Pregenerated sensors for RCC1L (Mus musculus)
Ensembl gene IDs: ENSMUSG00000061979Ensembl transcript IDs: ENSMUST00000076228.3
Found 104 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GGCCCTCTCCCAGTACCCTCAGAAGCTCTGCTGGTGGCCACCCCCTaGCTCTGCCAAGCTGCTGCTGTGGTGTGGCTCCCAGGCTGGGCC | + |
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Preference number: 1 (lower is better) Translates to: GPLPVPSEALLVATP*LCQAAAVVWLPGWA Trigger: GGCCCAGCCTGGGAGCCACACCACAGCAGCAGCTTGGCAGAGGCAGGGGGTGGCCACCAGCAGAGCTTCTGAGGGTACTGGGAGAGGGCC 69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000076228.3 |
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| 3UTR GCA 90 bp | CTCCCAGTACCCTCAGAAGCTCTGCTGGTGGCCACCCCCTGCCTCTaGCAAGCTGCTGCTGTGGTGTGGCTCCCAGGCTGGGCCCAGAGG | + |
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Preference number: 1 (lower is better) Translates to: LPVPSEALLVATPCL*QAAAVVWLPGWAQR Trigger: CCTCTGGGCCCAGCCTGGGAGCCACACCACAGCAGCAGCTTGGCAGAGGCAGGGGGTGGCCACCAGCAGAGCTTCTGAGGGTACTGGGAG 68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000076228.3 |
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| 3UTR CCA 90 bp | CCAGAGGCCCTGGCCCTCTCCCAGTACCCTCAGAAGCTCTGCTGGTaGCCACCCCCTGCCTCTGCCAAGCTGCTGCTGTGGTGTGGCTCC | + |
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Preference number: 1 (lower is better) Translates to: PEALALSQYPQKLCW*PPPASAKLLLWCGS Trigger: GGAGCCACACCACAGCAGCAGCTTGGCAGAGGCAGGGGGTGGCCACCAGCAGAGCTTCTGAGGGTACTGGGAGAGGGCCAGGGCCTCTGG 68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000076228.3 |
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| 3UTR TCA 90 bp | AGGCATCCTGGGCTCCTGGACTGTCCTTCTGCGGGACTCCTGGGATaGCAGCTGACCAGAGGCCCTAGCTGCAGGCAGTCAGCTGGCTTC | + |
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Preference number: 1 (lower is better) Translates to: RHPGLLDCPSAGLLG*QLTRGPSCRQSAGF Trigger: GAAGCCAGCTGACTGCCTGCAGCTAGGGCCTCTGGTCAGCTGTCATCCCAGGAGTCCCGCAGAAGGACAGTCCAGGAGCCCAGGATGCCT 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000076228.3 |
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| 3UTR CCA 90 bp | GGCTTCTGGGCTGTTCAAAGCCAGGCAGTGAGGAAGTTCCAAGGCTaGGATACTGTAGGCCTGAGCGGGAGGCTGGCTCCCACTGGCAGC | + |
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Preference number: 1 (lower is better) Translates to: GFWAVQSQAVRKFQG*DTVGLSGRLAPTGS Trigger: GCTGCCAGTGGGAGCCAGCCTCCCGCTCAGGCCTACAGTATCCCAGCCTTGGAACTTCCTCACTGCCTGGCTTTGAACAGCCCAGAAGCC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000076228.3 |
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| 3UTR CCA 90 bp | CCAGCCCTTCAGCCAAGATTCCACGGCCCTCAGCCCACAAGCACTTaGCCCGCAGAGTCTTTCTTCAGGGGCTTCTGGGCTGTTCAAAGC | + |
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Preference number: 1 (lower is better) Translates to: PALQPRFHGPQPTST*PAESFFRGFWAVQS Trigger: GCTTTGAACAGCCCAGAAGCCCCTGAAGAAAGACTCTGCGGGCCAAGTGCTTGTGGGCTGAGGGCCGTGGAATCTTGGCTGAAGGGCTGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076228.3 |
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| 3UTR GCA 90 bp | AGACACATCCCCAGATGCTACCATGTGTTACCTGGAAAAGGAATCTaGCTGGCCACCCAAGGTCTTCACGCCCTGGTGCTCCTCAGAAAC | + |
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Preference number: 1 (lower is better) Translates to: RHIPRCYHVLPGKGI*LATQGLHALVLLRN Trigger: GTTTCTGAGGAGCACCAGGGCGTGAAGACCTTGGGTGGCCAGGCAGATTCCTTTTCCAGGTAACACATGGTAGCATCTGGGGATGTGTCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000076228.3 |
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| 3UTR-3UTR CCA 90 bp | CAAGCCAAGGCATCCTGGGCTCCTGGACTGTCCTTCTGCGGGACTCCTGGGATGGCCAAGCTGCTGCTGTaGTGTGGCTCCCAGGCTGGG | + |
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Preference number: 2 (lower is better) Translates to: QAKASWAPGLSFCGTPGMAKLLL*CGSQAG Trigger: CCCAGCCTGGGAGCCACACCACAGCAGCAGCTTGGC...CATCCCAGGAGTCCCGCAGAAGGACAGTCCAGGAGCCCAGGATGCCTTGGCTTG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000076228.3 |
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| 3UTR-3UTR TCA 90 bp | CAAGGCCAGCCCTTCAGCCAAGATTCCACGGCCCTCAGCCCACAAGCACTTGGCTCCTGGGATGACAGCTaGCCAGAGGCCCTAGCTGCA | + |
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Preference number: 2 (lower is better) Translates to: QGQPFSQDSTALSPQALGSWDDS*PEALAA Trigger: TGCAGCTAGGGCCTCTGGTCAGCTGTCATCCCAGGA...GCCAAGTGCTTGTGGGCTGAGGGCCGTGGAATCTTGGCTGAAGGGCTGGCCTTG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000076228.3 |
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| 3UTR-3UTR GCA 90 bp | AGTAGAATGTCCCCACTGAGGACACACAGCAAGCATCCTGCACCCCAGAGGCCCGCCACCCCCTGCCTCTaGCAAGCTGCTGCTGTGGTG | + |
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Preference number: 2 (lower is better) Translates to: SRMSPLRTHSKHPAPQRPATPCL*QAAAVV Trigger: CACCACAGCAGCAGCTTGGCAGAGGCAGGGGGTGGC...GGGCCTCTGGGGTGCAGGATGCTTGCTGTGTGTCCTCAGTGGGGACATTCTACT 62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000076228.3 |
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| 3UTR-3UTR TCA 90 bp | CCAGCCCTTCAGCCAAGATTCCACGGCCCTCAGCCCACAAGCACTTGGCCCGCATTCAAAGCCAGGCAGTaGGGAAGTTCCAAGGCTGGG | + |
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Preference number: 2 (lower is better) Translates to: PALQPRFHGPQPTSTWPAFKARQ*GSSKAG Trigger: CCCAGCCTTGGAACTTCCTCACTGCCTGGCTTTGAA...TGCGGGCCAAGTGCTTGTGGGCTGAGGGCCGTGGAATCTTGGCTGAAGGGCTGG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000076228.3 |
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| 3UTR-3UTR CCA 90 bp | AGTAGAATGTCCCCACTGAGGACACACAGCAAGCATCCTGCACCCCAGAGGCCCCCTCAGAAGCTCTGCTaGTGGCCACCCCCTGCCTCT | + |
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Preference number: 2 (lower is better) Translates to: SRMSPLRTHSKHPAPQRPPQKLC*WPPPAS Trigger: AGAGGCAGGGGGTGGCCACCAGCAGAGCTTCTGAGG...GGGCCTCTGGGGTGCAGGATGCTTGCTGTGTGTCCTCAGTGGGGACATTCTACT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 1 transcripts: ENSMUST00000076228.3 |
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| 3UTR CAA 90 bp | GCCAGCCCTTCAGCCAAGATTCCACGGCCCTCAGCCCACAAGCACTaGGCCCGCAGAGTCTTTCTTCAGGGGCTTCTGGGCTGTTCAAAG | + |
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Preference number: 2 (lower is better) Translates to: ASPSAKIPRPSAHKH*ARRVFLQGLLGCSK Trigger: CTTTGAACAGCCCAGAAGCCCCTGAAGAAAGACTCTGCGGGCCAAGTGCTTGTGGGCTGAGGGCCGTGGAATCTTGGCTGAAGGGCTGGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076228.3 |
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| 3UTR-3UTR CCA 90 bp | GCAGTCAGCTGGCTTCTTGCTGAGCTGAGGCCAACTTTATCCTCCTGTGACAGGCAGAAGCTCTGCTGGTaGCCACCCCCTGCCTCTGCC | + |
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Preference number: 2 (lower is better) Translates to: AVSWLLAELRPTLSSCDRQKLCW*PPPASA Trigger: GGCAGAGGCAGGGGGTGGCCACCAGCAGAGCTTCTG...CCTGTCACAGGAGGATAAAGTTGGCCTCAGCTCAGCAAGAAGCCAGCTGACTGC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000076228.3 |
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| 3UTR-3UTR GCA 90 bp | GTTCAAAGCCAGGCAGTGAGGAAGTTCCAAGGCTGGGATACTGTAGGCCTGAGCCCTCTGCCAAGCTGCTaGTGTGGTGTGGCTCCCAGG | + |
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Preference number: 2 (lower is better) Translates to: VQSQAVRKFQGWDTVGLSPLPSC*CGVAPR Trigger: CCTGGGAGCCACACCACAGCAGCAGCTTGGCAGAGG...GCTCAGGCCTACAGTATCCCAGCCTTGGAACTTCCTCACTGCCTGGCTTTGAAC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000076228.3 |
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| 3UTR-3UTR GCA 90 bp | CACAAGCACTTGGCCCGCAGAGTCTTTCTTCAGGGGCTTCTGGGCTGTTCAAAGCTGCCTCTGCCAAGCTaGTGCTGTGGTGTGGCTCCC | + |
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Preference number: 2 (lower is better) Translates to: HKHLARRVFLQGLLGCSKLPLPS*CCGVAP Trigger: GGGAGCCACACCACAGCAGCAGCTTGGCAGAGGCAG...CTTTGAACAGCCCAGAAGCCCCTGAAGAAAGACTCTGCGGGCCAAGTGCTTGTG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076228.3 |
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| 3UTR-3UTR GCA 90 bp | ACATCCCCAGATGCTACCATGTGTTACCTGGAAAAGGAATCTGCCTGGCCACCCCTGGTGGCCACCCCCTaGCTCTGCCAAGCTGCTGCT | + |
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Preference number: 2 (lower is better) Translates to: TSPDATMCYLEKESAWPPLVATP*LCQAAA Trigger: AGCAGCAGCTTGGCAGAGGCAGGGGGTGGCCACCAG...GGGTGGCCAGGCAGATTCCTTTTCCAGGTAACACATGGTAGCATCTGGGGATGT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000076228.3 |
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| 3UTR-3UTR CCA 90 bp | CAAGACACATCCCCAGATGCTACCATGTGTTACCTGGAAAAGGAATCTGCCTGGGCTGCTGCTGTGGTGTaGCTCCCAGGCTGGGCCCAG | + |
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Preference number: 2 (lower is better) Translates to: QDTSPDATMCYLEKESAWAAAVV*LPGWAQ Trigger: CTGGGCCCAGCCTGGGAGCCACACCACAGCAGCAGC...CCAGGCAGATTCCTTTTCCAGGTAACACATGGTAGCATCTGGGGATGTGTCTTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000076228.3 |
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| 3UTR-3UTR TCA 90 bp | TCCCTAAAAACAAGTATTTCCCAGTTTCTGAGGCCTCCTACTCCAAGGCCAGCCGTAGCCATCCTGAGCTaGGGCCAGCAGCAGGAACCT | + |
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Preference number: 2 (lower is better) Translates to: SLKTSISQFLRPPTPRPAVAILS*GQQQEP Trigger: AGGTTCCTGCTGCTGGCCTCAGCTCAGGATGGCTAC...GGCTGGCCTTGGAGTAGGAGGCCTCAGAAACTGGGAAATACTTGTTTTTAGGGA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000076228.3 |
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| 3UTR-3UTR CCA 90 bp | GTTCAAAGCCAGGCAGTGAGGAAGTTCCAAGGCTGGGATACTGTAGGCCTGAGCCTACCATGTGTTACCTaGAAAAGGAATCTGCCTGGC | + |
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Preference number: 2 (lower is better) Translates to: VQSQAVRKFQGWDTVGLSLPCVT*KRNLPG Trigger: GCCAGGCAGATTCCTTTTCCAGGTAACACATGGTAG...GCTCAGGCCTACAGTATCCCAGCCTTGGAACTTCCTCACTGCCTGGCTTTGAAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076228.3 |
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| 3UTR-3UTR GCA 90 bp | TCCCTAAAAACAAGTATTTCCCAGTTTCTGAGGCCTCCTACTCCAAGGCCAGCCACAAGTTCTTCTGAGTaGCTTGTCATGTCTCTAAAC | + |
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Preference number: 2 (lower is better) Translates to: SLKTSISQFLRPPTPRPATSSSE*LVMSLN Trigger: GTTTAGAGACATGACAAGGCACTCAGAAGAACTTGT...GGCTGGCCTTGGAGTAGGAGGCCTCAGAAACTGGGAAATACTTGTTTTTAGGGA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000076228.3 |
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| 3UTR GCA 72 bp | CCAGTACCCTCAGAAGCTCTGCTGGTGGCCACCCCCTaGCTCTGCCAAGCTGCTGCTGTGGTGTGGCTCCCA | + |
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Preference number: 3 (lower is better) Translates to: PVPSEALLVATP*LCQAAAVVWLP Trigger: TGGGAGCCACACCACAGCAGCAGCTTGGCAGAGGCAGGGGGTGGCCACCAGCAGAGCTTCTGAGGGTACTGG 65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000076228.3 |
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| 3UTR TCA 72 bp | GGGCTCCTGGACTGTCCTTCTGCGGGACTCCTGGGATaGCAGCTGACCAGAGGCCCTAGCTGCAGGCAGTCA | + |
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Preference number: 3 (lower is better) Translates to: GLLDCPSAGLLG*QLTRGPSCRQS Trigger: TGACTGCCTGCAGCTAGGGCCTCTGGTCAGCTGTCATCCCAGGAGTCCCGCAGAAGGACAGTCCAGGAGCCC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000076228.3 |
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| 3UTR TCA 72 bp | TGGACTGTCCTTCTGCGGGACTCCTGGGATGACAGCTaGCCAGAGGCCCTAGCTGCAGGCAGTCAGCTGGCT | + |
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Preference number: 3 (lower is better) Translates to: WTVLLRDSWDDS*PEALAAGSQLA Trigger: AGCCAGCTGACTGCCTGCAGCTAGGGCCTCTGGTCAGCTGTCATCCCAGGAGTCCCGCAGAAGGACAGTCCA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000076228.3 |
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| 3UTR CCA 72 bp | CAGCCAAGATTCCACGGCCCTCAGCCCACAAGCACTTaGCCCGCAGAGTCTTTCTTCAGGGGCTTCTGGGCT | + |
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Preference number: 3 (lower is better) Translates to: QPRFHGPQPTST*PAESFFRGFWA Trigger: AGCCCAGAAGCCCCTGAAGAAAGACTCTGCGGGCCAAGTGCTTGTGGGCTGAGGGCCGTGGAATCTTGGCTG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076228.3 |
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| 3UTR TCA 72 bp | GGCTTTGTCCACACACCTCTAGTAGAATGTCCCCACTaGGGACACACAGCAAGCATCCTGCACCCCAGAGGC | + |
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Preference number: 3 (lower is better) Translates to: GFVHTPLVECPH*GHTASILHPRG Trigger: GCCTCTGGGGTGCAGGATGCTTGCTGTGTGTCCTCAGTGGGGACATTCTACTAGAGGTGTGTGGACAAAGCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000076228.3 |
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| 3UTR CCA 72 bp | GATGCTACCATGTGTTACCTGGAAAAGGAATCTGCCTaGCCACCCAAGGTCTTCACGCCCTGGTGCTCCTCA | + |
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Preference number: 3 (lower is better) Translates to: DATMCYLEKESA*PPKVFTPWCSS Trigger: TGAGGAGCACCAGGGCGTGAAGACCTTGGGTGGCCAGGCAGATTCCTTTTCCAGGTAACACATGGTAGCATC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076228.3 |
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| 3UTR CCA 72 bp | GACAAGACACATCCCCAGATGCTACCATGTGTTACCTaGAAAAGGAATCTGCCTGGCCACCCAAGGTCTTCA | + |
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Preference number: 3 (lower is better) Translates to: DKTHPQMLPCVT*KRNLPGHPRSS Trigger: TGAAGACCTTGGGTGGCCAGGCAGATTCCTTTTCCAGGTAACACATGGTAGCATCTGGGGATGTGTCTTGTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000076228.3 |
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| CDS-3UTR TCA 90 bp | CTCAAGCCAAGGCATCCTGGGCTCCTGGACTGTCCTTCTGCGGGACTCCTGGGAGCGCCCCGGAGAAGCTaGAGCCCCAGACGAAGACGC | + |
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Preference number: 4 (lower is better) Translates to: LKPRHPGLLDCPSAGLLGAPRRS*SPRRRR Trigger: GCGTCTTCGTCTGGGGCTTCAGCTTCTCCGGGGCGC...TCCCAGGAGTCCCGCAGAAGGACAGTCCAGGAGCCCAGGATGCCTTGGCTTGAG 66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000076228.3 |
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| CDS-3UTR CCA 90 bp | CACACAGCAAGCATCCTGCACCCCAGAGGCCCTGGCCCTCTCCCAGTACCCTCAAGCAGTCACCGTAGGTaGCGACCTGGACAACGGTCA | + |
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Preference number: 4 (lower is better) Translates to: HTASILHPRGPGPLPVPSSSHRR*RPGQRS Trigger: TGACCGTTGTCCAGGTCGCCACCTACGGTGACTGCT...TGAGGGTACTGGGAGAGGGCCAGGGCCTCTGGGGTGCAGGATGCTTGCTGTGTG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076228.3 |
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| CDS-3UTR TCA 90 bp | CTCAAGCCAAGGCATCCTGGGCTCCTGGACTGTCCTTCTGCGGGACTCCTGGGATGCTGGGTGTGCTGGTaGTGTTGTAGTGACCCAGGC | + |
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Preference number: 4 (lower is better) Translates to: LKPRHPGLLDCPSAGLLGCWVCW*CCSDPG Trigger: GCCTGGGTCACTACAACATCACCAGCACACCCAGCA...TCCCAGGAGTCCCGCAGAAGGACAGTCCAGGAGCCCAGGATGCCTTGGCTTGAG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000076228.3 |
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| CDS-3UTR CCA 90 bp | CCAGCCCTTCAGCCAAGATTCCACGGCCCTCAGCCCACAAGCACTTGGCCCGCACTCCATGGGAAGTACTaGTCTTCCAGGCGGCCAATC | + |
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Preference number: 4 (lower is better) Translates to: PALQPRFHGPQPTSTWPALHGKY*SSRRPI Trigger: GATTGGCCGCCTGGAAGACCAGTACTTCCCATGGAG...TGCGGGCCAAGTGCTTGTGGGCTGAGGGCCGTGGAATCTTGGCTGAAGGGCTGG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000076228.3 |
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| 3UTR CAA 72 bp | TCAGCCAAGATTCCACGGCCCTCAGCCCACAAGCACTaGGCCCGCAGAGTCTTTCTTCAGGGGCTTCTGGGC | + |
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Preference number: 4 (lower is better) Translates to: SAKIPRPSAHKH*ARRVFLQGLLG Trigger: GCCCAGAAGCCCCTGAAGAAAGACTCTGCGGGCCAAGTGCTTGTGGGCTGAGGGCCGTGGAATCTTGGCTGA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076228.3 |
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| CDS-3UTR TCA 90 bp | CATCCCCAGATGCTACCATGTGTTACCTGGAAAAGGAATCTGCCTGGCCACCCACGCTCGCCCACGTACTaGAACACCGGAACGTCCGCC | + |
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Preference number: 4 (lower is better) Translates to: HPQMLPCVTWKRNLPGHPRSPTY*NTGTSA Trigger: GGCGGACGTTCCGGTGTTTCAGTACGTGGGCGAGCG...TGGGTGGCCAGGCAGATTCCTTTTCCAGGTAACACATGGTAGCATCTGGGGATG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000076228.3 |
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| CDS-3UTR GCA 90 bp | CTCAAGCCAAGGCATCCTGGGCTCCTGGACTGTCCTTCTGCGGGACTCCTGGGAGTGACAGAGGCCAACTaGAGGTACTCGGAATTTCCC | + |
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Preference number: 4 (lower is better) Translates to: LKPRHPGLLDCPSAGLLGVTEAN*RYSEFP Trigger: GGGAAATTCCGAGTACCTGCAGTTGGCCTCTGTCAC...TCCCAGGAGTCCCGCAGAAGGACAGTCCAGGAGCCCAGGATGCCTTGGCTTGAG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000076228.3 |
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| CDS-3UTR GCA 90 bp | CTCAAGCCAAGGCATCCTGGGCTCCTGGACTGTCCTTCTGCGGGACTCCTGGGACCACCTGCTTCACCTTaGCTACTCCAGAGAAAGGCA | + |
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Preference number: 4 (lower is better) Translates to: LKPRHPGLLDCPSAGLLGPPASP*LLQRKA Trigger: TGCCTTTCTCTGGAGTAGGCAAGGTGAAGCAGGTGG...TCCCAGGAGTCCCGCAGAAGGACAGTCCAGGAGCCCAGGATGCCTTGGCTTGAG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000076228.3 |
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| CDS-3UTR TCA 90 bp | GTTCAAAGCCAGGCAGTGAGGAAGTTCCAAGGCTGGGATACTGTAGGCCTGAGCAACACCTTTGTCTCCTaGGGTCTGTCCAGCGGCAGC | + |
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Preference number: 4 (lower is better) Translates to: VQSQAVRKFQGWDTVGLSNTFVS*GLSSGS Trigger: GCTGCCGCTGGACAGACCTCAGGAGACAAAGGTGTT...GCTCAGGCCTACAGTATCCCAGCCTTGGAACTTCCTCACTGCCTGGCTTTGAAC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000076228.3 |
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| CDS-3UTR TCA 90 bp | CTGAGGACACACAGCAAGCATCCTGCACCCCAGAGGCCCTGGCCCTCTCCCAGTATCCTGTGCACTTTGTaGCTCTCGCTGTATACTTCA | + |
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Preference number: 4 (lower is better) Translates to: LRTHSKHPAPQRPWPSPSILCTL*LSLYTS Trigger: TGAAGTATACAGCGAGAGTCACAAAGTGCACAGGAT...ACTGGGAGAGGGCCAGGGCCTCTGGGGTGCAGGATGCTTGCTGTGTGTCCTCAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076228.3 |
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| CDS-3UTR TCA 90 bp | CACAAGCACTTGGCCCGCAGAGTCTTTCTTCAGGGGCTTCTGGGCTGTTCAAAGCCTGTGTGGAGTCTGTaGCAGAGGCCAACTGCAGGT | + |
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Preference number: 4 (lower is better) Translates to: HKHLARRVFLQGLLGCSKPVWSL*QRPTAG Trigger: ACCTGCAGTTGGCCTCTGTCACAGACTCCACACAGG...CTTTGAACAGCCCAGAAGCCCCTGAAGAAAGACTCTGCGGGCCAAGTGCTTGTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076228.3 |
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| CDS-3UTR GCA 90 bp | TCTAGTAGAATGTCCCCACTGAGGACACACAGCAAGCATCCTGCACCCCAGAGGACCCTCGGATGTTCTTaGCCCACACGAACAGCTCAC | + |
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Preference number: 4 (lower is better) Translates to: SSRMSPLRTHSKHPAPQRTLGCS*PTRTAH Trigger: GTGAGCTGTTCGTGTGGGGCAAGAACATCCGAGGGT...CCTCTGGGGTGCAGGATGCTTGCTGTGTGTCCTCAGTGGGGACATTCTACTAGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000076228.3 |
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| CDS-3UTR CCA 90 bp | GTTCAAAGCCAGGCAGTGAGGAAGTTCCAAGGCTGGGATACTGTAGGCCTGAGCGTGAGTGCGGCAAAGTaGCTAAGCCCACATCGGATC | + |
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Preference number: 4 (lower is better) Translates to: VQSQAVRKFQGWDTVGLSVSAAK*LSPHRI Trigger: GATCCGATGTGGGCTTAGCCACTTTGCCGCACTCAC...GCTCAGGCCTACAGTATCCCAGCCTTGGAACTTCCTCACTGCCTGGCTTTGAAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000076228.3 |
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| CDS-3UTR TCA 90 bp | GCAGTCAGCTGGCTTCTTGCTGAGCTGAGGCCAACTTTATCCTCCTGTGACAGGGCTGGGAATCTTTGTTaGGTCCCATGCCCCAGACTT | + |
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Preference number: 4 (lower is better) Translates to: AVSWLLAELRPTLSSCDRAGNLC*VPCPRL Trigger: AAGTCTGGGGCATGGGACTCAACAAAGATTCCCAGC...CCTGTCACAGGAGGATAAAGTTGGCCTCAGCTCAGCAAGAAGCCAGCTGACTGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076228.3 |
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| CDS-3UTR TCA 90 bp | GACACATCCCCAGATGCTACCATGTGTTACCTGGAAAAGGAATCTGCCTGGCCAAACAGGCTGTGGTCCTaGCCACAGACAACCTGGACC | + |
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Preference number: 4 (lower is better) Translates to: DTSPDATMCYLEKESAWPNRLWS*PQTTWT Trigger: GGTCCAGGTTGTCTGTGGTCAGGACCACAGCCTGTT...TGGCCAGGCAGATTCCTTTTCCAGGTAACACATGGTAGCATCTGGGGATGTGTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000076228.3 |
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| CDS-3UTR GCA 90 bp | GACACATCCCCAGATGCTACCATGTGTTACCTGGAAAAGGAATCTGCCTGGCCAGTACAGCACAGCCTGTaGCACCACAAGCCACCTGCT | + |
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Preference number: 4 (lower is better) Translates to: DTSPDATMCYLEKESAWPVQHSL*HHKPPA Trigger: AGCAGGTGGCTTGTGGTGGCACAGGCTGTGCTGTAC...TGGCCAGGCAGATTCCTTTTCCAGGTAACACATGGTAGCATCTGGGGATGTGTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000076228.3 |
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| CDS-3UTR TCA 90 bp | CATCCCCAGATGCTACCATGTGTTACCTGGAAAAGGAATCTGCCTGGCCACCCACTTCACCTTTGTCTGTaGGGAACAGGCTGTGGTCCT | + |
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Preference number: 4 (lower is better) Translates to: HPQMLPCVTWKRNLPGHPLHLCL*GTGCGP Trigger: AGGACCACAGCCTGTTCCTCACAGACAAAGGTGAAG...TGGGTGGCCAGGCAGATTCCTTTTCCAGGTAACACATGGTAGCATCTGGGGATG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000076228.3 |
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| CDS-3UTR GCA 90 bp | CAAGCCAAGGCATCCTGGGCTCCTGGACTGTCCTTCTGCGGGACTCCTGGGATGAATCATTTCTGGAATTaGCGTTTCCAAGAGCTTTGG | + |
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Preference number: 4 (lower is better) Translates to: QAKASWAPGLSFCGTPGMNHFWN*RFQELW Trigger: CCAAAGCTCTTGGAAACGGCAATTCCAGAAATGATT...CATCCCAGGAGTCCCGCAGAAGGACAGTCCAGGAGCCCAGGATGCCTTGGCTTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000076228.3 |
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| CDS-3UTR CCA 90 bp | TCCCTAAAAACAAGTATTTCCCAGTTTCTGAGGCCTCCTACTCCAAGGCCAGCCTCCTTCCGGCTCCTGTaGAATCCCAGCTGGGAATCT | + |
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Preference number: 4 (lower is better) Translates to: SLKTSISQFLRPPTPRPASFRLL*NPSWES Trigger: AGATTCCCAGCTGGGATTCCACAGGAGCCGGAAGGA...GGCTGGCCTTGGAGTAGGAGGCCTCAGAAACTGGGAAATACTTGTTTTTAGGGA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000076228.3 |
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| CDS-3UTR CCA 90 bp | GACACATCCCCAGATGCTACCATGTGTTACCTGGAAAAGGAATCTGCCTGGCCACTGTGGAATCCCAGCTaGGAATCTTTGTTGAGTCCC | + |
|
Preference number: 4 (lower is better) Translates to: DTSPDATMCYLEKESAWPLWNPS*ESLLSP Trigger: GGGACTCAACAAAGATTCCCAGCTGGGATTCCACAG...TGGCCAGGCAGATTCCTTTTCCAGGTAACACATGGTAGCATCTGGGGATGTGTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000076228.3 |
||
| CDS-3UTR CCA 90 bp | TCTAGTAGAATGTCCCCACTGAGGACACACAGCAAGCATCCTGCACCCCAGAGGGGGTGGAATCATTTCTaGAATTGCCGTTTCCAAGAG | + |
|
Preference number: 4 (lower is better) Translates to: SSRMSPLRTHSKHPAPQRGWNHF*NCRFQE Trigger: CTCTTGGAAACGGCAATTCCAGAAATGATTCCACCC...CCTCTGGGGTGCAGGATGCTTGCTGTGTGTCCTCAGTGGGGACATTCTACTAGA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000076228.3 |
||
| CDS-3UTR CCA 90 bp | GTTCAAAGCCAGGCAGTGAGGAAGTTCCAAGGCTGGGATACTGTAGGCCTGAGCACCAAAGAGCGTGGGTaGAATCATTTCTGGAATTGC | + |
|
Preference number: 4 (lower is better) Translates to: VQSQAVRKFQGWDTVGLSTKERG*NHFWNC Trigger: GCAATTCCAGAAATGATTCCACCCACGCTCTTTGGT...GCTCAGGCCTACAGTATCCCAGCCTTGGAACTTCCTCACTGCCTGGCTTTGAAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000076228.3 |
||
| CDS-3UTR CCA 90 bp | GACACATCCCCAGATGCTACCATGTGTTACCTGGAAAAGGAATCTGCCTGGCCACGGATCTGGGAAACCTaGACTTCAGGGTTAAACTCC | + |
|
Preference number: 4 (lower is better) Translates to: DTSPDATMCYLEKESAWPRIWET*TSGLNS Trigger: GGAGTTTAACCCTGAAGTCCAGGTTTCCCAGATCCG...TGGCCAGGCAGATTCCTTTTCCAGGTAACACATGGTAGCATCTGGGGATGTGTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000076228.3 |
||
| CDS GCA 90 bp | TCGGCCGCTTCTCGCCGGCTCCGCGAACGGCCGGCCGGTGTCCAGTaGTCGCGAGCCGGTGTCGGCCACCTCGGCCGCGGCCCCCGCAGA | + |
|
Preference number: 5 (lower is better) Translates to: SAASRRLRERPAGVQ*SRAGVGHLGRGPRR Trigger: TCTGCGGGGGCCGCGGCCGAGGTGGCCGACACCGGCTCGCGAGCACTGGACACCGGCCGGCCGTTCGCGGAGCCGGCGAGAAGCGGCCGA 79% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000076228.3 |
||
| CDS TCA 90 bp | CAGACGAAGACGCGATCGGCGCGAGCCGCGCGCTCGCCCACGTACTaGAACACCGGAACGTCCGCCTCGGCCTCGGCCGCTTCTCGCCGG | + |
|
Preference number: 5 (lower is better) Translates to: QTKTRSARAARSPTY*NTGTSASASAASRR Trigger: CCGGCGAGAAGCGGCCGAGGCCGAGGCGGACGTTCCGGTGTTTCAGTACGTGGGCGAGCGCGCGGCTCGCGCCGATCGCGTCTTCGTCTG 72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000076228.3 |
||
| CDS-3UTR CAA 90 bp | CCAGAGGCCCTGGCCCTCTCCCAGTACCCTCAGAAGCTCTGCTGGTGGCCACCCAGGTCTCCGCCCAGCTaGCTGGGTGTGCTGGTGATG | + |
|
Preference number: 5 (lower is better) Translates to: PEALALSQYPQKLCWWPPRSPPS*LGVLVM Trigger: CATCACCAGCACACCCAGCAAGCTGGGCGGAGACCT...GGGTGGCCACCAGCAGAGCTTCTGAGGGTACTGGGAGAGGGCCAGGGCCTCTGG 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000076228.3 |
||
| CDS TCA 90 bp | CGGTCACCCCGGCAAGGTCTCCGCCCAGCTTGCTGGGTGTGCTGGTaGTGTTGTAGTGACCCAGGCCTGTCTGTCCATCGGCACCCCAGC | + |
|
Preference number: 5 (lower is better) Translates to: RSPRQGLRPACWVCW*CCSDPGLSVHRHPS Trigger: GCTGGGGTGCCGATGGACAGACAGGCCTGGGTCACTACAACATCACCAGCACACCCAGCAAGCTGGGCGGAGACCTTGCCGGGGTGACCG 66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000076228.3 |
||
| CDS CCA 90 bp | TCCACACGCCACATCCACAGGCTCACCGGGCATCGTCACCCTCCATaGGAAGTACTGGTCTTCCAGGCGGCCAATCCCCAAGCACCCTCG | + |
|
Preference number: 5 (lower is better) Translates to: STRHIHRLTGHRHPP*EVLVFQAANPQAPS Trigger: CGAGGGTGCTTGGGGATTGGCCGCCTGGAAGACCAGTACTTCCCATGGAGGGTGACGATGCCCGGTGAGCCTGTGGATGTGGCGTGTGGA 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076228.3 |
||
| CDS CCA 90 bp | AGACACCTCCATCAGCGGACAAAGCTAAGCAGCAGTCACCGTAGGTaGCGACCTGGACAACGGTCACCCCGGCAAGGTCTCCGCCCAGCT | + |
|
Preference number: 5 (lower is better) Translates to: RHLHQRTKLSSSHRR*RPGQRSPRQGLRPA Trigger: AGCTGGGCGGAGACCTTGCCGGGGTGACCGTTGTCCAGGTCGCCACCTACGGTGACTGCTGCTTAGCTTTGTCCGCTGATGGAGGTGTCT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076228.3 |
||
| CDS-3UTR CAA 90 bp | CTGAGGACACACAGCAAGCATCCTGCACCCCAGAGGCCCTGGCCCTCTCCCAGTCCCAGCTGGGAATCTTaGTTGAGTCCCATGCCCCAG | + |
|
Preference number: 5 (lower is better) Translates to: LRTHSKHPAPQRPWPSPSPSWES*LSPMPQ Trigger: CTGGGGCATGGGACTCAACAAAGATTCCCAGCTGGG...ACTGGGAGAGGGCCAGGGCCTCTGGGGTGCAGGATGCTTGCTGTGTGTCCTCAG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000076228.3 |
||
| CDS GCA 90 bp | TCAGTACAGCACAGCCTGTGCCACCACAAGCCACCTGCTTCACCTTaGCTACTCCAGAGAAAGGCAGGCACCGAGGGACATTCACCTGTG | + |
|
Preference number: 5 (lower is better) Translates to: SVQHSLCHHKPPASP*LLQRKAGTEGHSPV Trigger: CACAGGTGAATGTCCCTCGGTGCCTGCCTTTCTCTGGAGTAGGCAAGGTGAAGCAGGTGGCTTGTGGTGGCACAGGCTGTGCTGTACTGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000076228.3 |
||
| CDS GCA 90 bp | GCCCATGCTGAAGACACCTTCTCTGTCTGTCAGGACAAGGGAGTGTaGTCGACCGCAGGACACCTGCAACACCTTTGTCTCCTGAGGTCT | + |
|
Preference number: 5 (lower is better) Translates to: AHAEDTFSVCQDKGV*STAGHLQHLCLLRS Trigger: AGACCTCAGGAGACAAAGGTGTTGCAGGTGTCCTGCGGTCGAGCACACTCCCTTGTCCTGACAGACAGAGAAGGTGTCTTCAGCATGGGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000076228.3 |
||
| CDS GCA 90 bp | CACCGAGGGACATTCACCTGTGTGGAGTCTGTGACAGAGGCCAACTaGAGGTACTCGGAATTTCCCCAGCCAAAGACACCTCCATCAGCG | + |
|
Preference number: 5 (lower is better) Translates to: HRGTFTCVESVTEAN*RYSEFPQPKTPPSA Trigger: CGCTGATGGAGGTGTCTTTGGCTGGGGAAATTCCGAGTACCTGCAGTTGGCCTCTGTCACAGACTCCACACAGGTGAATGTCCCTCGGTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076228.3 |
||
| CDS-3UTR CAA 90 bp | CACAAGCACTTGGCCCGCAGAGTCTTTCTTCAGGGGCTTCTGGGCTGTTCAAAGCACCCTCGGATGTTCTaGCCCCACACGAACAGCTCA | + |
|
Preference number: 5 (lower is better) Translates to: HKHLARRVFLQGLLGCSKHPRMF*PHTNSS Trigger: TGAGCTGTTCGTGTGGGGCAAGAACATCCGAGGGTG...CTTTGAACAGCCCAGAAGCCCCTGAAGAAAGACTCTGCGGGCCAAGTGCTTGTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000076228.3 |
||
| CDS TCA 90 bp | GTCCATCGGCACCCCAGCCACAAGAATAGACTTCACCTTTGTCTGTaGGGAACAGGCTGTGGTCCTGACCACAGACAACCTGGACCACCT | + |
|
Preference number: 5 (lower is better) Translates to: VHRHPSHKNRLHLCL*GTGCGPDHRQPGPP Trigger: AGGTGGTCCAGGTTGTCTGTGGTCAGGACCACAGCCTGTTCCTCACAGACAAAGGTGAAGTCTATTCTTGTGGCTGGGGTGCCGATGGAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076228.3 |
||
| CDS TCA 90 bp | CAGAGAAAGGCAGGCACCGAGGGACATTCACCTGTGTGGAGTCTGTaGCAGAGGCCAACTGCAGGTACTCGGAATTTCCCCAGCCAAAGA | + |
|
Preference number: 5 (lower is better) Translates to: QRKAGTEGHSPVWSL*QRPTAGTRNFPSQR Trigger: TCTTTGGCTGGGGAAATTCCGAGTACCTGCAGTTGGCCTCTGTCACAGACTCCACACAGGTGAATGTCCCTCGGTGCCTGCCTTTCTCTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076228.3 |
||
| CDS CCA 90 bp | TCGCTGTATACTTCATCCTCCACCACCTTCCGGCCACACTGCCCGTaGGAATTGTTGCCCATGCTGAAGACACCTTCTCTGTCTGTCAGG | + |
|
Preference number: 5 (lower is better) Translates to: SLYTSSSTTFRPHCP*ELLPMLKTPSLSVR Trigger: CCTGACAGACAGAGAAGGTGTCTTCAGCATGGGCAACAATTCCCACGGGCAGTGTGGCCGGAAGGTGGTGGAGGATGAAGTATACAGCGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000076228.3 |
||
| CDS CCA 90 bp | TTGCCCCACACGAACAGCTCACCCTTGTTGGTGAGTGCGGCAAAGTaGCTAAGCCCACATCGGATCTGGGAAACCTGGACTTCAGGGTTA | + |
|
Preference number: 5 (lower is better) Translates to: LPHTNSSPLLVSAAK*LSPHRIWETWTSGL Trigger: TAACCCTGAAGTCCAGGTTTCCCAGATCCGATGTGGGCTTAGCCACTTTGCCGCACTCACCAACAAGGGTGAGCTGTTCGTGTGGGGCAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076228.3 |
||
| CDS CCA 90 bp | GTGAGTGCGGCAAAGTGGCTAAGCCCACATCGGATCTGGGAAACCTaGACTTCAGGGTTAAACTCCGTCAAACCAAAGAGCGTGGGTGGA | + |
|
Preference number: 5 (lower is better) Translates to: VSAAKWLSPHRIWET*TSGLNSVKPKSVGG Trigger: TCCACCCACGCTCTTTGGTTTGACGGAGTTTAACCCTGAAGTCCAGGTTTCCCAGATCCGATGTGGGCTTAGCCACTTTGCCGCACTCAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000076228.3 |
||
| CDS-3UTR CAA 90 bp | CACACAGCAAGCATCCTGCACCCCAGAGGCCCTGGCCCTCTCCCAGTACCCTCAACTTTTGTAACATCCTaGGTTTTCGAGGACAGCAAT | + |
|
Preference number: 5 (lower is better) Translates to: HTASILHPRGPGPLPVPSTFVTS*VFEDSN Trigger: ATTGCTGTCCTCGAAAACCAAGGATGTTACAAAAGT...TGAGGGTACTGGGAGAGGGCCAGGGCCTCTGGGGTGCAGGATGCTTGCTGTGTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000076228.3 |
||
| CDS CCA 90 bp | CCCTTGTTGGTGAGTGCGGCAAAGTGGCTAAGCCCACATCGGATCTaGGAAACCTGGACTTCAGGGTTAAACTCCGTCAAACCAAAGAGC | + |
|
Preference number: 5 (lower is better) Translates to: PLLVSAAKWLSPHRI*ETWTSGLNSVKPKS Trigger: GCTCTTTGGTTTGACGGAGTTTAACCCTGAAGTCCAGGTTTCCCAGATCCGATGTGGGCTTAGCCACTTTGCCGCACTCACCAACAAGGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000076228.3 |
||
| CDS-3UTR CAA 90 bp | GACACATCCCCAGATGCTACCATGTGTTACCTGGAAAAGGAATCTGCCTGGCCATGCCCGTGGGAATTGTaGCCCATGCTGAAGACACCT | + |
|
Preference number: 5 (lower is better) Translates to: DTSPDATMCYLEKESAWPCPWEL*PMLKTP Trigger: AGGTGTCTTCAGCATGGGCAACAATTCCCACGGGCA...TGGCCAGGCAGATTCCTTTTCCAGGTAACACATGGTAGCATCTGGGGATGTGTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000076228.3 |
||
| CDS-3UTR CAA 90 bp | TCCCTAAAAACAAGTATTTCCCAGTTTCTGAGGCCTCCTACTCCAAGGCCAGCCCACTGCCCGTGGGAATaGTTGCCCATGCTGAAGACA | + |
|
Preference number: 5 (lower is better) Translates to: SLKTSISQFLRPPTPRPAHCPWE*LPMLKT Trigger: TGTCTTCAGCATGGGCAACAATTCCCACGGGCAGTG...GGCTGGCCTTGGAGTAGGAGGCCTCAGAAACTGGGAAATACTTGTTTTTAGGGA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000076228.3 |
||
| CDS-3UTR CAA 90 bp | CAAGACACATCCCCAGATGCTACCATGTGTTACCTGGAAAAGGAATCTGCCTGGCCGTTTCCAAGAGCTTaGGTCCTTTCCCAAGAATTC | + |
|
Preference number: 5 (lower is better) Translates to: QDTSPDATMCYLEKESAWPFPRA*VLSQEF Trigger: GAATTCTTGGGAAAGGACCAAAGCTCTTGGAAACGG...CCAGGCAGATTCCTTTTCCAGGTAACACATGGTAGCATCTGGGGATGTGTCTTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000076228.3 |
||
| CDS GCA 90 bp | AAACTCCGTCAAACCAAAGAGCGTGGGTGGAATCATTTCTGGAATTaGCGTTTCCAAGAGCTTTGGTCCTTTCCCAAGAATTCCATAGCC | + |
|
Preference number: 5 (lower is better) Translates to: KLRQTKERGWNHFWN*RFQELWSFPKNSIA Trigger: GGCTATGGAATTCTTGGGAAAGGACCAAAGCTCTTGGAAACGGCAATTCCAGAAATGATTCCACCCACGCTCTTTGGTTTGACGGAGTTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000076228.3 |
||
| CDS CCA 90 bp | AGGGTTAAACTCCGTCAAACCAAAGAGCGTGGGTGGAATCATTTCTaGAATTGCCGTTTCCAAGAGCTTTGGTCCTTTCCCAAGAATTCC | + |
|
Preference number: 5 (lower is better) Translates to: RVKLRQTKERGWNHF*NCRFQELWSFPKNS Trigger: GGAATTCTTGGGAAAGGACCAAAGCTCTTGGAAACGGCAATTCCAGAAATGATTCCACCCACGCTCTTTGGTTTGACGGAGTTTAACCCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000076228.3 |
||
| CDS CCA 90 bp | AACCTGGACTTCAGGGTTAAACTCCGTCAAACCAAAGAGCGTGGGTaGAATCATTTCTGGAATTGCCGTTTCCAAGAGCTTTGGTCCTTT | + |
|
Preference number: 5 (lower is better) Translates to: NLDFRVKLRQTKERG*NHFWNCRFQELWSF Trigger: AAAGGACCAAAGCTCTTGGAAACGGCAATTCCAGAAATGATTCCACCCACGCTCTTTGGTTTGACGGAGTTTAACCCTGAAGTCCAGGTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000076228.3 |
||
| CDS GCA 72 bp | TCTCGCCGGCTCCGCGAACGGCCGGCCGGTGTCCAGTaGTCGCGAGCCGGTGTCGGCCACCTCGGCCGCGGC | + |
|
Preference number: 6 (lower is better) Translates to: SRRLRERPAGVQ*SRAGVGHLGRG Trigger: GCCGCGGCCGAGGTGGCCGACACCGGCTCGCGAGCACTGGACACCGGCCGGCCGTTCGCGGAGCCGGCGAGA 79% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000076228.3 |
||
| CDS GCA 72 bp | GATCCAGCTCCAGGCGGTAGGGGACCGGCTGGATCCTaGGTCGGGGCCGCAGGCCGGCGCGCGGTCCAGGCC | + |
|
Preference number: 6 (lower is better) Translates to: DPAPGGRGPAGS*VGAAGRRAVQA Trigger: GGCCTGGACCGCGCGCCGGCCTGCGGCCCCGACGCAGGATCCAGCCGGTCCCCTACCGCCTGGAGCTGGATC 78% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000076228.3 |
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| CDS TCA 72 bp | ACGCGATCGGCGCGAGCCGCGCGCTCGCCCACGTACTaGAACACCGGAACGTCCGCCTCGGCCTCGGCCGCT | + |
|
Preference number: 6 (lower is better) Translates to: TRSARAARSPTY*NTGTSASASAA Trigger: AGCGGCCGAGGCCGAGGCGGACGTTCCGGTGTTTCAGTACGTGGGCGAGCGCGCGGCTCGCGCCGATCGCGT 74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000076228.3 |
||
| CDS CCA 72 bp | GGCTCACCGGGCATCGTCACCCTCCATGGGAAGTACTaGTCTTCCAGGCGGCCAATCCCCAAGCACCCTCGG | + |
|
Preference number: 6 (lower is better) Translates to: GSPGIVTLHGKY*SSRRPIPKHPR Trigger: CCGAGGGTGCTTGGGGATTGGCCGCCTGGAAGACCAGTACTTCCCATGGAGGGTGACGATGCCCGGTGAGCC 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076228.3 |
||
| CDS CAA 72 bp | GGGAGTGTGCTCGACCGCAGGACACCTGCAACACCTTaGTCTCCTGAGGTCTGTCCAGCGGCAGCGGGACAG | + |
|
Preference number: 6 (lower is better) Translates to: GSVLDRRTPATP*SPEVCPAAAGQ Trigger: CTGTCCCGCTGCCGCTGGACAGACCTCAGGAGACAAAGGTGTTGCAGGTGTCCTGCGGTCGAGCACACTCCC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000076228.3 |
||
| CDS CCA 72 bp | CATCAGCGGACAAAGCTAAGCAGCAGTCACCGTAGGTaGCGACCTGGACAACGGTCACCCCGGCAAGGTCTC | + |
|
Preference number: 6 (lower is better) Translates to: HQRTKLSSSHRR*RPGQRSPRQGL Trigger: GAGACCTTGCCGGGGTGACCGTTGTCCAGGTCGCCACCTACGGTGACTGCTGCTTAGCTTTGTCCGCTGATG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076228.3 |
||
| CDS CCA 72 bp | CACATCCACAGGCTCACCGGGCATCGTCACCCTCCATaGGAAGTACTGGTCTTCCAGGCGGCCAATCCCCAA | + |
|
Preference number: 6 (lower is better) Translates to: HIHRLTGHRHPP*EVLVFQAANPQ Trigger: TTGGGGATTGGCCGCCTGGAAGACCAGTACTTCCCATGGAGGGTGACGATGCCCGGTGAGCCTGTGGATGTG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076228.3 |
||
| CDS CAA 72 bp | GCACAGCCTGTGCCACCACAAGCCACCTGCTTCACCTaGCCTACTCCAGAGAAAGGCAGGCACCGAGGGACA | + |
|
Preference number: 6 (lower is better) Translates to: AQPVPPQATCFT*PTPEKGRHRGT Trigger: TGTCCCTCGGTGCCTGCCTTTCTCTGGAGTAGGCAAGGTGAAGCAGGTGGCTTGTGGTGGCACAGGCTGTGC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000076228.3 |
||
| CDS GCA 72 bp | CACAGCCTGTGCCACCACAAGCCACCTGCTTCACCTTaGCTACTCCAGAGAAAGGCAGGCACCGAGGGACAT | + |
|
Preference number: 6 (lower is better) Translates to: HSLCHHKPPASP*LLQRKAGTEGH Trigger: ATGTCCCTCGGTGCCTGCCTTTCTCTGGAGTAGGCAAGGTGAAGCAGGTGGCTTGTGGTGGCACAGGCTGTG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000076228.3 |
||
| CDS CAA 90 bp | TACTGGTCTTCCAGGCGGCCAATCCCCAAGCACCCTCGGATGTTCTaGCCCCACACGAACAGCTCACCCTTGTTGGTGAGTGCGGCAAAG | + |
|
Preference number: 6 (lower is better) Translates to: YWSSRRPIPKHPRMF*PHTNSSPLLVSAAK Trigger: CTTTGCCGCACTCACCAACAAGGGTGAGCTGTTCGTGTGGGGCAAGAACATCCGAGGGTGCTTGGGGATTGGCCGCCTGGAAGACCAGTA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000076228.3 |
||
| CDS TCA 72 bp | GCAGGCACCGAGGGACATTCACCTGTGTGGAGTCTGTaGCAGAGGCCAACTGCAGGTACTCGGAATTTCCCC | + |
|
Preference number: 6 (lower is better) Translates to: AGTEGHSPVWSL*QRPTAGTRNFP Trigger: GGGGAAATTCCGAGTACCTGCAGTTGGCCTCTGTCACAGACTCCACACAGGTGAATGTCCCTCGGTGCCTGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000076228.3 |
||
| CDS CAA 72 bp | TCCACCACCTTCCGGCCACACTGCCCGTGGGAATTGTaGCCCATGCTGAAGACACCTTCTCTGTCTGTCAGG | + |
|
Preference number: 6 (lower is better) Translates to: STTFRPHCPWEL*PMLKTPSLSVR Trigger: CCTGACAGACAGAGAAGGTGTCTTCAGCATGGGCAACAATTCCCACGGGCAGTGTGGCCGGAAGGTGGTGGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000076228.3 |
||
| CDS CAA 90 bp | ACTTCATCCTCCACCACCTTCCGGCCACACTGCCCGTGGGAATTGTaGCCCATGCTGAAGACACCTTCTCTGTCTGTCAGGACAAGGGAG | + |
|
Preference number: 6 (lower is better) Translates to: TSSSTTFRPHCPWEL*PMLKTPSLSVRTRE Trigger: CTCCCTTGTCCTGACAGACAGAGAAGGTGTCTTCAGCATGGGCAACAATTCCCACGGGCAGTGTGGCCGGAAGGTGGTGGAGGATGAAGT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000076228.3 |
||
| CDS CAA 90 bp | TTCAGTACAGCACAGCCTGTGCCACCACAAGCCACCTGCTTCACCTaGCCTACTCCAGAGAAAGGCAGGCACCGAGGGACATTCACCTGT | + |
|
Preference number: 6 (lower is better) Translates to: FSTAQPVPPQATCFT*PTPEKGRHRGTFTC Trigger: ACAGGTGAATGTCCCTCGGTGCCTGCCTTTCTCTGGAGTAGGCAAGGTGAAGCAGGTGGCTTGTGGTGGCACAGGCTGTGCTGTACTGAA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000076228.3 |
||
| CDS GCA 72 bp | TTCAGTACAGCACAGCCTGTGCCACCACAAGCCACCTaGTTCACCTTGCCTACTCCAGAGAAAGGCAGGCAC | + |
|
Preference number: 6 (lower is better) Translates to: FSTAQPVPPQAT*FTLPTPEKGRH Trigger: GTGCCTGCCTTTCTCTGGAGTAGGCAAGGTGAAGCAGGTGGCTTGTGGTGGCACAGGCTGTGCTGTACTGAA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000076228.3 |
||
| CDS GCA 72 bp | AAACATGTCCCTCCGCGTTCAGTACAGCACAGCCTGTaGCACCACAAGCCACCTGCTTCACCTTGCCTACTC | + |
|
Preference number: 6 (lower is better) Translates to: KHVPPRSVQHSL*HHKPPASPCLL Trigger: GAGTAGGCAAGGTGAAGCAGGTGGCTTGTGGTGGCACAGGCTGTGCTGTACTGAACGCGGAGGGACATGTTT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000076228.3 |
||
| CDS GCA 72 bp | CTGTATACTTCATCCTCCACCACCTTCCGGCCACACTaGCCGTGGGAATTGTTGCCCATGCTGAAGACACCT | + |
|
Preference number: 6 (lower is better) Translates to: LYTSSSTTFRPH*PWELLPMLKTP Trigger: AGGTGTCTTCAGCATGGGCAACAATTCCCACGGGCAGTGTGGCCGGAAGGTGGTGGAGGATGAAGTATACAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000076228.3 |
||
| CDS CCA 72 bp | ACGAACAGCTCACCCTTGTTGGTGAGTGCGGCAAAGTaGCTAAGCCCACATCGGATCTGGGAAACCTGGACT | + |
|
Preference number: 6 (lower is better) Translates to: TNSSPLLVSAAK*LSPHRIWETWT Trigger: AGTCCAGGTTTCCCAGATCCGATGTGGGCTTAGCCACTTTGCCGCACTCACCAACAAGGGTGAGCTGTTCGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000076228.3 |
||
| CDS CAA 90 bp | TATACTTCATCCTCCACCACCTTCCGGCCACACTGCCCGTGGGAATaGTTGCCCATGCTGAAGACACCTTCTCTGTCTGTCAGGACAAGG | + |
|
Preference number: 6 (lower is better) Translates to: YTSSSTTFRPHCPWE*LPMLKTPSLSVRTR Trigger: CCTTGTCCTGACAGACAGAGAAGGTGTCTTCAGCATGGGCAACAATTCCCACGGGCAGTGTGGCCGGAAGGTGGTGGAGGATGAAGTATA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000076228.3 |
||
| CDS TCA 72 bp | ACTTCACCTTTGTCTGTGAGGAACAGGCTGTGGTCCTaGCCACAGACAACCTGGACCACCTGTCCATCGAAG | + |
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Preference number: 6 (lower is better) Translates to: TSPLSVRNRLWS*PQTTWTTCPSK Trigger: CTTCGATGGACAGGTGGTCCAGGTTGTCTGTGGTCAGGACCACAGCCTGTTCCTCACAGACAAAGGTGAAGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000076228.3 |
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| CDS GCA 72 bp | ACATTCACCTGTGTGGAGTCTGTGACAGAGGCCAACTaGAGGTACTCGGAATTTCCCCAGCCAAAGACACCT | + |
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Preference number: 6 (lower is better) Translates to: TFTCVESVTEAN*RYSEFPQPKTP Trigger: AGGTGTCTTTGGCTGGGGAAATTCCGAGTACCTGCAGTTGGCCTCTGTCACAGACTCCACACAGGTGAATGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076228.3 |
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| CDS CCA 72 bp | CTGGTTTTATCCTTCCGGCTCCTGTGGAATCCCAGCTaGGAATCTTTGTTGAGTCCCATGCCCCAGACTTTT | + |
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Preference number: 6 (lower is better) Translates to: LVLSFRLLWNPS*ESLLSPMPQTF Trigger: AAAAGTCTGGGGCATGGGACTCAACAAAGATTCCCAGCTGGGATTCCACAGGAGCCGGAAGGATAAAACCAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000076228.3 |
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| CDS CCA 72 bp | GCAAAGTGGCTAAGCCCACATCGGATCTGGGAAACCTaGACTTCAGGGTTAAACTCCGTCAAACCAAAGAGC | + |
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Preference number: 6 (lower is better) Translates to: AKWLSPHRIWET*TSGLNSVKPKS Trigger: GCTCTTTGGTTTGACGGAGTTTAACCCTGAAGTCCAGGTTTCCCAGATCCGATGTGGGCTTAGCCACTTTGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000076228.3 |
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| CDS CCA 72 bp | CTCCGTCAAACCAAAGAGCGTGGGTGGAATCATTTCTaGAATTGCCGTTTCCAAGAGCTTTGGTCCTTTCCC | + |
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Preference number: 6 (lower is better) Translates to: LRQTKERGWNHF*NCRFQELWSFP Trigger: GGGAAAGGACCAAAGCTCTTGGAAACGGCAATTCCAGAAATGATTCCACCCACGCTCTTTGGTTTGACGGAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000076228.3 |
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| CDS CAA 90 bp | AGAGCGTGGGTGGAATCATTTCTGGAATTGCCGTTTCCAAGAGCTTaGGTCCTTTCCCAAGAATTCCATAGCCCCAGACGAAAACATGTC | + |
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Preference number: 6 (lower is better) Translates to: RAWVESFLELPFPRA*VLSQEFHSPRRKHV Trigger: GACATGTTTTCGTCTGGGGCTATGGAATTCTTGGGAAAGGACCAAAGCTCTTGGAAACGGCAATTCCAGAAATGATTCCACCCACGCTCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000076228.3 |
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| CDS CAA 72 bp | GTGGAATCATTTCTGGAATTGCCGTTTCCAAGAGCTTaGGTCCTTTCCCAAGAATTCCATAGCCCCAGACGA | + |
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Preference number: 6 (lower is better) Translates to: VESFLELPFPRA*VLSQEFHSPRR Trigger: TCGTCTGGGGCTATGGAATTCTTGGGAAAGGACCAAAGCTCTTGGAAACGGCAATTCCAGAAATGATTCCAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076228.3 |
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| CDS GCA 72 bp | CAAACCAAAGAGCGTGGGTGGAATCATTTCTGGAATTaGCGTTTCCAAGAGCTTTGGTCCTTTCCCAAGAAT | + |
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Preference number: 6 (lower is better) Translates to: QTKERGWNHFWN*RFQELWSFPKN Trigger: ATTCTTGGGAAAGGACCAAAGCTCTTGGAAACGGCAATTCCAGAAATGATTCCACCCACGCTCTTTGGTTTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000076228.3 |
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| CDS CCA 72 bp | TTCAGGGTTAAACTCCGTCAAACCAAAGAGCGTGGGTaGAATCATTTCTGGAATTGCCGTTTCCAAGAGCTT | + |
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Preference number: 6 (lower is better) Translates to: FRVKLRQTKERG*NHFWNCRFQEL Trigger: AAGCTCTTGGAAACGGCAATTCCAGAAATGATTCCACCCACGCTCTTTGGTTTGACGGAGTTTAACCCTGAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000076228.3 |
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| CDS CAA 72 bp | TCAAACCAAAGAGCGTGGGTGGAATCATTTCTGGAATaGCCGTTTCCAAGAGCTTTGGTCCTTTCCCAAGAA | + |
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Preference number: 6 (lower is better) Translates to: SNQRAWVESFLE*PFPRALVLSQE Trigger: TTCTTGGGAAAGGACCAAAGCTCTTGGAAACGGCAATTCCAGAAATGATTCCACCCACGCTCTTTGGTTTGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000076228.3 |
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