RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for RCBTB2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000022106

Ensembl transcript IDs: ENSMUST00000022702.13, ENSMUST00000110952.10, ENSMUST00000163797.2, ENSMUST00000164298.8, ENSMUST00000164822.8, ENSMUST00000167401.8, ENSMUST00000169479.8, ENSMUST00000169513.8, ENSMUST00000170677.8, ENSMUST00000171767.8

Found 294 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp ACAGTCCCCACCAACCTACCCACAAAGCTATTTACAGTTGGCACGTaGTGGGAGAGGGAGACTCCCCACAAGAGTGGCACTGGTACACTT +
Preference number: 1 (lower is better)
Translates to: TVPTNLPTKLFTVGT*WERETPHKSGTGTL
Trigger: AAGTGTACCAGTGCCACTCTTGTGGGGAGTCTCCCTCTCCCAGCACGTGCCAACTGTAAATAGCTTTGTGGGTAGGTTGGTGGGGACTGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000022702.13
ENSMUST00000164822.8
ENSMUST00000167401.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
3UTR TCA 90 bp CTCATAAGCATTGGGCCTACCCTGAAAGAACAGGACACACAGGTATaGAATCAGAGACTGACAGCATGTAAGAGACCTGTACAAGCTCAT +
Preference number: 1 (lower is better)
Translates to: LISIGPTLKEQDTQV*NQRLTACKRPVQAH
Trigger: ATGAGCTTGTACAGGTCTCTTACATGCTGTCAGTCTCTGATTTCATACCTGTGTGTCCTGTTCTTTCAGGGTAGGCCCAATGCTTATGAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000022702.13
ENSMUST00000164822.8
ENSMUST00000167401.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
3UTR CCA 90 bp CATGCCTCTGTCACTCGCTTGCTAGATTATGATGTGCTCTATGTATaGCATCTGCAAGGTGAAGAACATCGACCTCAAGTTCAAAATCAT +
Preference number: 1 (lower is better)
Translates to: HASVTRLLDYDVLYV*HLQGEEHRPQVQNH
Trigger: ATGATTTTGAACTTGAGGTCGATGTTCTTCACCTTGCAGATGCCATACATAGAGCACATCATAATCTAGCAAGCGAGTGACAGAGGCATG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000171767.8
3UTR TCA 90 bp ACTGAAGCCAAAGTCAGGGTACTTTACAAACTTGGTAGTCAGTCATaGGTAATTGAGTTAGCTGCTTGCATTTTGTTCTGTAAATACAAA +
Preference number: 1 (lower is better)
Translates to: TEAKVRVLYKLGSQS*VIELAACILFCKYK
Trigger: TTTGTATTTACAGAACAAAATGCAAGCAGCTAACTCAATTACTCATGACTGACTACCAAGTTTGTAAAGTACCCTGACTTTGGCTTCAGT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000171767.8
3UTR-3UTR TCA 90 bp TGGGAGAGGGAGACTCCCCACAAGAGTGGCACTGGTACACTTTCAGCTTCTATGGCAGATAGAGAGAACTaGCTACAGCCTTTTGACAGA +
Preference number: 2 (lower is better)
Translates to: WERETPHKSGTGTLSASMADREN*LQPFDR
Trigger: TCTGTCAAAAGGCTGTAGTCAGTTCTCTCTATCTGC...CATAGAAGCTGAAAGTGTACCAGTGCCACTCTTGTGGGGAGTCTCCCTCTCCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000022702.13
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
3UTR-3UTR TCA 90 bp AATCAGAGACTGACAGCATGTAAGAGACCTGTACAAGCTCATACCAGACAGATCGTCAGAGAAAGGAGGTaGACACAGTCCCCACCAACC +
Preference number: 2 (lower is better)
Translates to: NQRLTACKRPVQAHTRQIVRERR*TQSPPT
Trigger: GGTTGGTGGGGACTGTGTTCACCTCCTTTCTCTGAC...GATCTGTCTGGTATGAGCTTGTACAGGTCTCTTACATGCTGTCAGTCTCTGATT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000022702.13
ENSMUST00000164822.8
ENSMUST00000167401.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
3UTR-3UTR TCA 90 bp CTTGACAGCAGCAGAGAGCAGAGCAATAGCATTCTCCTCACAGATTCCTTGCTTCATCAACCAGAAACTTaGGGTCTGCAGTGTCAGGGT +
Preference number: 2 (lower is better)
Translates to: LDSSREQSNSILLTDSLLHQPET*GLQCQG
Trigger: ACCCTGACACTGCAGACCTCAAGTTTCTGGTTGATG...AAGCAAGGAATCTGTGAGGAGAATGCTATTGCTCTGCTCTCTGCTGCTGTCAAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000163797.2
ENSMUST00000164298.8
3UTR-3UTR TCA 90 bp CGAGTTACTCATAAGCATTGGGCCTACCCTGAAAGAACAGGACACACAGGTATGCTGACTACAGCCTTTTaGCAGAAGACAAGAATCTGG +
Preference number: 2 (lower is better)
Translates to: RVTHKHWAYPERTGHTGMLTTAF*QKTRIW
Trigger: CCAGATTCTTGTCTTCTGTCAAAAGGCTGTAGTCAG...CATACCTGTGTGTCCTGTTCTTTCAGGGTAGGCCCAATGCTTATGAGTAACTCG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000022702.13
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
3UTR-3UTR GCA 90 bp TACTTGACAGCAGCAGAGAGCAGAGCAATAGCATTCTCCTCACAGATTCCTTGCCAGAAACTTGAGGTCTaGAGTGTCAGGGTTGTCAAA +
Preference number: 2 (lower is better)
Translates to: YLTAAESRAIAFSSQIPCQKLEV*SVRVVK
Trigger: TTTGACAACCCTGACACTGCAGACCTCAAGTTTCTG...GCAAGGAATCTGTGAGGAGAATGCTATTGCTCTGCTCTCTGCTGCTGTCAAGTA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000163797.2
ENSMUST00000164298.8
3UTR-3UTR CCA 90 bp AGACCTGTACAAGCTCATACCAGACAGATCCCTGGTCAGAGAAAGGAGGTGAACTTTGCTGGGGTGAAATaGGAAGGCTTAAGCATTCTT +
Preference number: 2 (lower is better)
Translates to: RPVQAHTRQIPGQRKEVNFAGVK*EGLSIL
Trigger: AAGAATGCTTAAGCCTTCCCATTTCACCCCAGCAAA...GTTCACCTCCTTTCTCTGACCAGGGATCTGTCTGGTATGAGCTTGTACAGGTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000022702.13
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
3UTR-3UTR GCA 90 bp TCTTGGGGCACCCTTATGATGGACAGTGAATTAACTGAGTGCCTTTTATATATAGGAGCCCTCAGTGCCTaGTACTGTAAATCTCGGGGT +
Preference number: 2 (lower is better)
Translates to: SWGTLMMDSELTECLLYIGALSA*YCKSRG
Trigger: ACCCCGAGATTTACAGTAGCAGGCACTGAGGGCTCC...TATATATAAAAGGCACTCAGTTAATTCACTGTCCATCATAAGGGTGCCCCAAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000022702.13
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
3UTR-3UTR CCA 90 bp AACAGAGCCAAGAAAGCTGTTAGCGAGTTACTCATAAGCATTGGGCCTACCCTGTTTGCTGGGGTGAAATaGGAAGGCTTAAGCATTCTT +
Preference number: 2 (lower is better)
Translates to: NRAKKAVSELLISIGPTLFAGVK*EGLSIL
Trigger: AAGAATGCTTAAGCCTTCCCATTTCACCCCAGCAAA...CAGGGTAGGCCCAATGCTTATGAGTAACTCGCTAACAGCTTTCTTGGCTCTGTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000022702.13
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
3UTR-3UTR CCA 90 bp AAAGGAGGTGAACACAGTCCCCACCAACCTACCCACAAAGCTATTTACAGTTGGTTTGCTGGGGTGAAATaGGAAGGCTTAAGCATTCTT +
Preference number: 2 (lower is better)
Translates to: KGGEHSPHQPTHKAIYSWFAGVK*EGLSIL
Trigger: AAGAATGCTTAAGCCTTCCCATTTCACCCCAGCAAA...CCAACTGTAAATAGCTTTGTGGGTAGGTTGGTGGGGACTGTGTTCACCTCCTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000022702.13
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
3UTR-3UTR CCA 90 bp GTGAACACAGTCCCCACCAACCTACCCACAAAGCTATTTACAGTTGGCACGTGCTTTATTTATCTTTGCTaGGGTGAAATGGGAAGGCTT +
Preference number: 2 (lower is better)
Translates to: VNTVPTNLPTKLFTVGTCFIYLC*GEMGRL
Trigger: AAGCCTTCCCATTTCACCCCAGCAAAGATAAATAAA...GCACGTGCCAACTGTAAATAGCTTTGTGGGTAGGTTGGTGGGGACTGTGTTCAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000022702.13
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
3UTR-3UTR CCA 90 bp AGAAAGGAGGTGAACACAGTCCCCACCAACCTACCCACAAAGCTATTTACAGTTCCACAAGAGTGGCACTaGTACACTTTCAGCTTCTAT +
Preference number: 2 (lower is better)
Translates to: RKEVNTVPTNLPTKLFTVPQEWH*YTFSFY
Trigger: ATAGAAGCTGAAAGTGTACCAGTGCCACTCTTGTGG...AACTGTAAATAGCTTTGTGGGTAGGTTGGTGGGGACTGTGTTCACCTCCTTTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000022702.13
ENSMUST00000164822.8
ENSMUST00000167401.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
3UTR CAA 90 bp TGTAAATCTCGGGGTAGGCAGATAGAGAGAACTGACTACAGCCTTTaGACAGAAGACAAGAATCTGGCCAGATGTAGTTCTCATCAACAC +
Preference number: 2 (lower is better)
Translates to: CKSRGRQIERTDYSL*TEDKNLARCSSHQH
Trigger: GTGTTGATGAGAACTACATCTGGCCAGATTCTTGTCTTCTGTCAAAAGGCTGTAGTCAGTTCTCTCTATCTGCCTACCCCGAGATTTACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000022702.13
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
3UTR-3UTR TCA 90 bp TTGAGCAACAAAACAGATCCAGCCTACATTCAGATCACAGATCACAACACCATGCTTAAAAGAGCCAGGTaGGGTAGTATGGTCCCTCAT +
Preference number: 2 (lower is better)
Translates to: LSNKTDPAYIQITDHNTMLKRAR*GSMVPH
Trigger: ATGAGGGACCATACTACCTCACCTGGCTCTTTTAAG...CATGGTGTTGTGATCTGTGATCTGAATGTAGGCTGGATCTGTTTTGTTGCTCAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000171767.8
3UTR-3UTR CCA 90 bp AGAAAGGAGGTGAACACAGTCCCCACCAACCTACCCACAAAGCTATTTACAGTTTTTGCTGGGGTGAAATaGGAAGGCTTAAGCATTCTT +
Preference number: 2 (lower is better)
Translates to: RKEVNTVPTNLPTKLFTVFAGVK*EGLSIL
Trigger: AAGAATGCTTAAGCCTTCCCATTTCACCCCAGCAAA...AACTGTAAATAGCTTTGTGGGTAGGTTGGTGGGGACTGTGTTCACCTCCTTTCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000022702.13
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
3UTR-3UTR CCA 90 bp ACACACACACACACACAAAACAGAGCCAAGAAAGCTGTTAGCGAGTTACTCATAAAAGCTATTTACAGTTaGCACGTGCTGGGAGAGGGA +
Preference number: 2 (lower is better)
Translates to: THTHTQNRAKKAVSELLIKAIYS*HVLGEG
Trigger: TCCCTCTCCCAGCACGTGCCAACTGTAAATAGCTTT...TATGAGTAACTCGCTAACAGCTTTCTTGGCTCTGTTTTGTGTGTGTGTGTGTGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000022702.13
ENSMUST00000164822.8
ENSMUST00000167401.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
3UTR-3UTR GCA 90 bp TTGAGCAACAAAACAGATCCAGCCTACATTCAGATCACAGATCACAACACCATGTCTATGTATGGCATCTaGAAGGTGAAGAACATCGAC +
Preference number: 2 (lower is better)
Translates to: LSNKTDPAYIQITDHNTMSMYGI*KVKNID
Trigger: GTCGATGTTCTTCACCTTGCAGATGCCATACATAGA...CATGGTGTTGTGATCTGTGATCTGAATGTAGGCTGGATCTGTTTTGTTGCTCAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000171767.8
3UTR-3UTR CCA 90 bp CTATGTATCAGCCAGCTGAATACTGAACCATTTCTCCAGATTAGCAAACTATCATATATCATACCCAGTTaGAGCCCTCAGTGCCTGCTA +
Preference number: 2 (lower is better)
Translates to: LCISQLNTEPFLQISKLSYIIPS*SPQCLL
Trigger: TAGCAGGCACTGAGGGCTCCAACTGGGTATGATATA...TGATAGTTTGCTAATCTGGAGAAATGGTTCAGTATTCAGCTGGCTGATACATAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000022702.13
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
3UTR-3UTR CCA 90 bp CTATGTATCAGCCAGCTGAATACTGAACCATTTCTCCAGATTAGCAAACTATCATACCAGACAGATCCCTaGTCAGAGAAAGGAGGTGAA +
Preference number: 2 (lower is better)
Translates to: LCISQLNTEPFLQISKLSYQTDP*SEKGGE
Trigger: TTCACCTCCTTTCTCTGACCAGGGATCTGTCTGGTA...TGATAGTTTGCTAATCTGGAGAAATGGTTCAGTATTCAGCTGGCTGATACATAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000022702.13
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
3UTR-3UTR CCA 90 bp TTGAGCAACAAAACAGATCCAGCCTACATTCAGATCACAGATCACAACACCATGGATGTGCTCTATGTATaGCATCTGCAAGGTGAAGAA +
Preference number: 2 (lower is better)
Translates to: LSNKTDPAYIQITDHNTMDVLYV*HLQGEE
Trigger: TTCTTCACCTTGCAGATGCCATACATAGAGCACATC...CATGGTGTTGTGATCTGTGATCTGAATGTAGGCTGGATCTGTTTTGTTGCTCAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000171767.8
3UTR-3UTR TCA 90 bp TTTCTCTTTTGCTACACAATGGCTTGTTTTGGTCTAGAAACTCATTTCTCCATCGCAGATAGAGAGAACTaGCTACAGCCTTTTGACAGA +
Preference number: 2 (lower is better)
Translates to: FLFCYTMACFGLETHFSIADREN*LQPFDR
Trigger: TCTGTCAAAAGGCTGTAGTCAGTTCTCTCTATCTGC...GATGGAGAAATGAGTTTCTAGACCAAAACAAGCCATTGTGTAGCAAAAGAGAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
3UTR-3UTR TCA 90 bp TGGTCTAGAAACTCATTTCTCCATCACAATGCTACCCATGAAATGTGTTCCTTTGATATCTACCATAGGTaGCTCAAAGGAAGAAATGGT +
Preference number: 2 (lower is better)
Translates to: WSRNSFLHHNATHEMCSFDIYHR*LKGRNG
Trigger: ACCATTTCTTCCTTTGAGTCACCTATGGTAGATATC...AAAGGAACACATTTCATGGGTAGCATTGTGATGGAGAAATGAGTTTCTAGACCA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
3UTR CAA 90 bp ACTTGGTGGAATCCAGTGCTACATTTTGTTCAGTTTGTTTCTCTTTaGCTACACAATGGCTTGTTTTGGTCTAGAAACTCATTTCTCCAT +
Preference number: 2 (lower is better)
Translates to: TWWNPVLHFVQFVSL*LHNGLFWSRNSFLH
Trigger: ATGGAGAAATGAGTTTCTAGACCAAAACAAGCCATTGTGTAGCAAAAGAGAAACAAACTGAACAAAATGTAGCACTGGATTCCACCAAGT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
3UTR CAA 90 bp ATAGTATCATATTGTGAGACACTTGGTGGAATCCAGTGCTACATTTaGTTCAGTTTGTTTCTCTTTTGCTACACAATGGCTTGTTTTGGT +
Preference number: 2 (lower is better)
Translates to: IVSYCETLGGIQCYI*FSLFLFCYTMACFG
Trigger: ACCAAAACAAGCCATTGTGTAGCAAAAGAGAAACAAACTGAACAAAATGTAGCACTGGATTCCACCAAGTGTCTCACAATATGATACTAT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
3UTR GCA 72 bp ACCAACCTACCCACAAAGCTATTTACAGTTGGCACGTaGTGGGAGAGGGAGACTCCCCACAAGAGTGGCACT +
Preference number: 3 (lower is better)
Translates to: TNLPTKLFTVGT*WERETPHKSGT
Trigger: AGTGCCACTCTTGTGGGGAGTCTCCCTCTCCCAGCACGTGCCAACTGTAAATAGCTTTGTGGGTAGGTTGGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000022702.13
ENSMUST00000164822.8
ENSMUST00000167401.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
3UTR CCA 72 bp AACCTACCCACAAAGCTATTTACAGTTGGCACGTGCTaGGAGAGGGAGACTCCCCACAAGAGTGGCACTGGT +
Preference number: 3 (lower is better)
Translates to: NLPTKLFTVGTC*ERETPHKSGTG
Trigger: ACCAGTGCCACTCTTGTGGGGAGTCTCCCTCTCCCAGCACGTGCCAACTGTAAATAGCTTTGTGGGTAGGTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000022702.13
ENSMUST00000164822.8
ENSMUST00000167401.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
3UTR CCA 72 bp GTGCTGGGAGAGGGAGACTCCCCACAAGAGTGGCACTaGTACACTTTCAGCTTCTATGTGGTATATCATACC +
Preference number: 3 (lower is better)
Translates to: VLGEGDSPQEWH*YTFSFYVVYHT
Trigger: GGTATGATATACCACATAGAAGCTGAAAGTGTACCAGTGCCACTCTTGTGGGGAGTCTCCCTCTCCCAGCAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000022702.13
ENSMUST00000164822.8
ENSMUST00000167401.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
3UTR-3UTR CAA 90 bp TACTTGACAGCAGCAGAGAGCAGAGCAATAGCATTCTCCTCACAGATTCCTTGCCCATCAACCAGAAACTaGAGGTCTGCAGTGTCAGGG +
Preference number: 3 (lower is better)
Translates to: YLTAAESRAIAFSSQIPCPSTRN*RSAVSG
Trigger: CCCTGACACTGCAGACCTCAAGTTTCTGGTTGATGG...GCAAGGAATCTGTGAGGAGAATGCTATTGCTCTGCTCTCTGCTGCTGTCAAGTA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000163797.2
ENSMUST00000164298.8
3UTR-3UTR CAA 90 bp CTTGACAGCAGCAGAGAGCAGAGCAATAGCATTCTCCTCACAGATTCCTTGCTTCCATCAACCAGAAACTaGAGGTCTGCAGTGTCAGGG +
Preference number: 3 (lower is better)
Translates to: LDSSREQSNSILLTDSLLPSTRN*RSAVSG
Trigger: CCCTGACACTGCAGACCTCAAGTTTCTGGTTGATGG...AAGCAAGGAATCTGTGAGGAGAATGCTATTGCTCTGCTCTCTGCTGCTGTCAAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000163797.2
ENSMUST00000164298.8
3UTR TCA 72 bp ATTGGGCCTACCCTGAAAGAACAGGACACACAGGTATaGAATCAGAGACTGACAGCATGTAAGAGACCTGTA +
Preference number: 3 (lower is better)
Translates to: IGPTLKEQDTQV*NQRLTACKRPV
Trigger: TACAGGTCTCTTACATGCTGTCAGTCTCTGATTTCATACCTGTGTGTCCTGTTCTTTCAGGGTAGGCCCAAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000022702.13
ENSMUST00000164822.8
ENSMUST00000167401.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
3UTR CCA 72 bp TTTTGTTTATTCCTTTTCCAACCTTCTAGCTGTTCTTaGGGCACCCTTATGATGGACAGTGAATTAACTGAG +
Preference number: 3 (lower is better)
Translates to: FCLFLFQPSSCS*GTLMMDSELTE
Trigger: CTCAGTTAATTCACTGTCCATCATAAGGGTGCCCCAAGAACAGCTAGAAGGTTGGAAAAGGAATAAACAAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000022702.13
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
3UTR CCA 72 bp CAGTTTGTTTCTCTTTTGCTACACAATGGCTTGTTTTaGTCTAGAAACTCATTTCTCCATCACAATGCTACC +
Preference number: 3 (lower is better)
Translates to: QFVSLLLHNGLF*SRNSFLHHNAT
Trigger: GGTAGCATTGTGATGGAGAAATGAGTTTCTAGACCAAAACAAGCCATTGTGTAGCAAAAGAGAAACAAACTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
3UTR GCA 72 bp ATAGTATCATATTGTGAGACACTTGGTGGAATCCAGTaGTACATTTTGTTCAGTTTGTTTCTCTTTTGCTAC +
Preference number: 3 (lower is better)
Translates to: IVSYCETLGGIQ*YILFSLFLFCY
Trigger: GTAGCAAAAGAGAAACAAACTGAACAAAATGTAGCACTGGATTCCACCAAGTGTCTCACAATATGATACTAT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR CCA 90 bp ACAGTGAGGTGGTCGTCAGGTTCCACGGAGAGAAGGCGCCAGGTGACAGCCGGGGGCGGCCACTCTGCATaGGGTGGGCTGGTTGCCACT +
Preference number: 4 (lower is better)
Translates to: TVRWSSGSTERRRQVTAGGGHSA*GGLVAT
Trigger: AGTGGCAACCAGCCCACCCCATGCAGAGTGGCCGCC...CCCGGCTGTCACCTGGCGCCTTCTCTCCGTGGAACCTGACGACCACCTCACTGT
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000163797.2
ENSMUST00000164298.8
CDS-3UTR CCA 90 bp GCACGTGCTGGGAGAGGGAGACTCCCCACAAGAGTGGCACTGGTACACTTTCAGGGCGGCCACTCTGCATaGGGTGGGCTGGTTGCCACT +
Preference number: 4 (lower is better)
Translates to: ARAGRGRLPTRVALVHFQGGHSA*GGLVAT
Trigger: AGTGGCAACCAGCCCACCCCATGCAGAGTGGCCGCC...CTGAAAGTGTACCAGTGCCACTCTTGTGGGGAGTCTCCCTCTCCCAGCACGTGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000022702.13
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR CCA 90 bp CAGTTGGCACGTGCTGGGAGAGGGAGACTCCCCACAAGAGTGGCACTGGTACACCCACAGGCAACCCGCTaGACACGGATGCCTTGCAGG +
Preference number: 4 (lower is better)
Translates to: QLARAGRGRLPTRVALVHPQATR*TRMPCR
Trigger: CCTGCAAGGCATCCGTGTCCAGCGGGTTGCCTGTGG...GTGTACCAGTGCCACTCTTGTGGGGAGTCTCCCTCTCCCAGCACGTGCCAACTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000022702.13
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR GCA 90 bp GTGGTCGTCAGGTTCCACGGAGAGAAGGCGCCAGGTGACAGCCGGGGTGGCGAACTTCATTGCCAGCACTaGCGAAGACACAAGCCTGAC +
Preference number: 4 (lower is better)
Translates to: VVVRFHGEKAPGDSRGGELHCQH*RRHKPD
Trigger: GTCAGGCTTGTGTCTTCGGCAGTGCTGGCAATGAAG...TTCGCCACCCCGGCTGTCACCTGGCGCCTTCTCTCCGTGGAACCTGACGACCAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000163797.2
ENSMUST00000164298.8
CDS-3UTR CCA 90 bp TTACAGTTGGCACGTGCTGGGAGAGGGAGACTCCCCACAAGAGTGGCACTGGTACTGCATGGGGTGGGCTaGTTGCCACTGCTGCCCAGG +
Preference number: 4 (lower is better)
Translates to: LQLARAGRGRLPTRVALVLHGVG*LPLLPR
Trigger: CCTGGGCAGCAGTGGCAACCAGCCCACCCCATGCAG...TACCAGTGCCACTCTTGTGGGGAGTCTCCCTCTCCCAGCACGTGCCAACTGTAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000022702.13
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR CCA 90 bp GCACGTGCTGGGAGAGGGAGACTCCCCACAAGAGTGGCACTGGTACACTTTCAGCCACTCTGCATGGGGTaGGCTGGTTGCCACTGCTGC +
Preference number: 4 (lower is better)
Translates to: ARAGRGRLPTRVALVHFQPLCMG*AGCHCC
Trigger: GCAGCAGTGGCAACCAGCCCACCCCATGCAGAGTGG...CTGAAAGTGTACCAGTGCCACTCTTGTGGGGAGTCTCCCTCTCCCAGCACGTGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000022702.13
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR CCA 90 bp GCACGTGCTGGGAGAGGGAGACTCCCCACAAGAGTGGCACTGGTACACTTTCAGCCACAGGCAACCCGCTaGACACGGATGCCTTGCAGG +
Preference number: 4 (lower is better)
Translates to: ARAGRGRLPTRVALVHFQPQATR*TRMPCR
Trigger: CCTGCAAGGCATCCGTGTCCAGCGGGTTGCCTGTGG...CTGAAAGTGTACCAGTGCCACTCTTGTGGGGAGTCTCCCTCTCCCAGCACGTGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000022702.13
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR CCA 90 bp ACAGTGAGGTGGTCGTCAGGTTCCACGGAGAGAAGGCGCCAGGTGACAGCCGGGTGTCCACAACAGCCATaGAGCACATCTGCCCACATG +
Preference number: 4 (lower is better)
Translates to: TVRWSSGSTERRRQVTAGCPQQP*STSAHM
Trigger: CATGTGGGCAGATGTGCTCCATGGCTGTTGTGGACA...CCCGGCTGTCACCTGGCGCCTTCTCTCCGTGGAACCTGACGACCACCTCACTGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000163797.2
ENSMUST00000164298.8
CDS-3UTR GCA 90 bp CTGGGAGAGGGAGACTCCCCACAAGAGTGGCACTGGTACACTTTCAGCTTCTATATGGGGTGGGCTGGTTaGCACTGCTGCCCAGGCCCA +
Preference number: 4 (lower is better)
Translates to: LGEGDSPQEWHWYTFSFYMGWAG*HCCPGP
Trigger: TGGGCCTGGGCAGCAGTGGCAACCAGCCCACCCCAT...ATAGAAGCTGAAAGTGTACCAGTGCCACTCTTGTGGGGAGTCTCCCTCTCCCAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000022702.13
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR TCA 90 bp ACAGTGAGGTGGTCGTCAGGTTCCACGGAGAGAAGGCGCCAGGTGACAGCCGGGCCGAAGACACAAGCCTaGCGAATCAACTGTAACTCT +
Preference number: 4 (lower is better)
Translates to: TVRWSSGSTERRRQVTAGPKTQA*RINCNS
Trigger: AGAGTTACAGTTGATTCGTCAGGCTTGTGTCTTCGG...CCCGGCTGTCACCTGGCGCCTTCTCTCCGTGGAACCTGACGACCACCTCACTGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000163797.2
ENSMUST00000164298.8
CDS-3UTR CCA 90 bp CTGGGAGAGGGAGACTCCCCACAAGAGTGGCACTGGTACACTTTCAGCTTCTATCCACAGGCAACCCGCTaGACACGGATGCCTTGCAGG +
Preference number: 4 (lower is better)
Translates to: LGEGDSPQEWHWYTFSFYPQATR*TRMPCR
Trigger: CCTGCAAGGCATCCGTGTCCAGCGGGTTGCCTGTGG...ATAGAAGCTGAAAGTGTACCAGTGCCACTCTTGTGGGGAGTCTCCCTCTCCCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000022702.13
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR GCA 90 bp GTGGTCGTCAGGTTCCACGGAGAGAAGGCGCCAGGTGACAGCCGGGGTGGCGAAAGCCACTGCAGTTTGTaGCAAGCACAAAAATCTCAT +
Preference number: 4 (lower is better)
Translates to: VVVRFHGEKAPGDSRGGESHCSL*QAQKSH
Trigger: ATGAGATTTTTGTGCTTGGCACAAACTGCAGTGGCT...TTCGCCACCCCGGCTGTCACCTGGCGCCTTCTCTCCGTGGAACCTGACGACCAC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000163797.2
ENSMUST00000164298.8
CDS-3UTR GCA 90 bp CGAGTTACTCATAAGCATTGGGCCTACCCTGAAAGAACAGGACACACAGGTATGCCCGCTGGACACGGATaGCTTGCAGGGCGGCCACTC +
Preference number: 4 (lower is better)
Translates to: RVTHKHWAYPERTGHTGMPAGHG*LAGRPL
Trigger: GAGTGGCCGCCCTGCAAGGCATCCGTGTCCAGCGGG...CATACCTGTGTGTCCTGTTCTTTCAGGGTAGGCCCAATGCTTATGAGTAACTCG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000022702.13
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR CCA 90 bp GCACGTGCTGGGAGAGGGAGACTCCCCACAAGAGTGGCACTGGTACACTTTCAGTGTCCACAACAGCCATaGAGCACATCTGCCCACATG +
Preference number: 4 (lower is better)
Translates to: ARAGRGRLPTRVALVHFQCPQQP*STSAHM
Trigger: CATGTGGGCAGATGTGCTCCATGGCTGTTGTGGACA...CTGAAAGTGTACCAGTGCCACTCTTGTGGGGAGTCTCCCTCTCCCAGCACGTGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000022702.13
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR GCA 90 bp TACTTGACAGCAGCAGAGAGCAGAGCAATAGCATTCTCCTCACAGATTCCTTGCATGGGGTGGGCTGGTTaGCACTGCTGCCCAGGCCCA +
Preference number: 4 (lower is better)
Translates to: YLTAAESRAIAFSSQIPCMGWAG*HCCPGP
Trigger: TGGGCCTGGGCAGCAGTGGCAACCAGCCCACCCCAT...GCAAGGAATCTGTGAGGAGAATGCTATTGCTCTGCTCTCTGCTGCTGTCAAGTA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000163797.2
ENSMUST00000164298.8
CDS-3UTR CCA 90 bp CAGAGACTGACAGCATGTAAGAGACCTGTACAAGCTCATACCAGACAGATCCCTCTGCATGGGGTGGGCTaGTTGCCACTGCTGCCCAGG +
Preference number: 4 (lower is better)
Translates to: QRLTACKRPVQAHTRQIPLHGVG*LPLLPR
Trigger: CCTGGGCAGCAGTGGCAACCAGCCCACCCCATGCAG...AGGGATCTGTCTGGTATGAGCTTGTACAGGTCTCTTACATGCTGTCAGTCTCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000022702.13
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR CCA 90 bp AACAGAGCCAAGAAAGCTGTTAGCGAGTTACTCATAAGCATTGGGCCTACCCTGCTGCATGGGGTGGGCTaGTTGCCACTGCTGCCCAGG +
Preference number: 4 (lower is better)
Translates to: NRAKKAVSELLISIGPTLLHGVG*LPLLPR
Trigger: CCTGGGCAGCAGTGGCAACCAGCCCACCCCATGCAG...CAGGGTAGGCCCAATGCTTATGAGTAACTCGCTAACAGCTTTCTTGGCTCTGTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000022702.13
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR CCA 90 bp GGCATCTGCAAGGTGAAGAACATCGACCTCAAGTTCAAAATCATCGTCACTGCCCTGCATGGGGTGGGCTaGTTGCCACTGCTGCCCAGG +
Preference number: 4 (lower is better)
Translates to: GICKVKNIDLKFKIIVTALHGVG*LPLLPR
Trigger: CCTGGGCAGCAGTGGCAACCAGCCCACCCCATGCAG...GGCAGTGACGATGATTTTGAACTTGAGGTCGATGTTCTTCACCTTGCAGATGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000171767.8
CDS-3UTR CCA 90 bp TGGGCCTACCCTGAAAGAACAGGACACACAGGTATGAAATCAGAGACTGACAGCCCACTCTGCATGGGGTaGGCTGGTTGCCACTGCTGC +
Preference number: 4 (lower is better)
Translates to: WAYPERTGHTGMKSETDSPLCMG*AGCHCC
Trigger: GCAGCAGTGGCAACCAGCCCACCCCATGCAGAGTGG...GCTGTCAGTCTCTGATTTCATACCTGTGTGTCCTGTTCTTTCAGGGTAGGCCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000022702.13
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR CCA 90 bp GTGAACACAGTCCCCACCAACCTACCCACAAAGCTATTTACAGTTGGCACGTGCTCGGCCACAGTGAGGTaGTCGTCAGGTTCCACGGAG +
Preference number: 4 (lower is better)
Translates to: VNTVPTNLPTKLFTVGTCSATVR*SSGSTE
Trigger: CTCCGTGGAACCTGACGACCACCTCACTGTGGCCGA...GCACGTGCCAACTGTAAATAGCTTTGTGGGTAGGTTGGTGGGGACTGTGTTCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000022702.13
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR TCA 90 bp CTGGGAGAGGGAGACTCCCCACAAGAGTGGCACTGGTACACTTTCAGCTTCTATTCGGTGCAGCAGAAGTaGGTGTGGTGTGGAAGGATC +
Preference number: 4 (lower is better)
Translates to: LGEGDSPQEWHWYTFSFYSVQQK*VWCGRI
Trigger: GATCCTTCCACACCACACTCACTTCTGCTGCACCGA...ATAGAAGCTGAAAGTGTACCAGTGCCACTCTTGTGGGGAGTCTCCCTCTCCCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000022702.13
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR GCA 90 bp ATCATACTTGACAGCAGCAGAGAGCAGAGCAATAGCATTCTCCTCACAGATTCCTCCGCTGGACACGGATaGCTTGCAGGGCGGCCACTC +
Preference number: 4 (lower is better)
Translates to: IILDSSREQSNSILLTDSSAGHG*LAGRPL
Trigger: GAGTGGCCGCCCTGCAAGGCATCCGTGTCCAGCGGA...GGAATCTGTGAGGAGAATGCTATTGCTCTGCTCTCTGCTGCTGTCAAGTATGAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000163797.2
ENSMUST00000164298.8
CDS-3UTR CCA 90 bp TACTTGACAGCAGCAGAGAGCAGAGCAATAGCATTCTCCTCACAGATTCCTTGCCCACTCTGCATGGGGTaGGCTGGTTGCCACTGCTGC +
Preference number: 4 (lower is better)
Translates to: YLTAAESRAIAFSSQIPCPLCMG*AGCHCC
Trigger: GCAGCAGTGGCAACCAGCCCACCCCATGCAGAGTGG...GCAAGGAATCTGTGAGGAGAATGCTATTGCTCTGCTCTCTGCTGCTGTCAAGTA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000163797.2
ENSMUST00000164298.8
CDS-3UTR CCA 90 bp CTCCCCACAAGAGTGGCACTGGTACACTTTCAGCTTCTATGTGGTATATCATACGGCGGCCACTCTGCATaGGGTGGGCTGGTTGCCACT +
Preference number: 4 (lower is better)
Translates to: LPTRVALVHFQLLCGISYGGHSA*GGLVAT
Trigger: AGTGGCAACCAGCCCACCCCATGCAGAGTGGCCGCC...GTATGATATACCACATAGAAGCTGAAAGTGTACCAGTGCCACTCTTGTGGGGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000022702.13
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR TCA 90 bp TTACAGTTGGCACGTGCTGGGAGAGGGAGACTCCCCACAAGAGTGGCACTGGTAAGATCCTACTTGCCCTaGGTTATTATAACCCCAGGC +
Preference number: 4 (lower is better)
Translates to: LQLARAGRGRLPTRVALVRSYLP*VIITPG
Trigger: GCCTGGGGTTATAATAACTCAGGGCAAGTAGGATCT...TACCAGTGCCACTCTTGTGGGGAGTCTCCCTCTCCCAGCACGTGCCAACTGTAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000022702.13
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR TCA 90 bp GTGAACACAGTCCCCACCAACCTACCCACAAAGCTATTTACAGTTGGCACGTGCGGGCTGGTTAGCTGTTaGTCCAGATCCTACTTGCCC +
Preference number: 4 (lower is better)
Translates to: VNTVPTNLPTKLFTVGTCGLVSC*SRSYLP
Trigger: GGGCAAGTAGGATCTGGATCAACAGCTAACCAGCCC...GCACGTGCCAACTGTAAATAGCTTTGTGGGTAGGTTGGTGGGGACTGTGTTCAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000022702.13
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR GCA 90 bp GGAGATAGGCTGATGTTATCTGTGTATAGATACTCCAGGAAAGCTCGGAACACAATGGGGTGGGCTGGTTaGCACTGCTGCCCAGGCCCA +
Preference number: 4 (lower is better)
Translates to: GDRLMLSVYRYSRKARNTMGWAG*HCCPGP
Trigger: TGGGCCTGGGCAGCAGTGGCAACCAGCCCACCCCAT...TGTGTTCCGAGCTTTCCTGGAGTATCTATACACAGATAACATCAGCCTATCTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000163797.2
ENSMUST00000164298.8
CDS-3UTR GCA 90 bp ACTCCCCACAAGAGTGGCACTGGTACACTTTCAGCTTCTATGTGGTATATCATAATGGGGTGGGCTGGTTaGCACTGCTGCCCAGGCCCA +
Preference number: 4 (lower is better)
Translates to: TPHKSGTGTLSASMWYIIMGWAG*HCCPGP
Trigger: TGGGCCTGGGCAGCAGTGGCAACCAGCCCACCCCAT...TATGATATACCACATAGAAGCTGAAAGTGTACCAGTGCCACTCTTGTGGGGAGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000022702.13
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR GCA 90 bp CACAAGAGTGGCACTGGTACACTTTCAGCTTCTATGTGGTATATCATACCCAGTATGGGGTGGGCTGGTTaGCACTGCTGCCCAGGCCCA +
Preference number: 4 (lower is better)
Translates to: HKSGTGTLSASMWYIIPSMGWAG*HCCPGP
Trigger: TGGGCCTGGGCAGCAGTGGCAACCAGCCCACCCCAT...ACTGGGTATGATATACCACATAGAAGCTGAAAGTGTACCAGTGCCACTCTTGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000022702.13
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR GCA 90 bp AGAGTGGCACTGGTACACTTTCAGCTTCTATGTGGTATATCATACCCAGTTGGAATGGGGTGGGCTGGTTaGCACTGCTGCCCAGGCCCA +
Preference number: 4 (lower is better)
Translates to: RVALVHFQLLCGISYPVGMGWAG*HCCPGP
Trigger: TGGGCCTGGGCAGCAGTGGCAACCAGCCCACCCCAT...TCCAACTGGGTATGATATACCACATAGAAGCTGAAAGTGTACCAGTGCCACTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000022702.13
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR GCA 90 bp CTTGACAGCAGCAGAGAGCAGAGCAATAGCATTCTCCTCACAGATTCCTTGCTTTGGACACGGATGCCTTaGAGGGCGGCCACTCTGCAT +
Preference number: 4 (lower is better)
Translates to: LDSSREQSNSILLTDSLLWTRMP*RAATLH
Trigger: ATGCAGAGTGGCCGCCCTGCAAGGCATCCGTGTCCA...AAGCAAGGAATCTGTGAGGAGAATGCTATTGCTCTGCTCTCTGCTGCTGTCAAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000163797.2
ENSMUST00000164298.8
CDS-3UTR GCA 90 bp CGAGTTACTCATAAGCATTGGGCCTACCCTGAAAGAACAGGACACACAGGTATGTGGACACGGATGCCTTaGAGGGCGGCCACTCTGCAT +
Preference number: 4 (lower is better)
Translates to: RVTHKHWAYPERTGHTGMWTRMP*RAATLH
Trigger: ATGCAGAGTGGCCGCCCTGCAAGGCATCCGTGTCCA...CATACCTGTGTGTCCTGTTCTTTCAGGGTAGGCCCAATGCTTATGAGTAACTCG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000022702.13
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR GCA 90 bp TTGAGCAACAAAACAGATCCAGCCTACATTCAGATCACAGATCACAACACCATGCCCGCTGGACACGGATaGCTTGCAGGGCGGCCACTC +
Preference number: 4 (lower is better)
Translates to: LSNKTDPAYIQITDHNTMPAGHG*LAGRPL
Trigger: GAGTGGCCGCCCTGCAAGGCATCCGTGTCCAGCGGG...CATGGTGTTGTGATCTGTGATCTGAATGTAGGCTGGATCTGTTTTGTTGCTCAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000171767.8
CDS-3UTR GCA 90 bp GCACGTGCTGGGAGAGGGAGACTCCCCACAAGAGTGGCACTGGTACACTTTCAGCAGAAACTTGAGGTCTaGAGTGTCAGGGTTGTCAAA +
Preference number: 4 (lower is better)
Translates to: ARAGRGRLPTRVALVHFQQKLEV*SVRVVK
Trigger: TTTGACAACCCTGACACTGCAGACCTCAAGTTTCTG...CTGAAAGTGTACCAGTGCCACTCTTGTGGGGAGTCTCCCTCTCCCAGCACGTGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000022702.13
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR CCA 90 bp GGAGATAGGCTGATGTTATCTGTGTATAGATACTCCAGGAAAGCTCGGAACACACTGCATGGGGTGGGCTaGTTGCCACTGCTGCCCAGG +
Preference number: 4 (lower is better)
Translates to: GDRLMLSVYRYSRKARNTLHGVG*LPLLPR
Trigger: CCTGGGCAGCAGTGGCAACCAGCCCACCCCATGCAG...TGTGTTCCGAGCTTTCCTGGAGTATCTATACACAGATAACATCAGCCTATCTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000163797.2
ENSMUST00000164298.8
CDS-3UTR CCA 90 bp ACTCCCCACAAGAGTGGCACTGGTACACTTTCAGCTTCTATGTGGTATATCATAGGCGGCCACTCTGCATaGGGTGGGCTGGTTGCCACT +
Preference number: 4 (lower is better)
Translates to: TPHKSGTGTLSASMWYIIGGHSA*GGLVAT
Trigger: AGTGGCAACCAGCCCACCCCATGCAGAGTGGCCGCC...TATGATATACCACATAGAAGCTGAAAGTGTACCAGTGCCACTCTTGTGGGGAGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000022702.13
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR CCA 90 bp TACTGTAAATCTCGGGGTAGGCAGATAGAGAGAACTGACTACAGCCTTTTGACAGGCGGCCACTCTGCATaGGGTGGGCTGGTTGCCACT +
Preference number: 4 (lower is better)
Translates to: YCKSRGRQIERTDYSLLTGGHSA*GGLVAT
Trigger: AGTGGCAACCAGCCCACCCCATGCAGAGTGGCCGCC...TGTCAAAAGGCTGTAGTCAGTTCTCTCTATCTGCCTACCCCGAGATTTACAGTA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000022702.13
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR TCA 90 bp AGGGAGACTCCCCACAAGAGTGGCACTGGTACACTTTCAGCTTCTATGTGGTATGGGCTGGTTAGCTGTTaGTCCAGATCCTACTTGCCC +
Preference number: 4 (lower is better)
Translates to: RETPHKSGTGTLSASMWYGLVSC*SRSYLP
Trigger: GGGCAAGTAGGATCTGGATCAACAGCTAACCAGCCC...ATACCACATAGAAGCTGAAAGTGTACCAGTGCCACTCTTGTGGGGAGTCTCCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000022702.13
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR TCA 90 bp TGGGCCTACCCTGAAAGAACAGGACACACAGGTATGAAATCAGAGACTGACAGCGGGCTGGTTAGCTGTTaGTCCAGATCCTACTTGCCC +
Preference number: 4 (lower is better)
Translates to: WAYPERTGHTGMKSETDSGLVSC*SRSYLP
Trigger: GGGCAAGTAGGATCTGGATCAACAGCTAACCAGCCC...GCTGTCAGTCTCTGATTTCATACCTGTGTGTCCTGTTCTTTCAGGGTAGGCCCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000022702.13
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR TCA 90 bp GCACGTGCTGGGAGAGGGAGACTCCCCACAAGAGTGGCACTGGTACACTTTCAGCCTCAGGAGATAGGCTaGTGTTATCTGTGTATAGAT +
Preference number: 4 (lower is better)
Translates to: ARAGRGRLPTRVALVHFQPQEIG*CYLCID
Trigger: ATCTATACACAGATAACATCAGCCTATCTCCTGAGG...CTGAAAGTGTACCAGTGCCACTCTTGTGGGGAGTCTCCCTCTCCCAGCACGTGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000022702.13
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR GCA 90 bp ACACACACACACACACAAAACAGAGCCAAGAAAGCTGTTAGCGAGTTACTCATAATGGGGTGGGCTGGTTaGCACTGCTGCCCAGGCCCA +
Preference number: 4 (lower is better)
Translates to: THTHTQNRAKKAVSELLIMGWAG*HCCPGP
Trigger: TGGGCCTGGGCAGCAGTGGCAACCAGCCCACCCCAT...TATGAGTAACTCGCTAACAGCTTTCTTGGCTCTGTTTTGTGTGTGTGTGTGTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000022702.13
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR GCA 90 bp AGAAAGGAGGTGAACACAGTCCCCACCAACCTACCCACAAAGCTATTTACAGTTTGGACACGGATGCCTTaGAGGGCGGCCACTCTGCAT +
Preference number: 4 (lower is better)
Translates to: RKEVNTVPTNLPTKLFTVWTRMP*RAATLH
Trigger: ATGCAGAGTGGCCGCCCTGCAAGGCATCCGTGTCCA...AACTGTAAATAGCTTTGTGGGTAGGTTGGTGGGGACTGTGTTCACCTCCTTTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000022702.13
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR GCA 90 bp TTTATCTTTGCTGGGGTGAAATGGGAAGGCTTAAGCATTCTTTTCCACATTCAGCCCGCTGGACACGGATaGCTTGCAGGGCGGCCACTC +
Preference number: 4 (lower is better)
Translates to: FIFAGVKWEGLSILFHIQPAGHG*LAGRPL
Trigger: GAGTGGCCGCCCTGCAAGGCATCCGTGTCCAGCGGG...CTGAATGTGGAAAAGAATGCTTAAGCCTTCCCATTTCACCCCAGCAAAGATAAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000022702.13
ENSMUST00000110952.10
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR GCA 90 bp CTGATGTTATCTGTGTATAGATACTCCAGGAAAGCTCGGAACACAGGATACGAATCCGCTGGACACGGATaGCTTGCAGGGCGGCCACTC +
Preference number: 4 (lower is better)
Translates to: LMLSVYRYSRKARNTGYESAGHG*LAGRPL
Trigger: GAGTGGCCGCCCTGCAAGGCATCCGTGTCCAGCGGA...TTCGTATCCTGTGTTCCGAGCTTTCCTGGAGTATCTATACACAGATAACATCAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000163797.2
ENSMUST00000164298.8
CDS-3UTR CCA 90 bp CTGATGTTATCTGTGTATAGATACTCCAGGAAAGCTCGGAACACAGGATACGAACTGCATGGGGTGGGCTaGTTGCCACTGCTGCCCAGG +
Preference number: 4 (lower is better)
Translates to: LMLSVYRYSRKARNTGYELHGVG*LPLLPR
Trigger: CCTGGGCAGCAGTGGCAACCAGCCCACCCCATGCAG...TTCGTATCCTGTGTTCCGAGCTTTCCTGGAGTATCTATACACAGATAACATCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000163797.2
ENSMUST00000164298.8
CDS-3UTR CCA 90 bp ACACACACACACACACAAAACAGAGCCAAGAAAGCTGTTAGCGAGTTACTCATACTGCATGGGGTGGGCTaGTTGCCACTGCTGCCCAGG +
Preference number: 4 (lower is better)
Translates to: THTHTQNRAKKAVSELLILHGVG*LPLLPR
Trigger: CCTGGGCAGCAGTGGCAACCAGCCCACCCCATGCAG...TATGAGTAACTCGCTAACAGCTTTCTTGGCTCTGTTTTGTGTGTGTGTGTGTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000022702.13
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR CCA 90 bp AATCAGAGACTGACAGCATGTAAGAGACCTGTACAAGCTCATACCAGACAGATCCCACTCTGCATGGGGTaGGCTGGTTGCCACTGCTGC +
Preference number: 4 (lower is better)
Translates to: NQRLTACKRPVQAHTRQIPLCMG*AGCHCC
Trigger: GCAGCAGTGGCAACCAGCCCACCCCATGCAGAGTGG...GATCTGTCTGGTATGAGCTTGTACAGGTCTCTTACATGCTGTCAGTCTCTGATT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000022702.13
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR CCA 90 bp GGAGATAGGCTGATGTTATCTGTGTATAGATACTCCAGGAAAGCTCGGAACACACCACTCTGCATGGGGTaGGCTGGTTGCCACTGCTGC +
Preference number: 4 (lower is better)
Translates to: GDRLMLSVYRYSRKARNTPLCMG*AGCHCC
Trigger: GCAGCAGTGGCAACCAGCCCACCCCATGCAGAGTGG...TGTGTTCCGAGCTTTCCTGGAGTATCTATACACAGATAACATCAGCCTATCTCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000163797.2
ENSMUST00000164298.8
CDS-3UTR CCA 90 bp TATCTTTGCTGGGGTGAAATGGGAAGGCTTAAGCATTCTTTTCCACATTCAGGAGGCGGCCACTCTGCATaGGGTGGGCTGGTTGCCACT +
Preference number: 4 (lower is better)
Translates to: YLCWGEMGRLKHSFPHSGGGHSA*GGLVAT
Trigger: AGTGGCAACCAGCCCACCCCATGCAGAGTGGCCGCC...TCCTGAATGTGGAAAAGAATGCTTAAGCCTTCCCATTTCACCCCAGCAAAGATA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000022702.13
ENSMUST00000110952.10
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR CCA 90 bp CTGATGTTATCTGTGTATAGATACTCCAGGAAAGCTCGGAACACAGGATACGAAGGCGGCCACTCTGCATaGGGTGGGCTGGTTGCCACT +
Preference number: 4 (lower is better)
Translates to: LMLSVYRYSRKARNTGYEGGHSA*GGLVAT
Trigger: AGTGGCAACCAGCCCACCCCATGCAGAGTGGCCGCC...TTCGTATCCTGTGTTCCGAGCTTTCCTGGAGTATCTATACACAGATAACATCAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000163797.2
ENSMUST00000164298.8
CDS-3UTR CCA 90 bp CACACACACACACACACACAAAACAGAGCCAAGAAAGCTGTTAGCGAGTTACTCTCGGCCACAGTGAGGTaGTCGTCAGGTTCCACGGAG +
Preference number: 4 (lower is better)
Translates to: HTHTHTQNRAKKAVSELLSATVR*SSGSTE
Trigger: CTCCGTGGAACCTGACGACCACCTCACTGTGGCCGA...GAGTAACTCGCTAACAGCTTTCTTGGCTCTGTTTTGTGTGTGTGTGTGTGTGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000022702.13
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR TCA 90 bp CTGGGAGAGGGAGACTCCCCACAAGAGTGGCACTGGTACACTTTCAGCTTCTATCCGAAGACACAAGCCTaGCGAATCAACTGTAACTCT +
Preference number: 4 (lower is better)
Translates to: LGEGDSPQEWHWYTFSFYPKTQA*RINCNS
Trigger: AGAGTTACAGTTGATTCGTCAGGCTTGTGTCTTCGG...ATAGAAGCTGAAAGTGTACCAGTGCCACTCTTGTGGGGAGTCTCCCTCTCCCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000022702.13
ENSMUST00000164822.8
ENSMUST00000167401.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR TCA 90 bp CTTGACAGCAGCAGAGAGCAGAGCAATAGCATTCTCCTCACAGATTCCTTGCTTGGGCTGGTTAGCTGTTaGTCCAGATCCTACTTGCCC +
Preference number: 4 (lower is better)
Translates to: LDSSREQSNSILLTDSLLGLVSC*SRSYLP
Trigger: GGGCAAGTAGGATCTGGATCAACAGCTAACCAGCCC...AAGCAAGGAATCTGTGAGGAGAATGCTATTGCTCTGCTCTCTGCTGCTGTCAAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000164298.8
CDS-3UTR TCA 90 bp TTACAGTTGGCACGTGCTGGGAGAGGGAGACTCCCCACAAGAGTGGCACTGGTAAGGCTGCAATCTCTATaGTTCTGTCCTTTTCCACAA +
Preference number: 4 (lower is better)
Translates to: LQLARAGRGRLPTRVALVRLQSL*FCPFPQ
Trigger: TTGTGGAAAAGGACAGAATCATAGAGATTGCAGCCT...TACCAGTGCCACTCTTGTGGGGAGTCTCCCTCTCCCAGCACGTGCCAACTGTAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000022702.13
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR TCA 90 bp TACTTGACAGCAGCAGAGAGCAGAGCAATAGCATTCTCCTCACAGATTCCTTGCTCGGTGCAGCAGAAGTaGGTGTGGTGTGGAAGGATC +
Preference number: 4 (lower is better)
Translates to: YLTAAESRAIAFSSQIPCSVQQK*VWCGRI
Trigger: GATCCTTCCACACCACACTCACTTCTGCTGCACCGA...GCAAGGAATCTGTGAGGAGAATGCTATTGCTCTGCTCTCTGCTGCTGTCAAGTA
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000163797.2
ENSMUST00000164298.8
CDS-3UTR GCA 90 bp CTTGACAGCAGCAGAGAGCAGAGCAATAGCATTCTCCTCACAGATTCCTTGCTTCCCCCAGACAGCCACTaGAGTTTGTGCCAAGCACAA +
Preference number: 4 (lower is better)
Translates to: LDSSREQSNSILLTDSLLPPDSH*SLCQAQ
Trigger: TTGTGCTTGGCACAAACTGCAGTGGCTGTCTGGGGG...AAGCAAGGAATCTGTGAGGAGAATGCTATTGCTCTGCTCTCTGCTGCTGTCAAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000163797.2
ENSMUST00000164298.8
CDS-3UTR GCA 90 bp GGCATCTGCAAGGTGAAGAACATCGACCTCAAGTTCAAAATCATCGTCACTGCCCCCCCAGACAGCCACTaGAGTTTGTGCCAAGCACAA +
Preference number: 4 (lower is better)
Translates to: GICKVKNIDLKFKIIVTAPPDSH*SLCQAQ
Trigger: TTGTGCTTGGCACAAACTGCAGTGGCTGTCTGGGGG...GGCAGTGACGATGATTTTGAACTTGAGGTCGATGTTCTTCACCTTGCAGATGCC
51% GC, longest homopolymer 7 nt, total homopolymer stretches 11 nt.
Matches the following 1 transcripts:
ENSMUST00000171767.8
CDS-3UTR GCA 90 bp TATGTATGGCATCTGCAAGGTGAAGAACATCGACCTCAAGTTCAAAATCATCGTATGGGGTGGGCTGGTTaGCACTGCTGCCCAGGCCCA +
Preference number: 4 (lower is better)
Translates to: YVWHLQGEEHRPQVQNHRMGWAG*HCCPGP
Trigger: TGGGCCTGGGCAGCAGTGGCAACCAGCCCACCCCAT...ACGATGATTTTGAACTTGAGGTCGATGTTCTTCACCTTGCAGATGCCATACATA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000171767.8
CDS-3UTR GCA 90 bp AATCAGAGACTGACAGCATGTAAGAGACCTGTACAAGCTCATACCAGACAGATCTGGACACGGATGCCTTaGAGGGCGGCCACTCTGCAT +
Preference number: 4 (lower is better)
Translates to: NQRLTACKRPVQAHTRQIWTRMP*RAATLH
Trigger: ATGCAGAGTGGCCGCCCTGCAAGGCATCCGTGTCCA...GATCTGTCTGGTATGAGCTTGTACAGGTCTCTTACATGCTGTCAGTCTCTGATT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000022702.13
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR GCA 90 bp TCTTGGGGCACCCTTATGATGGACAGTGAATTAACTGAGTGCCTTTTATATATACCCGCTGGACACGGATaGCTTGCAGGGCGGCCACTC +
Preference number: 4 (lower is better)
Translates to: SWGTLMMDSELTECLLYIPAGHG*LAGRPL
Trigger: GAGTGGCCGCCCTGCAAGGCATCCGTGTCCAGCGGG...TATATATAAAAGGCACTCAGTTAATTCACTGTCCATCATAAGGGTGCCCCAAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000022702.13
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR GCA 90 bp ATTTATCTTTGCTGGGGTGAAATGGGAAGGCTTAAGCATTCTTTTCCACATTCACCCGCTGGACACGGATaGCTTGCAGGGCGGCCACTC +
Preference number: 4 (lower is better)
Translates to: IYLCWGEMGRLKHSFPHSPAGHG*LAGRPL
Trigger: GAGTGGCCGCCCTGCAAGGCATCCGTGTCCAGCGGG...TGAATGTGGAAAAGAATGCTTAAGCCTTCCCATTTCACCCCAGCAAAGATAAAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000022702.13
ENSMUST00000110952.10
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR CCA 90 bp AGACCTGTACAAGCTCATACCAGACAGATCCCTGGTCAGAGAAAGGAGGTGAACTGTCCACAACAGCCATaGAGCACATCTGCCCACATG +
Preference number: 4 (lower is better)
Translates to: RPVQAHTRQIPGQRKEVNCPQQP*STSAHM
Trigger: CATGTGGGCAGATGTGCTCCATGGCTGTTGTGGACA...GTTCACCTCCTTTCTCTGACCAGGGATCTGTCTGGTATGAGCTTGTACAGGTCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000022702.13
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR CCA 90 bp TTTATCTTTGCTGGGGTGAAATGGGAAGGCTTAAGCATTCTTTTCCACATTCAGCTGCATGGGGTGGGCTaGTTGCCACTGCTGCCCAGG +
Preference number: 4 (lower is better)
Translates to: FIFAGVKWEGLSILFHIQLHGVG*LPLLPR
Trigger: CCTGGGCAGCAGTGGCAACCAGCCCACCCCATGCAG...CTGAATGTGGAAAAGAATGCTTAAGCCTTCCCATTTCACCCCAGCAAAGATAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 6 transcripts:
ENSMUST00000022702.13
ENSMUST00000110952.10
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR CCA 90 bp ACAAAAAGCACACACACACACACACACACACAAAACAGAGCCAAGAAAGCTGTTCCACTCTGCATGGGGTaGGCTGGTTGCCACTGCTGC +
Preference number: 4 (lower is better)
Translates to: TKSTHTHTHTQNRAKKAVPLCMG*AGCHCC
Trigger: GCAGCAGTGGCAACCAGCCCACCCCATGCAGAGTGG...AACAGCTTTCTTGGCTCTGTTTTGTGTGTGTGTGTGTGTGTGTGTGCTTTTTGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000022702.13
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR CCA 90 bp ACACACACACACACACAAAACAGAGCCAAGAAAGCTGTTAGCGAGTTACTCATACCACTCTGCATGGGGTaGGCTGGTTGCCACTGCTGC +
Preference number: 4 (lower is better)
Translates to: THTHTQNRAKKAVSELLIPLCMG*AGCHCC
Trigger: GCAGCAGTGGCAACCAGCCCACCCCATGCAGAGTGG...TATGAGTAACTCGCTAACAGCTTTCTTGGCTCTGTTTTGTGTGTGTGTGTGTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000022702.13
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR CCA 90 bp ATGTATGGCATCTGCAAGGTGAAGAACATCGACCTCAAGTTCAAAATCATCGTCCCACTCTGCATGGGGTaGGCTGGTTGCCACTGCTGC +
Preference number: 4 (lower is better)
Translates to: MYGICKVKNIDLKFKIIVPLCMG*AGCHCC
Trigger: GCAGCAGTGGCAACCAGCCCACCCCATGCAGAGTGG...GACGATGATTTTGAACTTGAGGTCGATGTTCTTCACCTTGCAGATGCCATACAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000171767.8
CDS-3UTR CCA 90 bp TATGTATGGCATCTGCAAGGTGAAGAACATCGACCTCAAGTTCAAAATCATCGTGGCGGCCACTCTGCATaGGGTGGGCTGGTTGCCACT +
Preference number: 4 (lower is better)
Translates to: YVWHLQGEEHRPQVQNHRGGHSA*GGLVAT
Trigger: AGTGGCAACCAGCCCACCCCATGCAGAGTGGCCGCC...ACGATGATTTTGAACTTGAGGTCGATGTTCTTCACCTTGCAGATGCCATACATA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000171767.8
CDS-3UTR CCA 90 bp TATCTTTGCTGGGGTGAAATGGGAAGGCTTAAGCATTCTTTTCCACATTCAGGACCACAGGCAACCCGCTaGACACGGATGCCTTGCAGG +
Preference number: 4 (lower is better)
Translates to: YLCWGEMGRLKHSFPHSGPQATR*TRMPCR
Trigger: CCTGCAAGGCATCCGTGTCCAGCGGGTTGCCTGTGG...TCCTGAATGTGGAAAAGAATGCTTAAGCCTTCCCATTTCACCCCAGCAAAGATA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000022702.13
ENSMUST00000110952.10
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR CCA 90 bp ATGTATGGCATCTGCAAGGTGAAGAACATCGACCTCAAGTTCAAAATCATCGTCCCACAGGCAACCCGCTaGACACGGATGCCTTGCAGG +
Preference number: 4 (lower is better)
Translates to: MYGICKVKNIDLKFKIIVPQATR*TRMPCR
Trigger: CCTGCAAGGCATCCGTGTCCAGCGGGTTGCCTGTGG...GACGATGATTTTGAACTTGAGGTCGATGTTCTTCACCTTGCAGATGCCATACAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000171767.8
CDS-3UTR CCA 90 bp ACTCCCCACAAGAGTGGCACTGGTACACTTTCAGCTTCTATGTGGTATATCATATCGGCCACAGTGAGGTaGTCGTCAGGTTCCACGGAG +
Preference number: 4 (lower is better)
Translates to: TPHKSGTGTLSASMWYIISATVR*SSGSTE
Trigger: CTCCGTGGAACCTGACGACCACCTCACTGTGGCCGA...TATGATATACCACATAGAAGCTGAAAGTGTACCAGTGCCACTCTTGTGGGGAGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000022702.13
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR TCA 90 bp CACACACACACACACACACAAAACAGAGCCAAGAAAGCTGTTAGCGAGTTACTCGGGCTGGTTAGCTGTTaGTCCAGATCCTACTTGCCC +
Preference number: 4 (lower is better)
Translates to: HTHTHTQNRAKKAVSELLGLVSC*SRSYLP
Trigger: GGGCAAGTAGGATCTGGATCAACAGCTAACCAGCCC...GAGTAACTCGCTAACAGCTTTCTTGGCTCTGTTTTGTGTGTGTGTGTGTGTGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000022702.13
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR TCA 90 bp ATCATACTTGACAGCAGCAGAGAGCAGAGCAATAGCATTCTCCTCACAGATTCCTCGGTGCAGCAGAAGTaGGTGTGGTGTGGAAGGATC +
Preference number: 4 (lower is better)
Translates to: IILDSSREQSNSILLTDSSVQQK*VWCGRI
Trigger: GATCCTTCCACACCACACTCACTTCTGCTGCACCGA...GGAATCTGTGAGGAGAATGCTATTGCTCTGCTCTCTGCTGCTGTCAAGTATGAT
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000163797.2
ENSMUST00000164298.8
CDS-3UTR GCA 90 bp CTTGACAGCAGCAGAGAGCAGAGCAATAGCATTCTCCTCACAGATTCCTTGCTTCTTCATTGCCAGCACTaGCGAAGACACAAGCCTGAC +
Preference number: 4 (lower is better)
Translates to: LDSSREQSNSILLTDSLLLHCQH*RRHKPD
Trigger: GTCAGGCTTGTGTCTTCGGCAGTGCTGGCAATGAAG...AAGCAAGGAATCTGTGAGGAGAATGCTATTGCTCTGCTCTCTGCTGCTGTCAAG
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000163797.2
ENSMUST00000164298.8
CDS-3UTR GCA 90 bp GAGGGAGACTCCCCACAAGAGTGGCACTGGTACACTTTCAGCTTCTATGTGGTAGATTCGTTGTCCCATTaGCCAGCTGGCTATAAGCAT +
Preference number: 4 (lower is better)
Translates to: EGDSPQEWHWYTFSFYVVDSLSH*PAGYKH
Trigger: ATGCTTATAGCCAGCTGGGCAATGGGACAACGAATC...TACCACATAGAAGCTGAAAGTGTACCAGTGCCACTCTTGTGGGGAGTCTCCCTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000022702.13
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR GCA 90 bp ATTTATCTTTGCTGGGGTGAAATGGGAAGGCTTAAGCATTCTTTTCCACATTCAATGGGGTGGGCTGGTTaGCACTGCTGCCCAGGCCCA +
Preference number: 4 (lower is better)
Translates to: IYLCWGEMGRLKHSFPHSMGWAG*HCCPGP
Trigger: TGGGCCTGGGCAGCAGTGGCAACCAGCCCACCCCAT...TGAATGTGGAAAAGAATGCTTAAGCCTTCCCATTTCACCCCAGCAAAGATAAAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 6 transcripts:
ENSMUST00000022702.13
ENSMUST00000110952.10
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR GCA 90 bp ACAAAAAGCACACACACACACACACACACACAAAACAGAGCCAAGAAAGCTGTTTGGACACGGATGCCTTaGAGGGCGGCCACTCTGCAT +
Preference number: 4 (lower is better)
Translates to: TKSTHTHTHTQNRAKKAVWTRMP*RAATLH
Trigger: ATGCAGAGTGGCCGCCCTGCAAGGCATCCGTGTCCA...AACAGCTTTCTTGGCTCTGTTTTGTGTGTGTGTGTGTGTGTGTGTGCTTTTTGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000022702.13
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR GCA 90 bp ATGTATGGCATCTGCAAGGTGAAGAACATCGACCTCAAGTTCAAAATCATCGTCTGGACACGGATGCCTTaGAGGGCGGCCACTCTGCAT +
Preference number: 4 (lower is better)
Translates to: MYGICKVKNIDLKFKIIVWTRMP*RAATLH
Trigger: ATGCAGAGTGGCCGCCCTGCAAGGCATCCGTGTCCA...GACGATGATTTTGAACTTGAGGTCGATGTTCTTCACCTTGCAGATGCCATACAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000171767.8
CDS-3UTR GCA 90 bp TTTCTCTTTTGCTACACAATGGCTTGTTTTGGTCTAGAAACTCATTTCTCCATCCCCGCTGGACACGGATaGCTTGCAGGGCGGCCACTC +
Preference number: 4 (lower is better)
Translates to: FLFCYTMACFGLETHFSIPAGHG*LAGRPL
Trigger: GAGTGGCCGCCCTGCAAGGCATCCGTGTCCAGCGGG...GATGGAGAAATGAGTTTCTAGACCAAAACAAGCCATTGTGTAGCAAAAGAGAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR GCA 90 bp GAGGGAGACTCCCCACAAGAGTGGCACTGGTACACTTTCAGCTTCTATGTGGTAGGCAGAGTGACAGGCTaGAATCTCTATGATTCTGTC +
Preference number: 4 (lower is better)
Translates to: EGDSPQEWHWYTFSFYVVGRVTG*NLYDSV
Trigger: GACAGAATCATAGAGATTGCAGCCTGTCACTCTGCC...TACCACATAGAAGCTGAAAGTGTACCAGTGCCACTCTTGTGGGGAGTCTCCCTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000022702.13
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR CCA 90 bp AAAGGAGGTGAACACAGTCCCCACCAACCTACCCACAAAGCTATTTACAGTTGGTGTCCACAACAGCCATaGAGCACATCTGCCCACATG +
Preference number: 4 (lower is better)
Translates to: KGGEHSPHQPTHKAIYSWCPQQP*STSAHM
Trigger: CATGTGGGCAGATGTGCTCCATGGCTGTTGTGGACA...CCAACTGTAAATAGCTTTGTGGGTAGGTTGGTGGGGACTGTGTTCACCTCCTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000022702.13
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR CCA 90 bp TTTATCTTTGCTGGGGTGAAATGGGAAGGCTTAAGCATTCTTTTCCACATTCAGCCACAGGCAACCCGCTaGACACGGATGCCTTGCAGG +
Preference number: 4 (lower is better)
Translates to: FIFAGVKWEGLSILFHIQPQATR*TRMPCR
Trigger: CCTGCAAGGCATCCGTGTCCAGCGGGTTGCCTGTGG...CTGAATGTGGAAAAGAATGCTTAAGCCTTCCCATTTCACCCCAGCAAAGATAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000022702.13
ENSMUST00000110952.10
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR CCA 90 bp TTGAGCAACAAAACAGATCCAGCCTACATTCAGATCACAGATCACAACACCATGTCGGCCACAGTGAGGTaGTCGTCAGGTTCCACGGAG +
Preference number: 4 (lower is better)
Translates to: LSNKTDPAYIQITDHNTMSATVR*SSGSTE
Trigger: CTCCGTGGAACCTGACGACCACCTCACTGTGGCCGA...CATGGTGTTGTGATCTGTGATCTGAATGTAGGCTGGATCTGTTTTGTTGCTCAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000171767.8
CDS-3UTR TCA 90 bp TGGGCCTACCCTGAAAGAACAGGACACACAGGTATGAAATCAGAGACTGACAGCAGATCCTACTTGCCCTaGGTTATTATAACCCCAGGC +
Preference number: 4 (lower is better)
Translates to: WAYPERTGHTGMKSETDSRSYLP*VIITPG
Trigger: GCCTGGGGTTATAATAACTCAGGGCAAGTAGGATCT...GCTGTCAGTCTCTGATTTCATACCTGTGTGTCCTGTTCTTTCAGGGTAGGCCCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000022702.13
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR TCA 90 bp ACTCCCCACAAGAGTGGCACTGGTACACTTTCAGCTTCTATGTGGTATATCATATCGGTGCAGCAGAAGTaGGTGTGGTGTGGAAGGATC +
Preference number: 4 (lower is better)
Translates to: TPHKSGTGTLSASMWYIISVQQK*VWCGRI
Trigger: GATCCTTCCACACCACACTCACTTCTGCTGCACCGA...TATGATATACCACATAGAAGCTGAAAGTGTACCAGTGCCACTCTTGTGGGGAGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000022702.13
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR TCA 90 bp CAGAGACTGACAGCATGTAAGAGACCTGTACAAGCTCATACCAGACAGATCCCTCATCAACCAGAAACTTaGGGTCTGCAGTGTCAGGGT +
Preference number: 4 (lower is better)
Translates to: QRLTACKRPVQAHTRQIPHQPET*GLQCQG
Trigger: ACCCTGACACTGCAGACCTCAAGTTTCTGGTTGATG...AGGGATCTGTCTGGTATGAGCTTGTACAGGTCTCTTACATGCTGTCAGTCTCTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000022702.13
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR TCA 90 bp TGGGAGAGGGAGACTCCCCACAAGAGTGGCACTGGTACACTTTCAGCTTCTATGCCTCAGGAGATAGGCTaGTGTTATCTGTGTATAGAT +
Preference number: 4 (lower is better)
Translates to: WERETPHKSGTGTLSASMPQEIG*CYLCID
Trigger: ATCTATACACAGATAACATCAGCCTATCTCCTGAGG...CATAGAAGCTGAAAGTGTACCAGTGCCACTCTTGTGGGGAGTCTCCCTCTCCCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000022702.13
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR TCA 90 bp CTGGGAGAGGGAGACTCCCCACAAGAGTGGCACTGGTACACTTTCAGCTTCTATCCTCAGGAGATAGGCTaGTGTTATCTGTGTATAGAT +
Preference number: 4 (lower is better)
Translates to: LGEGDSPQEWHWYTFSFYPQEIG*CYLCID
Trigger: ATCTATACACAGATAACATCAGCCTATCTCCTGAGG...ATAGAAGCTGAAAGTGTACCAGTGCCACTCTTGTGGGGAGTCTCCCTCTCCCAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000022702.13
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR GCA 90 bp CTGGGAGAGGGAGACTCCCCACAAGAGTGGCACTGGTACACTTTCAGCTTCTATAGCCACTGCAGTTTGTaGCAAGCACAAAAATCTCAT +
Preference number: 4 (lower is better)
Translates to: LGEGDSPQEWHWYTFSFYSHCSL*QAQKSH
Trigger: ATGAGATTTTTGTGCTTGGCACAAACTGCAGTGGCT...ATAGAAGCTGAAAGTGTACCAGTGCCACTCTTGTGGGGAGTCTCCCTCTCCCAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000022702.13
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR GCA 90 bp AGAGTGGCACTGGTACACTTTCAGCTTCTATGTGGTATATCATACCCAGTTGGACCCCCAGACAGCCACTaGAGTTTGTGCCAAGCACAA +
Preference number: 4 (lower is better)
Translates to: RVALVHFQLLCGISYPVGPPDSH*SLCQAQ
Trigger: TTGTGCTTGGCACAAACTGCAGTGGCTGTCTGGGGG...TCCAACTGGGTATGATATACCACATAGAAGCTGAAAGTGTACCAGTGCCACTCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000022702.13
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR GCA 90 bp TTTATCTTTGCTGGGGTGAAATGGGAAGGCTTAAGCATTCTTTTCCACATTCAGTGGACACGGATGCCTTaGAGGGCGGCCACTCTGCAT +
Preference number: 4 (lower is better)
Translates to: FIFAGVKWEGLSILFHIQWTRMP*RAATLH
Trigger: ATGCAGAGTGGCCGCCCTGCAAGGCATCCGTGTCCA...CTGAATGTGGAAAAGAATGCTTAAGCCTTCCCATTTCACCCCAGCAAAGATAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000022702.13
ENSMUST00000110952.10
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR GCA 90 bp TACTTGACAGCAGCAGAGAGCAGAGCAATAGCATTCTCCTCACAGATTCCTTGCGGCAGAGTGACAGGCTaGAATCTCTATGATTCCGCT +
Preference number: 4 (lower is better)
Translates to: YLTAAESRAIAFSSQIPCGRVTG*NLYDSA
Trigger: AGCGGAATCATAGAGATTGCAGCCTGTCACTCTGCC...GCAAGGAATCTGTGAGGAGAATGCTATTGCTCTGCTCTCTGCTGCTGTCAAGTA
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000163797.2
ENSMUST00000164298.8
CDS-3UTR CCA 90 bp GTGGCACTGGTACACTTTCAGCTTCTATGTGGTATATCATACCCAGTTGGAGCCCTTCGGGGAATGGGCTaGTTAGCTGTTGATCCAGAT +
Preference number: 4 (lower is better)
Translates to: VALVHFQLLCGISYPVGALRGMG*LAVDPD
Trigger: ATCTGGATCAACAGCTAACCAGCCCATTCCCCGAAG...GGCTCCAACTGGGTATGATATACCACATAGAAGCTGAAAGTGTACCAGTGCCAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000022702.13
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR CCA 90 bp TACTTGACAGCAGCAGAGAGCAGAGCAATAGCATTCTCCTCACAGATTCCTTGCCTTCGGGGAATGGGCTaGTTAGCTGTTGATCCAGAT +
Preference number: 4 (lower is better)
Translates to: YLTAAESRAIAFSSQIPCLRGMG*LAVDPD
Trigger: ATCTGGATCAACAGCTAACCAGCCCATTCCCCGAAG...GCAAGGAATCTGTGAGGAGAATGCTATTGCTCTGCTCTCTGCTGCTGTCAAGTA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000164298.8
CDS-3UTR CCA 90 bp GACTCCCCACAAGAGTGGCACTGGTACACTTTCAGCTTCTATGTGGTATATCATTGTCCACAACAGCCATaGAGCACATCTGCCCACATG +
Preference number: 4 (lower is better)
Translates to: DSPQEWHWYTFSFYVVYHCPQQP*STSAHM
Trigger: CATGTGGGCAGATGTGCTCCATGGCTGTTGTGGACA...ATGATATACCACATAGAAGCTGAAAGTGTACCAGTGCCACTCTTGTGGGGAGTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000022702.13
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR CCA 90 bp ATTTATCTTTGCTGGGGTGAAATGGGAAGGCTTAAGCATTCTTTTCCACATTCACCACAGGCAACCCGCTaGACACGGATGCCTTGCAGG +
Preference number: 4 (lower is better)
Translates to: IYLCWGEMGRLKHSFPHSPQATR*TRMPCR
Trigger: CCTGCAAGGCATCCGTGTCCAGCGGGTTGCCTGTGG...TGAATGTGGAAAAGAATGCTTAAGCCTTCCCATTTCACCCCAGCAAAGATAAAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000022702.13
ENSMUST00000110952.10
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR TCA 90 bp ACTCCCCACAAGAGTGGCACTGGTACACTTTCAGCTTCTATGTGGTATATCATACAGGGCACTAAACCATaGTTCGTTGTCCCATTGCCC +
Preference number: 4 (lower is better)
Translates to: TPHKSGTGTLSASMWYIIQGTKP*FVVPLP
Trigger: GGGCAATGGGACAACGAATCATGGTTTAGTGCCCTG...TATGATATACCACATAGAAGCTGAAAGTGTACCAGTGCCACTCTTGTGGGGAGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000022702.13
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR TCA 90 bp GTGGCACTGGTACACTTTCAGCTTCTATGTGGTATATCATACCCAGTTGGAGCCAGATCCTACTTGCCCTaGGTTATTATAACCCCAGGC +
Preference number: 4 (lower is better)
Translates to: VALVHFQLLCGISYPVGARSYLP*VIITPG
Trigger: GCCTGGGGTTATAATAACTCAGGGCAAGTAGGATCT...GGCTCCAACTGGGTATGATATACCACATAGAAGCTGAAAGTGTACCAGTGCCAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000022702.13
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR TCA 90 bp TTGAGCAACAAAACAGATCCAGCCTACATTCAGATCACAGATCACAACACCATGGGGCTGGTTAGCTGTTaGTCCAGATCCTACTTGCCC +
Preference number: 4 (lower is better)
Translates to: LSNKTDPAYIQITDHNTMGLVSC*SRSYLP
Trigger: GGGCAAGTAGGATCTGGATCAACAGCTAACCAGCCC...CATGGTGTTGTGATCTGTGATCTGAATGTAGGCTGGATCTGTTTTGTTGCTCAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000171767.8
CDS-3UTR TCA 90 bp TATCTTTGCTGGGGTGAAATGGGAAGGCTTAAGCATTCTTTTCCACATTCAGGATCGGTGCAGCAGAAGTaGGTGTGGTGTGGAAGGATC +
Preference number: 4 (lower is better)
Translates to: YLCWGEMGRLKHSFPHSGSVQQK*VWCGRI
Trigger: GATCCTTCCACACCACACTCACTTCTGCTGCACCGA...TCCTGAATGTGGAAAAGAATGCTTAAGCCTTCCCATTTCACCCCAGCAAAGATA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000022702.13
ENSMUST00000110952.10
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR TCA 90 bp AACAAAAAGCACACACACACACACACACACACAAAACAGAGCCAAGAAAGCTGTTCGGTGCAGCAGAAGTaGGTGTGGTGTGGAAGGATC +
Preference number: 4 (lower is better)
Translates to: NKKHTHTHTHTKQSQESCSVQQK*VWCGRI
Trigger: GATCCTTCCACACCACACTCACTTCTGCTGCACCGA...ACAGCTTTCTTGGCTCTGTTTTGTGTGTGTGTGTGTGTGTGTGTGCTTTTTGTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000022702.13
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR TCA 90 bp GACTCCCCACAAGAGTGGCACTGGTACACTTTCAGCTTCTATGTGGTATATCATCATCAACCAGAAACTTaGGGTCTGCAGTGTCAGGGT +
Preference number: 4 (lower is better)
Translates to: DSPQEWHWYTFSFYVVYHHQPET*GLQCQG
Trigger: ACCCTGACACTGCAGACCTCAAGTTTCTGGTTGATG...ATGATATACCACATAGAAGCTGAAAGTGTACCAGTGCCACTCTTGTGGGGAGTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000022702.13
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR TCA 90 bp GAGGGAGACTCCCCACAAGAGTGGCACTGGTACACTTTCAGCTTCTATGTGGTACATTTCTGCAAAGCCTaGCGTTTGTGTTACTACAGT +
Preference number: 4 (lower is better)
Translates to: EGDSPQEWHWYTFSFYVVHFCKA*RLCYYS
Trigger: ACTGTAGTAACACAAACGTCAGGCTTTGCAGAAATG...TACCACATAGAAGCTGAAAGTGTACCAGTGCCACTCTTGTGGGGAGTCTCCCTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000022702.13
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR GCA 90 bp CACAAGAGTGGCACTGGTACACTTTCAGCTTCTATGTGGTATATCATACCCAGTCTTCATTGCCAGCACTaGCGAAGACACAAGCCTGAC +
Preference number: 4 (lower is better)
Translates to: HKSGTGTLSASMWYIIPSLHCQH*RRHKPD
Trigger: GTCAGGCTTGTGTCTTCGGCAGTGCTGGCAATGAAG...ACTGGGTATGATATACCACATAGAAGCTGAAAGTGTACCAGTGCCACTCTTGTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000022702.13
ENSMUST00000164822.8
ENSMUST00000167401.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR GCA 90 bp ACACACACACACACACAAAACAGAGCCAAGAAAGCTGTTAGCGAGTTACTCATACCCCCAGACAGCCACTaGAGTTTGTGCCAAGCACAA +
Preference number: 4 (lower is better)
Translates to: THTHTQNRAKKAVSELLIPPDSH*SLCQAQ
Trigger: TTGTGCTTGGCACAAACTGCAGTGGCTGTCTGGGGG...TATGAGTAACTCGCTAACAGCTTTCTTGGCTCTGTTTTGTGTGTGTGTGTGTGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000022702.13
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR GCA 90 bp TATCTTTGCTGGGGTGAAATGGGAAGGCTTAAGCATTCTTTTCCACATTCAGGACCCCCAGACAGCCACTaGAGTTTGTGCCAAGCACAA +
Preference number: 4 (lower is better)
Translates to: YLCWGEMGRLKHSFPHSGPPDSH*SLCQAQ
Trigger: TTGTGCTTGGCACAAACTGCAGTGGCTGTCTGGGGG...TCCTGAATGTGGAAAAGAATGCTTAAGCCTTCCCATTTCACCCCAGCAAAGATA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 6 transcripts:
ENSMUST00000022702.13
ENSMUST00000110952.10
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR GCA 90 bp CTGATGTTATCTGTGTATAGATACTCCAGGAAAGCTCGGAACACAGGATACGAACCCCCAGACAGCCACTaGAGTTTGTGCCAAGCACAA +
Preference number: 4 (lower is better)
Translates to: LMLSVYRYSRKARNTGYEPPDSH*SLCQAQ
Trigger: TTGTGCTTGGCACAAACTGCAGTGGCTGTCTGGGGG...TTCGTATCCTGTGTTCCGAGCTTTCCTGGAGTATCTATACACAGATAACATCAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000163797.2
ENSMUST00000164298.8
CDS-3UTR GCA 90 bp TACTTGACAGCAGCAGAGAGCAGAGCAATAGCATTCTCCTCACAGATTCCTTGCGATTCGTTGTCCCATTaGCCAGCTGGCTATAAGCAT +
Preference number: 4 (lower is better)
Translates to: YLTAAESRAIAFSSQIPCDSLSH*PAGYKH
Trigger: ATGCTTATAGCCAGCTGGGCAATGGGACAACGAATC...GCAAGGAATCTGTGAGGAGAATGCTATTGCTCTGCTCTCTGCTGCTGTCAAGTA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000164298.8
CDS-3UTR GCA 90 bp TTACAGTTGGCACGTGCTGGGAGAGGGAGACTCCCCACAAGAGTGGCACTGGTAATAACTACTTTATTCTaGAAGCATCCAGTGACTCTT +
Preference number: 4 (lower is better)
Translates to: LQLARAGRGRLPTRVALVITTLF*KHPVTL
Trigger: AAGAGTCACTGGATGCTTGCAGAATAAAGTAGTTAT...TACCAGTGCCACTCTTGTGGGGAGTCTCCCTCTCCCAGCACGTGCCAACTGTAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000022702.13
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR CCA 90 bp CACACACACACACACACACAAAACAGAGCCAAGAAAGCTGTTAGCGAGTTACTCCTTCGGGGAATGGGCTaGTTAGCTGTTGATCCAGAT +
Preference number: 4 (lower is better)
Translates to: HTHTHTQNRAKKAVSELLLRGMG*LAVDPD
Trigger: ATCTGGATCAACAGCTAACCAGCCCATTCCCCGAAG...GAGTAACTCGCTAACAGCTTTCTTGGCTCTGTTTTGTGTGTGTGTGTGTGTGTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000022702.13
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR CCA 90 bp GGAGATAGGCTGATGTTATCTGTGTATAGATACTCCAGGAAAGCTCGGAACACATGTCCACAACAGCCATaGAGCACATCTGCCCACATG +
Preference number: 4 (lower is better)
Translates to: GDRLMLSVYRYSRKARNTCPQQP*STSAHM
Trigger: CATGTGGGCAGATGTGCTCCATGGCTGTTGTGGACA...TGTGTTCCGAGCTTTCCTGGAGTATCTATACACAGATAACATCAGCCTATCTCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000163797.2
ENSMUST00000164298.8
CDS-3UTR CCA 90 bp TTATTTATCTTTGCTGGGGTGAAATGGGAAGGCTTAAGCATTCTTTTCCACATTCCACTCTGCATGGGGTaGGCTGGTTGCCACTGCTGC +
Preference number: 4 (lower is better)
Translates to: LFIFAGVKWEGLSILFHIPLCMG*AGCHCC
Trigger: GCAGCAGTGGCAACCAGCCCACCCCATGCAGAGTGG...AATGTGGAAAAGAATGCTTAAGCCTTCCCATTTCACCCCAGCAAAGATAAATAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 6 transcripts:
ENSMUST00000022702.13
ENSMUST00000110952.10
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR CCA 90 bp GTGAACACAGTCCCCACCAACCTACCCACAAAGCTATTTACAGTTGGCACGTGCAACTCTTCTAAGTCCTaGGCATCATACTTGACAGCA +
Preference number: 4 (lower is better)
Translates to: VNTVPTNLPTKLFTVGTCNSSKS*ASYLTA
Trigger: TGCTGTCAAGTATGATGCCCAGGACTTAGAAGAGTT...GCACGTGCCAACTGTAAATAGCTTTGTGGGTAGGTTGGTGGGGACTGTGTTCAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000022702.13
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR CCA 90 bp GAGGGAGACTCCCCACAAGAGTGGCACTGGTACACTTTCAGCTTCTATGTGGTAAACTCTTCTAAGTCCTaGGCATCATACTTGACAGCA +
Preference number: 4 (lower is better)
Translates to: EGDSPQEWHWYTFSFYVVNSSKS*ASYLTA
Trigger: TGCTGTCAAGTATGATGCCCAGGACTTAGAAGAGTT...TACCACATAGAAGCTGAAAGTGTACCAGTGCCACTCTTGTGGGGAGTCTCCCTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000022702.13
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR TCA 90 bp ACACACACACACACACAAAACAGAGCCAAGAAAGCTGTTAGCGAGTTACTCATACAGGGCACTAAACCATaGTTCGTTGTCCCATTGCCC +
Preference number: 4 (lower is better)
Translates to: THTHTQNRAKKAVSELLIQGTKP*FVVPLP
Trigger: GGGCAATGGGACAACGAATCATGGTTTAGTGCCCTG...TATGAGTAACTCGCTAACAGCTTTCTTGGCTCTGTTTTGTGTGTGTGTGTGTGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000022702.13
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR TCA 90 bp CTGATGTTATCTGTGTATAGATACTCCAGGAAAGCTCGGAACACAGGATACGAACAGGGCACTAAACCATaGTTCGTTGTCCCATTGCCC +
Preference number: 4 (lower is better)
Translates to: LMLSVYRYSRKARNTGYEQGTKP*FVVPLP
Trigger: GGGCAATGGGACAACGAATCATGGTTTAGTGCCCTG...TTCGTATCCTGTGTTCCGAGCTTTCCTGGAGTATCTATACACAGATAACATCAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000164298.8
CDS-3UTR TCA 90 bp TATCTTTGCTGGGGTGAAATGGGAAGGCTTAAGCATTCTTTTCCACATTCAGGACAGGGCACTAAACCATaGTTCGTTGTCCCATTGCCC +
Preference number: 4 (lower is better)
Translates to: YLCWGEMGRLKHSFPHSGQGTKP*FVVPLP
Trigger: GGGCAATGGGACAACGAATCATGGTTTAGTGCCCTG...TCCTGAATGTGGAAAAGAATGCTTAAGCCTTCCCATTTCACCCCAGCAAAGATA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000022702.13
ENSMUST00000110952.10
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR TCA 90 bp GACTCCCCACAAGAGTGGCACTGGTACACTTTCAGCTTCTATGTGGTATATCATAGATCCTACTTGCCCTaGGTTATTATAACCCCAGGC +
Preference number: 4 (lower is better)
Translates to: DSPQEWHWYTFSFYVVYHRSYLP*VIITPG
Trigger: GCCTGGGGTTATAATAACTCAGGGCAAGTAGGATCT...ATGATATACCACATAGAAGCTGAAAGTGTACCAGTGCCACTCTTGTGGGGAGTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000022702.13
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR TCA 90 bp TTTATCTTTGCTGGGGTGAAATGGGAAGGCTTAAGCATTCTTTTCCACATTCAGGGGCTGGTTAGCTGTTaGTCCAGATCCTACTTGCCC +
Preference number: 4 (lower is better)
Translates to: FIFAGVKWEGLSILFHIQGLVSC*SRSYLP
Trigger: GGGCAAGTAGGATCTGGATCAACAGCTAACCAGCCC...CTGAATGTGGAAAAGAATGCTTAAGCCTTCCCATTTCACCCCAGCAAAGATAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 6 transcripts:
ENSMUST00000022702.13
ENSMUST00000110952.10
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR TCA 90 bp AGGGAGACTCCCCACAAGAGTGGCACTGGTACACTTTCAGCTTCTATGTGGTATAGGCTGCAATCTCTATaGTTCTGTCCTTTTCCACAA +
Preference number: 4 (lower is better)
Translates to: RETPHKSGTGTLSASMWYRLQSL*FCPFPQ
Trigger: TTGTGGAAAAGGACAGAATCATAGAGATTGCAGCCT...ATACCACATAGAAGCTGAAAGTGTACCAGTGCCACTCTTGTGGGGAGTCTCCCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000022702.13
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR TCA 90 bp AGACCTGTACAAGCTCATACCAGACAGATCCCTGGTCAGAGAAAGGAGGTGAACAGGCTGCAATCTCTATaGTTCTGTCCTTTTCCACAA +
Preference number: 4 (lower is better)
Translates to: RPVQAHTRQIPGQRKEVNRLQSL*FCPFPQ
Trigger: TTGTGGAAAAGGACAGAATCATAGAGATTGCAGCCT...GTTCACCTCCTTTCTCTGACCAGGGATCTGTCTGGTATGAGCTTGTACAGGTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000022702.13
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR TCA 90 bp TTTATCTTTGCTGGGGTGAAATGGGAAGGCTTAAGCATTCTTTTCCACATTCAGTCGGTGCAGCAGAAGTaGGTGTGGTGTGGAAGGATC +
Preference number: 4 (lower is better)
Translates to: FIFAGVKWEGLSILFHIQSVQQK*VWCGRI
Trigger: GATCCTTCCACACCACACTCACTTCTGCTGCACCGA...CTGAATGTGGAAAAGAATGCTTAAGCCTTCCCATTTCACCCCAGCAAAGATAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000022702.13
ENSMUST00000110952.10
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR TCA 90 bp TATGTATGGCATCTGCAAGGTGAAGAACATCGACCTCAAGTTCAAAATCATCGTTCGGTGCAGCAGAAGTaGGTGTGGTGTGGAAGGATC +
Preference number: 4 (lower is better)
Translates to: YVWHLQGEEHRPQVQNHRSVQQK*VWCGRI
Trigger: GATCCTTCCACACCACACTCACTTCTGCTGCACCGA...ACGATGATTTTGAACTTGAGGTCGATGTTCTTCACCTTGCAGATGCCATACATA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000171767.8
CDS-3UTR TCA 90 bp AATCAGAGACTGACAGCATGTAAGAGACCTGTACAAGCTCATACCAGACAGATCCATCAACCAGAAACTTaGGGTCTGCAGTGTCAGGGT +
Preference number: 4 (lower is better)
Translates to: NQRLTACKRPVQAHTRQIHQPET*GLQCQG
Trigger: ACCCTGACACTGCAGACCTCAAGTTTCTGGTTGATG...GATCTGTCTGGTATGAGCTTGTACAGGTCTCTTACATGCTGTCAGTCTCTGATT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000022702.13
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR GCA 90 bp TATCTTTGCTGGGGTGAAATGGGAAGGCTTAAGCATTCTTTTCCACATTCAGGACTTCATTGCCAGCACTaGCGAAGACACAAGCCTGAC +
Preference number: 4 (lower is better)
Translates to: YLCWGEMGRLKHSFPHSGLHCQH*RRHKPD
Trigger: GTCAGGCTTGTGTCTTCGGCAGTGCTGGCAATGAAG...TCCTGAATGTGGAAAAGAATGCTTAAGCCTTCCCATTTCACCCCAGCAAAGATA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000022702.13
ENSMUST00000110952.10
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR GCA 90 bp CTCCCCACAAGAGTGGCACTGGTACACTTTCAGCTTCTATGTGGTATATCATACGATTCGTTGTCCCATTaGCCAGCTGGCTATAAGCAT +
Preference number: 4 (lower is better)
Translates to: LPTRVALVHFQLLCGISYDSLSH*PAGYKH
Trigger: ATGCTTATAGCCAGCTGGGCAATGGGACAACGAATC...GTATGATATACCACATAGAAGCTGAAAGTGTACCAGTGCCACTCTTGTGGGGAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000022702.13
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR GCA 90 bp GACTCCCCACAAGAGTGGCACTGGTACACTTTCAGCTTCTATGTGGTATATCATGATTCGTTGTCCCATTaGCCAGCTGGCTATAAGCAT +
Preference number: 4 (lower is better)
Translates to: DSPQEWHWYTFSFYVVYHDSLSH*PAGYKH
Trigger: ATGCTTATAGCCAGCTGGGCAATGGGACAACGAATC...ATGATATACCACATAGAAGCTGAAAGTGTACCAGTGCCACTCTTGTGGGGAGTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000022702.13
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR GCA 90 bp GAGGGAGACTCCCCACAAGAGTGGCACTGGTACACTTTCAGCTTCTATGTGGTAGCACATCTGCCCACATaGTATGTTCATAACTACTTT +
Preference number: 4 (lower is better)
Translates to: EGDSPQEWHWYTFSFYVVAHLPT*YVHNYF
Trigger: AAAGTAGTTATGAACATAGCATGTGGGCAGATGTGC...TACCACATAGAAGCTGAAAGTGTACCAGTGCCACTCTTGTGGGGAGTCTCCCTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000022702.13
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR GCA 90 bp GACTCCCCACAAGAGTGGCACTGGTACACTTTCAGCTTCTATGTGGTATATCATGGCAGAGTGACAGGCTaGAATCTCTATGATTCTGTC +
Preference number: 4 (lower is better)
Translates to: DSPQEWHWYTFSFYVVYHGRVTG*NLYDSV
Trigger: GACAGAATCATAGAGATTGCAGCCTGTCACTCTGCC...ATGATATACCACATAGAAGCTGAAAGTGTACCAGTGCCACTCTTGTGGGGAGTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000022702.13
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR GCA 90 bp GGAGATAGGCTGATGTTATCTGTGTATAGATACTCCAGGAAAGCTCGGAACACAGGCAGAGTGACAGGCTaGAATCTCTATGATTCCGCT +
Preference number: 4 (lower is better)
Translates to: GDRLMLSVYRYSRKARNTGRVTG*NLYDSA
Trigger: AGCGGAATCATAGAGATTGCAGCCTGTCACTCTGCC...TGTGTTCCGAGCTTTCCTGGAGTATCTATACACAGATAACATCAGCCTATCTCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000163797.2
ENSMUST00000164298.8
CDS-3UTR CCA 90 bp TTATTTATCTTTGCTGGGGTGAAATGGGAAGGCTTAAGCATTCTTTTCCACATTTCGGCCACAGTGAGGTaGTCGTCAGGTTCCACGGAG +
Preference number: 4 (lower is better)
Translates to: LFIFAGVKWEGLSILFHISATVR*SSGSTE
Trigger: CTCCGTGGAACCTGACGACCACCTCACTGTGGCCGA...AATGTGGAAAAGAATGCTTAAGCCTTCCCATTTCACCCCAGCAAAGATAAATAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000022702.13
ENSMUST00000110952.10
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR CCA 90 bp TTTCTCTTTTGCTACACAATGGCTTGTTTTGGTCTAGAAACTCATTTCTCCATCTCGGCCACAGTGAGGTaGTCGTCAGGTTCCACGGAG +
Preference number: 4 (lower is better)
Translates to: FLFCYTMACFGLETHFSISATVR*SSGSTE
Trigger: CTCCGTGGAACCTGACGACCACCTCACTGTGGCCGA...GATGGAGAAATGAGTTTCTAGACCAAAACAAGCCATTGTGTAGCAAAAGAGAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR CCA 90 bp GTGAACACAGTCCCCACCAACCTACCCACAAAGCTATTTACAGTTGGCACGTGCTTCTTTAGAAGATCGTaGTCCATTTCTGCAAAGCCT +
Preference number: 4 (lower is better)
Translates to: VNTVPTNLPTKLFTVGTCFFRRS*SISAKP
Trigger: AGGCTTTGCAGAAATGGACCACGATCTTCTAAAGAA...GCACGTGCCAACTGTAAATAGCTTTGTGGGTAGGTTGGTGGGGACTGTGTTCAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000022702.13
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR TCA 90 bp TATGTATGGCATCTGCAAGGTGAAGAACATCGACCTCAAGTTCAAAATCATCGTCAGGGCACTAAACCATaGTTCGTTGTCCCATTGCCC +
Preference number: 4 (lower is better)
Translates to: YVWHLQGEEHRPQVQNHRQGTKP*FVVPLP
Trigger: GGGCAATGGGACAACGAATCATGGTTTAGTGCCCTG...ACGATGATTTTGAACTTGAGGTCGATGTTCTTCACCTTGCAGATGCCATACATA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000171767.8
CDS-3UTR TCA 90 bp CTTGACAGCAGCAGAGAGCAGAGCAATAGCATTCTCCTCACAGATTCCTTGCTTCACAGGCGACCTCAATaGCTTGTTTGTTTGACAAAT +
Preference number: 4 (lower is better)
Translates to: LDSSREQSNSILLTDSLLHRRPQ*LVCLTN
Trigger: ATTTGTCAAACAAACAAGTCATTGAGGTCGCCTGTG...AAGCAAGGAATCTGTGAGGAGAATGCTATTGCTCTGCTCTCTGCTGCTGTCAAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000164298.8
CDS-3UTR TCA 90 bp CGAGTTACTCATAAGCATTGGGCCTACCCTGAAAGAACAGGACACACAGGTATGCACAGGCGACCTCAATaGCTTGTTTGTTTGACAAAT +
Preference number: 4 (lower is better)
Translates to: RVTHKHWAYPERTGHTGMHRRPQ*LVCLTN
Trigger: ATTTGTCAAACAAACAAGTCATTGAGGTCGCCTGTG...CATACCTGTGTGTCCTGTTCTTTCAGGGTAGGCCCAATGCTTATGAGTAACTCG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000022702.13
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR TCA 90 bp GGCATCTGCAAGGTGAAGAACATCGACCTCAAGTTCAAAATCATCGTCACTGCCCACAGGCGACCTCAATaGCTTGTTTGTTTGACAAAT +
Preference number: 4 (lower is better)
Translates to: GICKVKNIDLKFKIIVTAHRRPQ*LVCLTN
Trigger: ATTTGTCAAACAAACAAGTCATTGAGGTCGCCTGTG...GGCAGTGACGATGATTTTGAACTTGAGGTCGATGTTCTTCACCTTGCAGATGCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000171767.8
CDS-3UTR TCA 90 bp ATGTATGGCATCTGCAAGGTGAAGAACATCGACCTCAAGTTCAAAATCATCGTCCATCAACCAGAAACTTaGGGTCTGCAGTGTCAGGGT +
Preference number: 4 (lower is better)
Translates to: MYGICKVKNIDLKFKIIVHQPET*GLQCQG
Trigger: ACCCTGACACTGCAGACCTCAAGTTTCTGGTTGATG...GACGATGATTTTGAACTTGAGGTCGATGTTCTTCACCTTGCAGATGCCATACAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000171767.8
CDS-3UTR GCA 90 bp TTTATCTTTGCTGGGGTGAAATGGGAAGGCTTAAGCATTCTTTTCCACATTCAGCTTCATTGCCAGCACTaGCGAAGACACAAGCCTGAC +
Preference number: 4 (lower is better)
Translates to: FIFAGVKWEGLSILFHIQLHCQH*RRHKPD
Trigger: GTCAGGCTTGTGTCTTCGGCAGTGCTGGCAATGAAG...CTGAATGTGGAAAAGAATGCTTAAGCCTTCCCATTTCACCCCAGCAAAGATAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000022702.13
ENSMUST00000110952.10
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR GCA 90 bp AACAGAGCCAAGAAAGCTGTTAGCGAGTTACTCATAAGCATTGGGCCTACCCTGAGCCACTGCAGTTTGTaGCAAGCACAAAAATCTCAT +
Preference number: 4 (lower is better)
Translates to: NRAKKAVSELLISIGPTLSHCSL*QAQKSH
Trigger: ATGAGATTTTTGTGCTTGGCACAAACTGCAGTGGCT...CAGGGTAGGCCCAATGCTTATGAGTAACTCGCTAACAGCTTTCTTGGCTCTGTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000022702.13
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR GCA 90 bp TGGTCTAGAAACTCATTTCTCCATCACAATGCTACCCATGAAATGTGTTCCTTTCCCCCAGACAGCCACTaGAGTTTGTGCCAAGCACAA +
Preference number: 4 (lower is better)
Translates to: WSRNSFLHHNATHEMCSFPPDSH*SLCQAQ
Trigger: TTGTGCTTGGCACAAACTGCAGTGGCTGTCTGGGGG...AAAGGAACACATTTCATGGGTAGCATTGTGATGGAGAAATGAGTTTCTAGACCA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR GCA 90 bp AGAGTGGCACTGGTACACTTTCAGCTTCTATGTGGTATATCATACCCAGTTGGAGGCAGAGTGACAGGCTaGAATCTCTATGATTCTGTC +
Preference number: 4 (lower is better)
Translates to: RVALVHFQLLCGISYPVGGRVTG*NLYDSV
Trigger: GACAGAATCATAGAGATTGCAGCCTGTCACTCTGCC...TCCAACTGGGTATGATATACCACATAGAAGCTGAAAGTGTACCAGTGCCACTCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000022702.13
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR CCA 90 bp TATGTATGGCATCTGCAAGGTGAAGAACATCGACCTCAAGTTCAAAATCATCGTTGTCCACAACAGCCATaGAGCACATCTGCCCACATG +
Preference number: 4 (lower is better)
Translates to: YVWHLQGEEHRPQVQNHRCPQQP*STSAHM
Trigger: CATGTGGGCAGATGTGCTCCATGGCTGTTGTGGACA...ACGATGATTTTGAACTTGAGGTCGATGTTCTTCACCTTGCAGATGCCATACATA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000171767.8
CDS-3UTR CCA 90 bp AGGGAGACTCCCCACAAGAGTGGCACTGGTACACTTTCAGCTTCTATGTGGTATTTCTTTAGAAGATCGTaGTCCATTTCTGCAAAGCCT +
Preference number: 4 (lower is better)
Translates to: RETPHKSGTGTLSASMWYFFRRS*SISAKP
Trigger: AGGCTTTGCAGAAATGGACCACGATCTTCTAAAGAA...ATACCACATAGAAGCTGAAAGTGTACCAGTGCCACTCTTGTGGGGAGTCTCCCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000022702.13
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR TCA 90 bp TATCTTTGCTGGGGTGAAATGGGAAGGCTTAAGCATTCTTTTCCACATTCAGGACCGAAGACACAAGCCTaGCGAATCAACTGTAACTCT +
Preference number: 4 (lower is better)
Translates to: YLCWGEMGRLKHSFPHSGPKTQA*RINCNS
Trigger: AGAGTTACAGTTGATTCGTCAGGCTTGTGTCTTCGG...TCCTGAATGTGGAAAAGAATGCTTAAGCCTTCCCATTTCACCCCAGCAAAGATA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000022702.13
ENSMUST00000110952.10
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR TCA 90 bp CTGATGTTATCTGTGTATAGATACTCCAGGAAAGCTCGGAACACAGGATACGAACCGAAGACACAAGCCTaGCGAATCAACTGTAACTCT +
Preference number: 4 (lower is better)
Translates to: LMLSVYRYSRKARNTGYEPKTQA*RINCNS
Trigger: AGAGTTACAGTTGATTCGTCAGGCTTGTGTCTTCGG...TTCGTATCCTGTGTTCCGAGCTTTCCTGGAGTATCTATACACAGATAACATCAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000163797.2
ENSMUST00000164298.8
CDS-3UTR TCA 90 bp ACAAAAAGCACACACACACACACACACACACAAAACAGAGCCAAGAAAGCTGTTAGATCCTACTTGCCCTaGGTTATTATAACCCCAGGC +
Preference number: 4 (lower is better)
Translates to: TKSTHTHTHTQNRAKKAVRSYLP*VIITPG
Trigger: GCCTGGGGTTATAATAACTCAGGGCAAGTAGGATCT...AACAGCTTTCTTGGCTCTGTTTTGTGTGTGTGTGTGTGTGTGTGTGCTTTTTGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000022702.13
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR TCA 90 bp CTGATGTTATCTGTGTATAGATACTCCAGGAAAGCTCGGAACACAGGATACGAAAGATCCTACTTGCCCTaGGTTATTATAACCCCAGGC +
Preference number: 4 (lower is better)
Translates to: LMLSVYRYSRKARNTGYERSYLP*VIITPG
Trigger: GCCTGGGGTTATAATAACTCAGGGCAAGTAGGATCT...TTCGTATCCTGTGTTCCGAGCTTTCCTGGAGTATCTATACACAGATAACATCAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000164298.8
CDS-3UTR TCA 90 bp TTGAGCAACAAAACAGATCCAGCCTACATTCAGATCACAGATCACAACACCATGAGATCCTACTTGCCCTaGGTTATTATAACCCCAGGC +
Preference number: 4 (lower is better)
Translates to: LSNKTDPAYIQITDHNTMRSYLP*VIITPG
Trigger: GCCTGGGGTTATAATAACTCAGGGCAAGTAGGATCT...CATGGTGTTGTGATCTGTGATCTGAATGTAGGCTGGATCTGTTTTGTTGCTCAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000171767.8
CDS-3UTR TCA 90 bp TTATTTATCTTTGCTGGGGTGAAATGGGAAGGCTTAAGCATTCTTTTCCACATTGGGCTGGTTAGCTGTTaGTCCAGATCCTACTTGCCC +
Preference number: 4 (lower is better)
Translates to: LFIFAGVKWEGLSILFHIGLVSC*SRSYLP
Trigger: GGGCAAGTAGGATCTGGATCAACAGCTAACCAGCCC...AATGTGGAAAAGAATGCTTAAGCCTTCCCATTTCACCCCAGCAAAGATAAATAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000022702.13
ENSMUST00000110952.10
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR TCA 90 bp AGAAAGGAGGTGAACACAGTCCCCACCAACCTACCCACAAAGCTATTTACAGTTAGGCTGCAATCTCTATaGTTCTGTCCTTTTCCACAA +
Preference number: 4 (lower is better)
Translates to: RKEVNTVPTNLPTKLFTVRLQSL*FCPFPQ
Trigger: TTGTGGAAAAGGACAGAATCATAGAGATTGCAGCCT...AACTGTAAATAGCTTTGTGGGTAGGTTGGTGGGGACTGTGTTCACCTCCTTTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000022702.13
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR TCA 90 bp TTATTTATCTTTGCTGGGGTGAAATGGGAAGGCTTAAGCATTCTTTTCCACATTTCGGTGCAGCAGAAGTaGGTGTGGTGTGGAAGGATC +
Preference number: 4 (lower is better)
Translates to: LFIFAGVKWEGLSILFHISVQQK*VWCGRI
Trigger: GATCCTTCCACACCACACTCACTTCTGCTGCACCGA...AATGTGGAAAAGAATGCTTAAGCCTTCCCATTTCACCCCAGCAAAGATAAATAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000022702.13
ENSMUST00000110952.10
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR TCA 90 bp TTTATCTTTGCTGGGGTGAAATGGGAAGGCTTAAGCATTCTTTTCCACATTCAGCATCAACCAGAAACTTaGGGTCTGCAGTGTCAGGGT +
Preference number: 4 (lower is better)
Translates to: FIFAGVKWEGLSILFHIQHQPET*GLQCQG
Trigger: ACCCTGACACTGCAGACCTCAAGTTTCTGGTTGATG...CTGAATGTGGAAAAGAATGCTTAAGCCTTCCCATTTCACCCCAGCAAAGATAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000022702.13
ENSMUST00000110952.10
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR TCA 90 bp GACTCCCCACAAGAGTGGCACTGGTACACTTTCAGCTTCTATGTGGTATATCATCCTCAGGAGATAGGCTaGTGTTATCTGTGTATAGAT +
Preference number: 4 (lower is better)
Translates to: DSPQEWHWYTFSFYVVYHPQEIG*CYLCID
Trigger: ATCTATACACAGATAACATCAGCCTATCTCCTGAGG...ATGATATACCACATAGAAGCTGAAAGTGTACCAGTGCCACTCTTGTGGGGAGTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000022702.13
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR TCA 90 bp CACACACACACACACACACAAAACAGAGCCAAGAAAGCTGTTAGCGAGTTACTCCATTTCTGCAAAGCCTaGCGTTTGTGTTACTACAGT +
Preference number: 4 (lower is better)
Translates to: HTHTHTQNRAKKAVSELLHFCKA*RLCYYS
Trigger: ACTGTAGTAACACAAACGTCAGGCTTTGCAGAAATG...GAGTAACTCGCTAACAGCTTTCTTGGCTCTGTTTTGTGTGTGTGTGTGTGTGTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000022702.13
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR GCA 90 bp ACACACACACACACACAAAACAGAGCCAAGAAAGCTGTTAGCGAGTTACTCATAGATTCGTTGTCCCATTaGCCAGCTGGCTATAAGCAT +
Preference number: 4 (lower is better)
Translates to: THTHTQNRAKKAVSELLIDSLSH*PAGYKH
Trigger: ATGCTTATAGCCAGCTGGGCAATGGGACAACGAATC...TATGAGTAACTCGCTAACAGCTTTCTTGGCTCTGTTTTGTGTGTGTGTGTGTGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000022702.13
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR GCA 90 bp TTGAGCAACAAAACAGATCCAGCCTACATTCAGATCACAGATCACAACACCATGGATTCGTTGTCCCATTaGCCAGCTGGCTATAAGCAT +
Preference number: 4 (lower is better)
Translates to: LSNKTDPAYIQITDHNTMDSLSH*PAGYKH
Trigger: ATGCTTATAGCCAGCTGGGCAATGGGACAACGAATC...CATGGTGTTGTGATCTGTGATCTGAATGTAGGCTGGATCTGTTTTGTTGCTCAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000171767.8
CDS-3UTR GCA 90 bp GAGGGAGACTCCCCACAAGAGTGGCACTGGTACACTTTCAGCTTCTATGTGGTAATAACTACTTTATTCTaGAAGCATCCAGTGACTCTT +
Preference number: 4 (lower is better)
Translates to: EGDSPQEWHWYTFSFYVVITTLF*KHPVTL
Trigger: AAGAGTCACTGGATGCTTGCAGAATAAAGTAGTTAT...TACCACATAGAAGCTGAAAGTGTACCAGTGCCACTCTTGTGGGGAGTCTCCCTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000022702.13
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR GCA 90 bp AAAGGAGGTGAACACAGTCCCCACCAACCTACCCACAAAGCTATTTACAGTTGGGCACATCTGCCCACATaGTATGTTCATAACTACTTT +
Preference number: 4 (lower is better)
Translates to: KGGEHSPHQPTHKAIYSWAHLPT*YVHNYF
Trigger: AAAGTAGTTATGAACATAGCATGTGGGCAGATGTGC...CCAACTGTAAATAGCTTTGTGGGTAGGTTGGTGGGGACTGTGTTCACCTCCTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000022702.13
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR GCA 90 bp GGCATCTGCAAGGTGAAGAACATCGACCTCAAGTTCAAAATCATCGTCACTGCCGCACATCTGCCCACATaGTATGTTCATAACTACTTT +
Preference number: 4 (lower is better)
Translates to: GICKVKNIDLKFKIIVTAAHLPT*YVHNYF
Trigger: AAAGTAGTTATGAACATAGCATGTGGGCAGATGTGC...GGCAGTGACGATGATTTTGAACTTGAGGTCGATGTTCTTCACCTTGCAGATGCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000171767.8
CDS-3UTR GCA 90 bp TATCTTTGCTGGGGTGAAATGGGAAGGCTTAAGCATTCTTTTCCACATTCAGGAGGCAGAGTGACAGGCTaGAATCTCTATGATTCTGTC +
Preference number: 4 (lower is better)
Translates to: YLCWGEMGRLKHSFPHSGGRVTG*NLYDSV
Trigger: GACAGAATCATAGAGATTGCAGCCTGTCACTCTGCC...TCCTGAATGTGGAAAAGAATGCTTAAGCCTTCCCATTTCACCCCAGCAAAGATA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000022702.13
ENSMUST00000110952.10
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR GCA 90 bp AACAAAAAGCACACACACACACACACACACACAAAACAGAGCCAAGAAAGCTGTGGCAGAGTGACAGGCTaGAATCTCTATGATTCTGTC +
Preference number: 4 (lower is better)
Translates to: NKKHTHTHTHTKQSQESCGRVTG*NLYDSV
Trigger: GACAGAATCATAGAGATTGCAGCCTGTCACTCTGCC...ACAGCTTTCTTGGCTCTGTTTTGTGTGTGTGTGTGTGTGTGTGTGCTTTTTGTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000022702.13
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR GCA 90 bp ATGTATGGCATCTGCAAGGTGAAGAACATCGACCTCAAGTTCAAAATCATCGTCGGCAGAGTGACAGGCTaGAATCTCTATGATTCTGTC +
Preference number: 4 (lower is better)
Translates to: MYGICKVKNIDLKFKIIVGRVTG*NLYDSV
Trigger: GACAGAATCATAGAGATTGCAGCCTGTCACTCTGCC...GACGATGATTTTGAACTTGAGGTCGATGTTCTTCACCTTGCAGATGCCATACAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000171767.8
CDS-3UTR GCA 90 bp TACTGTAAATCTCGGGGTAGGCAGATAGAGAGAACTGACTACAGCCTTTTGACACAGAAACTTGAGGTCTaGAGTGTCAGGGTTGTCAAA +
Preference number: 4 (lower is better)
Translates to: YCKSRGRQIERTDYSLLTQKLEV*SVRVVK
Trigger: TTTGACAACCCTGACACTGCAGACCTCAAGTTTCTG...TGTCAAAAGGCTGTAGTCAGTTCTCTCTATCTGCCTACCCCGAGATTTACAGTA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000022702.13
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR CCA 90 bp TTTATCTTTGCTGGGGTGAAATGGGAAGGCTTAAGCATTCTTTTCCACATTCAGCTTCGGGGAATGGGCTaGTTAGCTGTTGATCCAGAT +
Preference number: 4 (lower is better)
Translates to: FIFAGVKWEGLSILFHIQLRGMG*LAVDPD
Trigger: ATCTGGATCAACAGCTAACCAGCCCATTCCCCGAAG...CTGAATGTGGAAAAGAATGCTTAAGCCTTCCCATTTCACCCCAGCAAAGATAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 6 transcripts:
ENSMUST00000022702.13
ENSMUST00000110952.10
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR CCA 90 bp ATTTATCTTTGCTGGGGTGAAATGGGAAGGCTTAAGCATTCTTTTCCACATTCATGTCCACAACAGCCATaGAGCACATCTGCCCACATG +
Preference number: 4 (lower is better)
Translates to: IYLCWGEMGRLKHSFPHSCPQQP*STSAHM
Trigger: CATGTGGGCAGATGTGCTCCATGGCTGTTGTGGACA...TGAATGTGGAAAAGAATGCTTAAGCCTTCCCATTTCACCCCAGCAAAGATAAAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000022702.13
ENSMUST00000110952.10
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR CCA 90 bp GTGGCACTGGTACACTTTCAGCTTCTATGTGGTATATCATACCCAGTTGGAGCCTTCTTTAGAAGATCGTaGTCCATTTCTGCAAAGCCT +
Preference number: 4 (lower is better)
Translates to: VALVHFQLLCGISYPVGAFFRRS*SISAKP
Trigger: AGGCTTTGCAGAAATGGACCACGATCTTCTAAAGAA...GGCTCCAACTGGGTATGATATACCACATAGAAGCTGAAAGTGTACCAGTGCCAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000022702.13
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR CCA 90 bp AAAGGAGGTGAACACAGTCCCCACCAACCTACCCACAAAGCTATTTACAGTTGGTTCTTTAGAAGATCGTaGTCCATTTCTGCAAAGCCT +
Preference number: 4 (lower is better)
Translates to: KGGEHSPHQPTHKAIYSWFFRRS*SISAKP
Trigger: AGGCTTTGCAGAAATGGACCACGATCTTCTAAAGAA...CCAACTGTAAATAGCTTTGTGGGTAGGTTGGTGGGGACTGTGTTCACCTCCTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000022702.13
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR TCA 90 bp TTATTTATCTTTGCTGGGGTGAAATGGGAAGGCTTAAGCATTCTTTTCCACATTCAGGGCACTAAACCATaGTTCGTTGTCCCATTGCCC +
Preference number: 4 (lower is better)
Translates to: LFIFAGVKWEGLSILFHIQGTKP*FVVPLP
Trigger: GGGCAATGGGACAACGAATCATGGTTTAGTGCCCTG...AATGTGGAAAAGAATGCTTAAGCCTTCCCATTTCACCCCAGCAAAGATAAATAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000022702.13
ENSMUST00000110952.10
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR TCA 90 bp TTTCTCTTTTGCTACACAATGGCTTGTTTTGGTCTAGAAACTCATTTCTCCATCCAGGGCACTAAACCATaGTTCGTTGTCCCATTGCCC +
Preference number: 4 (lower is better)
Translates to: FLFCYTMACFGLETHFSIQGTKP*FVVPLP
Trigger: GGGCAATGGGACAACGAATCATGGTTTAGTGCCCTG...GATGGAGAAATGAGTTTCTAGACCAAAACAAGCCATTGTGTAGCAAAAGAGAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR TCA 90 bp AATCAGAGACTGACAGCATGTAAGAGACCTGTACAAGCTCATACCAGACAGATCCACAGGCGACCTCAATaGCTTGTTTGTTTGACAAAT +
Preference number: 4 (lower is better)
Translates to: NQRLTACKRPVQAHTRQIHRRPQ*LVCLTN
Trigger: ATTTGTCAAACAAACAAGTCATTGAGGTCGCCTGTG...GATCTGTCTGGTATGAGCTTGTACAGGTCTCTTACATGCTGTCAGTCTCTGATT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000022702.13
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR TCA 90 bp TTTATCTTTGCTGGGGTGAAATGGGAAGGCTTAAGCATTCTTTTCCACATTCAGAGATCCTACTTGCCCTaGGTTATTATAACCCCAGGC +
Preference number: 4 (lower is better)
Translates to: FIFAGVKWEGLSILFHIQRSYLP*VIITPG
Trigger: GCCTGGGGTTATAATAACTCAGGGCAAGTAGGATCT...CTGAATGTGGAAAAGAATGCTTAAGCCTTCCCATTTCACCCCAGCAAAGATAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 6 transcripts:
ENSMUST00000022702.13
ENSMUST00000110952.10
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR TCA 90 bp TCTTGGGGCACCCTTATGATGGACAGTGAATTAACTGAGTGCCTTTTATATATACATCAACCAGAAACTTaGGGTCTGCAGTGTCAGGGT +
Preference number: 4 (lower is better)
Translates to: SWGTLMMDSELTECLLYIHQPET*GLQCQG
Trigger: ACCCTGACACTGCAGACCTCAAGTTTCTGGTTGATG...TATATATAAAAGGCACTCAGTTAATTCACTGTCCATCATAAGGGTGCCCCAAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000022702.13
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR TCA 90 bp ATTTATCTTTGCTGGGGTGAAATGGGAAGGCTTAAGCATTCTTTTCCACATTCACATCAACCAGAAACTTaGGGTCTGCAGTGTCAGGGT +
Preference number: 4 (lower is better)
Translates to: IYLCWGEMGRLKHSFPHSHQPET*GLQCQG
Trigger: ACCCTGACACTGCAGACCTCAAGTTTCTGGTTGATG...TGAATGTGGAAAAGAATGCTTAAGCCTTCCCATTTCACCCCAGCAAAGATAAAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000022702.13
ENSMUST00000110952.10
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR TCA 90 bp CACAAGAGTGGCACTGGTACACTTTCAGCTTCTATGTGGTATATCATACCCAGTCATTTCTGCAAAGCCTaGCGTTTGTGTTACTACAGT +
Preference number: 4 (lower is better)
Translates to: HKSGTGTLSASMWYIIPSHFCKA*RLCYYS
Trigger: ACTGTAGTAACACAAACGTCAGGCTTTGCAGAAATG...ACTGGGTATGATATACCACATAGAAGCTGAAAGTGTACCAGTGCCACTCTTGTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000022702.13
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR GCA 90 bp AGAGTGGCACTGGTACACTTTCAGCTTCTATGTGGTATATCATACCCAGTTGGAAGCCACTGCAGTTTGTaGCAAGCACAAAAATCTCAT +
Preference number: 4 (lower is better)
Translates to: RVALVHFQLLCGISYPVGSHCSL*QAQKSH
Trigger: ATGAGATTTTTGTGCTTGGCACAAACTGCAGTGGCT...TCCAACTGGGTATGATATACCACATAGAAGCTGAAAGTGTACCAGTGCCACTCT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000022702.13
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR GCA 90 bp AGGGAGACTCCCCACAAGAGTGGCACTGGTACACTTTCAGCTTCTATGTGGTATATAACTACTTTATTCTaGAAGCATCCAGTGACTCTT +
Preference number: 4 (lower is better)
Translates to: RETPHKSGTGTLSASMWYITTLF*KHPVTL
Trigger: AAGAGTCACTGGATGCTTGCAGAATAAAGTAGTTAT...ATACCACATAGAAGCTGAAAGTGTACCAGTGCCACTCTTGTGGGGAGTCTCCCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000022702.13
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR GCA 90 bp GACTCCCCACAAGAGTGGCACTGGTACACTTTCAGCTTCTATGTGGTATATCATGCACATCTGCCCACATaGTATGTTCATAACTACTTT +
Preference number: 4 (lower is better)
Translates to: DSPQEWHWYTFSFYVVYHAHLPT*YVHNYF
Trigger: AAAGTAGTTATGAACATAGCATGTGGGCAGATGTGC...ATGATATACCACATAGAAGCTGAAAGTGTACCAGTGCCACTCTTGTGGGGAGTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000022702.13
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR GCA 90 bp AACAAAAAGCACACACACACACACACACACACAAAACAGAGCCAAGAAAGCTGTCAGAAACTTGAGGTCTaGAGTGTCAGGGTTGTCAAA +
Preference number: 4 (lower is better)
Translates to: NKKHTHTHTHTKQSQESCQKLEV*SVRVVK
Trigger: TTTGACAACCCTGACACTGCAGACCTCAAGTTTCTG...ACAGCTTTCTTGGCTCTGTTTTGTGTGTGTGTGTGTGTGTGTGTGCTTTTTGTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000022702.13
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR CCA 90 bp ACTCCCCACAAGAGTGGCACTGGTACACTTTCAGCTTCTATGTGGTATATCATAAACTCTTCTAAGTCCTaGGCATCATACTTGACAGCA +
Preference number: 4 (lower is better)
Translates to: TPHKSGTGTLSASMWYIINSSKS*ASYLTA
Trigger: TGCTGTCAAGTATGATGCCCAGGACTTAGAAGAGTT...TATGATATACCACATAGAAGCTGAAAGTGTACCAGTGCCACTCTTGTGGGGAGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000022702.13
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR CCA 90 bp CACACACACACACACACACAAAACAGAGCCAAGAAAGCTGTTAGCGAGTTACTCTTCTTTAGAAGATCGTaGTCCATTTCTGCAAAGCCT +
Preference number: 4 (lower is better)
Translates to: HTHTHTQNRAKKAVSELLFFRRS*SISAKP
Trigger: AGGCTTTGCAGAAATGGACCACGATCTTCTAAAGAA...GAGTAACTCGCTAACAGCTTTCTTGGCTCTGTTTTGTGTGTGTGTGTGTGTGTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000022702.13
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR TCA 90 bp ATTTATCTTTGCTGGGGTGAAATGGGAAGGCTTAAGCATTCTTTTCCACATTCACCGAAGACACAAGCCTaGCGAATCAACTGTAACTCT +
Preference number: 4 (lower is better)
Translates to: IYLCWGEMGRLKHSFPHSPKTQA*RINCNS
Trigger: AGAGTTACAGTTGATTCGTCAGGCTTGTGTCTTCGG...TGAATGTGGAAAAGAATGCTTAAGCCTTCCCATTTCACCCCAGCAAAGATAAAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000022702.13
ENSMUST00000110952.10
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR TCA 90 bp TATCTTTGCTGGGGTGAAATGGGAAGGCTTAAGCATTCTTTTCCACATTCAGGACACAGGCGACCTCAATaGCTTGTTTGTTTGACAAAT +
Preference number: 4 (lower is better)
Translates to: YLCWGEMGRLKHSFPHSGHRRPQ*LVCLTN
Trigger: ATTTGTCAAACAAACAAGTCATTGAGGTCGCCTGTG...TCCTGAATGTGGAAAAGAATGCTTAAGCCTTCCCATTTCACCCCAGCAAAGATA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000022702.13
ENSMUST00000110952.10
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR TCA 90 bp ATGTATGGCATCTGCAAGGTGAAGAACATCGACCTCAAGTTCAAAATCATCGTCAGGCTGCAATCTCTATaGTTCTGTCCTTTTCCACAA +
Preference number: 4 (lower is better)
Translates to: MYGICKVKNIDLKFKIIVRLQSL*FCPFPQ
Trigger: TTGTGGAAAAGGACAGAATCATAGAGATTGCAGCCT...GACGATGATTTTGAACTTGAGGTCGATGTTCTTCACCTTGCAGATGCCATACAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000171767.8
CDS-3UTR TCA 90 bp ATGTATGGCATCTGCAAGGTGAAGAACATCGACCTCAAGTTCAAAATCATCGTCCCTCAGGAGATAGGCTaGTGTTATCTGTGTATAGAT +
Preference number: 4 (lower is better)
Translates to: MYGICKVKNIDLKFKIIVPQEIG*CYLCID
Trigger: ATCTATACACAGATAACATCAGCCTATCTCCTGAGG...GACGATGATTTTGAACTTGAGGTCGATGTTCTTCACCTTGCAGATGCCATACAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000171767.8
CDS-3UTR GCA 90 bp ACACACACACACACACAAAACAGAGCCAAGAAAGCTGTTAGCGAGTTACTCATAAGCCACTGCAGTTTGTaGCAAGCACAAAAATCTCAT +
Preference number: 4 (lower is better)
Translates to: THTHTQNRAKKAVSELLISHCSL*QAQKSH
Trigger: ATGAGATTTTTGTGCTTGGCACAAACTGCAGTGGCT...TATGAGTAACTCGCTAACAGCTTTCTTGGCTCTGTTTTGTGTGTGTGTGTGTGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000022702.13
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR GCA 90 bp ATGTATGGCATCTGCAAGGTGAAGAACATCGACCTCAAGTTCAAAATCATCGTCAGCCACTGCAGTTTGTaGCAAGCACAAAAATCTCAT +
Preference number: 4 (lower is better)
Translates to: MYGICKVKNIDLKFKIIVSHCSL*QAQKSH
Trigger: ATGAGATTTTTGTGCTTGGCACAAACTGCAGTGGCT...GACGATGATTTTGAACTTGAGGTCGATGTTCTTCACCTTGCAGATGCCATACAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000171767.8
CDS-3UTR GCA 90 bp TACTTGACAGCAGCAGAGAGCAGAGCAATAGCATTCTCCTCACAGATTCCTTGCATAACTACTTTATTCTaGAAGCATCCAGTGACTCTT +
Preference number: 4 (lower is better)
Translates to: YLTAAESRAIAFSSQIPCITTLF*KHPVTL
Trigger: AAGAGTCACTGGATGCTTGCAGAATAAAGTAGTTAT...GCAAGGAATCTGTGAGGAGAATGCTATTGCTCTGCTCTCTGCTGCTGTCAAGTA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000163797.2
ENSMUST00000164298.8
CDS-3UTR GCA 90 bp AAAGGAGGTGAACACAGTCCCCACCAACCTACCCACAAAGCTATTTACAGTTGGATAACTACTTTATTCTaGAAGCATCCAGTGACTCTT +
Preference number: 4 (lower is better)
Translates to: KGGEHSPHQPTHKAIYSWITTLF*KHPVTL
Trigger: AAGAGTCACTGGATGCTTGCAGAATAAAGTAGTTAT...CCAACTGTAAATAGCTTTGTGGGTAGGTTGGTGGGGACTGTGTTCACCTCCTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000022702.13
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR GCA 90 bp GGAGATAGGCTGATGTTATCTGTGTATAGATACTCCAGGAAAGCTCGGAACACAGCACATCTGCCCACATaGTATGTTCATAACTACTTT +
Preference number: 4 (lower is better)
Translates to: GDRLMLSVYRYSRKARNTAHLPT*YVHNYF
Trigger: AAAGTAGTTATGAACATAGCATGTGGGCAGATGTGC...TGTGTTCCGAGCTTTCCTGGAGTATCTATACACAGATAACATCAGCCTATCTCC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000163797.2
ENSMUST00000164298.8
CDS-3UTR GCA 90 bp AATCAGAGACTGACAGCATGTAAGAGACCTGTACAAGCTCATACCAGACAGATCGCACATCTGCCCACATaGTATGTTCATAACTACTTT +
Preference number: 4 (lower is better)
Translates to: NQRLTACKRPVQAHTRQIAHLPT*YVHNYF
Trigger: AAAGTAGTTATGAACATAGCATGTGGGCAGATGTGC...GATCTGTCTGGTATGAGCTTGTACAGGTCTCTTACATGCTGTCAGTCTCTGATT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000022702.13
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR GCA 90 bp TATGTATGGCATCTGCAAGGTGAAGAACATCGACCTCAAGTTCAAAATCATCGTCAGAAACTTGAGGTCTaGAGTGTCAGGGTTGTCAAA +
Preference number: 4 (lower is better)
Translates to: YVWHLQGEEHRPQVQNHRQKLEV*SVRVVK
Trigger: TTTGACAACCCTGACACTGCAGACCTCAAGTTTCTG...ACGATGATTTTGAACTTGAGGTCGATGTTCTTCACCTTGCAGATGCCATACATA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000171767.8
CDS-3UTR CCA 90 bp TTATTTATCTTTGCTGGGGTGAAATGGGAAGGCTTAAGCATTCTTTTCCACATTCTTCGGGGAATGGGCTaGTTAGCTGTTGATCCAGAT +
Preference number: 4 (lower is better)
Translates to: LFIFAGVKWEGLSILFHILRGMG*LAVDPD
Trigger: ATCTGGATCAACAGCTAACCAGCCCATTCCCCGAAG...AATGTGGAAAAGAATGCTTAAGCCTTCCCATTTCACCCCAGCAAAGATAAATAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 6 transcripts:
ENSMUST00000022702.13
ENSMUST00000110952.10
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR CCA 90 bp ACACACACACACACACAAAACAGAGCCAAGAAAGCTGTTAGCGAGTTACTCATAAACTCTTCTAAGTCCTaGGCATCATACTTGACAGCA +
Preference number: 4 (lower is better)
Translates to: THTHTQNRAKKAVSELLINSSKS*ASYLTA
Trigger: TGCTGTCAAGTATGATGCCCAGGACTTAGAAGAGTT...TATGAGTAACTCGCTAACAGCTTTCTTGGCTCTGTTTTGTGTGTGTGTGTGTGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000022702.13
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR TCA 90 bp TTTATCTTTGCTGGGGTGAAATGGGAAGGCTTAAGCATTCTTTTCCACATTCAGAGGCTGCAATCTCTATaGTTCTGTCCTTTTCCACAA +
Preference number: 4 (lower is better)
Translates to: FIFAGVKWEGLSILFHIQRLQSL*FCPFPQ
Trigger: TTGTGGAAAAGGACAGAATCATAGAGATTGCAGCCT...CTGAATGTGGAAAAGAATGCTTAAGCCTTCCCATTTCACCCCAGCAAAGATAAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 6 transcripts:
ENSMUST00000022702.13
ENSMUST00000110952.10
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR GCA 90 bp TTATTTATCTTTGCTGGGGTGAAATGGGAAGGCTTAAGCATTCTTTTCCACATTGATTCGTTGTCCCATTaGCCAGCTGGCTATAAGCAT +
Preference number: 4 (lower is better)
Translates to: LFIFAGVKWEGLSILFHIDSLSH*PAGYKH
Trigger: ATGCTTATAGCCAGCTGGGCAATGGGACAACGAATC...AATGTGGAAAAGAATGCTTAAGCCTTCCCATTTCACCCCAGCAAAGATAAATAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000022702.13
ENSMUST00000110952.10
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR GCA 90 bp TTTCTCTTTTGCTACACAATGGCTTGTTTTGGTCTAGAAACTCATTTCTCCATCGATTCGTTGTCCCATTaGCCAGCTGGCTATAAGCAT +
Preference number: 4 (lower is better)
Translates to: FLFCYTMACFGLETHFSIDSLSH*PAGYKH
Trigger: ATGCTTATAGCCAGCTGGGCAATGGGACAACGAATC...GATGGAGAAATGAGTTTCTAGACCAAAACAAGCCATTGTGTAGCAAAAGAGAAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR GCA 90 bp ACAAAAAGCACACACACACACACACACACACAAAACAGAGCCAAGAAAGCTGTTGCACATCTGCCCACATaGTATGTTCATAACTACTTT +
Preference number: 4 (lower is better)
Translates to: TKSTHTHTHTQNRAKKAVAHLPT*YVHNYF
Trigger: AAAGTAGTTATGAACATAGCATGTGGGCAGATGTGC...AACAGCTTTCTTGGCTCTGTTTTGTGTGTGTGTGTGTGTGTGTGTGCTTTTTGT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000022702.13
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR GCA 90 bp CTGATGTTATCTGTGTATAGATACTCCAGGAAAGCTCGGAACACAGGATACGAAGCACATCTGCCCACATaGTATGTTCATAACTACTTT +
Preference number: 4 (lower is better)
Translates to: LMLSVYRYSRKARNTGYEAHLPT*YVHNYF
Trigger: AAAGTAGTTATGAACATAGCATGTGGGCAGATGTGC...TTCGTATCCTGTGTTCCGAGCTTTCCTGGAGTATCTATACACAGATAACATCAG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000163797.2
ENSMUST00000164298.8
CDS-3UTR GCA 90 bp CTATGTATCAGCCAGCTGAATACTGAACCATTTCTCCAGATTAGCAAACTATCACAGAAACTTGAGGTCTaGAGTGTCAGGGTTGTCAAA +
Preference number: 4 (lower is better)
Translates to: LCISQLNTEPFLQISKLSQKLEV*SVRVVK
Trigger: TTTGACAACCCTGACACTGCAGACCTCAAGTTTCTG...TGATAGTTTGCTAATCTGGAGAAATGGTTCAGTATTCAGCTGGCTGATACATAG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000022702.13
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR CCA 90 bp TATCTTTGCTGGGGTGAAATGGGAAGGCTTAAGCATTCTTTTCCACATTCAGGATTCTTTAGAAGATCGTaGTCCATTTCTGCAAAGCCT +
Preference number: 4 (lower is better)
Translates to: YLCWGEMGRLKHSFPHSGFFRRS*SISAKP
Trigger: AGGCTTTGCAGAAATGGACCACGATCTTCTAAAGAA...TCCTGAATGTGGAAAAGAATGCTTAAGCCTTCCCATTTCACCCCAGCAAAGATA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000022702.13
ENSMUST00000110952.10
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR TCA 90 bp CTATGTATCAGCCAGCTGAATACTGAACCATTTCTCCAGATTAGCAAACTATCACACAGGCGACCTCAATaGCTTGTTTGTTTGACAAAT +
Preference number: 4 (lower is better)
Translates to: LCISQLNTEPFLQISKLSHRRPQ*LVCLTN
Trigger: ATTTGTCAAACAAACAAGTCATTGAGGTCGCCTGTG...TGATAGTTTGCTAATCTGGAGAAATGGTTCAGTATTCAGCTGGCTGATACATAG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000022702.13
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR TCA 90 bp ATTTATCTTTGCTGGGGTGAAATGGGAAGGCTTAAGCATTCTTTTCCACATTCAAGGCTGCAATCTCTATaGTTCTGTCCTTTTCCACAA +
Preference number: 4 (lower is better)
Translates to: IYLCWGEMGRLKHSFPHSRLQSL*FCPFPQ
Trigger: TTGTGGAAAAGGACAGAATCATAGAGATTGCAGCCT...TGAATGTGGAAAAGAATGCTTAAGCCTTCCCATTTCACCCCAGCAAAGATAAAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 6 transcripts:
ENSMUST00000022702.13
ENSMUST00000110952.10
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR GCA 90 bp ATTTATCTTTGCTGGGGTGAAATGGGAAGGCTTAAGCATTCTTTTCCACATTCAAGCCACTGCAGTTTGTaGCAAGCACAAAAATCTCAT +
Preference number: 4 (lower is better)
Translates to: IYLCWGEMGRLKHSFPHSSHCSL*QAQKSH
Trigger: ATGAGATTTTTGTGCTTGGCACAAACTGCAGTGGCT...TGAATGTGGAAAAGAATGCTTAAGCCTTCCCATTTCACCCCAGCAAAGATAAAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 6 transcripts:
ENSMUST00000022702.13
ENSMUST00000110952.10
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR GCA 90 bp TTTATCTTTGCTGGGGTGAAATGGGAAGGCTTAAGCATTCTTTTCCACATTCAGGCACATCTGCCCACATaGTATGTTCATAACTACTTT +
Preference number: 4 (lower is better)
Translates to: FIFAGVKWEGLSILFHIQAHLPT*YVHNYF
Trigger: AAAGTAGTTATGAACATAGCATGTGGGCAGATGTGC...CTGAATGTGGAAAAGAATGCTTAAGCCTTCCCATTTCACCCCAGCAAAGATAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000022702.13
ENSMUST00000110952.10
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR GCA 90 bp TTATTTATCTTTGCTGGGGTGAAATGGGAAGGCTTAAGCATTCTTTTCCACATTCAGAAACTTGAGGTCTaGAGTGTCAGGGTTGTCAAA +
Preference number: 4 (lower is better)
Translates to: LFIFAGVKWEGLSILFHIQKLEV*SVRVVK
Trigger: TTTGACAACCCTGACACTGCAGACCTCAAGTTTCTG...AATGTGGAAAAGAATGCTTAAGCCTTCCCATTTCACCCCAGCAAAGATAAATAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000022702.13
ENSMUST00000110952.10
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR CCA 90 bp ATTTATCTTTGCTGGGGTGAAATGGGAAGGCTTAAGCATTCTTTTCCACATTCAAACTCTTCTAAGTCCTaGGCATCATACTTGACAGCA +
Preference number: 4 (lower is better)
Translates to: IYLCWGEMGRLKHSFPHSNSSKS*ASYLTA
Trigger: TGCTGTCAAGTATGATGCCCAGGACTTAGAAGAGTT...TGAATGTGGAAAAGAATGCTTAAGCCTTCCCATTTCACCCCAGCAAAGATAAAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000022702.13
ENSMUST00000110952.10
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR TCA 90 bp TTATTTATCTTTGCTGGGGTGAAATGGGAAGGCTTAAGCATTCTTTTCCACATTCACAGGCGACCTCAATaGCTTGTTTGTTTGACAAAT +
Preference number: 4 (lower is better)
Translates to: LFIFAGVKWEGLSILFHIHRRPQ*LVCLTN
Trigger: ATTTGTCAAACAAACAAGTCATTGAGGTCGCCTGTG...AATGTGGAAAAGAATGCTTAAGCCTTCCCATTTCACCCCAGCAAAGATAAATAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000022702.13
ENSMUST00000110952.10
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR TCA 90 bp TTATTTATCTTTGCTGGGGTGAAATGGGAAGGCTTAAGCATTCTTTTCCACATTCCTCAGGAGATAGGCTaGTGTTATCTGTGTATAGAT +
Preference number: 4 (lower is better)
Translates to: LFIFAGVKWEGLSILFHIPQEIG*CYLCID
Trigger: ATCTATACACAGATAACATCAGCCTATCTCCTGAGG...AATGTGGAAAAGAATGCTTAAGCCTTCCCATTTCACCCCAGCAAAGATAAATAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000022702.13
ENSMUST00000110952.10
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR TCA 90 bp TTATTTATCTTTGCTGGGGTGAAATGGGAAGGCTTAAGCATTCTTTTCCACATTCATTTCTGCAAAGCCTaGCGTTTGTGTTACTACAGT +
Preference number: 4 (lower is better)
Translates to: LFIFAGVKWEGLSILFHIHFCKA*RLCYYS
Trigger: ACTGTAGTAACACAAACGTCAGGCTTTGCAGAAATG...AATGTGGAAAAGAATGCTTAAGCCTTCCCATTTCACCCCAGCAAAGATAAATAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000022702.13
ENSMUST00000110952.10
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR GCA 90 bp TTATTTATCTTTGCTGGGGTGAAATGGGAAGGCTTAAGCATTCTTTTCCACATTAGCCACTGCAGTTTGTaGCAAGCACAAAAATCTCAT +
Preference number: 4 (lower is better)
Translates to: LFIFAGVKWEGLSILFHISHCSL*QAQKSH
Trigger: ATGAGATTTTTGTGCTTGGCACAAACTGCAGTGGCT...AATGTGGAAAAGAATGCTTAAGCCTTCCCATTTCACCCCAGCAAAGATAAATAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 6 transcripts:
ENSMUST00000022702.13
ENSMUST00000110952.10
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR GCA 90 bp TATCTTTGCTGGGGTGAAATGGGAAGGCTTAAGCATTCTTTTCCACATTCAGGAATAACTACTTTATTCTaGAAGCATCCAGTGACTCTT +
Preference number: 4 (lower is better)
Translates to: YLCWGEMGRLKHSFPHSGITTLF*KHPVTL
Trigger: AAGAGTCACTGGATGCTTGCAGAATAAAGTAGTTAT...TCCTGAATGTGGAAAAGAATGCTTAAGCCTTCCCATTTCACCCCAGCAAAGATA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000022702.13
ENSMUST00000110952.10
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR GCA 90 bp TATGTATGGCATCTGCAAGGTGAAGAACATCGACCTCAAGTTCAAAATCATCGTATAACTACTTTATTCTaGAAGCATCCAGTGACTCTT +
Preference number: 4 (lower is better)
Translates to: YVWHLQGEEHRPQVQNHRITTLF*KHPVTL
Trigger: AAGAGTCACTGGATGCTTGCAGAATAAAGTAGTTAT...ACGATGATTTTGAACTTGAGGTCGATGTTCTTCACCTTGCAGATGCCATACATA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000171767.8
CDS-3UTR GCA 90 bp TTATTTATCTTTGCTGGGGTGAAATGGGAAGGCTTAAGCATTCTTTTCCACATTATAACTACTTTATTCTaGAAGCATCCAGTGACTCTT +
Preference number: 4 (lower is better)
Translates to: LFIFAGVKWEGLSILFHIITTLF*KHPVTL
Trigger: AAGAGTCACTGGATGCTTGCAGAATAAAGTAGTTAT...AATGTGGAAAAGAATGCTTAAGCCTTCCCATTTCACCCCAGCAAAGATAAATAA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000022702.13
ENSMUST00000110952.10
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR CAA 90 bp GCACGTGCTGGGAGAGGGAGACTCCCCACAAGAGTGGCACTGGTACACTTTCAGCTGGACACGGATGCCTaGCAGGGCGGCCACTCTGCA +
Preference number: 5 (lower is better)
Translates to: ARAGRGRLPTRVALVHFQLDTDA*QGGHSA
Trigger: TGCAGAGTGGCCGCCCTGCAAGGCATCCGTGTCCAG...CTGAAAGTGTACCAGTGCCACTCTTGTGGGGAGTCTCCCTCTCCCAGCACGTGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000022702.13
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR CAA 90 bp GTGGTCGTCAGGTTCCACGGAGAGAAGGCGCCAGGTGACAGCCGGGGTGGCGAAGACAGCCACTGCAGTTaGTGCCAAGCACAAAAATCT +
Preference number: 5 (lower is better)
Translates to: VVVRFHGEKAPGDSRGGEDSHCS*CQAQKS
Trigger: AGATTTTTGTGCTTGGCACAAACTGCAGTGGCTGTC...TTCGCCACCCCGGCTGTCACCTGGCGCCTTCTCTCCGTGGAACCTGACGACCAC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000163797.2
ENSMUST00000164298.8
CDS-3UTR CAA 90 bp TACTTGACAGCAGCAGAGAGCAGAGCAATAGCATTCTCCTCACAGATTCCTTGCCTGGACACGGATGCCTaGCAGGGCGGCCACTCTGCA +
Preference number: 5 (lower is better)
Translates to: YLTAAESRAIAFSSQIPCLDTDA*QGGHSA
Trigger: TGCAGAGTGGCCGCCCTGCAAGGCATCCGTGTCCAG...GCAAGGAATCTGTGAGGAGAATGCTATTGCTCTGCTCTCTGCTGCTGTCAAGTA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000163797.2
ENSMUST00000164298.8
CDS-3UTR CAA 90 bp AGAAAGGAGGTGAACACAGTCCCCACCAACCTACCCACAAAGCTATTTACAGTTCTGGACACGGATGCCTaGCAGGGCGGCCACTCTGCA +
Preference number: 5 (lower is better)
Translates to: RKEVNTVPTNLPTKLFTVLDTDA*QGGHSA
Trigger: TGCAGAGTGGCCGCCCTGCAAGGCATCCGTGTCCAG...AACTGTAAATAGCTTTGTGGGTAGGTTGGTGGGGACTGTGTTCACCTCCTTTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000022702.13
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR CAA 90 bp AGAGTGGCACTGGTACACTTTCAGCTTCTATGTGGTATATCATACCCAGTTGGACTGGACACGGATGCCTaGCAGGGCGGCCACTCTGCA +
Preference number: 5 (lower is better)
Translates to: RVALVHFQLLCGISYPVGLDTDA*QGGHSA
Trigger: TGCAGAGTGGCCGCCCTGCAAGGCATCCGTGTCCAG...TCCAACTGGGTATGATATACCACATAGAAGCTGAAAGTGTACCAGTGCCACTCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000022702.13
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR CAA 90 bp TGGGAGAGGGAGACTCCCCACAAGAGTGGCACTGGTACACTTTCAGCTTCTATGTCCTGGGCATCATACTaGACAGCAGCAGAGAGCAGA +
Preference number: 5 (lower is better)
Translates to: WERETPHKSGTGTLSASMSWASY*TAAESR
Trigger: TCTGCTCTCTGCTGCTGTCAAGTATGATGCCCAGGA...CATAGAAGCTGAAAGTGTACCAGTGCCACTCTTGTGGGGAGTCTCCCTCTCCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000022702.13
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR CAA 90 bp ACAAAAAGCACACACACACACACACACACACAAAACAGAGCCAAGAAAGCTGTTCTGGACACGGATGCCTaGCAGGGCGGCCACTCTGCA +
Preference number: 5 (lower is better)
Translates to: TKSTHTHTHTQNRAKKAVLDTDA*QGGHSA
Trigger: TGCAGAGTGGCCGCCCTGCAAGGCATCCGTGTCCAG...AACAGCTTTCTTGGCTCTGTTTTGTGTGTGTGTGTGTGTGTGTGTGCTTTTTGT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000022702.13
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR CAA 90 bp CTGATGTTATCTGTGTATAGATACTCCAGGAAAGCTCGGAACACAGGATACGAACTGGACACGGATGCCTaGCAGGGCGGCCACTCTGCA +
Preference number: 5 (lower is better)
Translates to: LMLSVYRYSRKARNTGYELDTDA*QGGHSA
Trigger: TGCAGAGTGGCCGCCCTGCAAGGCATCCGTGTCCAG...TTCGTATCCTGTGTTCCGAGCTTTCCTGGAGTATCTATACACAGATAACATCAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000163797.2
ENSMUST00000164298.8
CDS-3UTR CAA 90 bp TTGAGCAACAAAACAGATCCAGCCTACATTCAGATCACAGATCACAACACCATGCTGGACACGGATGCCTaGCAGGGCGGCCACTCTGCA +
Preference number: 5 (lower is better)
Translates to: LSNKTDPAYIQITDHNTMLDTDA*QGGHSA
Trigger: TGCAGAGTGGCCGCCCTGCAAGGCATCCGTGTCCAG...CATGGTGTTGTGATCTGTGATCTGAATGTAGGCTGGATCTGTTTTGTTGCTCAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000171767.8
CDS-3UTR CAA 90 bp ATTTATCTTTGCTGGGGTGAAATGGGAAGGCTTAAGCATTCTTTTCCACATTCACTGGACACGGATGCCTaGCAGGGCGGCCACTCTGCA +
Preference number: 5 (lower is better)
Translates to: IYLCWGEMGRLKHSFPHSLDTDA*QGGHSA
Trigger: TGCAGAGTGGCCGCCCTGCAAGGCATCCGTGTCCAG...TGAATGTGGAAAAGAATGCTTAAGCCTTCCCATTTCACCCCAGCAAAGATAAAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000022702.13
ENSMUST00000110952.10
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR CAA 90 bp AAAGGAGGTGAACACAGTCCCCACCAACCTACCCACAAAGCTATTTACAGTTGGCCATCAACCAGAAACTaGAGGTCTGCAGTGTCAGGG +
Preference number: 5 (lower is better)
Translates to: KGGEHSPHQPTHKAIYSWPSTRN*RSAVSG
Trigger: CCCTGACACTGCAGACCTCAAGTTTCTGGTTGATGG...CCAACTGTAAATAGCTTTGTGGGTAGGTTGGTGGGGACTGTGTTCACCTCCTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000022702.13
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR CAA 90 bp AACAGAGCCAAGAAAGCTGTTAGCGAGTTACTCATAAGCATTGGGCCTACCCTGCCATCAACCAGAAACTaGAGGTCTGCAGTGTCAGGG +
Preference number: 5 (lower is better)
Translates to: NRAKKAVSELLISIGPTLPSTRN*RSAVSG
Trigger: CCCTGACACTGCAGACCTCAAGTTTCTGGTTGATGG...CAGGGTAGGCCCAATGCTTATGAGTAACTCGCTAACAGCTTTCTTGGCTCTGTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000022702.13
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR CAA 90 bp CTCCCCACAAGAGTGGCACTGGTACACTTTCAGCTTCTATGTGGTATATCATACCCATCAACCAGAAACTaGAGGTCTGCAGTGTCAGGG +
Preference number: 5 (lower is better)
Translates to: LPTRVALVHFQLLCGISYPSTRN*RSAVSG
Trigger: CCCTGACACTGCAGACCTCAAGTTTCTGGTTGATGG...GTATGATATACCACATAGAAGCTGAAAGTGTACCAGTGCCACTCTTGTGGGGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000022702.13
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR CAA 90 bp CTTGACAGCAGCAGAGAGCAGAGCAATAGCATTCTCCTCACAGATTCCTTGCTTGACAGCCACTGCAGTTaGTGCCAAGCACAAAAATCT +
Preference number: 5 (lower is better)
Translates to: LDSSREQSNSILLTDSLLDSHCS*CQAQKS
Trigger: AGATTTTTGTGCTTGGCACAAACTGCAGTGGCTGTC...AAGCAAGGAATCTGTGAGGAGAATGCTATTGCTCTGCTCTCTGCTGCTGTCAAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000163797.2
ENSMUST00000164298.8
CDS-3UTR CAA 90 bp AAAGGAGGTGAACACAGTCCCCACCAACCTACCCACAAAGCTATTTACAGTTGGGACAGCCACTGCAGTTaGTGCCAAGCACAAAAATCT +
Preference number: 5 (lower is better)
Translates to: KGGEHSPHQPTHKAIYSWDSHCS*CQAQKS
Trigger: AGATTTTTGTGCTTGGCACAAACTGCAGTGGCTGTC...CCAACTGTAAATAGCTTTGTGGGTAGGTTGGTGGGGACTGTGTTCACCTCCTTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000022702.13
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR CAA 90 bp TACTGTAAATCTCGGGGTAGGCAGATAGAGAGAACTGACTACAGCCTTTTGACATCCTGGGCATCATACTaGACAGCAGCAGAGAGCAGA +
Preference number: 5 (lower is better)
Translates to: YCKSRGRQIERTDYSLLTSWASY*TAAESR
Trigger: TCTGCTCTCTGCTGCTGTCAAGTATGATGCCCAGGA...TGTCAAAAGGCTGTAGTCAGTTCTCTCTATCTGCCTACCCCGAGATTTACAGTA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000022702.13
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR CAA 90 bp TATCTTTGCTGGGGTGAAATGGGAAGGCTTAAGCATTCTTTTCCACATTCAGGACCATCAACCAGAAACTaGAGGTCTGCAGTGTCAGGG +
Preference number: 5 (lower is better)
Translates to: YLCWGEMGRLKHSFPHSGPSTRN*RSAVSG
Trigger: CCCTGACACTGCAGACCTCAAGTTTCTGGTTGATGG...TCCTGAATGTGGAAAAGAATGCTTAAGCCTTCCCATTTCACCCCAGCAAAGATA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000022702.13
ENSMUST00000110952.10
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR CAA 90 bp ACAAAAAGCACACACACACACACACACACACAAAACAGAGCCAAGAAAGCTGTTTCCTGGGCATCATACTaGACAGCAGCAGAGAGCAGA +
Preference number: 5 (lower is better)
Translates to: TKSTHTHTHTQNRAKKAVSWASY*TAAESR
Trigger: TCTGCTCTCTGCTGCTGTCAAGTATGATGCCCAGGA...AACAGCTTTCTTGGCTCTGTTTTGTGTGTGTGTGTGTGTGTGTGTGCTTTTTGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000022702.13
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR CAA 90 bp TATCTTTGCTGGGGTGAAATGGGAAGGCTTAAGCATTCTTTTCCACATTCAGGATCCTGGGCATCATACTaGACAGCAGCAGAGAGCAGA +
Preference number: 5 (lower is better)
Translates to: YLCWGEMGRLKHSFPHSGSWASY*TAAESR
Trigger: TCTGCTCTCTGCTGCTGTCAAGTATGATGCCCAGGA...TCCTGAATGTGGAAAAGAATGCTTAAGCCTTCCCATTTCACCCCAGCAAAGATA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000022702.13
ENSMUST00000110952.10
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR CAA 90 bp ATGTATGGCATCTGCAAGGTGAAGAACATCGACCTCAAGTTCAAAATCATCGTCGACTGGGCATCATACTaGACAGCAGCAGAGAGCAGA +
Preference number: 5 (lower is better)
Translates to: MYGICKVKNIDLKFKIIVDWASY*TAAESR
Trigger: TCTGCTCTCTGCTGCTGTCAAGTATGATGCCCAGTC...GACGATGATTTTGAACTTGAGGTCGATGTTCTTCACCTTGCAGATGCCATACAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000171767.8
CDS-3UTR CAA 90 bp TTTATCTTTGCTGGGGTGAAATGGGAAGGCTTAAGCATTCTTTTCCACATTCAGCCATCAACCAGAAACTaGAGGTCTGCAGTGTCAGGG +
Preference number: 5 (lower is better)
Translates to: FIFAGVKWEGLSILFHIQPSTRN*RSAVSG
Trigger: CCCTGACACTGCAGACCTCAAGTTTCTGGTTGATGG...CTGAATGTGGAAAAGAATGCTTAAGCCTTCCCATTTCACCCCAGCAAAGATAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000022702.13
ENSMUST00000110952.10
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR CAA 90 bp TATGTATGGCATCTGCAAGGTGAAGAACATCGACCTCAAGTTCAAAATCATCGTCCATCAACCAGAAACTaGAGGTCTGCAGTGTCAGGG +
Preference number: 5 (lower is better)
Translates to: YVWHLQGEEHRPQVQNHRPSTRN*RSAVSG
Trigger: CCCTGACACTGCAGACCTCAAGTTTCTGGTTGATGG...ACGATGATTTTGAACTTGAGGTCGATGTTCTTCACCTTGCAGATGCCATACATA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000171767.8
CDS-3UTR CAA 90 bp TTTATCTTTGCTGGGGTGAAATGGGAAGGCTTAAGCATTCTTTTCCACATTCAGTCCTGGGCATCATACTaGACAGCAGCAGAGAGCAGA +
Preference number: 5 (lower is better)
Translates to: FIFAGVKWEGLSILFHIQSWASY*TAAESR
Trigger: TCTGCTCTCTGCTGCTGTCAAGTATGATGCCCAGGA...CTGAATGTGGAAAAGAATGCTTAAGCCTTCCCATTTCACCCCAGCAAAGATAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000022702.13
ENSMUST00000110952.10
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR CAA 90 bp AACAAAAAGCACACACACACACACACACACACAAAACAGAGCCAAGAAAGCTGTGACAGCCACTGCAGTTaGTGCCAAGCACAAAAATCT +
Preference number: 5 (lower is better)
Translates to: NKKHTHTHTHTKQSQESCDSHCS*CQAQKS
Trigger: AGATTTTTGTGCTTGGCACAAACTGCAGTGGCTGTC...ACAGCTTTCTTGGCTCTGTTTTGTGTGTGTGTGTGTGTGTGTGTGCTTTTTGTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 5 transcripts:
ENSMUST00000022702.13
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR CAA 90 bp TGGTCTAGAAACTCATTTCTCCATCACAATGCTACCCATGAAATGTGTTCCTTTCCATCAACCAGAAACTaGAGGTCTGCAGTGTCAGGG +
Preference number: 5 (lower is better)
Translates to: WSRNSFLHHNATHEMCSFPSTRN*RSAVSG
Trigger: CCCTGACACTGCAGACCTCAAGTTTCTGGTTGATGG...AAAGGAACACATTTCATGGGTAGCATTGTGATGGAGAAATGAGTTTCTAGACCA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR CAA 90 bp CACACACACACACACACACAAAACAGAGCCAAGAAAGCTGTTAGCGAGTTACTCCTCCTCACAGATTCCTaGCTTGATAGTTTGTTGACA +
Preference number: 5 (lower is better)
Translates to: HTHTHTQNRAKKAVSELLLLTDS*LDSLLT
Trigger: TGTCAACAAACTATCAAGCAAGGAATCTGTGAGGAG...GAGTAACTCGCTAACAGCTTTCTTGGCTCTGTTTTGTGTGTGTGTGTGTGTGTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000022702.13
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR CAA 90 bp TGGTCTAGAAACTCATTTCTCCATCACAATGCTACCCATGAAATGTGTTCCTTTTCCTGGGCATCATACTaGACAGCAGCAGAGAGCAGA +
Preference number: 5 (lower is better)
Translates to: WSRNSFLHHNATHEMCSFSWASY*TAAESR
Trigger: TCTGCTCTCTGCTGCTGTCAAGTATGATGCCCAGGA...AAAGGAACACATTTCATGGGTAGCATTGTGATGGAGAAATGAGTTTCTAGACCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR CAA 90 bp TACTGTAAATCTCGGGGTAGGCAGATAGAGAGAACTGACTACAGCCTTTTGACACTCCTCACAGATTCCTaGCTTGATAGTTTGTTGACA +
Preference number: 5 (lower is better)
Translates to: YCKSRGRQIERTDYSLLTLLTDS*LDSLLT
Trigger: TGTCAACAAACTATCAAGCAAGGAATCTGTGAGGAG...TGTCAAAAGGCTGTAGTCAGTTCTCTCTATCTGCCTACCCCGAGATTTACAGTA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000022702.13
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR CAA 90 bp ACTCCCCACAAGAGTGGCACTGGTACACTTTCAGCTTCTATGTGGTATATCATATTGCTTGATAGTTTGTaGACAGAGCTTTTTCAACCG +
Preference number: 5 (lower is better)
Translates to: TPHKSGTGTLSASMWYIILLDSL*TELFQP
Trigger: CGGTTGAAAAAGCTCTGTCAACAAACTATCAAGCAA...TATGATATACCACATAGAAGCTGAAAGTGTACCAGTGCCACTCTTGTGGGGAGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000022702.13
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR CAA 90 bp AACAAAAAGCACACACACACACACACACACACAAAACAGAGCCAAGAAAGCTGTCTCCTCACAGATTCCTaGCTTGATAGTTTGTTGACA +
Preference number: 5 (lower is better)
Translates to: NKKHTHTHTHTKQSQESCLLTDS*LDSLLT
Trigger: TGTCAACAAACTATCAAGCAAGGAATCTGTGAGGAG...ACAGCTTTCTTGGCTCTGTTTTGTGTGTGTGTGTGTGTGTGTGTGCTTTTTGTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000022702.13
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR CAA 90 bp TTATTTATCTTTGCTGGGGTGAAATGGGAAGGCTTAAGCATTCTTTTCCACATTGACAGCCACTGCAGTTaGTGCCAAGCACAAAAATCT +
Preference number: 5 (lower is better)
Translates to: LFIFAGVKWEGLSILFHIDSHCS*CQAQKS
Trigger: AGATTTTTGTGCTTGGCACAAACTGCAGTGGCTGTC...AATGTGGAAAAGAATGCTTAAGCCTTCCCATTTCACCCCAGCAAAGATAAATAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 6 transcripts:
ENSMUST00000022702.13
ENSMUST00000110952.10
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR CAA 90 bp ACACACACACACACACAAAACAGAGCCAAGAAAGCTGTTAGCGAGTTACTCATATTGCTTGATAGTTTGTaGACAGAGCTTTTTCAACCG +
Preference number: 5 (lower is better)
Translates to: THTHTQNRAKKAVSELLILLDSL*TELFQP
Trigger: CGGTTGAAAAAGCTCTGTCAACAAACTATCAAGCAA...TATGAGTAACTCGCTAACAGCTTTCTTGGCTCTGTTTTGTGTGTGTGTGTGTGT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000022702.13
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR CAA 90 bp TATCTTTGCTGGGGTGAAATGGGAAGGCTTAAGCATTCTTTTCCACATTCAGGATTGCTTGATAGTTTGTaGACAGAGCTTTTTCAACCG +
Preference number: 5 (lower is better)
Translates to: YLCWGEMGRLKHSFPHSGLLDSL*TELFQP
Trigger: CGGTTGAAAAAGCTCTGTCAACAAACTATCAAGCAA...TCCTGAATGTGGAAAAGAATGCTTAAGCCTTCCCATTTCACCCCAGCAAAGATA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 6 transcripts:
ENSMUST00000022702.13
ENSMUST00000110952.10
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR CAA 90 bp TTGAGCAACAAAACAGATCCAGCCTACATTCAGATCACAGATCACAACACCATGTTGCTTGATAGTTTGTaGACAGAGCTTTTTCAACCG +
Preference number: 5 (lower is better)
Translates to: LSNKTDPAYIQITDHNTMLLDSL*TELFQP
Trigger: CGGTTGAAAAAGCTCTGTCAACAAACTATCAAGCAA...CATGGTGTTGTGATCTGTGATCTGAATGTAGGCTGGATCTGTTTTGTTGCTCAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000171767.8
CDS-3UTR CAA 90 bp TTTATCTTTGCTGGGGTGAAATGGGAAGGCTTAAGCATTCTTTTCCACATTCAGCTCCTCACAGATTCCTaGCTTGATAGTTTGTTGACA +
Preference number: 5 (lower is better)
Translates to: FIFAGVKWEGLSILFHIQLLTDS*LDSLLT
Trigger: TGTCAACAAACTATCAAGCAAGGAATCTGTGAGGAG...CTGAATGTGGAAAAGAATGCTTAAGCCTTCCCATTTCACCCCAGCAAAGATAAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000022702.13
ENSMUST00000110952.10
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR CAA 90 bp TATGTATGGCATCTGCAAGGTGAAGAACATCGACCTCAAGTTCAAAATCATCGTCTCCTCACAGATTCCTaGCTTGATAGTTTGTTGACA +
Preference number: 5 (lower is better)
Translates to: YVWHLQGEEHRPQVQNHRLLTDS*LDSLLT
Trigger: TGTCAACAAACTATCAAGCAAGGAATCTGTGAGGAG...ACGATGATTTTGAACTTGAGGTCGATGTTCTTCACCTTGCAGATGCCATACATA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000171767.8
CDS-3UTR CAA 90 bp ATTTATCTTTGCTGGGGTGAAATGGGAAGGCTTAAGCATTCTTTTCCACATTCACTCCTCACAGATTCCTaGCTTGATAGTTTGTTGACA +
Preference number: 5 (lower is better)
Translates to: IYLCWGEMGRLKHSFPHSLLTDS*LDSLLT
Trigger: TGTCAACAAACTATCAAGCAAGGAATCTGTGAGGAG...TGAATGTGGAAAAGAATGCTTAAGCCTTCCCATTTCACCCCAGCAAAGATAAAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000022702.13
ENSMUST00000110952.10
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR CAA 90 bp CTATGTATCAGCCAGCTGAATACTGAACCATTTCTCCAGATTAGCAAACTATCATTGCTTGATAGTTTGTaGACAGAGCTTTTTCAACCG +
Preference number: 5 (lower is better)
Translates to: LCISQLNTEPFLQISKLSLLDSL*TELFQP
Trigger: CGGTTGAAAAAGCTCTGTCAACAAACTATCAAGCAA...TGATAGTTTGCTAATCTGGAGAAATGGTTCAGTATTCAGCTGGCTGATACATAG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000022702.13
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR CAA 90 bp ATTTATCTTTGCTGGGGTGAAATGGGAAGGCTTAAGCATTCTTTTCCACATTCATTGCTTGATAGTTTGTaGACAGAGCTTTTTCAACCG +
Preference number: 5 (lower is better)
Translates to: IYLCWGEMGRLKHSFPHSLLDSL*TELFQP
Trigger: CGGTTGAAAAAGCTCTGTCAACAAACTATCAAGCAA...TGAATGTGGAAAAGAATGCTTAAGCCTTCCCATTTCACCCCAGCAAAGATAAAT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 6 transcripts:
ENSMUST00000022702.13
ENSMUST00000110952.10
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR CAA 90 bp TTATTTATCTTTGCTGGGGTGAAATGGGAAGGCTTAAGCATTCTTTTCCACATTCTCCTCACAGATTCCTaGCTTGATAGTTTGTTGACA +
Preference number: 5 (lower is better)
Translates to: LFIFAGVKWEGLSILFHILLTDS*LDSLLT
Trigger: TGTCAACAAACTATCAAGCAAGGAATCTGTGAGGAG...AATGTGGAAAAGAATGCTTAAGCCTTCCCATTTCACCCCAGCAAAGATAAATAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000022702.13
ENSMUST00000110952.10
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS-3UTR CAA 90 bp TTATTTATCTTTGCTGGGGTGAAATGGGAAGGCTTAAGCATTCTTTTCCACATTTTGCTTGATAGTTTGTaGACAGAGCTTTTTCAACCG +
Preference number: 5 (lower is better)
Translates to: LFIFAGVKWEGLSILFHILLDSL*TELFQP
Trigger: CGGTTGAAAAAGCTCTGTCAACAAACTATCAAGCAA...AATGTGGAAAAGAATGCTTAAGCCTTCCCATTTCACCCCAGCAAAGATAAATAA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 6 transcripts:
ENSMUST00000022702.13
ENSMUST00000110952.10
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
CDS GCA 72 bp TGTGTGCGTAGCCACAGGCAACCCGCTGGACACGGATaGCTTGCAGGGCGGCCACTCTGCATGGGGTGGGCT +
Preference number: 6 (lower is better)
Translates to: CVRSHRQPAGHG*LAGRPLCMGWA
Trigger: AGCCCACCCCATGCAGAGTGGCCGCCCTGCAAGGCATCCGTGTCCAGCGGGTTGCCTGTGGCTACGCACACA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000022702.13
ENSMUST00000110952.10
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
ENSMUST00000171767.8
CDS CAA 72 bp TGCGTAGCCACAGGCAACCCGCTGGACACGGATGCCTaGCAGGGCGGCCACTCTGCATGGGGTGGGCTGGTT +
Preference number: 6 (lower is better)
Translates to: CVATGNPLDTDA*QGGHSAWGGLV
Trigger: AACCAGCCCACCCCATGCAGAGTGGCCGCCCTGCAAGGCATCCGTGTCCAGCGGGTTGCCTGTGGCTACGCA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000022702.13
ENSMUST00000110952.10
ENSMUST00000164822.8
ENSMUST00000169479.8
ENSMUST00000169513.8
ENSMUST00000170677.8
ENSMUST00000171767.8
CDS GCA 72 bp ACAGGCTGCAATCTCTATGATTCCGCTGGACACGGATaGCTTGCAGGGCGGCCACTCTGCATGGGGTGGGCT +
Preference number: 6 (lower is better)
Translates to: TGCNLYDSAGHG*LAGRPLCMGWA
Trigger: AGCCCACCCCATGCAGAGTGGCCGCCCTGCAAGGCATCCGTGTCCAGCGGAATCATAGAGATTGCAGCCTGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000163797.2
ENSMUST00000164298.8
CDS CAA 72 bp GCTGCAATCTCTATGATTCCGCTGGACACGGATGCCTaGCAGGGCGGCCACTCTGCATGGGGTGGGCTGGTT +
Preference number: 6 (lower is better)
Translates to: AAISMIPLDTDA*QGGHSAWGGLV
Trigger: AACCAGCCCACCCCATGCAGAGTGGCCGCCCTGCAAGGCATCCGTGTCCAGCGGAATCATAGAGATTGCAGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000163797.2
ENSMUST00000164298.8