAGCTGGGCCACGGGACTCTGGAGGC...GGAGACTGGAGAAAAACTCAACAGGTCAGACAAGCATGTGTGTTCACACATATA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000047362.11 |
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| CDS-3UTR CCA 90 bp | GGACAGCATGTTGAAGCAGAGTTCTTTCTCACCCAGGCACATAAGTGGGGATCCTGGATGGCTATGAAGTaGGCAGGAGCTCCTGCATCA | + |
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Preference number: 4 (lower is better) Translates to: GQHVEAEFFLTQAHKWGSWMAMK*AGAPAS Trigger: TGATGCAGGAGCTCCTGCCCACTTCATAGCCATCCA...GGATCCCCACTTATGTGCCTGGGTGAGAAAGAACTCTGCTTCAACATGCTGTCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000047362.11 ENSMUST00000121882.8 |
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| CDS-3UTR TCA 90 bp | GGACAGCATGTTGAAGCAGAGTTCTTTCTCACCCAGGCACATAAGTGGGGATCCTTCAGGACTGTACACTaGATGGTGGCTGTTCCCAGA | + |
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Preference number: 4 (lower is better) Translates to: GQHVEAEFFLTQAHKWGSFRTVH*MVAVPR Trigger: TCTGGGAACAGCCACCATTCAGTGTACAGTCCTGAA...GGATCCCCACTTATGTGCCTGGGTGAGAAAGAACTCTGCTTCAACATGCTGTCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000047362.11 ENSMUST00000121882.8 |
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| CDS-3UTR CCA 90 bp | CATCACTACTCTTCCCCAAAGCACTATATTTATTCTGTCTGTCTGTGCCAGTTCCCCCAGGAGAACACCTaGCCAGCTGCGCACAACAGC | + |
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Preference number: 4 (lower is better) Translates to: HHYSSPKHYIYSVCLCQFPQENT*PAAHNS Trigger: GCTGTTGTGCGCAGCTGGCCAGGTGTTCTCCTGGGG...GAACTGGCACAGACAGACAGAATAAATATAGTGCTTTGGGGAAGAGTAGTGATG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000047362.11 |
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| CDS-3UTR CCA 90 bp | GGACAGCATGTTGAAGCAGAGTTCTTTCTCACCCAGGCACATAAGTGGGGATCCCTGGTGCTGTCCTTGTaGCCAAGCTGTCCGTATTTA | + |
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Preference number: 4 (lower is better) Translates to: GQHVEAEFFLTQAHKWGSLVLSL*PSCPYL Trigger: TAAATACGGACAGCTTGGCCACAAGGACAGCACCAG...GGATCCCCACTTATGTGCCTGGGTGAGAAAGAACTCTGCTTCAACATGCTGTCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000047362.11 ENSMUST00000121882.8 |
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| CDS-3UTR TCA 90 bp | GGAGTCAGCAACTTTGCACATCTACAAGTTATCTGTGTAATCACGTCCACAATGAGGGCTGGATGGCTATaGAGTGGGCAGGAGCTCCTG | + |
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Preference number: 4 (lower is better) Translates to: GVSNFAHLQVICVITSTMRAGWL*SGQELL Trigger: CAGGAGCTCCTGCCCACTTCATAGCCATCCAGCCCT...CATTGTGGACGTGATTACACAGATAACTTGTAGATGTGCAAAGTTGCTGACTCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047362.11 |
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| CDS-3UTR CCA 90 bp | GGAGTCAGCAACTTTGCACATCTACAAGTTATCTGTGTAATCACGTCCACAATGCCAGAAACCAAGTTCTaGACCCAGAGGGGCTCCCCC | + |
|
Preference number: 4 (lower is better) Translates to: GVSNFAHLQVICVITSTMPETKF*TQRGSP Trigger: GGGGGAGCCCCTCTGGGTCCAGAACTTGGTTTCTGG...CATTGTGGACGTGATTACACAGATAACTTGTAGATGTGCAAAGTTGCTGACTCC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047362.11 |
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| CDS-3UTR CCA 90 bp | ATGAGATGGCCTGACCTGCTGCCAAAAAGAGTAGCAGTCATTTCTGTAGTGCAAAGGGTCGATCCAAGCTaGTGCTGTCCTTGTGGCCAA | + |
|
Preference number: 4 (lower is better) Translates to: MRWPDLLPKRVAVISVVQRVDPS*CCPCGQ Trigger: TTGGCCACAAGGACAGCACCAGCTTGGATCGACCCT...TTGCACTACAGAAATGACTGCTACTCTTTTTGGCAGCAGGTCAGGCCATCTCAT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000047362.11 |
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| CDS-3UTR GCA 90 bp | GGACAGCATGTTGAAGCAGAGTTCTTTCTCACCCAGGCACATAAGTGGGGATCCATATCATCACTGGCATaGAGTGGTTCAGGACTGTAC | + |
|
Preference number: 4 (lower is better) Translates to: GQHVEAEFFLTQAHKWGSISSLA*SGSGLY Trigger: GTACAGTCCTGAACCACTGCATGCCAGTGATGATAT...GGATCCCCACTTATGTGCCTGGGTGAGAAAGAACTCTGCTTCAACATGCTGTCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000047362.11 ENSMUST00000121882.8 |
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| CDS-3UTR GCA 90 bp | TTTTCTCATTTTGCAGCTATTAAAGCCTCTGGGCTGGGTATAGCTAAGCTGTTGCACAACAGCAGCACATaGTCAGCTCCCAGCTCCAGC | + |
|
Preference number: 4 (lower is better) Translates to: FSHFAAIKASGLGIAKLLHNSST*SAPSSS Trigger: GCTGGAGCTGGGAGCTGAGCATGTGCTGCTGTTGTG...CAACAGCTTAGCTATACCCAGCCCAGAGGCTTTAATAGCTGCAAAATGAGAAAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000047362.11 |
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| CDS-3UTR GCA 90 bp | CATCACTACTCTTCCCCAAAGCACTATATTTATTCTGTCTGTCTGTGCCAGTTCGAACACCTGGCCAGCTaGGCACAACAGCAGCACATG | + |
|
Preference number: 4 (lower is better) Translates to: HHYSSPKHYIYSVCLCQFEHLAS*AQQQHM Trigger: CATGTGCTGCTGTTGTGCGCAGCTGGCCAGGTGTTC...GAACTGGCACAGACAGACAGAATAAATATAGTGCTTTGGGGAAGAGTAGTGATG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047362.11 |
||
| CDS-3UTR GCA 90 bp | TATATGTGTGAACACACATGCTTGTCTGACCTGTTGAGTTTTTCTCCAGTCTCCCTCAAACACACAGAGTaGCAGCCACCTGCAGCCACC | + |
|
Preference number: 4 (lower is better) Translates to: YMCEHTCLSDLLSFSPVSLKHTE*QPPAAT Trigger: GGTGGCTGCAGGTGGCTGGCACTCTGTGTGTTTGAG...GGAGACTGGAGAAAAACTCAACAGGTCAGACAAGCATGTGTGTTCACACATATA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000047362.11 |
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| CDS-3UTR CCA 90 bp | ATGAGATGGCCTGACCTGCTGCCAAAAAGAGTAGCAGTCATTTCTGTAGTGCAAGGACTGTACACTGAATaGTGGCTGTTCCCAGAACCC | + |
|
Preference number: 4 (lower is better) Translates to: MRWPDLLPKRVAVISVVQGLYTE*WLFPEP Trigger: GGGTTCTGGGAACAGCCACCATTCAGTGTACAGTCC...TTGCACTACAGAAATGACTGCTACTCTTTTTGGCAGCAGGTCAGGCCATCTCAT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000047362.11 |
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| CDS-3UTR CCA 90 bp | ATGAGATGGCCTGACCTGCTGCCAAAAAGAGTAGCAGTCATTTCTGTAGTGCAATGGATGGCTATGAAGTaGGCAGGAGCTCCTGCATCA | + |
|
Preference number: 4 (lower is better) Translates to: MRWPDLLPKRVAVISVVQWMAMK*AGAPAS Trigger: TGATGCAGGAGCTCCTGCCCACTTCATAGCCATCCA...TTGCACTACAGAAATGACTGCTACTCTTTTTGGCAGCAGGTCAGGCCATCTCAT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000047362.11 |
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| CDS-3UTR TCA 90 bp | CTGTTCCCTGTAGATGACAACCACATAGAGAGGCTGTCTGGTGGGCTGGGCCATCAGCTAATTCCTCTTTaGGACCATCTTCATTCAATT | + |
|
Preference number: 4 (lower is better) Translates to: LFPVDDNHIERLSGGLGHQLIPL*DHLHSI Trigger: AATTGAATGAAGATGGTCTCAAAGAGGAATTAGCTG...ATGGCCCAGCCCACCAGACAGCCTCTCTATGTGGTTGTCATCTACAGGGAACAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047362.11 |
||
| CDS-3UTR GCA 90 bp | GGAGTCAGCAACTTTGCACATCTACAAGTTATCTGTGTAATCACGTCCACAATGGTCGATCCAAGCTGGTaGTGTCCTTGTGGCCAAGCT | + |
|
Preference number: 4 (lower is better) Translates to: GVSNFAHLQVICVITSTMVDPSW*CPCGQA Trigger: AGCTTGGCCACAAGGACAGCACCAGCTTGGATCGAC...CATTGTGGACGTGATTACACAGATAACTTGTAGATGTGCAAAGTTGCTGACTCC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047362.11 |
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| CDS-3UTR CCA 90 bp | CATCACTACTCTTCCCCAAAGCACTATATTTATTCTGTCTGTCTGTGCCAGTTCGGTTCATCTTCCCCTTaGCCCTTTGCCCCAGAAACC | + |
|
Preference number: 4 (lower is better) Translates to: HHYSSPKHYIYSVCLCQFGSSSP*PFAPET Trigger: GGTTTCTGGGGCAAAGGGCCAAGGGGAAGATGAACC...GAACTGGCACAGACAGACAGAATAAATATAGTGCTTTGGGGAAGAGTAGTGATG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000047362.11 |
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| CDS-3UTR CCA 90 bp | GGACAGCATGTTGAAGCAGAGTTCTTTCTCACCCAGGCACATAAGTGGGGATCCCTTCATTCAATTCTGTaGCTTCCTCTCTCTCTGCTT | + |
|
Preference number: 4 (lower is better) Translates to: GQHVEAEFFLTQAHKWGSLHSIL*LPLSLL Trigger: AAGCAGAGAGAGAGGAAGCCACAGAATTGAATGAAG...GGATCCCCACTTATGTGCCTGGGTGAGAAAGAACTCTGCTTCAACATGCTGTCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000047362.11 ENSMUST00000121882.8 |
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| CDS-3UTR CCA 90 bp | CATCACTACTCTTCCCCAAAGCACTATATTTATTCTGTCTGTCTGTGCCAGTTCCTGTACACTGAATGGTaGCTGTTCCCAGAACCCAGC | + |
|
Preference number: 4 (lower is better) Translates to: HHYSSPKHYIYSVCLCQFLYTEW*LFPEPS Trigger: GCTGGGTTCTGGGAACAGCCACCATTCAGTGTACAG...GAACTGGCACAGACAGACAGAATAAATATAGTGCTTTGGGGAAGAGTAGTGATG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047362.11 |
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| CDS-3UTR TCA 90 bp | CATCACTACTCTTCCCCAAAGCACTATATTTATTCTGTCTGTCTGTGCCAGTTCTTCAGGACTGTACACTaGATGGTGGCTGTTCCCAGA | + |
|
Preference number: 4 (lower is better) Translates to: HHYSSPKHYIYSVCLCQFFRTVH*MVAVPR Trigger: TCTGGGAACAGCCACCATTCAGTGTACAGTCCTGAA...GAACTGGCACAGACAGACAGAATAAATATAGTGCTTTGGGGAAGAGTAGTGATG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047362.11 |
||
| CDS-3UTR TCA 90 bp | GGACAGCATGTTGAAGCAGAGTTCTTTCTCACCCAGGCACATAAGTGGGGATCCCAGCTAATTCCTCTTTaGGACCATCTTCATTCAATT | + |
|
Preference number: 4 (lower is better) Translates to: GQHVEAEFFLTQAHKWGSQLIPL*DHLHSI Trigger: AATTGAATGAAGATGGTCTCAAAGAGGAATTAGCTG...GGATCCCCACTTATGTGCCTGGGTGAGAAAGAACTCTGCTTCAACATGCTGTCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000047362.11 ENSMUST00000121882.8 |
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| CDS-3UTR CCA 90 bp | ATGAGATGGCCTGACCTGCTGCCAAAAAGAGTAGCAGTCATTTCTGTAGTGCAACTTCATTCAATTCTGTaGCTTCCTCTCTCTCTGCTT | + |
|
Preference number: 4 (lower is better) Translates to: MRWPDLLPKRVAVISVVQLHSIL*LPLSLL Trigger: AAGCAGAGAGAGAGGAAGCCACAGAATTGAATGAAG...TTGCACTACAGAAATGACTGCTACTCTTTTTGGCAGCAGGTCAGGCCATCTCAT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000047362.11 |
||
| 3UTR CAA 72 bp | TGCAATTTCTTGAGGTATATGTGTGAACACACATGCTaGTCTGACCTGTTGAGTTTTTCTCCAGTCTCCCAA | + |
|
Preference number: 4 (lower is better) Translates to: CNFLRYMCEHTC*SDLLSFSPVSQ Trigger: TTGGGAGACTGGAGAAAAACTCAACAGGTCAGACAAGCATGTGTGTTCACACATATACCTCAAGAAATTGCA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000047362.11 |
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| CDS GCA 90 bp | CTTGGCTCTAGTTCTGCCTCCAGAGTCCCGTGGCCCAGCTGTCCATaGCTGCCCGCACCCCAGGAGAACACCTGGCCAGCTGCGCACAAC | + |
|
Preference number: 5 (lower is better) Translates to: LGSSSASRVPWPSCP*LPAPQENTWPAAHN Trigger: GTTGTGCGCAGCTGGCCAGGTGTTCTCCTGGGGTGCGGGCAGGCATGGACAGCTGGGCCACGGGACTCTGGAGGCAGAACTAGAGCCAAG 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000047362.11 ENSMUST00000121882.8 |
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| CDS GCA 90 bp | GCTCCCCCTGTAACGCAGAACCTGGTACCCAGGCCTGCACTTCCGTaGTGGAGCCGCCCTTGTTGCGTAGCAGCACCAGGAGTTCCTCCG | + |
|
Preference number: 5 (lower is better) Translates to: APPVTQNLVPRPALP*WSRPCCVAAPGVPP Trigger: CGGAGGAACTCCTGGTGCTGCTACGCAACAAGGGCGGCTCCAGCACGGAAGTGCAGGCCTGGGTACCAGGTTCTGCGTTACAGGGGGAGC 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000047362.11 ENSMUST00000121882.8 |
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| CDS CCA 90 bp | CCCCCTGTAACGCAGAACCTGGTACCCAGGCCTGCACTTCCGTGCTaGAGCCGCCCTTGTTGCGTAGCAGCACCAGGAGTTCCTCCGAAG | + |
|
Preference number: 5 (lower is better) Translates to: PPVTQNLVPRPALPC*SRPCCVAAPGVPPK Trigger: CTTCGGAGGAACTCCTGGTGCTGCTACGCAACAAGGGCGGCTCCAGCACGGAAGTGCAGGCCTGGGTACCAGGTTCTGCGTTACAGGGGG 63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000047362.11 ENSMUST00000121882.8 |
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| CDS TCA 90 bp | CACCACAGCTGTGTGTCGGGATCCGCAGCTGGCCATAACTGCATCTaGGCCCAGGGGAAGATCCAGAAGAGCAGGGAAGGGCTGGATGGC | + |
|
Preference number: 5 (lower is better) Translates to: HHSCVSGSAAGHNCI*AQGKIQKSREGLDG Trigger: GCCATCCAGCCCTTCCCTGCTCTTCTGGATCTTCCCCTGGGCTCAGATGCAGTTATGGCCAGCTGCGGATCCCGACACACAGCTGTGGTG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000047362.11 ENSMUST00000121882.8 |
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| CDS GCA 90 bp | ACAGAGTGCCAGCCACCTGCAGCCACCTTAGCCATCCGCAGGCCCTaGAGTGCCTCCAACAGTCTTGGCTCTAGTTCTGCCTCCAGAGTC | + |
|
Preference number: 5 (lower is better) Translates to: TECQPPAATLAIRRP*SASNSLGSSSASRV Trigger: GACTCTGGAGGCAGAACTAGAGCCAAGACTGTTGGAGGCACTGCAGGGCCTGCGGATGGCTAAGGTGGCTGCAGGTGGCTGGCACTCTGT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000047362.11 ENSMUST00000121882.8 |
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| CDS GCA 90 bp | TTCCACCCGGCCTCCACGGGTCACCAGGGCAGTGTAGCTCCAGCCTaGGCTCACTTGGCAAATATCATCACTGGCATGCAGTGGTTCAGG | + |
|
Preference number: 5 (lower is better) Translates to: FHPASTGHQGSVAPA*AHLANIITGMQWFR Trigger: CCTGAACCACTGCATGCCAGTGATGATATTTGCCAAGTGAGCGCAGGCTGGAGCTACACTGCCCTGGTGACCCGTGGAGGCCGGGTGGAA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000047362.11 ENSMUST00000121882.8 |
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| CDS GCA 90 bp | TCAGGACTGTACACTGAATGGTGGCTGTTCCCAGAACCCAGCGCTTaGCCGAAGCCACAGAAACCAAAGCCGAACCAGGCTCCGTGCCGT | + |
|
Preference number: 5 (lower is better) Translates to: SGLYTEWWLFPEPSA*PKPQKPKPNQAPCR Trigger: ACGGCACGGAGCCTGGTTCGGCTTTGGTTTCTGTGGCTTCGGGCAAGCGCTGGGTTCTGGGAACAGCCACCATTCAGTGTACAGTCCTGA 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000047362.11 ENSMUST00000121882.8 ENSMUST00000123189.2 |
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| CDS-3UTR CAA 90 bp | GGACAGCATGTTGAAGCAGAGTTCTTTCTCACCCAGGCACATAAGTGGGGATCCTCTCTGTCCCACTCCTaGTGGGCAGGGCCAGCTGCC | + |
|
Preference number: 5 (lower is better) Translates to: GQHVEAEFFLTQAHKWGSSLSHS*WAGPAA Trigger: GGCAGCTGGCCCTGCCCACAAGGAGTGGGACAGAGA...GGATCCCCACTTATGTGCCTGGGTGAGAAAGAACTCTGCTTCAACATGCTGTCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000047362.11 ENSMUST00000121882.8 |
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| CDS GCA 90 bp | ATAAATATCCCCCGTTTCACTCAAACACACAGAGTGCCAGCCACCTaGAGCCACCTTAGCCATCCGCAGGCCCTGCAGTGCCTCCAACAG | + |
|
Preference number: 5 (lower is better) Translates to: INIPRFTQTHRVPAT*SHLSHPQALQCLQQ Trigger: CTGTTGGAGGCACTGCAGGGCCTGCGGATGGCTAAGGTGGCTGCAGGTGGCTGGCACTCTGTGTGTTTGAGTGAAACGGGGGATATTTAT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000047362.11 ENSMUST00000121882.8 |
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| CDS-3UTR CAA 90 bp | AACCACATAGAGAGGCTGTCTGGTGGGCTGGGCCATTCCTGTCATGGAGTCAGCCTTCCCCTTGGCCCTTaGCCCCAGAAACCAAGTTCT | + |
|
Preference number: 5 (lower is better) Translates to: NHIERLSGGLGHSCHGVSLPLGP*PQKPSS Trigger: AGAACTTGGTTTCTGGGGCAAAGGGCCAAGGGGAAG...GCTGACTCCATGACAGGAATGGCCCAGCCCACCAGACAGCCTCTCTATGTGGTT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000047362.11 |
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| CDS GCA 90 bp | GTCTTTCTACAAAGTACTCCACACAGCAGGGTCGATCCAAGCTGGTaGTGTCCTTGTGGCCAAGCTGTCCGTATTTACCCCAGCCCCAGG | + |
|
Preference number: 5 (lower is better) Translates to: VFLQSTPHSRVDPSW*CPCGQAVRIYPSPR Trigger: CCTGGGGCTGGGGTAAATACGGACAGCTTGGCCACAAGGACAGCACCAGCTTGGATCGACCCTGCTGTGTGGAGTACTTTGTAGAAAGAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000047362.11 ENSMUST00000121882.8 |
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| CDS CCA 90 bp | GGGCAGTGTAGCTCCAGCCTGCGCTCACTTGGCAAATATCATCACTaGCATGCAGTGGTTCAGGACTGTACACTGAATGGTGGCTGTTCC | + |
|
Preference number: 5 (lower is better) Translates to: GQCSSSLRSLGKYHH*HAVVQDCTLNGGCS Trigger: GGAACAGCCACCATTCAGTGTACAGTCCTGAACCACTGCATGCCAGTGATGATATTTGCCAAGTGAGCGCAGGCTGGAGCTACACTGCCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000047362.11 ENSMUST00000121882.8 |
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| CDS CCA 90 bp | AGGGGAAGATCCAGAAGAGCAGGGAAGGGCTGGATGGCTATGAAGTaGGCAGGAGCTCCTGCATCAGCCACAGCTAATTCCTCTTTGAGA | + |
|
Preference number: 5 (lower is better) Translates to: RGRSRRAGKGWMAMK*AGAPASATANSSLR Trigger: TCTCAAAGAGGAATTAGCTGTGGCTGATGCAGGAGCTCCTGCCCACTTCATAGCCATCCAGCCCTTCCCTGCTCTTCTGGATCTTCCCCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000047362.11 ENSMUST00000121882.8 |
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| CDS CCA 90 bp | GTTGTCTTTCTACAAAGTACTCCACACAGCAGGGTCGATCCAAGCTaGTGCTGTCCTTGTGGCCAAGCTGTCCGTATTTACCCCAGCCCC | + |
|
Preference number: 5 (lower is better) Translates to: VVFLQSTPHSRVDPS*CCPCGQAVRIYPSP Trigger: GGGGCTGGGGTAAATACGGACAGCTTGGCCACAAGGACAGCACCAGCTTGGATCGACCCTGCTGTGTGGAGTACTTTGTAGAAAGACAAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000047362.11 ENSMUST00000121882.8 |
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| CDS-3UTR CAA 90 bp | GGACAGCATGTTGAAGCAGAGTTCTTTCTCACCCAGGCACATAAGTGGGGATCCGGGTTCATCTTCCCCTaGGCCCTTTGCCCCAGAAAC | + |
|
Preference number: 5 (lower is better) Translates to: GQHVEAEFFLTQAHKWGSGFIFP*ALCPRN Trigger: GTTTCTGGGGCAAAGGGCCAAGGGGAAGATGAACCC...GGATCCCCACTTATGTGCCTGGGTGAGAAAGAACTCTGCTTCAACATGCTGTCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000047362.11 ENSMUST00000121882.8 |
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| CDS TCA 90 bp | TTGGCAAATATCATCACTGGCATGCAGTGGTTCAGGACTGTACACTaGATGGTGGCTGTTCCCAGAACCCAGCGCTTGCCCGAAGCCACA | + |
|
Preference number: 5 (lower is better) Translates to: LANIITGMQWFRTVH*MVAVPRTQRLPEAT Trigger: TGTGGCTTCGGGCAAGCGCTGGGTTCTGGGAACAGCCACCATTCAGTGTACAGTCCTGAACCACTGCATGCCAGTGATGATATTTGCCAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000047362.11 ENSMUST00000121882.8 |
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| CDS TCA 90 bp | TGCTTTGTTCTCTGTCCCACTCCTTGTGGGCAGGGCCAGCTGCCCTaGCTCATTCCAGCCCCAGATATAAATATCCCCCGTTTCACTCAA | + |
|
Preference number: 5 (lower is better) Translates to: CFVLCPTPCGQGQLP*LIPAPDINIPRFTQ Trigger: TTGAGTGAAACGGGGGATATTTATATCTGGGGCTGGAATGAGTCAGGGCAGCTGGCCCTGCCCACAAGGAGTGGGACAGAGAACAAAGCA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000047362.11 ENSMUST00000121882.8 |
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| CDS-3UTR CAA 90 bp | GGACAGCATGTTGAAGCAGAGTTCTTTCTCACCCAGGCACATAAGTGGGGATCCCTTCCCCTTGGCCCTTaGCCCCAGAAACCAAGTTCT | + |
|
Preference number: 5 (lower is better) Translates to: GQHVEAEFFLTQAHKWGSLPLGP*PQKPSS Trigger: AGAACTTGGTTTCTGGGGCAAAGGGCCAAGGGGAAG...GGATCCCCACTTATGTGCCTGGGTGAGAAAGAACTCTGCTTCAACATGCTGTCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000047362.11 ENSMUST00000121882.8 |
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| CDS-3UTR CAA 90 bp | GGACAGCATGTTGAAGCAGAGTTCTTTCTCACCCAGGCACATAAGTGGGGATCCAAGCTGGTGCTGTCCTaGTGGCCAAGCTGTCCGTAT | + |
|
Preference number: 5 (lower is better) Translates to: GQHVEAEFFLTQAHKWGSKLVLS*WPSCPY Trigger: ATACGGACAGCTTGGCCACAAGGACAGCACCAGCTT...GGATCCCCACTTATGTGCCTGGGTGAGAAAGAACTCTGCTTCAACATGCTGTCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000047362.11 ENSMUST00000121882.8 |
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| CDS CCA 90 bp | CAAATATCATCACTGGCATGCAGTGGTTCAGGACTGTACACTGAATaGTGGCTGTTCCCAGAACCCAGCGCTTGCCCGAAGCCACAGAAA | + |
|
Preference number: 5 (lower is better) Translates to: QISSLACSGSGLYTE*WLFPEPSACPKPQK Trigger: TTTCTGTGGCTTCGGGCAAGCGCTGGGTTCTGGGAACAGCCACCATTCAGTGTACAGTCCTGAACCACTGCATGCCAGTGATGATATTTG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000047362.11 ENSMUST00000121882.8 |
||
| CDS-3UTR CAA 90 bp | CATCACTACTCTTCCCCAAAGCACTATATTTATTCTGTCTGTCTGTGCCAGTTCTCTCTGTCCCACTCCTaGTGGGCAGGGCCAGCTGCC | + |
|
Preference number: 5 (lower is better) Translates to: HHYSSPKHYIYSVCLCQFSLSHS*WAGPAA Trigger: GGCAGCTGGCCCTGCCCACAAGGAGTGGGACAGAGA...GAACTGGCACAGACAGACAGAATAAATATAGTGCTTTGGGGAAGAGTAGTGATG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047362.11 |
||
| CDS-3UTR CAA 90 bp | GGACAGCATGTTGAAGCAGAGTTCTTTCTCACCCAGGCACATAAGTGGGGATCCTCCTCTCTCTCTGCTTaGTTCTCTGTCCCACTCCTT | + |
|
Preference number: 5 (lower is better) Translates to: GQHVEAEFFLTQAHKWGSSSLSA*FSVPLL Trigger: AAGGAGTGGGACAGAGAACAAAGCAGAGAGAGAGGA...GGATCCCCACTTATGTGCCTGGGTGAGAAAGAACTCTGCTTCAACATGCTGTCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000047362.11 ENSMUST00000121882.8 |
||
| CDS-3UTR CAA 90 bp | ATGAGATGGCCTGACCTGCTGCCAAAAAGAGTAGCAGTCATTTCTGTAGTGCAAGTGCCTCCAACAGTCTaGGCTCTAGTTCTGCCTCCA | + |
|
Preference number: 5 (lower is better) Translates to: MRWPDLLPKRVAVISVVQVPPTV*ALVLPP Trigger: TGGAGGCAGAACTAGAGCCAAGACTGTTGGAGGCAC...TTGCACTACAGAAATGACTGCTACTCTTTTTGGCAGCAGGTCAGGCCATCTCAT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000047362.11 |
||
| CDS-3UTR CAA 90 bp | GGAGTCAGCAACTTTGCACATCTACAAGTTATCTGTGTAATCACGTCCACAATGGGGTTCATCTTCCCCTaGGCCCTTTGCCCCAGAAAC | + |
|
Preference number: 5 (lower is better) Translates to: GVSNFAHLQVICVITSTMGFIFP*ALCPRN Trigger: GTTTCTGGGGCAAAGGGCCAAGGGGAAGATGAACCC...CATTGTGGACGTGATTACACAGATAACTTGTAGATGTGCAAAGTTGCTGACTCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000047362.11 |
||
| CDS-3UTR CAA 90 bp | AACCACATAGAGAGGCTGTCTGGTGGGCTGGGCCATTCCTGTCATGGAGTCAGCACAGCTAATTCCTCTTaGAGACCATCTTCATTCAAT | + |
|
Preference number: 5 (lower is better) Translates to: NHIERLSGGLGHSCHGVSTANSS*RPSSFN Trigger: ATTGAATGAAGATGGTCTCAAAGAGGAATTAGCTGT...GCTGACTCCATGACAGGAATGGCCCAGCCCACCAGACAGCCTCTCTATGTGGTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047362.11 |
||
| CDS-3UTR CAA 90 bp | CTGTTCCCTGTAGATGACAACCACATAGAGAGGCTGTCTGGTGGGCTGGGCCATAGCCCTTACTTCAAGTaGTCTTTCTACAAAGTACTC | + |
|
Preference number: 5 (lower is better) Translates to: LFPVDDNHIERLSGGLGHSPYFK*SFYKVL Trigger: GAGTACTTTGTAGAAAGACAACTTGAAGTAAGGGCT...ATGGCCCAGCCCACCAGACAGCCTCTCTATGTGGTTGTCATCTACAGGGAACAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047362.11 |
||
| CDS-3UTR CAA 90 bp | AACCACATAGAGAGGCTGTCTGGTGGGCTGGGCCATTCCTGTCATGGAGTCAGCTTTTGTCTCTTTCCATaGCATAGACATAGGTATTCC | + |
|
Preference number: 5 (lower is better) Translates to: NHIERLSGGLGHSCHGVSFCLFP*HRHRYS Trigger: GGAATACCTATGTCTATGCAATGGAAAGAGACAAAA...GCTGACTCCATGACAGGAATGGCCCAGCCCACCAGACAGCCTCTCTATGTGGTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047362.11 |
||
| CDS-3UTR CAA 90 bp | GGAGTCAGCAACTTTGCACATCTACAAGTTATCTGTGTAATCACGTCCACAATGAAGCTGGTGCTGTCCTaGTGGCCAAGCTGTCCGTAT | + |
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Preference number: 5 (lower is better) Translates to: GVSNFAHLQVICVITSTMKLVLS*WPSCPY Trigger: ATACGGACAGCTTGGCCACAAGGACAGCACCAGCTT...CATTGTGGACGTGATTACACAGATAACTTGTAGATGTGCAAAGTTGCTGACTCC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047362.11 |
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| CDS-3UTR CAA 90 bp | GGACAGCATGTTGAAGCAGAGTTCTTTCTCACCCAGGCACATAAGTGGGGATCCAGCCCTTACTTCAAGTaGTCTTTCTACAAAGTACTC | + |
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Preference number: 5 (lower is better) Translates to: GQHVEAEFFLTQAHKWGSSPYFK*SFYKVL Trigger: GAGTACTTTGTAGAAAGACAACTTGAAGTAAGGGCT...GGATCCCCACTTATGTGCCTGGGTGAGAAAGAACTCTGCTTCAACATGCTGTCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000047362.11 ENSMUST00000121882.8 |
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| CDS-3UTR CAA 90 bp | TTTTCTCATTTTGCAGCTATTAAAGCCTCTGGGCTGGGTATAGCTAAGCTGTTGTCCTCTCTCTCTGCTTaGTTCTCTGTCCCACTCCTT | + |
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Preference number: 5 (lower is better) Translates to: FSHFAAIKASGLGIAKLLSSLSA*FSVPLL Trigger: AAGGAGTGGGACAGAGAACAAAGCAGAGAGAGAGGA...CAACAGCTTAGCTATACCCAGCCCAGAGGCTTTAATAGCTGCAAAATGAGAAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000047362.11 |
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| CDS-3UTR CAA 90 bp | GGACAGCATGTTGAAGCAGAGTTCTTTCTCACCCAGGCACATAAGTGGGGATCCACAGCTAATTCCTCTTaGAGACCATCTTCATTCAAT | + |
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Preference number: 5 (lower is better) Translates to: GQHVEAEFFLTQAHKWGSTANSS*RPSSFN Trigger: ATTGAATGAAGATGGTCTCAAAGAGGAATTAGCTGT...GGATCCCCACTTATGTGCCTGGGTGAGAAAGAACTCTGCTTCAACATGCTGTCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000047362.11 ENSMUST00000121882.8 |
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| CDS-3UTR CAA 90 bp | GGACAGCATGTTGAAGCAGAGTTCTTTCTCACCCAGGCACATAAGTGGGGATCCTTTTGTCTCTTTCCATaGCATAGACATAGGTATTCC | + |
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Preference number: 5 (lower is better) Translates to: GQHVEAEFFLTQAHKWGSFCLFP*HRHRYS Trigger: GGAATACCTATGTCTATGCAATGGAAAGAGACAAAA...GGATCCCCACTTATGTGCCTGGGTGAGAAAGAACTCTGCTTCAACATGCTGTCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000047362.11 ENSMUST00000121882.8 |
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| CDS CAA 72 bp | ACCCAGGCCTGCACTTCCGTGCTGGAGCCGCCCTTGTaGCGTAGCAGCACCAGGAGTTCCTCCGAAGCCCAC | + |
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Preference number: 6 (lower is better) Translates to: TQACTSVLEPPL*RSSTRSSSEAH Trigger: GTGGGCTTCGGAGGAACTCCTGGTGCTGCTACGCAACAAGGGCGGCTCCAGCACGGAAGTGCAGGCCTGGGT 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000047362.11 ENSMUST00000121882.8 |
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| CDS CAA 72 bp | GGTACCCAGGCCTGCACTTCCGTGCTGGAGCCGCCCTaGTTGCGTAGCAGCACCAGGAGTTCCTCCGAAGCC | + |
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Preference number: 6 (lower is better) Translates to: GTQACTSVLEPP*LRSSTRSSSEA Trigger: GGCTTCGGAGGAACTCCTGGTGCTGCTACGCAACAAGGGCGGCTCCAGCACGGAAGTGCAGGCCTGGGTACC 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000047362.11 ENSMUST00000121882.8 |
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| CDS CAA 90 bp | GAACCTGGTACCCAGGCCTGCACTTCCGTGCTGGAGCCGCCCTTGTaGCGTAGCAGCACCAGGAGTTCCTCCGAAGCCCACACGTCCCTG | + |
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Preference number: 6 (lower is better) Translates to: EPGTQACTSVLEPPL*RSSTRSSSEAHTSL Trigger: CAGGGACGTGTGGGCTTCGGAGGAACTCCTGGTGCTGCTACGCAACAAGGGCGGCTCCAGCACGGAAGTGCAGGCCTGGGTACCAGGTTC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000047362.11 ENSMUST00000121882.8 |
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| CDS GCA 72 bp | CAGCCACCTGCAGCCACCTTAGCCATCCGCAGGCCCTaGAGTGCCTCCAACAGTCTTGGCTCTAGTTCTGCC | + |
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Preference number: 6 (lower is better) Translates to: QPPAATLAIRRP*SASNSLGSSSA Trigger: GGCAGAACTAGAGCCAAGACTGTTGGAGGCACTGCAGGGCCTGCGGATGGCTAAGGTGGCTGCAGGTGGCTG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000047362.11 ENSMUST00000121882.8 |
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| CDS TCA 72 bp | TGTGTGTCGGGATCCGCAGCTGGCCATAACTGCATCTaGGCCCAGGGGAAGATCCAGAAGAGCAGGGAAGGG | + |
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Preference number: 6 (lower is better) Translates to: CVSGSAAGHNCI*AQGKIQKSREG Trigger: CCCTTCCCTGCTCTTCTGGATCTTCCCCTGGGCTCAGATGCAGTTATGGCCAGCTGCGGATCCCGACACACA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000047362.11 ENSMUST00000121882.8 |
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| CDS GCA 72 bp | AGACTCCCTGCTGGGTTCATCTTCCCCTTGGCCCTTTaGCCCAGAAACCAAGTTCTGGACCCAGAGGGGCTC | + |
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Preference number: 6 (lower is better) Translates to: RLPAGFIFPLAL*PRNQVLDPEGL Trigger: GAGCCCCTCTGGGTCCAGAACTTGGTTTCTGGGGCAAAGGGCCAAGGGGAAGATGAACCCAGCAGGGAGTCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000047362.11 ENSMUST00000121882.8 |
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| CDS TCA 72 bp | CTCTGTCCCACTCCTTGTGGGCAGGGCCAGCTGCCCTaGCTCATTCCAGCCCCAGATATAAATATCCCCCGT | + |
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Preference number: 6 (lower is better) Translates to: LCPTPCGQGQLP*LIPAPDINIPR Trigger: ACGGGGGATATTTATATCTGGGGCTGGAATGAGTCAGGGCAGCTGGCCCTGCCCACAAGGAGTGGGACAGAG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000047362.11 ENSMUST00000121882.8 |
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| CDS CCA 72 bp | ACACAGCAGGGTCGATCCAAGCTGGTGCTGTCCTTGTaGCCAAGCTGTCCGTATTTACCCCAGCCCCAGGTA | + |
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Preference number: 6 (lower is better) Translates to: TQQGRSKLVLSL*PSCPYLPQPQV Trigger: TACCTGGGGCTGGGGTAAATACGGACAGCTTGGCCACAAGGACAGCACCAGCTTGGATCGACCCTGCTGTGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000047362.11 ENSMUST00000121882.8 |
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| CDS CCA 72 bp | TCACTGGCATGCAGTGGTTCAGGACTGTACACTGAATaGTGGCTGTTCCCAGAACCCAGCGCTTGCCCGAAG | + |
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Preference number: 6 (lower is better) Translates to: SLACSGSGLYTE*WLFPEPSACPK Trigger: CTTCGGGCAAGCGCTGGGTTCTGGGAACAGCCACCATTCAGTGTACAGTCCTGAACCACTGCATGCCAGTGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000047362.11 ENSMUST00000121882.8 |
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| CDS TCA 72 bp | ATCATCACTGGCATGCAGTGGTTCAGGACTGTACACTaGATGGTGGCTGTTCCCAGAACCCAGCGCTTGCCC | + |
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Preference number: 6 (lower is better) Translates to: IITGMQWFRTVH*MVAVPRTQRLP Trigger: GGGCAAGCGCTGGGTTCTGGGAACAGCCACCATTCAGTGTACAGTCCTGAACCACTGCATGCCAGTGATGAT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000047362.11 ENSMUST00000121882.8 |
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| CDS GCA 72 bp | CAAAGTACTCCACACAGCAGGGTCGATCCAAGCTGGTaGTGTCCTTGTGGCCAAGCTGTCCGTATTTACCCC | + |
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Preference number: 6 (lower is better) Translates to: QSTPHSRVDPSW*CPCGQAVRIYP Trigger: GGGGTAAATACGGACAGCTTGGCCACAAGGACAGCACCAGCTTGGATCGACCCTGCTGTGTGGAGTACTTTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000047362.11 ENSMUST00000121882.8 |
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| CDS CCA 72 bp | CTACAAAGTACTCCACACAGCAGGGTCGATCCAAGCTaGTGCTGTCCTTGTGGCCAAGCTGTCCGTATTTAC | + |
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Preference number: 6 (lower is better) Translates to: LQSTPHSRVDPS*CCPCGQAVRIY Trigger: GTAAATACGGACAGCTTGGCCACAAGGACAGCACCAGCTTGGATCGACCCTGCTGTGTGGAGTACTTTGTAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000047362.11 ENSMUST00000121882.8 |
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| CDS CCA 72 bp | AGCTCCAGCCTGCGCTCACTTGGCAAATATCATCACTaGCATGCAGTGGTTCAGGACTGTACACTGAATGGT | + |
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Preference number: 6 (lower is better) Translates to: SSSLRSLGKYHH*HAVVQDCTLNG Trigger: ACCATTCAGTGTACAGTCCTGAACCACTGCATGCCAGTGATGATATTTGCCAAGTGAGCGCAGGCTGGAGCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000047362.11 ENSMUST00000121882.8 |
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| CDS TCA 72 bp | CAGGAGCTCCTGCATCAGCCACAGCTAATTCCTCTTTaGGACCATCTTCATTCAATTCTGTGGCTTCCTCTC | + |
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Preference number: 6 (lower is better) Translates to: QELLHQPQLIPL*DHLHSILWLPL Trigger: GAGAGGAAGCCACAGAATTGAATGAAGATGGTCTCAAAGAGGAATTAGCTGTGGCTGATGCAGGAGCTCCTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000047362.11 ENSMUST00000121882.8 |
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| CDS CAA 72 bp | GCAGGAGCTCCTGCATCAGCCACAGCTAATTCCTCTTaGAGACCATCTTCATTCAATTCTGTGGCTTCCTCT | + |
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Preference number: 6 (lower is better) Translates to: AGAPASATANSS*RPSSFNSVASS Trigger: AGAGGAAGCCACAGAATTGAATGAAGATGGTCTCAAAGAGGAATTAGCTGTGGCTGATGCAGGAGCTCCTGC 49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000047362.11 ENSMUST00000121882.8 |
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| CDS CAA 90 bp | GACATAGGTATTCCAGGGTCCACATGTCACAGCCCTTACTTCAAGTaGTCTTTCTACAAAGTACTCCACACAGCAGGGTCGATCCAAGCT | + |
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Preference number: 6 (lower is better) Translates to: DIGIPGSTCHSPYFK*SFYKVLHTAGSIQA Trigger: AGCTTGGATCGACCCTGCTGTGTGGAGTACTTTGTAGAAAGACAACTTGAAGTAAGGGCTGTGACATGTGGACCCTGGAATACCTATGTC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000047362.11 ENSMUST00000121882.8 |
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